R31NJMO3 last accessed: 2022-11-04

Other names: GEA

Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.

Webpage:

https://www.ddbj.nig.ac.jp/gea

Licence:

Name: Public Domain
URL: https://www.ddbj.nig.ac.jp/policies-e.html#license

Publications:

Publications
More detailed information about this field from each metasource.

DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data
PMID: 30357349
metasource: Fairsharing.org
version: FAIRsharing.org: GEA; Genomic Expression Archive; DOI: https://doi.org/10.25504/FAIRsharing.hESBcy; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data PubMed citations: 16.

16 articles citing: DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data

Comparison of Oxidative and Hypoxic Stress Responsive Genes from Meta-Analysis of Public Transcriptomes. PMID:34944646
DNA Data Bank of Japan (DDBJ) update report 2021. PMID:34751405
ARGEOS: A New Bioinformatic Tool for Detailed Systematics Search in GEO and ArrayExpress. PMID:34681124
Design of Monovalent and Chimeric Tetravalent Dengue Vaccine Using an Immunoinformatics Approach. PMID:34602919
Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible Genes. PMID:34065451
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. PMID:33711481
Meta-Analysis of Oxidative Transcriptomes in Insects. PMID:33669076
DDBJ update: streamlining submission and access of human data. PMID:33156332
All of gene expression (AOE): An integrated index for public gene expression databases. PMID:31978081
Open Data for Differential Network Analysis in Glioma. PMID:31952211
Meta-Analysis of Hypoxic Transcriptomes from Public Databases. PMID:31936636
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. PMID:31732741
DDBJ Database updates and computational infrastructure enhancement. PMID:31724722
A multi-modal data resource for investigating topographic heterogeneity in patient-derived xenograft tumors. PMID:31672976
IPD-IMGT/HLA Database. PMID:31667505
Database resources of the National Center for Biotechnology Information. PMID:31602479

Tags:

Tags
More detailed information about this field from each metasource.

dna microarray
metasource: Fairsharing.org
version: FAIRsharing.org: GEA; Genomic Expression Archive; DOI: https://doi.org/10.25504/FAIRsharing.hESBcy; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: re3data.org
version: re3data.org: Genomic Expression Archive; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMO3 last accessed: 2022-11-04

gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: GEA; Genomic Expression Archive; DOI: https://doi.org/10.25504/FAIRsharing.hESBcy; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: re3data.org
version: re3data.org: Genomic Expression Archive; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMO3 last accessed: 2022-11-04

gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: GEA; Genomic Expression Archive; DOI: https://doi.org/10.25504/FAIRsharing.hESBcy; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

microarray experiment
metasource: Fairsharing.org
version: FAIRsharing.org: GEA; Genomic Expression Archive; DOI: https://doi.org/10.25504/FAIRsharing.hESBcy; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: GEA; Genomic Expression Archive; DOI: https://doi.org/10.25504/FAIRsharing.hESBcy; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

snp genotyping
metasource: re3data.org
version: re3data.org: Genomic Expression Archive; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMO3 last accessed: 2022-11-04

epigenetics
metasource: re3data.org
version: re3data.org: Genomic Expression Archive; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMO3 last accessed: 2022-11-04

functional genomics
metasource: re3data.org
version: re3data.org: Genomic Expression Archive; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMO3 last accessed: 2022-11-04

single-nucleotide polymorphism
metasource: re3data.org
version: re3data.org: Genomic Expression Archive; editing status 2021-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMO3 last accessed: 2022-11-04

dna microarray gene expression gene expression microarray experiment single nucleotide polymorphism snp genotyping epigenetics functional genomics single-nucleotide polymorphism

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ArrayExpress

MicroArray Gene Expression Tabular Format

DNA Data Bank of Japan

Gene Expression Omnibus

Expression Atlas

DDBJ Trace Archive

Minimum Information About a Microarray Experiment

DDBJ Sequence Read Archive

Gemma

Microarray and Gene Expression Data Ontology

DDBJ BioProject

CIBEX

DDBJ Biosample

Single Nucleotide Polymorphism Ontology

Japanese Genotype-phenotype Archive

BioStudies

Princeton University MicroArray database

MGI Mouse Gene Expression Database

Bgee DataBase for Gene Expression Evolution

Affymetrix NetAffx Analysis Center