Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis
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Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIRAGE Glycan Microarray Analysis
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIRAGE Glycan Microarray Analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Other names: MIRAGE Glycan Microarray Analysis
Names
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Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIRAGE Glycan Microarray Analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIRAGE (Minimum Information Required for A Glycomics Experiment was created to improve the quality of glycomics data in the scientific literature. These guidelines were drafted to be intentionally minimal and apply only to information required for generating interpretable data from a glycan array experiment. We have identified 8 areas, numbered in the workflow shown below, that are required for generating an unambiguous glycan array in the first instance and obtaining binding data. For each numbered component of the workflow area we provide guidelines for the minimal information that should be provided in reporting results.
Description
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MIRAGE (Minimum Information Required for A Glycomics Experiment was created to improve the quality of glycomics data in the scientific literature. These guidelines were drafted to be intentionally minimal and apply only to information required for generating interpretable data from a glycan array experiment. We have identified 8 areas, numbered in the workflow shown below, that are required for generating an unambiguous glycan array in the first instance and obtaining binding data. For each numbered component of the workflow area we provide guidelines for the minimal information that should be provided in reporting results.
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://www.beilstein-institut.de/en/projects/mirage/guidelines#glycan_microarraysWebpage
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http://www.beilstein-institut.de/en/projects/mirage/guidelines#glycan_microarrays
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
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MIRAGE: the minimum information required for a glycomics experiment
PMID: 24653214
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
PMID: 27993942
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
MIRAGE: the minimum information required for a glycomics experiment
PMID: 24653214
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
PMID: 27993942
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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MIRAGE: the minimum information required for a glycomics experiment
PubMed citations: 53.
53 articles citing: MIRAGE: the minimum information required for a glycomics experiment
Mass spectrometric quantification of plasma glycosphingolipids in human GM3 ganglioside deficiency. PMID:34917767
Serum N-Glycome Diversity in Teleost and Chondrostrean Fishes. PMID:34859056
Mass spectrometry in clinical glycomics: The path from biomarker identification to clinical implementation. PMID:34820521
Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia. PMID:34646384
Glycosylation: Rising Potential for Prostate Cancer Evaluation. PMID:34359624
Platelet and myeloid cell phenotypes in a rat model of Fabry disease. PMID:34320241
The Hitchhiker's guide to glycoproteomics. PMID:34282822
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Human Influenza Virus Hemagglutinins Contain Conserved Oligomannose N-Linked Glycans Allowing Potent Neutralization by Lectins. PMID:32298658
Glycan Profiles of gp120 Protein Vaccines from Four Major HIV-1 Subtypes Produced from Different Host Cell Lines under Non-GMP or GMP Conditions. PMID:31941770
Natural and Synthetic Sialylated Glycan Microarrays and Their Applications. PMID:31572731
Endotracheal tube mucus as a source of airway mucus for rheological study. PMID:31389736
Sulfated Lewis A trisaccharide on oviduct membrane glycoproteins binds bovine sperm and lengthens sperm lifespan. PMID:31337705
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Revisiting the Language of Glycoscience: Readers, Writers and Erasers in Carbohydrate Biochemistry. PMID:31317590
Protein Glycosylation and Tumor Microenvironment Alterations Driving Cancer Hallmarks. PMID:31157165
MIReAD, a minimum information standard for reporting arthropod abundance data. PMID:31024009
Serum IgM Glycosylation Associated with Tuberculosis Infection in Mice. PMID:30918063
GRITS Toolbox-a freely available software for processing, annotating and archiving glycomics mass spectrometry data. PMID:30913289
Identification of a secondary binding site in human macrophage galactose-type lectin by microarray studies: Implications for the molecular recognition of its ligands. PMID:30504228
Protein-Specific Analysis of Invertebrate Glycoproteins. PMID:30276752
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
Meeting Report of the International Life Science Integration Workshop 2018. PMID:29982395
Emerging glycobiology tools: A renaissance in accessibility. PMID:29759530
Airway glycomic and allergic inflammatory consequences resulting from keratan sulfate galactose 6-O-sulfotransferase (CHST1) deficiency. PMID:29659839
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award. PMID:29644549
Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma. PMID:29619343
Neuropathic pain in a Fabry disease rat model. PMID:29563343
Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses. PMID:29553244
Over forty years of bladder cancer glycobiology: Where do glycans stand facing precision oncology? PMID:29207682
GLYDE-II: The GLYcan data exchange format. PMID:28955652
GlyTouCan: an accessible glycan structure repository. PMID:28922742
Automated N-Glycosylation Sequencing Of Biopharmaceuticals By Capillary Electrophoresis. PMID:28916753
Building a PGC-LC-MS N-glycan retention library and elution mapping resource. PMID:28905148
COG7 deficiency in Drosophila generates multifaceted developmental, behavioral and protein glycosylation phenotypes. PMID:28883096
Glycomic and glycoproteomic analysis of glycoproteins-a tutorial. PMID:28585084
Unlocking Cancer Glycomes from Histopathological Formalin-fixed and Paraffin-embedded (FFPE) Tissue Microdissections. PMID:28122943
Recent Advances in the Analysis of Complex Glycoproteins. PMID:28105826
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. PMID:27993942
The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. PMID:27654115
Minimum information required for a DMET experiment reporting. PMID:27548815
Glycomics & Glycoproteomics in Glycoconjugate journal. PMID:27178342
Maturing Glycoproteomics Technologies Provide Unique Structural Insights into the N-glycoproteome and Its Regulation in Health and Disease. PMID:26929216
Glycomics and glycoproteomics of membrane proteins and cell-surface receptors: Present trends and future opportunities. PMID:26872045
Algorithms and design strategies towards automated glycoproteomics analysis. PMID:26728195
Site-specific O-Glycosylation Analysis of Human Blood Plasma Proteins. PMID:26598643
Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. PMID:26511985
GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics. PMID:26314736
Preventing E-cadherin aberrant N-glycosylation at Asn-554 improves its critical function in gastric cancer. PMID:26189796
Clinical Glycomics Employing Graphitized Carbon Liquid Chromatography-Mass Spectrometry. PMID:25750456
GlycoPattern: a web platform for glycan array mining. PMID:25143288 -
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
PubMed citations: 37.
