Pancreatic Expression database
Names
More detailed information about this field from each metasource.
Pancreatic Expression database
metasource: Fairsharing.org
version: None
PED
metasource: Fairsharing.org
version: None
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Pancreatic Expression Database (PED)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
ped
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Names
More detailed information about this field from each metasource.
Pancreatic Expression database
metasource: Fairsharing.orgversion: None
PED
metasource: Fairsharing.orgversion: None
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Pancreatic Expression Database (PED)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
ped
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
Other names: PED, Pancreatic Expression Database (PED), ped
Names
More detailed information about this field from each metasource.
Pancreatic Expression database
metasource: Fairsharing.orgversion: None
PED
metasource: Fairsharing.orgversion: None
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Pancreatic Expression Database (PED)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
ped
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
The Pancreatic Expression Database (PED) is a repository for pancreatic-derived -omics data. With a generic web-based system, the database provides the research community with an open access tool to mine currently available pancreatic cancer experimental data sets generated by using large-scale transcriptomic, genomic, proteomic, miRNA and methylomic platforms. The website also provides users with the opportunity to include their own published dataset in the database.
Description
More detailed information about this field from each metasource.
The Pancreatic Expression Database (PED) is a repository for pancreatic-derived -omics data. With a generic web-based system, the database provides the research community with an open access tool to mine currently available pancreatic cancer experimental data sets generated by using large-scale transcriptomic, genomic, proteomic, miRNA and methylomic platforms. The website also provides users with the opportunity to include their own published dataset in the database.
metasource: Fairsharing.orgversion: None
The Pancreatic Expression Database (PED, http://www.pancreasexpression.org) continues to be a major resource for mining pancreatic –omics data a decade after its initial release. Here, we present recent updates to PED and describe its evolution into a comprehensive resource for extracting, analysing and integrating publicly available multi-omics datasets. A new analytical module has been implemented to run in parallel with the existing literature mining functions. This analytical module has been created using rich data content derived from pancreas-related specimens available through the major data repositories (GEO, ArrayExpress) and international initiatives (TCGA, GENIE, CCLE). Researchers have access to a host of functions to tailor analyses to meet their needs. Results are presented using interactive graphics that allow the molecular data to be visualized in a user-friendly manner. Furthermore, researchers are provided with the means to superimpose layers of molecular information to gain greater insight into alterations and the relationships between them. The literature-mining module has been improved with a redesigned web appearance, restructured query platforms and updated annotations. These updates to PED are in preparation for its integration with the Pancreatic Cancer Research Fund Tissue Bank (PCRFTB), a vital resource of pancreas cancer tissue for researchers to support and promote cutting-edge research.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Repository for pancreatic-derived -omics data. It includes easurements derived from transcriptomics, proteomics, genomics and miRNA profiles from various pancreas-centred reports on a broad range of specimen and experimental types.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
Webpage:
http://www.pancreasexpression.org/Webpage
More detailed information about this field from each metasource.
http://www.pancreasexpression.org/
metasource: Fairsharing.orgversion: None
http://www.pancreasexpression.org
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Publications:
(6)
Publications
More detailed information about this field from each metasource.
Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets
PMID: 18045474
metasource: Fairsharing.org
version: None
The pancreatic expression database: recent extensions and updates
PMID: 24163255
metasource: Fairsharing.org
version: None
The Pancreatic Expression database: 2011 update
PMID: 20959292
metasource: Fairsharing.org
version: None
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Using BioMart as a framework to manage and query pancreatic cancer data
PMID: 21666272
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
The Pancreatic Expression Database: 2018 update
PMID: 29059374
metasource: Fairsharing.org
version: None
http://dx.doi.org/10.1093/nar/gkx955
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets
PMID: 18045474
metasource: Fairsharing.org
version: None
The pancreatic expression database: recent extensions and updates
PMID: 24163255
metasource: Fairsharing.org
version: None
The Pancreatic Expression database: 2011 update
PMID: 20959292
metasource: Fairsharing.org
version: None
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Using BioMart as a framework to manage and query pancreatic cancer data
PMID: 21666272
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
The Pancreatic Expression Database: 2018 update
PMID: 29059374
metasource: Fairsharing.org
version: None
http://dx.doi.org/10.1093/nar/gkx955
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets
PubMed citations: 21.
