Proteomics Pipeline Infrastructure for CPTAC
Names
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Proteomics Pipeline Infrastructure for CPTAC
metasource: Fairsharing.org
version: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
CPTAC
metasource: Fairsharing.org
version: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: alpha 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CPTAC
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
CPTAC Proteomics Pipeline Infrastructure Ontology
metasource: Biontology / Bioportal
version: alpha 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CPTAC
cptac
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
Names
More detailed information about this field from each metasource.
Proteomics Pipeline Infrastructure for CPTAC
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
CPTAC
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: alpha 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CPTAC
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
CPTAC Proteomics Pipeline Infrastructure Ontology
metasource: Biontology / Bioportalversion: alpha 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CPTAC
cptac
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
Other names: CPTAC, CPTAC Proteomics Pipeline Infrastructure Ontology, cptac
Names
More detailed information about this field from each metasource.
Proteomics Pipeline Infrastructure for CPTAC
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
CPTAC
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: alpha 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CPTAC
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
CPTAC Proteomics Pipeline Infrastructure Ontology
metasource: Biontology / Bioportalversion: alpha 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CPTAC
cptac
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project
Description
More detailed information about this field from each metasource.
A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
a basic ontology which describes the proteomics pipeline infrastructure for CPTAC project
metasource: Biontology / Bioportalversion: alpha 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CPTAC
This software provides easy access to cancer data from the National Cancer Institute’s CPTAC program, which characterizes and studies the proteogenomic landscape of tumors. We implement the software as a Python package called cptac, but you can seamlessly use it in an R environment with the help of the reticulate package (demonstrated in Tutorial 6). Our package is installed in one step with pip:.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
Webpage:
http://bioportal.bioontology.org/ontologies/1192Webpage
More detailed information about this field from each metasource.
http://bioportal.bioontology.org/ontologies/1192
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://paynelab.github.io/cptac/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
Licence:
Name: Apache-2.0Licence name
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Publications:
Publications
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Simplified and Unified Access to Cancer Proteogenomic Data
PMID: 33560848
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
Publications
More detailed information about this field from each metasource.
Simplified and Unified Access to Cancer Proteogenomic Data
PMID: 33560848
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
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Simplified and Unified Access to Cancer Proteogenomic Data
PubMed citations: 4.
4 articles citing: Simplified and Unified Access to Cancer Proteogenomic Data
Cancer proteogenomics: current impact and future prospects. PMID:35236940
Detecting fabrication in large-scale molecular omics data. PMID:34847169
Online Tools for Teaching Cancer Bioinformatics. PMID:34594439
Transcriptome features of striated muscle aging and predictability of protein level changes. PMID:34328155
Tags:
Tags
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data acquisition
metasource: Fairsharing.org
version: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
data transformation
metasource: Fairsharing.org
version: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
proteogenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
oncology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
proteomics experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:02.026396
Tags
More detailed information about this field from each metasource.
data acquisition
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
data transformation
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: CPTAC; Proteomics Pipeline Infrastructure for CPTAC; DOI: https://doi.org/10.25504/FAIRsharing.y9d8rt; Last edited: Dec. 18, 2019, 11:40 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
proteogenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
oncology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
proteomics experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
transcriptomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:02.026396
data acquisition data transformation protein proteogenomics proteomics oncology proteomics experiment transcriptomics
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