Affymetrix NetAffx Analysis Center
Other names: affymetrix_netaffx_analysis_center
Allows correlation of GeneChip array results with array design and annotation information; provides access to array content information, including probe sequences and gene annotations; free registration is required.
Description
More detailed information about this field from each metasource.
Allows correlation of GeneChip array results with array design and annotation information; provides access to array content information, including probe sequences and gene annotations; free registration is required.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
Webpage:
http://www.affymetrix.com/analysis/index.affxWebpage
More detailed information about this field from each metasource.
http://www.affymetrix.com/analysis/index.affx
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
Publications:
Publications
More detailed information about this field from each metasource.
NetAffx: Affymetrix probesets and annotations
PMID: 12519953
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
Publications
More detailed information about this field from each metasource.
NetAffx: Affymetrix probesets and annotations
PMID: 12519953
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
-
NetAffx: Affymetrix probesets and annotations
PubMed citations: 181.
181 articles citing: NetAffx: Affymetrix probesets and annotations
CeDR Atlas: a knowledgebase of cellular drug response. PMID:34634794
Transcriptome Analysis of Kidney Grafts Subjected to Normothermic Ex Vivo Perfusion Demonstrates an Enrichment of Mitochondrial Metabolism Genes. PMID:34258386
The IBI1 Receptor of β-Aminobutyric Acid Interacts with VOZ Transcription Factors to Regulate Abscisic Acid Signaling and Callose-Associated Defense. PMID:32717347
Gene Expression Studies to Identify Significant Genes in AR, MTOR, MAPK Pathways and their Overlapping Regulatory Role in Prostate Cancer. PMID:31136301
TAAR1 levels and sub-cellular distribution are cell line but not breast cancer subtype specific. PMID:31111198
Feasibility of developing reliable gene expression modules from FFPE derived RNA profiled on Affymetrix arrays. PMID:30169535
Elastic Net Constrained Stereotype Logit Model for Ordered Categorical Data. PMID:30058001
Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation. PMID:29739334
A Bootstrap Based Measure Robust to the Choice of Normalization Methods for Detecting Rhythmic Features in High Dimensional Data. PMID:29456555
Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest. PMID:29244006
Genome-wide map of Apn1 binding sites under oxidative stress in Saccharomyces cerevisiae. PMID:28752642
PBMC transcriptome profiles identifies potential candidate genes and functional networks controlling the innate and the adaptive immune response to PRRSV vaccine in Pietrain pig. PMID:28278192
Transcriptomic Analysis of THP-1 Macrophages Exposed to Lipoprotein Hydrolysis Products Generated by Lipoprotein Lipase. PMID:28205069
Adrenal cortex expression quantitative trait loci in a German Holstein × Charolais cross. PMID:27716033
Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs. PMID:27528396
Accumulation of Extracellular Matrix in Advanced Lesions of Canine Distemper Demyelinating Encephalitis. PMID:27441688
What time is it? Deep learning approaches for circadian rhythms. PMID:27307647
High-performance web services for querying gene and variant annotation. PMID:27154141
Integrated genome browser: visual analytics platform for genomics. PMID:27153568
A network pharmacology approach reveals new candidate caloric restriction mimetics in C. elegans. PMID:26676933
Deciphering Cis-Regulatory Element Mediated Combinatorial Regulation in Rice under Blast Infected Condition. PMID:26327607
MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data. PMID:26314578
Combined Analysis of SNP Array Data Identifies Novel CNV Candidates and Pathways in Ependymoma and Mesothelioma. PMID:26185765
Interrogation of a context-specific transcription factor network identifies novel regulators of pluripotency. PMID:25336442
Genome-wide gene expression profile analyses identify CTTN as a potential prognostic marker in esophageal cancer. PMID:24551190
CNS Schwann cells display oligodendrocyte precursor-like potassium channel activation and antigenic expression in vitro. PMID:24487976
A transcriptional and metabolic signature of primary aneuploidy is present in chromosomally unstable cancer cells and informs clinical prognosis. PMID:24041940
MYRF is a membrane-associated transcription factor that autoproteolytically cleaves to directly activate myelin genes. PMID:23966833
Systematic review of genome-wide gene expression studies of bipolar disorder. PMID:23945090
A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration. PMID:23855655
Clinical value of prognosis gene expression signatures in colorectal cancer: a systematic review. PMID:23145004
Revealing the molecular mechanism of gastric cancer marker annexin A4 in cancer cell proliferation using exon arrays. PMID:22970268
AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities. PMID:22967011
FAM83A confers EGFR-TKI resistance in breast cancer cells and in mice. PMID:22886303
