DNA Methylation Interactive Visualization Database

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DNA Methylation Interactive Visualization Database

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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DNMIVD

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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DNA Methylation Interactive Visualization Database (DNMIVD)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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Other names: DNMIVD, DNA Methylation Interactive Visualization Database (DNMIVD)

DNMIVD is a comprehensive annotation and interactive visualization database for DNA methylation profile of diverse human cancer constructed with high throughput microarray data from TCGA and GEO databases, and it also integrates some data from Pancan-meQTL and HACER databases.

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis
PMID: 30696380

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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DNMIVD: DNA methylation interactive visualization database
PMID: 31598709

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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• Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis PubMed citations: 40.

  40 articles citing: Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis

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  DNA Methylation-Specific Analysis of G Protein-Coupled Receptor-Related Genes in Pan-Cancer. PMID:35885996

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  A systematic pan-cancer analysis identifies RIOK3 as an immunological and prognostic biomarker. PMID:35836879

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  Diagnostic classification of cancers using DNA methylation of paracancerous tissues. PMID:35739223

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  Prognostic significance of CHAC1 expression in breast cancer. PMID:35729480

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  Survival-related genes are diversified across cancers but generally enriched in cancer hallmark pathways. PMID:35508961

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  The Prognostic Value and Immunological Role of STEAP1 in Pan-Cancer: A Result of Data-Based Analysis. PMID:35313641

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  Site-Specific Hypermethylation of SST 1stExon as a Biomarker for Predicting the Risk of Gastrointestinal Tract Cancers. PMID:35242243

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  SCNN1A Overexpression Correlates with Poor Prognosis and Immune Infiltrates in Ovarian Cancer. PMID:35221714

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  Pan-Cancer Analyses Reveal Oncogenic Role and Prognostic Value of F-Box Only Protein 22. PMID:35141150

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  The Multi-Omics Analysis of Key Genes Regulating EGFR-TKI Resistance, Immune Infiltration, SCLC Transformation in EGFR-Mutant NSCLC. PMID:35140497

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  Pan-Cancer DNA Methylation Analysis and Tumor Origin Identification of Carcinoma of Unknown Primary Site Based on Multi-Omics. PMID:35069697

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  DNA methylation and single-nucleotide polymorphisms in DDX58 are associated with hand, foot and mouth disease caused by enterovirus 71. PMID:35041675

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  Genome-wide DNA methylation profiling and identification of potential pan-cancer and tumor-specific biomarkers. PMID:34978357

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  Correlation between promoter methylation of the LDH-C4 gene and DNMT expression in breast cancer and their prognostic significance. PMID:34966451

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  Integral Analyses of Competing Endogenous RNA Mechanisms and DNA Methylation Reveal Regulatory Mechanisms in Osteosarcoma. PMID:34957096

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  A Novel Gene Prognostic Signature Based on Differential DNA Methylation in Breast Cancer. PMID:34956313

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  The Application of Bayesian Methods in Cancer Prognosis and Prediction. PMID:34949654

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  Na+/H+-Exchanger Family as Novel Prognostic Biomarkers in Colorectal Cancer. PMID:34759967

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  Pan-cancer methylome analysis for cancer diagnosis and classification of cancer cell of origin. PMID:34744163

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  Charting differentially methylated regions in cancer with Rocker-meth. PMID:34728774

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  The detection of specific hypermethylated WIF1 and NPY genes in circulating DNA by crystal digital PCR™ is a powerful new tool for colorectal cancer diagnosis and screening. PMID:34627187

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  TRIM59: A potential diagnostic and prognostic biomarker in human tumors. PMID:34534244

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  Identification of HCC-Related Genes Based on Differential Partial Correlation Network. PMID:34335688

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  Methylation silencing CDH23 is a poor prognostic marker in diffuse large B-cell lymphoma. PMID:34252883

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  RNA-Sequencing Reveals Heat Shock 70-kDa Protein 6 (HSPA6) as a Novel Thymoquinone-Upregulated Gene That Inhibits Growth, Migration, and Invasion of Triple-Negative Breast Cancer Cells. PMID:34017687

