Longhorn Array Database
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Longhorn Array Database
metasource: Fairsharing.org
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LAD
metasource: Fairsharing.org
version: None
Names
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Longhorn Array Database
metasource: Fairsharing.orgversion: None
LAD
metasource: Fairsharing.orgversion: None
Names
More detailed information about this field from each metasource.
Longhorn Array Database
metasource: Fairsharing.orgversion: None
LAD
metasource: Fairsharing.orgversion: None
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The Longhorn Array Database (LAD) is a MIAME‐compliant microarray database that operates on PostgreSQL and Linux. It is a free, completely open‐source, and provides a systematic and proven environment in which vast experiment sets can be safely archived, securely accessed, biologically annotated, quantitatively analyzed, and visually explored. This unit provides the complete set of information needed to successfully deploy, configure, and use LAD for the purposes of two‐color DNA microarray analysis and visualization.
Description
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The Longhorn Array Database (LAD) is a MIAME‐compliant microarray database that operates on PostgreSQL and Linux. It is a free, completely open‐source, and provides a systematic and proven environment in which vast experiment sets can be safely archived, securely accessed, biologically annotated, quantitatively analyzed, and visually explored. This unit provides the complete set of information needed to successfully deploy, configure, and use LAD for the purposes of two‐color DNA microarray analysis and visualization.
metasource: Fairsharing.orgversion: None
Webpage:
http://darwin.biochem.okstate.edu/lad/ilat/Webpage
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Publications:
Publications
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The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
PMID: 12930545
metasource: Fairsharing.org
version: None
Microarray data visualization and analysis with the Longhorn Array Database (LAD)
PMID: 18428730
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
PMID: 12930545
metasource: Fairsharing.org
version: None
Microarray data visualization and analysis with the Longhorn Array Database (LAD)
PMID: 18428730
metasource: Fairsharing.org
version: None
-
The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
PubMed citations: 41.
41 articles citing: The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
Mapping functional transcription factor networks from gene expression data. PMID:23636944
Chronic carvedilol treatment partially reverses the right ventricular failure transcriptional profile in experimental pulmonary hypertension. PMID:23632417
Up-regulation of microRNAs in brain of human alcoholics. PMID:21651580
Expression Profiling in Alcoholism Research. PMID:21512613
Molecular profiles of drinking alcohol to intoxication in C57BL/6J mice. PMID:21223303
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets. PMID:20385592
The porcelain crab transcriptome and PCAD, the porcelain crab microarray and sequence database. PMID:20174471
The filamentous fungal gene expression database (FFGED). PMID:20025988
WebArrayDB: cross-platform microarray data analysis and public data repository. PMID:19602526
Reconstructing generalized logical networks of transcriptional regulation in mouse brain from temporal gene expression data. PMID:19300527
ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets. PMID:19014503
Health 2.0 and Medicine 2.0: tensions and controversies in the field. PMID:18682374
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient. PMID:18564431
Bioinformatic tools for inferring functional information from plant microarray data: tools for the first steps. PMID:18528524
WdStuAp, an APSES transcription factor, is a regulator of yeast-hyphal transitions in Wangiella (Exophiala) dermatitidis. PMID:17693595
Anaerobic regulation of Shigella flexneri virulence: ArcA regulates Fur and iron acquisition genes. PMID:17660284
Quantitative gene expression assessment identifies appropriate cell line models for individual cervical cancer pathways. PMID:17493265
A method of microarray data storage using array data type. PMID:17392028
The Stanford Microarray Database: implementation of new analysis tools and open source release of software. PMID:17182626
SLIMarray: lightweight software for microarray facility management. PMID:17147785
MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies. PMID:16987406
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology. PMID:16756676
PI3K signaling and miRNA expression during the response of quiescent human fibroblasts to distinct proliferative stimuli. PMID:16737555
Transcriptional signatures of cellular plasticity in mice lacking the alpha1 subunit of GABAA receptors. PMID:16723524
MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation. PMID:16597336
MicroGen: a MIAME compliant web system for microarray experiment information and workflow management. PMID:16351755
Iron and fur regulation in Vibrio cholerae and the role of fur in virulence. PMID:16299312
maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination. PMID:16269077
Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation. PMID:16113288
An optimized isolation and labeling platform for accurate microRNA expression profiling. PMID:16043497
Storage and retrieval of microarray data and open source microarray database software. PMID:15988049
The bioinformatics resource for oral pathogens. PMID:15980574
Profile and analysis of gene expression changes during early development in germinating spores of Ceratopteris richardii. PMID:15965014
Toward supportive data collection tools for plant metabolomics. PMID:15888680
MARS: microarray analysis, retrieval, and storage system. PMID:15836795
The global transcriptional effects of the human papillomavirus E6 protein in cervical carcinoma cell lines are mediated by the E6AP ubiquitin ligase. PMID:15731267
The heme activator protein Hap1 represses transcription by a heme-independent mechanism in Saccharomyces cerevisiae. PMID:15654089
Quantitative analysis of tumor mitochondrial RNA using microarray. PMID:15609393
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. PMID:15608263
Global role of TATA box-binding protein recruitment to promoters in mediating gene expression profiles. PMID:15340072
Genome-wide analysis of the biology of stress responses through heat shock transcription factor. PMID:15169889 -
Microarray data visualization and analysis with the Longhorn Array Database (LAD)
PubMed citations: 2.
2 articles citing: Microarray data visualization and analysis with the Longhorn Array Database (LAD)
Djeen (Database for Joomla!'s Extensible Engine): a research information management system for flexible multi-technology project administration. PMID:23742665
Molecular profiles of drinking alcohol to intoxication in C57BL/6J mice. PMID:21223303
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dna microarray
metasource: Fairsharing.org
version: None
microarray experiment
metasource: Fairsharing.org
version: None
Tags
More detailed information about this field from each metasource.
dna microarray
metasource: Fairsharing.orgversion: None
microarray experiment
metasource: Fairsharing.orgversion: None
dna microarray microarray experiment
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