37 articles citing: The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
Serum N-Glycome Diversity in Teleost and Chondrostrean Fishes. PMID:34859056
Mapping Molecular Recognition of β1,3-1,4-Glucans by a Surface Glycan-Binding Protein from the Human Gut Symbiont Bacteroides ovatus. PMID:34817219
The dCache Chemoreceptor TlpA of Helicobacter pylori Binds Multiple Attractant and Antagonistic Ligands via Distinct Sites. PMID:34340539
Defining the Glycosaminoglycan Interactions of Complement Factor H-Related Protein 5. PMID:34193601
Noncovalent microarrays from synthetic amino-terminating glycans: Implications in expanding glycan microarray diversity and platform comparison. PMID:33978739
Synthetic O-acetylated sialosides facilitate functional receptor identification for human respiratory viruses. PMID:33753916
Mucin O-glycans suppress quorum-sensing pathways and genetic transformation in Streptococcus mutans. PMID:33737747
Structural analysis of carbohydrate binding by the macrophage mannose receptor CD206. PMID:33545173
High-Sensitivity Glycan Profiling of Blood-Derived Immunoglobulin G, Plasma, and Extracellular Vesicle Isolates with Capillary Zone Electrophoresis-Mass Spectrometry. PMID:33433994
Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication. PMID:33349503
Limited Neonatal Carbohydrate-Specific Antibody Repertoire Consecutive to Partial Prenatal Transfer of Maternal Antibodies. PMID:33162988
Glycan array analysis of Pholiota squarrosa lectin and other fucose-oriented lectins. PMID:33021632
Chikungunya Virus Strains from Each Genetic Clade Bind Sulfated Glycosaminoglycans as Attachment Factors. PMID:32999033
Tools for generating and analyzing glycan microarray data. PMID:32983270
Increased Antibody Response to Fucosylated Oligosaccharides and Fucose-Carrying Bacteroides Species in Crohn's Disease. PMID:32765449
Human Influenza Virus Hemagglutinins Contain Conserved Oligomannose N-Linked Glycans Allowing Potent Neutralization by Lectins. PMID:32298658
Microarray analyses of closely related glycoforms reveal different accessibilities of glycan determinants on N-glycan branches. PMID:32026940
Mannan detecting C-type lectin receptor probes recognise immune epitopes with diverse chemical, spatial and phylogenetic heterogeneity in fungal cell walls. PMID:31999794
Advances in Tools to Determine the Glycan-Binding Specificities of Lectins and Antibodies. PMID:31848260
Salt-free fractionation of complex isomeric mixtures of glycosaminoglycan oligosaccharides compatible with ESI-MS and microarray analysis. PMID:31719635
Natural and Synthetic Sialylated Glycan Microarrays and Their Applications. PMID:31572731
CD23 is a glycan-binding receptor in some mammalian species. PMID:31488546
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Glycan Markers of Human Stem Cells Assigned with Beam Search Arrays. PMID:31308253
Sulfated Glycosaminoglycans as Viral Decoy Receptors for Human Adenovirus Type 37. PMID:30871026
Microbe-focused glycan array screening platform. PMID:30670663
Single human B cell-derived monoclonal anti-Candida antibodies enhance phagocytosis and protect against disseminated candidiasis. PMID:30538246
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Novel monoclonal antibody L2A5 specifically targeting sialyl-Tn and short glycans terminated by alpha-2-6 sialic acids. PMID:30111774
Emerging glycobiology tools: A renaissance in accessibility. PMID:29759530
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award. PMID:29644549
A comprehensive Caenorhabditis elegans N-glycan shotgun array. PMID:29325093
O-Glycome Beam Search Arrays for Carbohydrate Ligand Discovery. PMID:29183914
Mining High-Complexity Motifs in Glycans: A New Language To Uncover the Fine Specificities of Lectins and Glycosidases. PMID:29058413
GlyTouCan: an accessible glycan structure repository. PMID:28922742
Profiling Anti-Neu5Gc IgG in Human Sera with a Sialoglycan Microarray Assay. PMID:28745644
New insights into influenza A specificity: an evolution of paradigms. PMID:28675835
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microarray experiment
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
microarray experiment
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE Glycan Microarray Analysis; Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis; DOI: https://doi.org/10.25504/FAIRsharing.sbfp9e; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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