EXPath

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EXPath

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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expath

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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Other names: expath

EXPath is a database resource that collects and utilizes expression profiles derived from microarray under various conditions to infer metabolic pathways for six model plants: Arabidopsis thaliana, Oryza sativa, Zea mays, Solanum lycopersicum, Glycine max, and Medicago truncatula. Five main functions in EXPath are as follows.

Webpage:

Publications:

Publications

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EXPath: a database of comparative expression analysis inferring metabolic pathways for plants
PMID: 25708775

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways
PMID: 32898258

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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• EXPath: a database of comparative expression analysis inferring metabolic pathways for plants PubMed citations: 20.

  20 articles citing: EXPath: a database of comparative expression analysis inferring metabolic pathways for plants

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  Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management. PMID:34721467

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  Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana. PMID:34381973

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  Identification of Novel miRNAs and Their Target Genes in the Response to Abscisic Acid in Arabidopsis. PMID:34281207

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  Meta-Analysis of Yield-Related and N-Responsive Genes Reveals Chromosomal Hotspots, Key Processes and Candidate Genes for Nitrogen-Use Efficiency in Rice. PMID:34168661

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  Transcriptome and genome sequencing elucidates the molecular basis for the high yield and good quality of the hybrid rice variety Chuanyou6203. PMID:33203889

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  Comparative transcriptomics reveals hidden issues in the plant response to arthropod herbivores. PMID:33085192

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  Transcriptomic and network analyses reveal distinct nitrate responses in light and dark in rice leaves (Oryza sativa Indica var. Panvel1). PMID:32699267

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  Generation of fruit postharvest gene datasets and a novel motif analysis tool for functional studies: uncovering links between peach fruit heat treatment and cold storage responses. PMID:31950388

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  Genome-Wide Association Analysis Dissects the Genetic Basis of the Grain Carbon and Nitrogen Contents in Milled Rice. PMID:31889226

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  Genome-Wide Association Analysis of the Genetic Basis for Sheath Blight Resistance in Rice. PMID:31853678

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  Proteomic Changes in the Sound Vibration-Treated Arabidopsis thaliana Facilitates Defense Response during Botrytis cinerea Infection. PMID:31832041

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  Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice. PMID:31712918

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  Infrastructures of systems biology that facilitate functional genomic study in rice. PMID:30874968

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  The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice. PMID:30337936

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  PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System. PMID:30266409

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  Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22. PMID:29133823

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  EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data. PMID:28338930

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  Exogenous glutamate rapidly induces the expression of genes involved in metabolism and defense responses in rice roots. PMID:28212609

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  Protocorms and Protocorm-Like Bodies Are Molecularly Distinct from Zygotic Embryonic Tissues in Phalaenopsis aphrodite. PMID:27338813

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  PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants. PMID:26476450
• EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways PubMed citations: 1.

  1 articles citing: EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways

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  Evolution of 14-3-3 Proteins in Angiosperm Plants: Recurring Gene Duplication and Loss. PMID:34961196

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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transcription factors and regulatory sites

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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endocrinology and metabolism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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microarray experiment

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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gene regulation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:46.038604

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molecular interactions, pathways and networks transcription factors and regulatory sites endocrinology and metabolism microarray experiment gene regulation