Chemocentric informatics approach to drug discovery: identification and experimental validation of selective estrogen receptor modulators as ligands of 5-hydroxytryptamine-6 receptors and as potential cognition enhancers. PMID:22537153
BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments. PMID:22536968
Heterogeneity of inflammatory and cytokine networks in chronic plaque psoriasis. PMID:22479649
Temporal transcriptional profiling of somatic and germ cells reveals biased lineage priming of sexual fate in the fetal mouse gonad. PMID:22438826
Meta-profiles of gene expression during aging: limited similarities between mouse and human and an unexpectedly decreased inflammatory signature. PMID:22413003
COUP-TFII controls mouse pancreatic β-cell mass through GLP-1-β-catenin signaling pathways. PMID:22292058
Jetset: selecting the optimal microarray probe set to represent a gene. PMID:22172014
Overview of biological database mapping services for interoperation between different 'omics' datasets. PMID:22155608
AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations. PMID:22054122
Measuring and analyzing tissue specificity of human genes and protein complexes. PMID:21970702
Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis. PMID:21818400
Extensive relationship between antisense transcription and alternative splicing in the human genome. PMID:21719572
A compendium of canine normal tissue gene expression. PMID:21655323
Identifier mapping performance for integrating transcriptomics and proteomics experimental results. PMID:21619611
GiSAO.db: a database for ageing research. PMID:21609420
Genome-wide expression profiling of five mouse models identifies similarities and differences with human psoriasis. PMID:21483750
A method for visualization of "omic" datasets for sphingolipid metabolism to predict potentially interesting differences. PMID:21415121
Microarray analysis of differential gene expression profile in peripheral blood cells of patients with human essential hypertension. PMID:21369372
Characterization and global gene expression of F- phenocopies during Escherichia coli biofilm formation. PMID:20809290
Genetic evidence of multiple loci in dystocia--difficult labour. PMID:20587075
R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases. PMID:20519200
Molecular mechanisms mediating the effect of mono-(2-ethylhexyl) phthalate on hormone-stimulated steroidogenesis in MA-10 mouse tumor Leydig cells. PMID:20463053
Gene expression profiles of lung adenocarcinoma linked to histopathological grading and survival but not to EGF-R status: a microarray study. PMID:20196851
TaNF-YC11, one of the light-upregulated NF-YC members in Triticum aestivum, is co-regulated with photosynthesis-related genes. PMID:20111976
Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data. PMID:20089164
Quantitative model for inferring dynamic regulation of the tumour suppressor gene p53. PMID:20085646
Disease gene characterization through large-scale co-expression analysis. PMID:20046828
Oligodendroglial differentiation induces mitochondrial genes and inhibition of mitochondrial function represses oligodendroglial differentiation. PMID:20005986
Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis. PMID:19969540
Identification of longevity-associated genes in long-lived Snell and Ames dwarf mice. PMID:19943135
PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays. PMID:19906711
Facilitating functional annotation of chicken microarray data. PMID:19811685
Genetical toxicogenomics in Drosophila identifies master-modulatory loci that are regulated by developmental exposure to lead. PMID:19737576
Integrating microRNA and mRNA expression profiles of neuronal progenitors to identify regulatory networks underlying the onset of cortical neurogenesis. PMID:19689821
The Epithelial Cell in Lung Health and Emphysema Pathogenesis. PMID:19662102
PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways. PMID:19474337
Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. PMID:19435500
GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. PMID:19420064
Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos. PMID:19393066
Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis. PMID:19320992
Recent developments in StemBase: a tool to study gene expression in human and murine stem cells. PMID:19284540
Influence of hyperthyroid conditions on gene expression in extraocular muscles of rats. PMID:19276241
Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees. PMID:19265541
TRUNCATULIX--a data warehouse for the legume community. PMID:19210766
Consistency analysis of redundant probe sets on affymetrix three-prime expression arrays and applications to differential mRNA processing. PMID:19165320
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network. PMID:19094223
ExonMiner: Web service for analysis of GeneChip Exon array data. PMID:19036125
Discovery of DNA methylation markers in cervical cancer using relaxation ranking. PMID:19025626
The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis. PMID:18803878
Escherichia coli harboring a natural IncF conjugative F plasmid develops complex mature biofilms by stimulating synthesis of colanic acid and Curli. PMID:18790864
