Tag: microarray experiment


Found 56 sources
Source Match ReputationScore*

Gene Expression Omnibus


The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to dat ...
100%

miRBase Sequence Database


The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. The miRBase Registry continues to provide gene hunters with unique names for novel miRNA gene ...
71%

TarBase


DIANA-TarBase was initially released in 2006 and it was the first database aiming to catalogue published experimentally validated miRNA:gene interactions. DIANA-TarBase (v7.0), provides hundreds of thousands of high quality manually curated experimen ...
55%

BRENDA tissue / enzyme source


A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.
52%

FlyAtlas 2


FlyAtlas 2 is the RNA-Seq successor to the original FlyAtlas (which was based on microarray analysis). Specifically, FlyAtlas 2 now provides access to: transcript information, sex-specific data for adult somatic tissues, and micro-RNA genes. FlyAtlas ...
51%

Arabidopsis eFP Browser


An ""Electronic Fluorescent Pictograph"" browser for exploring and analyzing large-scale biological data sets (using example of Arabidopsis). Explores microarray and other data for hypothesis generation. eFP Browser engine paints data from large-scal ...
49%

miRTarBase


As a database, miRTarBase has accumulated more than fifty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after data mining of the text systematically to filter research articles related to fu ...
49%

Universal PBM Resource for Oligonucleotide Binding Evaluation


The UniPROBE (Universal PBM Resource for Oligonucleotide Binding Evaluation) database hosts data generated by universal protein binding microarray (PBM) technology on the in vitro DNA binding specificities of proteins.
48%

DNA Data Bank of Japan


Annotated collection of all publicly available nucleotide and protein sequences. DDBJ collects sequence data mainly from Japanese researchers, as well as researchers in any other countries. DDBJ is part of the International Nucleotide Sequence Databa ...
48%

Princeton University MicroArray database


The Princeton University MicroArray database (PUMAdb) stores raw and normalized data from microarray experiments, as well as their corresponding image files. In addition, PUMAdb provides interfaces for data retrieval, analysis and visualization.
46%

AmoebaDB


AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first released, AmoebaDB contained the genomes of three Entamoeba species. AmoebaDB int ...
44%

GeneWeaver


The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enables discovery of relationships among genes, variants, traits, drugs, enviro ...
44%

MethylomeDB


This resource details DNA methylation profiles in human and mouse brain. This database includes genome-wide DNA methylation profiles for human and mouse brains. The DNA methylation profiles were generated by Methylation Mapping Analysis by Paired-end ...
42%

miRNEST


miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. The data comes from our computational predictions (new miRNAs, targets, mi ...
41%

SOURCE


The explosion in the number of functional genomic datasets generated with tools such as DNA microarrays has created a critical need for resources that facilitate the interpretation of large-scale biological data. SOURCE is a web-based database that b ...
41%

PrognoScan


Database for meta-analysis of the prognostic value of genes. It has features of 1) a large collection of publicly available cancer microarray datasets with clinical annotation, as well as 2) a tool for assessing the biological relationship between ge ...
41%

Affymetrix NetAffx Analysis Center


Allows correlation of GeneChip array results with array design and annotation information; provides access to array content information, including probe sequences and gene annotations; free registration is required.
40%

Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis


MIRAGE (Minimum Information Required for A Glycomics Experiment was created to improve the quality of glycomics data in the scientific literature. These guidelines were drafted to be intentionally minimal and apply only to information required for ge ...
39%

Gene Expression Barcode


Gene expression data sorted into two groups: expressed and not expressed genes
39%

miRDB


miRNA target prediction and functional annotation
39%

SilkDB


The SilkDB is an open-access database for genome biology of the silkworm (Bombyx mori). SilkDB contains the genomic data, including genome assembly, gene annotation, chromosomal mapping, orthologous relationship and experiment data, such as microarra ...
38%

Plant MicroRNA Database (PMRD)


The database integrates available plant miRNA data deposited in public databases, gleaned from the recent literature, and data generated in-house. This database contains sequence information, secondary structure, target genes, expression profiles and ...
38%

CIBEX


Public repository for gene expression experimental data. The database system is compliant with the MIAME standard.
37%

MERAV


Metabolic gEne RApid Visualizer
37%

Multi Experiment Matrix (MEM)


MEM (Multi-Experiment Matrix) provides gene expression similarity searches, visualisation and analyses across many datasets from ArrayExpress and GEO. MEM uses rank aggregation to merge information from different datasets into a single global orderin ...
37%

Genomic Expression Archive


Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and ...
37%

Tissue Microarray Ontology


Tissue microarrays (TMA) are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential ...
36%

Longhorn Array Database


The Longhorn Array Database (LAD) is a MIAME‐compliant microarray database that operates on PostgreSQL and Linux. It is a free, completely open‐source, and provides a systematic and proven environment in which vast experiment sets can be safely archi ...
35%

