Arabidopsis Thaliana Trans-factor and cis-Element prediction Database
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Arabidopsis Thaliana Trans-factor and cis-Element prediction Database
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
atted-ii
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
Names
More detailed information about this field from each metasource.
Arabidopsis Thaliana Trans-factor and cis-Element prediction Database
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
atted-ii
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
Other names: ATTED-II, atted-ii
Names
More detailed information about this field from each metasource.
Arabidopsis Thaliana Trans-factor and cis-Element prediction Database
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
atted-ii
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
ATTED-II is a coexpression database for plant species with parallel views of multiple coexpression data sets and network analysis tools. The user can find functional gene relationships and design experiments to identify gene functions by reverse genetics and general molecular biology techniques.
Description
More detailed information about this field from each metasource.
ATTED-II is a coexpression database for plant species with parallel views of multiple coexpression data sets and network analysis tools. The user can find functional gene relationships and design experiments to identify gene functions by reverse genetics and general molecular biology techniques.
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publicly available database of co-expressed gene sets would be a valuable tool for a wide variety of experimental designs, including targeting of genes for functional identification or for regulatory investigation. Here, we report the construction of an Arabidopsis thaliana trans-factor and cis-element prediction database (ATTED-II) that provides co-regulated gene relationships based on co-expressed genes deduced from microarray data and the predicted cis elements. ATTED-II includes the following features: (i) lists and networks of co-expressed genes calculated from 58 publicly available experimental series, which are composed of 1388 GeneChip data in A. thaliana, (ii) prediction of cis regulatory elements in the 200-bp region upstream of the transcription start site to predict co-regulated genes amongst the co-expressed genes, and (iii) visual representation of expression patterns for individual genes. ATTED-II can thus help researchers to clarify the function and regulation of particular genes and gene networks.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ATTED-II is a gene coexpression database for nine plant species based on publicly available RNAseq and microarray data.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
Webpage:
http://atted.jpWebpage
More detailed information about this field from each metasource.
http://atted.jp
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://atted.jp/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
https://atted.jp
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
Licence:
Name: CC-BY-SA-2.0Licence name
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Publications:
Publications
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ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
PMID: 17130150
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression
PMID: 26546318
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants
PMID: 24334350
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components
PMID: 35353884
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
Publications
More detailed information about this field from each metasource.
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
PMID: 17130150
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression
PMID: 26546318
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants
PMID: 24334350
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components
PMID: 35353884
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
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ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
PubMed citations: 168.
168 articles citing: ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
Gene Co-expression Network Analysis and Linking Modules to Phenotyping Response in Plants. PMID:35895209
The Arabidopsis gene co-expression network. PMID:35492683
Physiological roles of Casparian strips and suberin in the transport of water and solutes. PMID:34617285
Vision, challenges and opportunities for a Plant Cell Atlas. PMID:34491200
Metabolism and Regulatory Functions of O-Acetylserine, S-Adenosylmethionine, Homocysteine, and Serine in Plant Development and Environmental Responses. PMID:34025692
Co-Regulation of Clustered and Neo-Functionalized Genes in Plant-Specialized Metabolism. PMID:32414181
Prefoldins contribute to maintaining the levels of the spliceosome LSM2-8 complex through Hsp90 in Arabidopsis. PMID:32396196
The sugar transporter SWEET10 acts downstream of FLOWERING LOCUS T during floral transition of Arabidopsis thaliana. PMID:32013867
Analysis of differentially expressed genes in bacterial and fungal keratitis. PMID:31856463
Vegetative desiccation tolerance in the resurrection plant Xerophyta humilis has not evolved through reactivation of the seed canonical LAFL regulatory network. PMID:31680354