Gene expression profile in colon cancer cells with respect to XIAP expression status. PMID:18704457
Molecular credentialing of rodent bladder carcinogenesis models. PMID:18670642
Genes regulated by caloric restriction have unique roles within transcriptional networks. PMID:18634819
Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells. PMID:18578872
Using the longest significance run to estimate region-specific p-values in genetic association mapping studies. PMID:18503718
Effects of leptin deficiency on postnatal lung development in mice. PMID:18467551
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. PMID:18460543
Transcriptional and metabolic adjustments in ADP-glucose pyrophosphorylase-deficient bt2 maize kernels. PMID:18287491
AILUN: reannotating gene expression data automatically. PMID:17971777
X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis. PMID:17932061
Linking microarray reporters with protein functions. PMID:17897448
Identification of novel stem cell markers using gap analysis of gene expression data. PMID:17875203
ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation. PMID:17868463
Type I IFN innate immune response to adenovirus-mediated IFN-gamma gene transfer contributes to the regression of cutaneous lymphomas. PMID:17823660
PLD1 is overexpressed in an ER-negative MCF-7 cell line variant and a subset of phospho-Akt-negative breast carcinomas. PMID:17726467
Circulating blood leukocyte gene expression profiles: effects of the Ames dwarf mutation on pathways related to immunity and inflammation. PMID:17611063
Applicability of DNA pools on 500 K SNP microarrays for cost-effective initial screens in genomewide association studies. PMID:17610740
Indexing strategies for rapid searches of short words in genome sequences. PMID:17593978
Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. PMID:17559689
Genome wide copy number abnormalities in pediatric medulloblastomas as assessed by array comparative genome hybridization. PMID:17465989
Global analyses of mRNA translational control during early Drosophila embryogenesis. PMID:17448252
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat. PMID:17448222
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data. PMID:17430561
A role for cell sex in stem cell-mediated skeletal muscle regeneration: female cells have higher muscle regeneration efficiency. PMID:17420291
Gene function in early mouse embryonic stem cell differentiation. PMID:17394647
Chemical knockout of pantothenate kinase reveals the metabolic and genetic program responsible for hepatic coenzyme A homeostasis. PMID:17379144
Review of the literature examining the correlation among DNA microarray technologies. PMID:17370338
Global reconstruction of the human metabolic network based on genomic and bibliomic data. PMID:17267599
Interleukin-18 knockout mice display maladaptive cardiac hypertrophy in response to pressure overload. PMID:17250807
Differential gene expression in CD8(+) cells from HIV-1-infected subjects showing suppression of HIV replication. PMID:17240414
Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips. PMID:17224057
A gene expression signature predicts survival of patients with stage I non-small cell lung cancer. PMID:17194181
Tumor-specific and proliferation-specific gene expression typifies murine transgenic B cell lymphomagenesis. PMID:17166848
Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos. PMID:17142320
Babel's tower revisited: a universal resource for cross-referencing across annotation databases. PMID:17068090
GeneTools--application for functional annotation and statistical hypothesis testing. PMID:17062145
Expoldb: expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats. PMID:17038195
Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data. PMID:17018143
Global transcriptome analysis of genetically identified neurons in the adult cortex. PMID:17005859
Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data. PMID:16817967
Genomic analysis of Xenopus organizer function. PMID:16756679
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations. PMID:16749918
Gene expression profile of human airway epithelium induced by hyperoxia in vivo. PMID:16690988
Segregating variation in the transcriptome: cis regulation and additivity of effects. PMID:16624921
Amplification of the Gene Ontology annotation of Affymetrix probe sets. PMID:16549014
Effects of spironolactone on human blood mononuclear cells: mineralocorticoid receptor independent effects on gene expression and late apoptosis induction. PMID:16520746
Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans. PMID:16478714
Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14. PMID:16451628
Identification of an NF-kappaB-dependent gene network in cells infected by mammalian reovirus. PMID:16414985
Induction of the plasminogen activator inhibitor-2 in cells expressing the ZNF198/FGFR1 fusion kinase that is involved in atypical myeloproliferative disease. PMID:16410451
ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis. PMID:16381943
GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults. PMID:16343346
Analysis of orthologous gene expression between human pulmonary adenocarcinoma and a carcinogen-induced murine model. PMID:16314486