21 articles citing: Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets
DNA Methylation of PI3K/AKT Pathway-Related Genes Predicts Outcome in Patients with Pancreatic Cancer: A Comprehensive Bioinformatics-Based Study. PMID:34944974
In pancreatic β-cells myosin 1b regulates glucose-stimulated insulin secretion by modulating an early step in insulin granule trafficking from the Golgi. PMID:33826361
The A818-6 system as an in-vitro model for studying the role of the transportome in pancreatic cancer. PMID:32228510
MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene Signature. PMID:31217513
GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer. PMID:31089686
A two-microRNA signature as a diagnostic and prognostic marker of pancreatic adenocarcinoma. PMID:29942152
The Pancreatic Expression Database: 2018 update. PMID:29059374
Assignment of Functional Relevance to Genes at Type 2 Diabetes-Associated Loci Through Investigation of β-Cell Mass Deficits. PMID:26963759
Big Data: the challenge for small research groups in the era of cancer genomics. PMID:26492224
Identification and characterization of the gene expression profiles for protein coding and non-coding RNAs of pancreatic ductal adenocarcinomas. PMID:26053098
Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer. PMID:25910082
New insights in the composition of extracellular vesicles from pancreatic cancer cells: implications for biomarkers and functions. PMID:25469109
Screening technologies for target identification in pancreatic cancer. PMID:24212607
The pancreatic expression database: recent extensions and updates. PMID:24163255
Comprehensive literature review and statistical considerations for microarray meta-analysis. PMID:22262733
The molecular and cellular heterogeneity of pancreatic ductal adenocarcinoma. PMID:22183185
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. PMID:22078386
A global insight into a cancer transcriptional space using pancreatic data: importance, findings and flaws. PMID:21724610
Using BioMart as a framework to manage and query pancreatic cancer data. PMID:21666272
The Pancreatic Expression database: 2011 update. PMID:20959292
BioMart--biological queries made easy. PMID:19144180 -
The pancreatic expression database: recent extensions and updates
PubMed citations: 18.
18 articles citing: The pancreatic expression database: recent extensions and updates
DNA Methylation of PI3K/AKT Pathway-Related Genes Predicts Outcome in Patients with Pancreatic Cancer: A Comprehensive Bioinformatics-Based Study. PMID:34944974
In pancreatic β-cells myosin 1b regulates glucose-stimulated insulin secretion by modulating an early step in insulin granule trafficking from the Golgi. PMID:33826361
The A818-6 system as an in-vitro model for studying the role of the transportome in pancreatic cancer. PMID:32228510
Comparison of tumour and serum specific microRNA changes dissecting their role in pancreatic ductal adenocarcinoma: a meta-analysis. PMID:31795960
An Integrative Data Mining and Omics-Based Translational Model for the Identification and Validation of Oncogenic Biomarkers of Pancreatic Cancer. PMID:30700038
dbDEPC 3.0: the database of differentially expressed proteins in human cancer with multi-level annotation and drug indication. PMID:29688359
mRNA expression profiles obtained from microdissected pancreatic cancer cells can predict patient survival. PMID:29285214
The Pancreatic Expression Database: 2018 update. PMID:29059374
Splice variants as novel targets in pancreatic ductal adenocarcinoma. PMID:28592875
Mining Exosomal Genes for Pancreatic Cancer Targets. PMID:28446531
Reconstituting development of pancreatic intraepithelial neoplasia from primary human pancreas duct cells. PMID:28272465
Assignment of Functional Relevance to Genes at Type 2 Diabetes-Associated Loci Through Investigation of β-Cell Mass Deficits. PMID:26963759
Identification of a Three-Biomarker Panel in Urine for Early Detection of Pancreatic Adenocarcinoma. PMID:26240291
Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer. PMID:25910082
The BioMart community portal: an innovative alternative to large, centralized data repositories. PMID:25897122
miR-186 and 326 predict the prognosis of pancreatic ductal adenocarcinoma and affect the proliferation and migration of cancer cells. PMID:25742499
Novel strategies for managing pancreatic cancer. PMID:25356034
Pancreatic Cancer Database: an integrative resource for pancreatic cancer. PMID:24839966 -
The Pancreatic Expression database: 2011 update
PubMed citations: 16.