Suppression of abscisic acid biosynthesis at the early infection stage of Verticillium longisporum in oilseed rape (Brassica napus). PMID:31603283
SOBIR1/EVR prevents precocious initiation of fiber differentiation during wood development through a mechanism involving BP and ERECTA. PMID:31444299
Transcriptome Analysis and Identification of a Transcriptional Regulatory Network in the Response to H2O2. PMID:31064811
PRX9 and PRX40 Are Extensin Peroxidases Essential for Maintaining Tapetum and Microspore Cell Wall Integrity during Arabidopsis Anther Development. PMID:30886127
Overexpression of a Brix Domain-Containing Ribosome Biogenesis Factor ARPF2 and its Interactor ARRS1 Causes Morphological Changes and Lifespan Extension in Arabidopsis thaliana. PMID:30210511
RNA-Seq analysis of differential gene expression in Betula luminifera xylem during the early stages of tension wood formation. PMID:30155351
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data. PMID:29490019
Heat-shock protein 40 is the key farnesylation target in meristem size control, abscisic acid signaling, and drought resistance. PMID:29269486
Reduced Expression of APUM24, Encoding a Novel rRNA Processing Factor, Induces Sugar-Dependent Nucleolar Stress and Altered Sugar Responses in Arabidopsis thaliana. PMID:29242314
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index. PMID:29216398
The Arabidopsis Cysteine-Rich Receptor-Like Kinase CRK36 Regulates Immunity through Interaction with the Cytoplasmic Kinase BIK1. PMID:29163585
The DEAD-box RNA Helicase RH50 Is a 23S-4.5S rRNA Maturation Factor that Functionally Overlaps with the Plastid Signaling Factor GUN1. PMID:29138350
Identification of biomarkers for childhood obesity based on expressional correlation and functional similarity. PMID:29115457
Arabidopsis Novel Glycine-Rich Plasma Membrane PSS1 Protein Enhances Disease Resistance in Transgenic Soybean Plants. PMID:29101280
Identification of potential key genes associated with glioblastoma based on the gene expression profile. PMID:28789435
Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response. PMID:28764653
A Conserved Carbon Starvation Response Underlies Bud Dormancy in Woody and Herbaceous Species. PMID:28588590
Arabidopsis Regenerating Protoplast: A Powerful Model System for Combining the Proteomics of Cell Wall Proteins and the Visualization of Cell Wall Dynamics. PMID:28248244
Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana. PMID:28175342
Suppressor of Overexpression of CO 1 Negatively Regulates Dark-Induced Leaf Degreening and Senescence by Directly Repressing Pheophytinase and Other Senescence-Associated Genes in Arabidopsis. PMID:28096189
Transcriptional Regulation of Tetrapyrrole Biosynthesis in Arabidopsis thaliana. PMID:27990150
Genome-wide characterisation and expression profile of the grapevine ATL ubiquitin ligase family reveal biotic and abiotic stress-responsive and development-related members. PMID:27910910
Vacuolar Chloride Fluxes Impact Ion Content and Distribution during Early Salinity Stress. PMID:27503602
Bioinformatics Approach in Plant Genomic Research. PMID:27499685
Recent Advances in Understanding the Molecular Mechanisms Regulating the Root System Response to Phosphate Deficiency in Arabidopsis. PMID:27499680
Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data. PMID:27363486
Learning from Co-expression Networks: Possibilities and Challenges. PMID:27092161
Cellulose Deficiency Is Enhanced on Hyper Accumulation of Sucrose by a H+-Coupled Sucrose Symporter. PMID:27013021
Comprehensive Genomic Analysis and Expression Profiling of the NOX Gene Families under Abiotic Stresses and Hormones in Plants. PMID:26907500
MIrExpress: A Database for Gene Coexpression Correlation in Immune Cells Based on Mutual Information and Pearson Correlation. PMID:26881263
The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics. PMID:26866607
GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis. PMID:26823545
CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool. PMID:26779228
Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6. PMID:26717955
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression. PMID:26546318
Construction and validation of a gene co-expression network in grapevine (Vitis vinifera. L.). PMID:26504546
Transcriptional profiles of Arabidopsis stomataless mutants reveal developmental and physiological features of life in the absence of stomata. PMID:26157447
Self-similarity of human protein interaction networks: a novel strategy of distinguishing proteins. PMID:25720740
Transcriptome and metabolome analysis of plant sulfate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulfur, nitrogen and phosphorus nutritional responses in Arabidopsis. PMID:25674096
COBRA-LIKE2, a member of the glycosylphosphatidylinositol-anchored COBRA-LIKE family, plays a role in cellulose deposition in arabidopsis seed coat mucilage secretory cells. PMID:25583925
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. PMID:25549671
SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. PMID:25425661
GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. PMID:25392409
In silico analysis of high affinity potassium transporter (HKT) isoforms in different plants. PMID:25279141
The AT-hook motif-encoding gene METABOLIC NETWORK MODULATOR 1 underlies natural variation in Arabidopsis primary metabolism. PMID:25202318
