CIBEX
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Public repository for gene expression experimental data. The database system is compliant with the MIAME standard.
Description
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Public repository for gene expression experimental data. The database system is compliant with the MIAME standard.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.869248
Webpage:
http://cibex.nig.ac.jp/Webpage
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Publications:
Publications
More detailed information about this field from each metasource.
CIBEX: center for information biology gene expression database
PMID: 14744116
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
Submission of microarray data to public repositories
PMID: 15340489
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
Publications
More detailed information about this field from each metasource.
CIBEX: center for information biology gene expression database
PMID: 14744116
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
Submission of microarray data to public repositories
PMID: 15340489
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
-
CIBEX: center for information biology gene expression database
PubMed citations: 64.
64 articles citing: CIBEX: center for information biology gene expression database
Impact of Maternal Obesity on Liver Disease in the Offspring: A Comprehensive Transcriptomic Analysis and Confirmation of Results in a Murine Model. PMID:35203502
Understanding the Molecular Mechanisms of Asthma through Transcriptomics. PMID:32141255
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data. PMID:30357349
Lhx1/5 control dendritogenesis and spine morphogenesis of Purkinje cells via regulation of Espin. PMID:28516904
Gateways to the FANTOM5 promoter level mammalian expression atlas. PMID:25723102
The Rice Oligonucleotide Array Database: an atlas of rice gene expression. PMID:24279809
Standardization of sample collection, isolation and analysis methods in extracellular vesicle research. PMID:24009894
Data submission and quality in microarray-based microRNA profiling. PMID:23358751
miRNA profiles of monocyte-lineage cells are consistent with complicated roles in HIV-1 restriction. PMID:23202444
RiceFREND: a platform for retrieving coexpressed gene networks in rice. PMID:23180784
RiceXPro version 3.0: expanding the informatics resource for rice transcriptome. PMID:23180765
MGEx-Udb: a mammalian uterus database for expression-based cataloguing of genes across conditions, including endometriosis and cervical cancer. PMID:22606288
How can microarrays unlock asthma? PMID:22500180
Remodeling lipid metabolism and improving insulin responsiveness in human primary myotubes. PMID:21760887
Systems glycobiology: biochemical reaction networks regulating glycan structure and function. PMID:21436236
Conceptual aspects of large meta-analyses with publicly available microarray data: a case study in oncology. PMID:21423405
OryzaExpress: an integrated database of gene expression networks and omics annotations in rice. PMID:21186175
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle. PMID:21149299
DDBJ progress report. PMID:21062814
Assessing the quality of annotations in asthma gene expression experiments. PMID:21044366
Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization. PMID:20727159
A novel tissue-specific meta-analysis approach for gene expression predictions, initiated with a mammalian gene expression testis database. PMID:20699007
Expectations, validity, and reality in gene expression profiling. PMID:20579843
DSGeo: software tools for cross-platform analysis of gene expression data in GEO. PMID:20435161
DDBJ launches a new archive database with analytical tools for next-generation sequence data. PMID:19850725
BASE--2nd generation software for microarray data management and analysis. PMID:19822003
Towards large-scale sample annotation in gene expression repositories. PMID:19761579
Evaluation of a large-scale biomedical data annotation initiative. PMID:19761564
MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines. PMID:19688090
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. PMID:19620096
Bioinformatics resources for cancer research with an emphasis on gene function and structure prediction tools. PMID:19458756
MIMAS 3.0 is a Multiomics Information Management and Annotation System. PMID:19450266
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions. PMID:19374773
Gene-L'EXPO: a tool to extract knowledge From transcriptomes and find 'Literature-Sparse' relationships between genes and tissues. PMID:18999036
Key issues in conducting a meta-analysis of gene expression microarray datasets. PMID:18767902
Standardization Initiatives in the (eco)toxicogenomics domain: a review. PMID:18629184
Navigating public microarray databases. PMID:18629145
A software framework for microarray and gene expression object model (MAGE-OM) array design annotation. PMID:18366695
CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform. PMID:17940091
COXPRESdb: a database of coexpressed gene networks in mammals. PMID:17932064
Challenges and standards in integrating surveys of structural variation. PMID:17597783
PrestOMIC, an open source application for dissemination of proteomic datasets by individual laboratories. PMID:17553161
The genopolis microarray database. PMID:17430566
Graph-based identification of cancer signaling pathways from published gene expression signatures using PubLiME. PMID:17389643
Sharing detailed research data is associated with increased citation rate. PMID:17375194