PLANdbAffy


Probe-Level Annotation Database for Affymetrix microarrays
34%

DNA Methylation Interactive Visualization Database


DNMIVD is a comprehensive annotation and interactive visualization database for DNA methylation profile of diverse human cancer constructed with high throughput microarray data from TCGA and GEO databases, and it also integrates some data from Pancan ...
34%

mESAdb


microRNA Expression and Sequence Analysis Database
34%

Ashbya Genome Database


The Ashbya Genome Database (AGD) is a genome/transcriptome database containing gene annotation and high-density oligonucleotide microarray expression data for protein-coding genes from Ashbya gossypii and the model organism Saccharomyces cerevisiae.
33%

KnockTF


Transcription factors (TFs) and their target genes have important functions in human diseases and biological processes. Gene expression profile analysis before and after knockdown or knockout is one of the most important strategies for obtaining targ ...
32%

EndoDB


a database of endothelial cell transcriptomics data. EndoDB The endothelial cell database (EndoDB) is a freely accessible added-value database that facilitates bench scientists to unlock the untapped potential of publicly available (single cell) tra ...
31%

[email protected]


[email protected] is a microbial gene expression and comparative genomic database containing microarray datasets.
31%

ACID


The Array Clone Information Database (ACID) is a searchable resource for information about human, mouse, and rat cDNA clones. Each clone contains information about the assigned UniGene cluster(s), location in the full-length transcript, assigned gene ...
31%

ReGEO


Restructured version of Gene Expression Omnibus (GEO) that provides a user friendly interface for curating GEO database
30%

SoyFN


Knowledge database of Soybean Functional gene Networks and miRNA functional networks.
30%

PhylOPDb


Phylogenetic Oligonucleotide Probe Database. Provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes.
30%

SigReannot-mart


Re-annotating oligo sets used for expression microarrays is essential to supply biologists with up-to-date annotations. The tool is a query environment populated with regularly updated annotations for different oligo sets. It permits easy extraction ...
30%

GlyMDB


Glycan Microarray Database and Analysis Toolset.
30%

Animal-ImputeDB


A comprehensive database with multiple animal reference panels for genotype imputation.
30%

PEATmoss


A unified gene expression atlas for the model plant Physcomitrella patens. PEATmoss is an interactive tool to visualize gene expression data. These help pages explain several ways to query the expression data and to visualize the results, enabling t ...
30%

NimbleGen Gene Description


The NimbleGen Gene Description is a text tabular format that contains descriptive information (annotation) about the genes on an array. Please note that Roche issued a statement in 2012 as follows: "As previously announced in June 2012, Roche has exi ...
30%

TCGA-LGG


Engrailed 1 overexpression as a potential prognostic marker in Lower Grade Glioma.
29%

MitoGenesisDB


Expression data to explore spatio-temporal dynamics of mitochondrial biogenesis
28%

Haloarchaeal Genomes


Haloarchaeal genomes database.
27%

AOE


AOE (All Of gene Expression) - an integrated index for public gene expression databases.
27%

PCxN


Powerful new framework for interrogation of global pathway relationships.
27%

TRANSNAP


TRANSNAP is a web database providing comprehensive information on Japanese pear transcriptome.
27%

Hepamine


A Liver Disease Microarray Database, Visualization Platform and Data-Mining Resource. Providing Bioinformatics Data For The Study Of Liver Diseases. a liver disease microarray database, visualization platform and data-mining resource. Hepamine was ...
27%

HAHmiR DB


A Server Platform For High Altitude Human miRNA-Gene Coregulatory Networks And Associated Regulatory-Circuits. HAHmiR DB (High-Altitude Human miRNA Database) is a unique, comprehensive, curated collection of miRNAs that have been experimentally vali ...
27%

BDdb


BDdb is a comprehensive database associated with birth-defect-related diseases. It consists of multi-omics datasets involving tens of common birth-defect diseases, and BDdb supplements more than 2000 biomarkers belonging to 22 types of birth defects.
27%

DepMap


Extracting Biological Insights from the Project Achilles Genome-Scale CRISPR Screens in Cancer Cell Lines | The Cancer Dependency Map Project at Broad Institute | A resource of data and computational tools to expose the vulnerabilities of cancer, and ...
27%

SNPs


Genome-wide analysis of polymorphisms identified domestication-associated polymorphism desert carrying important rice grain size/weight QTL | By using SNP-Seek, you abide by the data use license stated | Query for SNPs from the 3000 genome project | ...
27%

MalariaGEN


An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples. Plasmodium falciparum Community Project. Dried blood spot collection. Photo credit: Will Hamilton. HiSeq machines at the Wellcome Trust Sanger Institute. Photo c ...
27%

*ReputationScore indicates how established a given datasource is. Find out more.




Need help integrating and/or managing biomedical data?