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  A Novel Biomarker Identification Approach for Gastric Cancer Using Gene Expression and DNA Methylation Dataset. PMID:33868380

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  Integrated Profiling Identifies CCNA2 as a Potential Biomarker of Immunotherapy in Breast Cancer. PMID:33859479

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  Pan-Cancer Genome-Wide DNA Methylation Analyses Revealed That Hypermethylation Influences 3D Architecture and Gene Expression Dysregulation in HOXA Locus During Carcinogenesis of Cancers. PMID:33816499

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  Pan-Cancer Analysis of Human Kinome Gene Expression and Promoter DNA Methylation Identifies Dark Kinase Biomarkers in Multiple Cancers. PMID:33801837

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  A Risk Prediction Model for Breast Cancer Based on Immune Genes Related to Early Growth Response Proteins Family. PMID:33614706

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  Integrate analysis of the promote function of Cell division cycle-associated protein family to pancreatic adenocarcinoma. PMID:33437202

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  Identification of the origin of brain metastases based on the relative methylation orderings of CpG sites. PMID:32965167

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  Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis. PMID:32832275

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  Identification of High-Frequency Methylation Sites in RNF180 Promoter Region Affecting Expression and Their Relationship with Prognosis of Gastric Cancer. PMID:32494203

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  Integrative analysis of DNA methylation and gene expression profiles identified potential breast cancer-specific diagnostic markers. PMID:32412047

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  Co-occurrence and Mutual Exclusivity Analysis of DNA Methylation Reveals Distinct Subtypes in Multiple Cancers. PMID:32064261

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  Integrated analysis of DNA methylation and mRNA expression profiles to identify key genes involved in the regrowth of clinically non-functioning pituitary adenoma. PMID:32015217

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  LAT, HOXD3 and NFE2L3 identified as novel DNA methylation-driven genes and prognostic markers in human clear cell renal cell carcinoma by integrative bioinformatics approaches. PMID:31777602

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  The Gasdermin E Gene Has Potential as a Pan-Cancer Biomarker, While Discriminating between Different Tumor Types. PMID:31752152

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  DNMIVD: DNA methylation interactive visualization database. PMID:31598709
• DNMIVD: DNA methylation interactive visualization database PubMed citations: 39.

  39 articles citing: DNMIVD: DNA methylation interactive visualization database

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  The Expression and Role Analysis of Methylation-Regulated Differentially Expressed Gene UBE2C in Pan-Cancer, Especially for HGSOC. PMID:35804892

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  Hypoxia-Related Signature Is a Prognostic Biomarker of Pancreatic Cancer. PMID:35789607

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  MIAOME: Human microbiome affect the host epigenome. PMID:35664224

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  Network Approaches for Charting the Transcriptomic and Epigenetic Landscape of the Developmental Origins of Health and Disease. PMID:35627149

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  TGFβ2 is a Prognostic Biomarker for Gastric Cancer and is Associated With Methylation and Immunotherapy Responses. PMID:35620459

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  A Potential Prognostic Marker PRDM1 in Pancreatic Adenocarcinoma. PMID:35607327

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  Promoter hypermethylation of GALR1 acts as an early epigenetic susceptibility event in colorectal carcinogenesis. PMID:35606503

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  Integrated computational analysis reveals HOX genes cluster as oncogenic drivers in head and neck squamous cell carcinoma. PMID:35562533

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  MrgprF acts as a tumor suppressor in cutaneous melanoma by restraining PI3K/Akt signaling. PMID:35504869

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  Genetic and environment effects on structural neuroimaging endophenotype for bipolar disorder: a novel molecular approach. PMID:35379780

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  Single-Cell RNA Sequencing Revealed a 3-Gene Panel Predicted the Diagnosis and Prognosis of Thyroid Papillary Carcinoma and Associated With Tumor Immune Microenvironment. PMID:35359404

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  Prognostic and biological role of the N-Myc downstream-regulated gene family in hepatocellular carcinoma. PMID:35321174

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  The Prognostic Value and Immunological Role of STEAP1 in Pan-Cancer: A Result of Data-Based Analysis. PMID:35313641