Characterization of transformed Arabidopsis with altered alternative oxidase levels and analysis of effects on reactive oxygen species in tissue. PMID:16299171
Automated methods of predicting the function of biological sequences using GO and BLAST. PMID:16288652
Gene expression profiling of Japanese psoriatic skin reveals an increased activity in molecular stress and immune response signals. PMID:16283139
Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling. PMID:16224098
Genome-wide promoter extraction and analysis in human, mouse, and rat. PMID:16086854
Microarray profiling of isolated abdominal subcutaneous adipocytes from obese vs non-obese Pima Indians: increased expression of inflammation-related genes. PMID:16059715
Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments. PMID:16042764
Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. PMID:16033654
GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists. PMID:15980570
Differential expression of IGF components and insulin receptor isoforms in human seminoma versus normal testicular tissue. PMID:15967097
Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes. PMID:15882471
Functional profiling of human atrial and ventricular gene expression. PMID:15877233
Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate? PMID:15854232
Effector CD8+ T cells recovered from an influenza pneumonia differentiate to a state of focused gene expression. PMID:15831586
Gene and protein expression profiling of the microvascular compartment in experimental autoimmune encephalomyelitis in C57Bl/6 and SJL mice. PMID:15779231
Combining Affymetrix microarray results. PMID:15774008
CoPub Mapper: mining MEDLINE based on search term co-publication. PMID:15760478
Identifying genetic networks underlying myometrial transition to labor. PMID:15693941
Phenotypic anchoring of gene expression changes during estrogen-induced uterine growth. PMID:15598610
Intrahepatic gene expression during chronic hepatitis C virus infection in chimpanzees. PMID:15564486
Combining gene expression data from different generations of oligonucleotide arrays. PMID:15504239
The effect of oxythioquinox exposure on normal human mammary epithelial cell gene expression: a microarray analysis study. PMID:15387888
Alternative mapping of probes to genes for Affymetrix chips. PMID:15310390
The need to decide if all estrogens are intrinsically similar. PMID:15289156
GOAL: automated Gene Ontology analysis of expression profiles. PMID:15215435
GOblet: a platform for Gene Ontology annotation of anonymous sequence data. PMID:15215401
GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining. PMID:15215397
Variations in genome-wide gene expression in identical twins - a study of primary osteoblast-like culture from female twins discordant for osteoporosis. PMID:15176972
Toxicogenomics of subchronic hexachlorobenzene exposure in Brown Norway rats. PMID:15159207
Allelic imbalance analysis by high-density single-nucleotide polymorphic allele (SNP) array with whole genome amplified DNA. PMID:15148342
Global gene expression in human myocardium-oligonucleotide microarray analysis of regional diversity and transcriptional regulation in heart failure. PMID:15103417
Transcriptional signature of an adult brain tumor in Drosophila. PMID:15090076
Regulation of ultraviolet light-induced gene expression by gene size. PMID:15087501
Defining a molecular atlas of the hippocampus using DNA microarrays and high-throughput in situ hybridization. PMID:15084669
Annotation and cross-indexing of array elements on multiple platforms. PMID:15033601
Identification of platform-independent gene expression markers of cisplatin nephrotoxicity. PMID:15033599
A switch in metabolism precedes increased mitochondrial biogenesis in respiratory chain-deficient mouse hearts. PMID:14978272
GermOnline, a cross-species community knowledgebase on germ cell differentiation. PMID:14681481
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. PMID:14681408
Previously unidentified changes in renal cell carcinoma gene expression identified by parametric analysis of microarray data. PMID:14641932
A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets. PMID:14526100
ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis. PMID:12824349
GenePublisher: Automated analysis of DNA microarray data. PMID:12824347
DAVID: Database for Annotation, Visualization, and Integrated Discovery. PMID:12734009
Tags:
Tags
More detailed information about this field from each metasource.
probes and primers
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
sequence sites, features and motifs
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
Tags
More detailed information about this field from each metasource.
probes and primers
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
sequence sites, features and motifs
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
microarray experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
probes and primers sequence sites, features and motifs microarray experiment molecular interactions, pathways and networks gene expression
Need help integrating and/or managing biomedical data?