Construction and analysis of microRNA-transcription factor regulation network in Arabidopsis. PMID:25014374
Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences. PMID:24980080
Responses of a triple mutant defective in three iron deficiency-induced Basic Helix-Loop-Helix genes of the subgroup Ib(2) to iron deficiency and salicylic acid. PMID:24919188
Identification of Novel Peptidyl Serine α-Galactosyltransferase Gene Family in Plants. PMID:24914209
Arabidopsis thaliana glyoxalase 2-1 is required during abiotic stress but is not essential under normal plant growth. PMID:24760003
A three step network based approach (TSNBA) to finding disease molecular signature and key regulators: a case study of IL-1 and TNF-alpha stimulated inflammation. PMID:24747419
SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways. PMID:24712981
Linking gene expression and membrane lipid composition of Arabidopsis. PMID:24642935
Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana. PMID:24555803
Identification of gene functions associated to active and dormant buds in Arabidopsis. PMID:24518068
Physiological and genetic analysis of CO2-induced breakdown of self-incompatibility in Brassica rapa. PMID:24376255
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. PMID:24334350
Identification of immunity-related genes in Arabidopsis and cassava using genomic data. PMID:24316329
The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. PMID:24096342
Precise sequential DNA ligation on a solid substrate: solid-based rapid sequential ligation of multiple DNA molecules. PMID:23897972
Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PMID:23861834
Arabidopsis CURVATURE THYLAKOID1 proteins modify thylakoid architecture by inducing membrane curvature. PMID:23839788
The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway. PMID:23815750
PromoterCAD: Data-driven design of plant regulatory DNA. PMID:23766287
BRANCHED1 promotes axillary bud dormancy in response to shade in Arabidopsis. PMID:23524661
Specialized roles of the conserved subunit OST3/6 of the oligosaccharyltransferase complex in innate immunity and tolerance to abiotic stresses. PMID:23493405
Genetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thaliana. PMID:23335938
UniVIO: a multiple omics database with hormonome and transcriptome data from rice. PMID:23314752
Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era. PMID:23281970
The novel plant protein INAPERTURATE POLLEN1 marks distinct cellular domains and controls formation of apertures in the Arabidopsis pollen exine. PMID:23136373
Comparative genomic analysis of NAC transcriptional factors to dissect the regulatory mechanisms for cell wall biosynthesis. PMID:23046216
Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage. PMID:23043051
Exploring the shallow end; estimating information content in transcriptomics studies. PMID:22973290
Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. PMID:22923678
The Arabidopsis DELLA RGA-LIKE3 is a direct target of MYC2 and modulates jasmonate signaling responses. PMID:22892320
A specific variant of the PHR1 binding site is highly enriched in the Arabidopsis phosphate-responsive phospholipase DZ2 coexpression network. PMID:22836502
Role of the G-box element in regulation of chlorophyll biosynthesis in Arabidopsis roots. PMID:22827944
'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana. PMID:22800758
A transcriptional dynamic network during Arabidopsis thaliana pollen development. PMID:22784627
Annotation of plant gene function via combined genomics, metabolomics and informatics. PMID:22733029
Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically. PMID:22718775
Tackling drought stress: receptor-like kinases present new approaches. PMID:22693282
Demethylesterification of the primary wall by PECTIN METHYLESTERASE35 provides mechanical support to the Arabidopsis stem. PMID:22693281
Human gene correlation analysis (HGCA): a tool for the identification of transcriptionally co-expressed genes. PMID:22672625
Plasmodesmata "in Communicado". PMID:22645579
Genetic evidence for the reduction of brassinosteroid levels by a BAHD acyltransferase-like protein in Arabidopsis. PMID:22544867
ANAP: an integrated knowledge base for Arabidopsis protein interaction network analysis. PMID:22345505
A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. PMID:22302148
Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq. PMID:22244270
Occurrence of calreticulin during the exchange of nucleohistones into protamine-type proteins in Chara vulgaris spermiogenesis. PMID:22198493
Transcriptional and metabolic programs following exposure of plants to UV-B irradiation. PMID:22112450
Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays. PMID:22046259
Establishment of an in planta magnesium monitoring system using CAX3 promoter-luciferase in Arabidopsis. PMID:21914662
Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana. PMID:21857804
Gene coexpression network analysis as a source of functional annotation for rice genes. PMID:21799793
Detection and interpretation of metabolite-transcript coresponses using combined profiling data. PMID:21685093
Gene network landscape of the ciliate Tetrahymena thermophila. PMID:21637855
Mutations in retrotransposon AtCOPIA4 compromises resistance to Hyaloperonospora parasitica in Arabidopsis thaliana. PMID:21637617
Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis. PMID:21635767
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. PMID:21612636
Prospecting for genes involved in transcriptional regulation of plant defenses, a bioinformatics approach. PMID:21595873
Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana. PMID:21592396
Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. PMID:21441235
Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis. PMID:21343415
Modulation of sulfur metabolism enables efficient glucosinolate engineering. PMID:21281472
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. PMID:21217125
OryzaExpress: an integrated database of gene expression networks and omics annotations in rice. PMID:21186175
AthaMap-assisted transcription factor target gene identification in Arabidopsis thaliana. PMID:21177332
Callose synthase GSL7 is necessary for normal phloem transport and inflorescence growth in Arabidopsis. PMID:21098675
PAMP (pathogen-associated molecular pattern)-induced changes in plasma membrane compartmentalization reveal novel components of plant immunity. PMID:20843791
LAP5 and LAP6 encode anther-specific proteins with similarity to chalcone synthase essential for pollen exine development in Arabidopsis. PMID:20442277
Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways. PMID:20383554
Genomics and bioinformatics resources for crop improvement. PMID:20208064
Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana. PMID:20205940
CORNET: a user-friendly tool for data mining and integration. PMID:20053712
In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana. PMID:20025756
AtMetExpress development: a phytochemical atlas of Arabidopsis development. PMID:20023150
'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it. PMID:20001958
Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. PMID:19933203
Bioinformatic and systems biology tools to generate testable models of signaling pathways and their targets. PMID:19915012
The ER body, a new organelle in Arabidopsis thaliana, requires NAI2 for its formation and accumulates specific beta-glucosidases. PMID:19847124
Arabidopsis gene co-expression network and its functional modules. PMID:19845953
Function of Arabidopsis hexokinase-like1 as a negative regulator of plant growth. PMID:19706780
CYP704B1 is a long-chain fatty acid omega-hydroxylase essential for sporopollenin synthesis in pollen of Arabidopsis. PMID:19700560
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. PMID:19620096
A plant-specific calreticulin is a key retention factor for a defective brassinosteroid receptor in the endoplasmic reticulum. PMID:19597144
Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010. PMID:19596708
R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae. PMID:19592510
BOBBER1 is a noncanonical Arabidopsis small heat shock protein required for both development and thermotolerance. PMID:19571304
Internet Resources for Gene Expression Analysis in Arabidopsis thaliana. PMID:19506727
Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase. PMID:19493961
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. PMID:19357200
Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana. PMID:19309492
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. PMID:19286968
A systems approach reveals regulatory circuitry for Arabidopsis trichome initiation by the GL3 and GL1 selectors. PMID:19247443
Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. PMID:19054808
Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins. PMID:19043666
KAGIANA: an excel-based tool for retrieving summary information on Arabidopsis genes. PMID:19043069
PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups. PMID:19036138
ATTED-II provides coexpressed gene networks for Arabidopsis. PMID:18953027
SVD-based anatomy of gene expressions for correlation analysis in Arabidopsis thaliana. PMID:18931094
NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis. PMID:18849494
AthaMap, integrating transcriptional and post-transcriptional data. PMID:18842622
Regulon organization of Arabidopsis. PMID:18826618
NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana. PMID:18780803
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. PMID:18757557
The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1. PMID:18528439
GeneCAT--novel webtools that combine BLAST and co-expression analyses. PMID:18480120
CressExpress: a tool for large-scale mining of expression data from Arabidopsis. PMID:18467456
Functional analysis of a predicted flavonol synthase gene family in Arabidopsis. PMID:18467451
Analysis of the Arabidopsis histidine kinase ATHK1 reveals a connection between vegetative osmotic stress sensing and seed maturation. PMID:18441212
Recent overview of the Mg branch of the tetrapyrrole biosynthesis leading to chlorophylls. PMID:18273690
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. PMID:18028551
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. PMID:18021423
COXPRESdb: a database of coexpressed gene networks in mammals. PMID:17932064
An Arabidopsis gene network based on the graphical Gaussian model. PMID:17921353
Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the chloroplast thylakoid lumen of Arabidopsis. PMID:17827269
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. PMID:17420480 -
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression
PubMed citations: 72.