16 articles citing: The Pancreatic Expression database: 2011 update
Systems Biology and Experimental Model Systems of Cancer. PMID:33086677
The A818-6 system as an in-vitro model for studying the role of the transportome in pancreatic cancer. PMID:32228510
Comparison of tumour and serum specific microRNA changes dissecting their role in pancreatic ductal adenocarcinoma: a meta-analysis. PMID:31795960
Disorders noticed during development of pancreatic cancer: potential opportunities for early and effective diagnostics and therapy. PMID:29472816
The Pancreatic Expression Database: 2018 update. PMID:29059374
MicroRNA Targeted Therapeutic Approach for Pancreatic Cancer. PMID:26929739
Pancreatic preneoplastic lesions plasma signatures and biomarkers based on proteome profiling of mouse models. PMID:26512875
Sgo1 is a potential therapeutic target for hepatocellular carcinoma. PMID:25638162
miR-148a- and miR-216a-regulated oncolytic adenoviruses targeting pancreatic tumors attenuate tissue damage without perturbation of miRNA activity. PMID:24895996
The pancreatic expression database: recent extensions and updates. PMID:24163255
Molecular analysis of precursor lesions in familial pancreatic cancer. PMID:23372777
Reuse of public genome-wide gene expression data. PMID:23269463
Identification of germline genomic copy number variation in familial pancreatic cancer. PMID:22665139
Integration of proteomics into systems biology of cancer. PMID:22407608
A global insight into a cancer transcriptional space using pancreatic data: importance, findings and flaws. PMID:21724610
Using BioMart as a framework to manage and query pancreatic cancer data. PMID:21666272 -
Using BioMart as a framework to manage and query pancreatic cancer data
PubMed citations: 7.
7 articles citing: Using BioMart as a framework to manage and query pancreatic cancer data
ESCC ATLAS: A population wide compendium of biomarkers for Esophageal Squamous Cell Carcinoma. PMID:30143675
The BioMart community portal: an innovative alternative to large, centralized data repositories. PMID:25897122
Human cancer databases (review). PMID:25369839
BioMart: driving a paradigm change in biological data management. PMID:22083790
BioMart Central Portal: an open database network for the biological community. PMID:21930507
BioMart: a data federation framework for large collaborative projects. PMID:21930506
International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data. PMID:21930502 -
The Pancreatic Expression Database: 2018 update
PubMed citations: 5.
5 articles citing: The Pancreatic Expression Database: 2018 update
DNA Methylation of PI3K/AKT Pathway-Related Genes Predicts Outcome in Patients with Pancreatic Cancer: A Comprehensive Bioinformatics-Based Study. PMID:34944974
Non-coding RNAs in pancreatic ductal adenocarcinoma: New approaches for better diagnosis and therapy. PMID:33831655
The A818-6 system as an in-vitro model for studying the role of the transportome in pancreatic cancer. PMID:32228510
SMAC, a computational system to link literature, biomedical and expression data. PMID:31324861
Ocoxin Oral Solution Exerts an Antitumoral Effect in Pancreatic Cancer and Reduces the Stromal-Mediated Chemoresistance. PMID:30946238
Tags:
Tags
More detailed information about this field from each metasource.
cancer
metasource: Fairsharing.org
version: None
literature curation
metasource: Fairsharing.org
version: None
methylation
metasource: Fairsharing.org
version: None
micro rna
metasource: Fairsharing.org
version: None
other molecular biology databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
drugs and drug design
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
omics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
oncology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Tags
More detailed information about this field from each metasource.
cancer
metasource: Fairsharing.orgversion: None
literature curation
metasource: Fairsharing.orgversion: None
methylation
metasource: Fairsharing.orgversion: None
micro rna
metasource: Fairsharing.orgversion: None
other molecular biology databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
drugs and drug design
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
omics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
oncology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
cancer literature curation methylation micro rna molecular biology drug functional, regulatory and non-coding rna gene expression omics oncology
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