tRFexplorer
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer. tRFexplorer is a public database through which users may display the expression profile of tRNA-derived ncRNAs in every cell line of NCI-60. The system allows to perform correlation analyses of tRNA-derived ncRNAs expression with all omics data and compound activities available on CellMiner. This provides an important opportunity to investigate their potential biological roles in absence of direct experimental evidences
Description
More detailed information about this field from each metasource.
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer. tRFexplorer is a public database through which users may display the expression profile of tRNA-derived ncRNAs in every cell line of NCI-60. The system allows to perform correlation analyses of tRNA-derived ncRNAs expression with all omics data and compound activities available on CellMiner. This provides an important opportunity to investigate their potential biological roles in absence of direct experimental evidences
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:18.298291
Webpage:
https://trfexplorer.cloud/Webpage
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer
PMID: 31735953
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:18.298291
Publications
More detailed information about this field from each metasource.
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer
PMID: 31735953
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:18.298291
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Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer
PubMed citations: 15.
15 articles citing: Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer
Pathway Analysis for Cancer Research and Precision Oncology Applications. PMID:35230687
Deciphering the tRNA-derived small RNAs: origin, development, and future. PMID:34934044
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data. PMID:34755848
tRNA-derived small RNAs: novel regulators of cancer hallmarks and targets of clinical application. PMID:34537813
tRNA-derived fragments as New Hallmarks of Aging and Age-related Diseases. PMID:34341710
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. PMID:34082707
Mechanisms of tRNA-derived fragments and tRNA halves in cancer treatment resistance. PMID:33072328
tsRBase: a comprehensive database for expression and function of tsRNAs in multiple species. PMID:33068436
tRFtarget: a database for transfer RNA-derived fragment targets. PMID:33035346
tRNA-Derived Small RNAs: Novel Epigenetic Regulators. PMID:32992597
Transfer RNA-Derived Small RNAs: Another Layer of Gene Regulation and Novel Targets for Disease Therapeutics. PMID:32956625
miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions. PMID:32938402
tRNA-derived RNA fragments in cancer: current status and future perspectives. PMID:32887641
Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient Survival. PMID:32785169
Action mechanisms and research methods of tRNA-derived small RNAs. PMID:32606362
Tags:
Tags
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functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:18.298291
rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:18.298291
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:18.298291
oncology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:18.298291
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:18.298291
Tags
More detailed information about this field from each metasource.
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:18.298291
rna-seq
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:18.298291
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:18.298291
oncology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:18.298291
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:18.298291
functional, regulatory and non-coding rna rna sequence gene transcripts oncology gene expression
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