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  Comprehensive pan-cancer analysis on CBX3 as a prognostic and immunological biomarker. PMID:35172803

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  Computational challenges in detection of cancer using cell-free DNA methylation. PMID:34976309

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  Comprehensive Analysis of LPCATs Highlights the Prognostic and Immunological Values of LPCAT1/4 in Hepatocellular Carcinoma. PMID:34876845

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  DNA methylation variation along the cancer epigenome and the identification of novel epigenetic driver events. PMID:34871444

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  Epigenetic DNA Modifications Upregulate SPRY2 in Human Colorectal Cancers. PMID:34685612

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  COVID-19 disease and malignant cancers: The impact for the furin gene expression in susceptibility to SARS-CoV-2. PMID:34671211

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  Comprehensive analysis of EMT-related genes and lncRNAs in the prognosis, immunity, and drug treatment of colorectal cancer. PMID:34526059

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  Evidence of Omics, Immune Infiltration, and Pharmacogenomic for SENP1 in the Pan-Cancer Cohort. PMID:34276383

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  Methylation silencing CDH23 is a poor prognostic marker in diffuse large B-cell lymphoma. PMID:34252883

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  Analysis of Nuclear Encoded Mitochondrial Gene Networks in Cervical Cancer. PMID:34181336

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  COVID-19 and Malignancy: Exploration of the possible genetic and epigenetic interlinks and overview of the vaccination scenario. PMID:34171559

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  Pan-cancer analysis of the prognostic value of C12orf75 based on data mining. PMID:34074799

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  RNA-Sequencing Reveals Heat Shock 70-kDa Protein 6 (HSPA6) as a Novel Thymoquinone-Upregulated Gene That Inhibits Growth, Migration, and Invasion of Triple-Negative Breast Cancer Cells. PMID:34017687

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  Epigenetic dysregulation of immune-related pathways in cancer: bioinformatics tools and visualization. PMID:33963293

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  Genetic impacts on DNA methylation: research findings and future perspectives. PMID:33931130

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  Identification of prognostic biomarkers associated with the occurrence of portal vein tumor thrombus in hepatocellular carcinoma. PMID:33878734

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  Identification of a Six Gene Prognosis Signature for Papillary Thyroid Cancer Using Multi-Omics Methods and Bioinformatics Analysis. PMID:33816258

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  ACE2 correlates with immune infiltrates in colon adenocarcinoma: Implication for COVID-19. PMID:33765612

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  A Risk Prediction Model for Breast Cancer Based on Immune Genes Related to Early Growth Response Proteins Family. PMID:33614706

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  Prostate adenocarcinoma and COVID-19: The possible impacts of TMPRSS2 expressions in susceptibility to SARS-CoV-2. PMID:33609069

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  Transcriptional and epigenetic landscape of Ca2+-signaling genes in hepatocellular carcinoma. PMID:33398721

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  Genomic, epigenomic, and immune subtype analysis of CTSL/B and SARS-CoV-2 receptor ACE2 in pan-cancer. PMID:33231569

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  AtMAD: Arabidopsis thaliana multi-omics association database. PMID:33219693

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  NTRK2 methylation is related to reduced PTSD risk in two African cohorts of trauma survivors. PMID:32817534

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  Increased expression of secreted frizzled related protein 1 (SFRP1) predicts ampullary adenocarcinoma recurrence. PMID:32764696

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  The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604

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Tags

More detailed information about this field from each metasource. ×

cancer

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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dna methylation

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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diagnosis

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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methylation

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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prognosis

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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quantitative trait loci

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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tumor

metasource: Fairsharing.org
version: FAIRsharing.org: DNMIVD; DNA Methylation Interactive Visualization Database; DOI: https://doi.org/10.25504/FAIRsharing.ZKahvn; Last edited: April 27, 2021, 7:53 a.m.; Last accessed: Jan 03 2022 7:07 p.m.

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epigenetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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oncology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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dna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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methylated dna immunoprecipitation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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microarray experiment

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:30.518330

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cancer dna methylation diagnosis methylation prognosis quantitative trait loci tumor epigenetics oncology dna methylated dna immunoprecipitation microarray experiment