72 articles citing: ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression
Research Advances and Prospects of Orphan Genes in Plants. PMID:35874010
Identification of Potential Genes Encoding Protein Transporters in Arabidopsis thaliana Glucosinolate (GSL) Metabolism. PMID:35330077
PlantNexus: A Gene Co-expression Network Database and Visualization Tool for Barley and Sorghum. PMID:35024864
Silencing of StRIK in potato suggests a role in periderm related to RNA processing and stress. PMID:34493224
Potential Arabidopsis thaliana glucosinolate genes identified from the co-expression modules using graph clustering approach. PMID:34430080
The evolutionary conserved iron-sulfur protein TCR controls P700 oxidation in photosystem I. PMID:33554065
Using Gene Expression to Study Specialized Metabolism-A Practical Guide. PMID:33510763
HpeNet: Co-expression Network Database for de novo Transcriptome Assembly of Paeonia lactiflora Pall. PMID:33193666
Auxin apical dominance governed by the OsAsp1-OsTIF1 complex determines distinctive rice caryopses development on different branches. PMID:33108367
CLE2 regulates light-dependent carbohydrate metabolism in Arabidopsis shoots. PMID:32980951
Coexpression Analysis Reveals Dynamic Modules Regulating the Growth and Development of Cirri in the Rattans (Calamus simplicifolius and Daemonorops jenkinsiana). PMID:32477399
MyoMiner: explore gene co-expression in normal and pathological muscle. PMID:32393257
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis. PMID:31681374
Gene networks underlying the early regulation of Paraburkholderia phytofirmans PsJN induced systemic resistance in Arabidopsis. PMID:31437216
The Nutrient Response Transcriptional Regulome of Arabidopsis. PMID:31415997
PAWH1 and PAWH2 are plant-specific components of an Arabidopsis endoplasmic reticulum-associated degradation complex. PMID:31375683
Different Roles of Heat Shock Proteins (70 kDa) During Abiotic Stresses in Barley (Hordeum vulgare) Genotypes. PMID:31357401
Molecular Evolution and Functional Analysis of Rubredoxin-Like Proteins in Plants. PMID:31355252
Genome-wide binding analysis of AtGNC and AtCGA1 demonstrates their cross-regulation and common and specific functions. PMID:31245665
Computational identification of protein-protein interactions in model plant proteomes. PMID:31217453
A Label-free Mass Spectrometry Method to Predict Endogenous Protein Complex Composition. PMID:31186290
Arabidopsis mlo3 mutant plants exhibit spontaneous callose deposition and signs of early leaf senescence. PMID:31049793
croFGD: Catharanthus roseus Functional Genomics Database. PMID:30967897
SuCComBase: a manually curated repository of plant sulfur-containing compounds. PMID:30793170
Gene co-expression network analysis identifies trait-related modules in Arabidopsis thaliana. PMID:30701323
TAT1 and TAT2 tyrosine aminotransferases have both distinct and shared functions in tyrosine metabolism and degradation in Arabidopsis thaliana. PMID:30630953
PlantEAR: Functional Analysis Platform for Plant EAR Motif-Containing Proteins. PMID:30555515
Co-expression Gene Network Analysis and Functional Module Identification in Bamboo Growth and Development. PMID:30542370
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. PMID:30462320
Identification of O-acetylserine(thiol)lyase (OASTL) genes in sorghum (Sorghum bicolor) and gene expression analysis under cadmium stress. PMID:30443823
Developmental Plasticity of the Major Alkyl Cannabinoid Chemotypes in a Diverse Cannabis Genetic Resource Collection. PMID:30405660
Transcriptome Analysis of Four Arabidopsis thaliana Mediator Tail Mutants Reveals Overlapping and Unique Functions in Gene Regulation. PMID:30049745
Network analysis of ABA-dependent and ABA-independent drought responsive genes in Arabidopsis thaliana. PMID:30044467
ONE-HELIX PROTEIN2 (OHP2) Is Required for the Stability of OHP1 and Assembly Factor HCF244 and Is Functionally Linked to PSII Biogenesis. PMID:29930106
