VISDB

a manually curated database of viral integration sites in the human genome. VISDB, visdb, virus integration site, viral integration, DNA virus, retrovirus, HBV, HPV, HIV, HTLV-1, EBV, AAV2, MCV, MLV, XMRV, gene, fragile site, miRNA, database, resource, UTHealth, SBMI, Zhongming Zhao

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VISDB: a manually curated database of viral integration sites in the human genome
PMID: 31598702

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:17.168290

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• VISDB: a manually curated database of viral integration sites in the human genome PubMed citations: 14.

  14 articles citing: VISDB: a manually curated database of viral integration sites in the human genome

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  Hepatitis B Virus Integration into Transcriptionally Active Loci and HBV-Associated Hepatocellular Carcinoma. PMID:35208708

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  Non-Random Pattern of Integration for Epstein-Barr Virus with Preference for Gene-Poor Genomic Chromosomal Regions into the Genome of Burkitt Lymphoma Cell Lines. PMID:35062290

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  FusionGDB 2.0: fusion gene annotation updates aided by deep learning. PMID:34755868

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  FusionAI: Predicting fusion breakpoint from DNA sequence with deep learning. PMID:34646994

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  virusMED: an atlas of hotspots of viral proteins. PMID:34614039

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  ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects. PMID:34500462

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  Flies in the ointment: AAV vector preparations and tumor risk. PMID:34450107

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  Hepatitis B Virus DNA Integration, Chronic Infections and Hepatocellular Carcinoma. PMID:34442866

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  DeepHBV: a deep learning model to predict hepatitis B virus (HBV) integration sites. PMID:34233610

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  HPV16 and HPV18 type-specific APOBEC3 and integration profiles in different diagnostic categories of cervical samples. PMID:34175494

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  HCV poly U/UC sequence-induced inflammation leads to metabolic disorders in vulvar lichen sclerosis. PMID:34145025

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  DeepVISP: Deep Learning for Virus Site Integration Prediction and Motif Discovery. PMID:33977077

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  DNA Copy Number Changes in Diffuse Large B Cell Lymphomas. PMID:33344238

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  Toward Preparing a Knowledge Base to Explore Potential Drugs and Biomedical Entities Related to COVID-19: Automated Computational Approach. PMID:33055059

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functional, regulatory and non-coding rna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:17.168290

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transcription factors and regulatory sites

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:17.168290

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:17.168290

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oncology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:17.168290

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genomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:17.168290

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functional, regulatory and non-coding rna transcription factors and regulatory sites gene transcripts oncology genomics