CNAdbCC
CNAdbCC is a curated database for copy number aberrations analysis and visualization of cervical cancer. Currently, the database contains about 1,000 dataset samples mainly integrated by affymetrix and aligent platform. Affymetrix is based on light-controlled situ synthesis of DNA microarrays, and is the highest density and widely used chip preparation technology. In addition, agilent aCGH (array-based Comparative Genomic Hybridization) platform also provides high performance, high resolution chip data. The raw array data were collected from GEO (Gene Expression Omnibus) and TCGA (The Cancer GenomeAtlas) databases. Genomic DNA copy number variations (CNVs), a type of structure variations, is one of the key hallmarks of carcinogenesis.
Description
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CNAdbCC is a curated database for copy number aberrations analysis and visualization of cervical cancer. Currently, the database contains about 1,000 dataset samples mainly integrated by affymetrix and aligent platform. Affymetrix is based on light-controlled situ synthesis of DNA microarrays, and is the highest density and widely used chip preparation technology. In addition, agilent aCGH (array-based Comparative Genomic Hybridization) platform also provides high performance, high resolution chip data. The raw array data were collected from GEO (Gene Expression Omnibus) and TCGA (The Cancer GenomeAtlas) databases. Genomic DNA copy number variations (CNVs), a type of structure variations, is one of the key hallmarks of carcinogenesis.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:27.687062
Webpage:
http://cailab.labshare.cn/CNAdbCC/Webpage
More detailed information about this field from each metasource.
http://cailab.labshare.cn/CNAdbCC/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:27.687062
Publications:
Publications
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Genome-wide somatic copy number alteration analysis and database construction for cervical cancer
PMID: 31901979
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:27.687062
Publications
More detailed information about this field from each metasource.
Genome-wide somatic copy number alteration analysis and database construction for cervical cancer
PMID: 31901979
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:27.687062
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Genome-wide somatic copy number alteration analysis and database construction for cervical cancer
PubMed citations: 3.
3 articles citing: Genome-wide somatic copy number alteration analysis and database construction for cervical cancer
Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer. PMID:34532318
Reclassification of Kidney Clear Cell Carcinoma Based on Immune Cell Gene-Related DNA CpG Pairs. PMID:33672457
A Methylation-Based Reclassification of Bladder Cancer Based on Immune Cell Genes. PMID:33092083
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oncology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:27.687062
microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:27.687062
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:27.687062
dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:27.687062
genetic variation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:27.687062
Tags
More detailed information about this field from each metasource.
oncology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:27.687062
microarray experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:27.687062
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:27.687062
dna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:27.687062
genetic variation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:27.687062
oncology microarray experiment gene expression dna genetic variation
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