ArrayExpress--a public database of microarray experiments and gene expression profiles. PMID:17132828
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. PMID:17130150
MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies. PMID:16987406
Expression profiling of the mouse early embryo: reflections and perspectives. PMID:16739220
Early days: genomics and human responses to infection. PMID:16679048
MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation. PMID:16597336
Meeting report: Validation of toxicogenomics-based test systems: ECVAM-ICCVAM/NICEATM considerations for regulatory use. PMID:16507466
Recent applications of DNA microarray technology to toxicology and ecotoxicology. PMID:16393650
DDBJ in preparation for overview of research activities behind data submissions. PMID:16381940
GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults. PMID:16343346
Analysis of microarray studies performed in the neurosciences. PMID:16280595
MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data. PMID:16280078
L2L: a simple tool for discovering the hidden significance in microarray expression data. PMID:16168088
Storing, linking, and mining microarray databases using SRS. PMID:16048644
ArrayExpress--a public repository for microarray gene expression data at the EBI. PMID:15608260
The European Bioinformatics Institute's data resources: towards systems biology. PMID:15608238
Standards for microarray data: an open letter. PMID:15345376
Submission of microarray data to public repositories. PMID:15340489
DDBJ in the stream of various biological data. PMID:14681352 -
Submission of microarray data to public repositories
PubMed citations: 37.
37 articles citing: Submission of microarray data to public repositories
Responsible, practical genomic data sharing that accelerates research. PMID:32694666
Common Gene Expression Patterns in Environmental Model Organisms Exposed to Engineered Nanomaterials: A Meta-Analysis. PMID:31752483
Predictability of human differential gene expression. PMID:30846554
How Many Lymph Nodes Are Enough? Assessing the Adequacy of Lymph Node Yield for Papillary Thyroid Cancer. PMID:27528716
From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach. PMID:26562430
Databases for Microbiologists. PMID:26013493
The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungus Paxillus involutus. PMID:23902518
Using genome-wide expression profiling to define gene networks relevant to the study of complex traits: from RNA integrity to network topology. PMID:23195313
How can microarrays unlock asthma? PMID:22500180
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. PMID:21969471
The need for the pathology community to sponsor a whole slide imaging repository with technical guidance from the pathology informatics community. PMID:21845229
Who shares? Who doesn't? Factors associated with openly archiving raw research data. PMID:21765886
Using DNA microarrays to assay part function. PMID:21601083
Conceptual aspects of large meta-analyses with publicly available microarray data: a case study in oncology. PMID:21423405
Public sharing of research datasets: a pilot study of associations. PMID:21339841
The role of gene expression in ecological speciation. PMID:20860685
The filamentous fungal gene expression database (FFGED). PMID:20025988
A novel information retrieval model for high-throughput molecular medicine modalities. PMID:19458790
Repeatability of published microarray gene expression analyses. PMID:19174838
Key issues in conducting a meta-analysis of gene expression microarray datasets. PMID:18767902
MIFlowCyt: the minimum information about a Flow Cytometry Experiment. PMID:18752282
Navigating public microarray databases. PMID:18629145
Discovery of agents that eradicate leukemia stem cells using an in silico screen of public gene expression data. PMID:18305216
Genetic and molecular epidemiology. PMID:17699527
ArrayExpress--a public database of microarray experiments and gene expression profiles. PMID:17132828
The single extracytoplasmic-function sigma factor of Xylella fastidiosa is involved in the heat shock response and presents an unusual regulatory mechanism. PMID:17098905
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. PMID:17087822
MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies. PMID:16987406
Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa. PMID:16885450
Standardizing the standards. PMID:16738556
Whose data set is it anyway? Sharing raw data from randomized trials. PMID:16704733
ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis. PMID:16381943
Storage and retrieval of microarray data and open source microarray database software. PMID:15988049
Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis. PMID:15734912
ArrayExpress--a public repository for microarray gene expression data at the EBI. PMID:15608260
The European Bioinformatics Institute's data resources: towards systems biology. PMID:15608238
DDBJ in collaboration with mass-sequencing teams on annotation. PMID:15608189
Tags:
Tags
More detailed information about this field from each metasource.
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.869248
Tags
More detailed information about this field from each metasource.
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.869248
microarray experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.869248
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.869248
biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.869248
gene expression microarray experiment gene transcripts
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