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features. PMID:29927082
MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants. PMID:29875778
CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses. PMID:29718322
MYB30 links ROS signaling, root cell elongation, and plant immune responses. PMID:29712840
Evidence that the metabolite repair enzyme NAD(P)HX epimerase has a moonlighting function. PMID:29654173
MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants. PMID:29616063
Plant Glycine-Rich Proteins in Stress Response: An Emerging, Still Prospective Story. PMID:29568308
Construction of Pará rubber tree genome and multi-transcriptome database accelerates rubber researches. PMID:29363422
Redox regulation of PEP activity during seedling establishment in Arabidopsis thaliana. PMID:29298981
Heat-shock protein 40 is the key farnesylation target in meristem size control, abscisic acid signaling, and drought resistance. PMID:29269486
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index. PMID:29216398
Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. PMID:29066669
The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis. PMID:28947489
Nitrate Uptake Affects Cell Wall Synthesis and Modeling. PMID:28848580
Enhancement of cell wall protein SRPP expression during emergent root hair development in Arabidopsis. PMID:28837399
Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data. PMID:28768814
Suppressors of the Chloroplast Protein Import Mutant tic40 Reveal a Genetic Link between Protein Import and Thylakoid Biogenesis. PMID:28684427
Genetic dissection of the Arabidopsis spaceflight transcriptome: Are some responses dispensable for the physiological adaptation of plants to spaceflight? PMID:28662188
Peroxiredoxins and Redox Signaling in Plants. PMID:28594234
Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene. PMID:28583129
Reduction of indole-3-acetic acid methyltransferase activity compensates for high-temperature male sterility in Arabidopsis. PMID:28574629
PSA3, a Protein on the Stromal Face of the Thylakoid Membrane, Promotes Photosystem I Accumulation in Cooperation with the Assembly Factor PYG7. PMID:28522455
A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants. PMID:28408660
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants. PMID:28228535
NorWood: a gene expression resource for evo-devo studies of conifer wood development. PMID:28186632
Genome-wide analysis of cis-regulatory element structure and discovery of motif-driven gene co-expression networks in grapevine. PMID:28119334
Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes. PMID:28069893
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium. PMID:28053168
A Meta-Analysis Based Method for Prioritizing Candidate Genes Involved in a Pre-specific Function. PMID:28018423
Transcriptional Regulation of Tetrapyrrole Biosynthesis in Arabidopsis thaliana. PMID:27990150
SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations. PMID:27899614
Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly. PMID:27733515
Differential Gene Expression and Protein Phosphorylation as Factors Regulating the State of the Arabidopsis SNX1 Protein Complexes in Response to Environmental Stimuli. PMID:27725825
The photomorphogenic factors UV-B RECEPTOR 1, ELONGATED HYPOCOTYL 5, and HY5 HOMOLOGUE are part of the UV-B signalling pathway in grapevine and mediate flavonol accumulation in response to the environment. PMID:27543604
CB5C affects the glucosinolate profile in Arabidopsis thaliana. PMID:27454255
The AtGRXS3/4/5/7/8 glutaredoxin gene cluster on Arabidopsis thaliana chromosome 4 is coordinately regulated by nitrate and appears to control primary root growth. PMID:27049601
HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks. PMID:26657893 -
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants
PubMed citations: 52.
