Tissue Microarray Ontology
Names
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Tissue Microarray Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/TMA
TMA
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/TMA
Names
More detailed information about this field from each metasource.
Tissue Microarray Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/TMA
TMA
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/TMA
Names
More detailed information about this field from each metasource.
Tissue Microarray Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/TMA
TMA
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/TMA
Tissue microarrays (TMA) are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential.
Description
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Tissue microarrays (TMA) are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential.
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tissue microarrays (TMA) are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential. The Resource Description Framework (RDF) provides a flexible method to represent knowledge in triples, which take the form Subject-Predicate-Object. All data resources are described using Uniform Resource Identifiers (URI), which are global in scope. We present an OWL (Web Ontology Language) schema that expands upon the TMA data exchange specification to address this issue and assist in data sharing and integration.
metasource: Biontology / Bioportalversion: 1.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/TMA
Webpage:
http://bioportal.bioontology.org/ontologies/1494Webpage
More detailed information about this field from each metasource.
http://bioportal.bioontology.org/ontologies/1494
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Ontology-based, Tissue MicroArray oriented, image centered tissue bank
PMID: 18460177
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tissue MicroArray: a distributed Grid approach for image analysis
PMID: 17476071
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Ontology-based, Tissue MicroArray oriented, image centered tissue bank
PMID: 18460177
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tissue MicroArray: a distributed Grid approach for image analysis
PMID: 17476071
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Ontology-based, Tissue MicroArray oriented, image centered tissue bank
PubMed citations: 6.
6 articles citing: Ontology-based, Tissue MicroArray oriented, image centered tissue bank
Advantages of using graph databases to explore chromatin conformation capture experiments. PMID:33902433
Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives. PMID:25254202
A metadata-aware application for remote scoring and exchange of tissue microarray images. PMID:23635078
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. PMID:21606133
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study. PMID:21087464
A Semantic Web for bioinformatics: goals, tools, systems, applications. PMID:18460170 -
Tissue MicroArray: a distributed Grid approach for image analysis
PubMed citations: 2.
2 articles citing: Tissue MicroArray: a distributed Grid approach for image analysis
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. PMID:21606133
Ultra-fast processing of gigapixel Tissue MicroArray images using high performance computing. PMID:21559926
Tags:
Tags
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cellular localization
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
histology
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
microarray experiment
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
tissue
metasource: Fairsharing.org
version: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
cellular localization
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
histology
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
microarray experiment
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
tissue
metasource: Fairsharing.orgversion: FAIRsharing.org: TMA; Tissue Microarray Ontology; DOI: https://doi.org/10.25504/FAIRsharing.jkj6ah; Last edited: Aug. 16, 2019, 2:50 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
cellular localization gene expression histology microarray experiment tissue
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