52 articles citing: ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants
PlantNexus: A Gene Co-expression Network Database and Visualization Tool for Barley and Sorghum. PMID:35024864
Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture. PMID:34357701
Cellular export of sugars and amino acids: role in feeding other cells and organisms. PMID:34015139
Araport Lives: An Updated Framework for Arabidopsis Bioinformatics. PMID:32699173
Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling. PMID:32547596
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis. PMID:31681374
Gene networks underlying the early regulation of Paraburkholderia phytofirmans PsJN induced systemic resistance in Arabidopsis. PMID:31437216
A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation. PMID:30705745
Pan- and core- gene association networks: Integrative approaches to understanding biological regulation. PMID:30625202
Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize. PMID:30413654
REBELOTE, a regulator of floral determinacy in Arabidopsis thaliana, interacts with both nucleolar and nucleoplasmic proteins. PMID:30338215
Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage. PMID:30228108
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index. PMID:29216398
Ethylene Receptors Signal via a Noncanonical Pathway to Regulate Abscisic Acid Responses. PMID:29158332
SIEVE ELEMENT-LINING CHAPERONE1 Restricts Aphid Feeding on Arabidopsis during Heat Stress. PMID:28970334
The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis. PMID:28947489
A Proteomic View on the Role of Legume Symbiotic Interactions. PMID:28769967
RapaNet: A Web Tool for the Co-Expression Analysis of Brassica rapa Genes. PMID:28680265
Light Controls Cytokinin Signaling via Transcriptional Regulation of Constitutively Active Sensor Histidine Kinase CKI1. PMID:28292856
DNApod: DNA polymorphism annotation database from next-generation sequence read archives. PMID:28234924
Small One-Helix Proteins Are Essential for Photosynthesis in Arabidopsis. PMID:28167950
Skewing in Arabidopsis roots involves disparate environmental signaling pathways. PMID:28143395
A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation. PMID:27407139
Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. PMID:27253878
Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance. PMID:27215785
Transcriptional regulation of receptor-like protein genes by environmental stresses and hormones and their overexpression activities in Arabidopsis thaliana. PMID:27099374
Learning from Co-expression Networks: Possibilities and Challenges. PMID:27092161
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system. PMID:27078110
Bioinformatic landscapes for plant transcription factor system research. PMID:26719053
HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks. PMID:26657893
ALCOdb: Gene Coexpression Database for Microalgae. PMID:26644461
ALA10, a Phospholipid Flippase, Controls FAD2/FAD3 Desaturation of Phosphatidylcholine in the ER and Affects Chloroplast Lipid Composition in Arabidopsis thaliana. PMID:26620528
Transcriptome analysis reveals regulatory networks underlying differential susceptibility to Botrytis cinerea in response to nitrogen availability in Solanum lycopersicum. PMID:26583019
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression. PMID:26546318
Crop improvement using life cycle datasets acquired under field conditions. PMID:26442053
"PP2C7s", Genes Most Highly Elaborated in Photosynthetic Organisms, Reveal the Bacterial Origin and Stepwise Evolution of PPM/PP2C Protein Phosphatases. PMID:26241330
MUCILAGE-RELATED10 Produces Galactoglucomannan That Maintains Pectin and Cellulose Architecture in Arabidopsis Seed Mucilage. PMID:26220953
The conserved transcription factors, MYB115 and MYB118, control expression of the newly evolved benzoyloxy glucosinolate pathway in Arabidopsis thaliana. PMID:26029237
New insights into the evolutionary history of plant sorbitol dehydrogenase. PMID:25879735
Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis. PMID:25566309
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. PMID:25531128
Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation. PMID:25505034
MOROKOSHI: transcriptome database in Sorghum bicolor. PMID:25505007
Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes. PMID:25435546
Triticeae resources in Ensembl Plants. PMID:25432969
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. PMID:25392420
ImmuCo: a database of gene co-expression in immune cells. PMID:25326331
ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis. PMID:25217507
Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. PMID:25118255
Systems biology in the context of big data and networks. PMID:24982882
Glycosylinositol phosphorylceramides from Rosa cell cultures are boron-bridged in the plasma membrane and form complexes with rhamnogalacturonan II. PMID:24804932
The Biosynthetic Pathway of Indole-3-Carbaldehyde and Indole-3-Carboxylic Acid Derivatives in Arabidopsis. PMID:24728709 -
ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components
PubMed citations: 1.
1 articles citing: ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components
Dual Mechanisms of Coniferyl Alcohol in Phenylpropanoid Pathway Regulation. PMID:35599874
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gene
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
rna sequence
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
regulation of gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
arabidopsis thaliana
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
physiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:03.451537
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gene
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
rna sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
regulation of gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: ATTED-II; Arabidopsis Thaliana Trans-factor and cis-Element prediction Database; DOI: https://doi.org/10.25504/FAIRsharing.tby3x7; Last edited: April 26, 2021, 8:25 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
arabidopsis thaliana
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
microarray experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
transcriptomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
physiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
rna-seq
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:03.451537
gene gene expression rna sequence regulation of gene expression plant plant biology microarray experiment transcriptomics physiology rna sequence
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