miRNEST
Names
More detailed information about this field from each metasource.
miRNEST
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
mirnest
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
Names
More detailed information about this field from each metasource.
miRNEST
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
mirnest
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
Names
More detailed information about this field from each metasource.
miRNEST
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
mirnest
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. The data comes from our computational predictions (new miRNAs, targets, mirtrons, miRNA gene structures) as well as from other databases and publications.
Description
More detailed information about this field from each metasource.
miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. The data comes from our computational predictions (new miRNAs, targets, mirtrons, miRNA gene structures) as well as from other databases and publications.
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
microRNAs in animal and plant EST sequences
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
miRNEST: a comprehensive database of animal, plant and virus microRNAs.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
Webpage:
http://mirnest.amu.edu.plWebpage
More detailed information about this field from each metasource.
http://mirnest.amu.edu.pl
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://rhesus.amu.edu.pl/mirnest/copy/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
Publications:
Publications
More detailed information about this field from each metasource.
miRNEST 2.0: a database of plant and animal microRNAs
PMID: 24243848
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
miRNEST database: an integrative approach in microRNA search and annotation
PMID: 22135287
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
http://dx.doi.org/10.1093/nar/gkt1156
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
miRNEST 2.0: a database of plant and animal microRNAs
PMID: 24243848
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
miRNEST database: an integrative approach in microRNA search and annotation
PMID: 22135287
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
http://dx.doi.org/10.1093/nar/gkt1156
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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miRNEST 2.0: a database of plant and animal microRNAs
PubMed citations: 26.
26 articles citing: miRNEST 2.0: a database of plant and animal microRNAs
Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants. PMID:35409060
Recent trends in miRNA therapeutics and the application of plant miRNA for prevention and treatment of human diseases. PMID:35382490
Plastid retrograde regulation of miRNA expression in response to light stress. PMID:35346032
An Integrated Bioinformatics and Functional Approach for miRNA Validation. PMID:35325428
MicroRNA-mediated bioengineering for climate-resilience in crops. PMID:34747296
Computational Detection of Pre-microRNAs. PMID:34432278
MicroRNA Databases and Tools. PMID:34432277
emiRIT: a text-mining-based resource for microRNA information. PMID:34048547
The role of miRNA in plant-virus interaction: a review. PMID:33772417
Abiotic Stress-Responsive miRNA and Transcription Factor-Mediated Gene Regulatory Network in Oryza sativa: Construction and Structural Measure Study. PMID:33643383
Research Tools for the Functional Genomics of Plant miRNAs During Zygotic and Somatic Embryogenesis. PMID:32674459
The Regulatory Roles of Non-coding RNAs in Angiogenesis and Neovascularization From an Epigenetic Perspective. PMID:31709179
RumimiR: a detailed microRNA database focused on ruminant species. PMID:31608376
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
MepmiRDB: a medicinal plant microRNA database. PMID:31231773
miRNomes involved in imparting thermotolerance to crop plants. PMID:30498670
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Trends in the development of miRNA bioinformatics tools. PMID:29982332
Alternative miRNAs? Human sequences misidentified as plant miRNAs in plant studies and in human plasma. PMID:29744036
microRNAs and Their Targets in Apple (Malus domestica cv. "Fuji") Involved in Response to Infection of Pathogen Valsa mali. PMID:29270184
Identification and Characterization of miRNA Transcriptome in Asiatic Cotton (Gossypium arboreum) Using High Throughput Sequencing. PMID:28663752
A Comprehensive Prescription for Plant miRNA Identification. PMID:28174574
A comprehensive view of the web-resources related to sericulture. PMID:27307138
PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes. PMID:26887375
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants. PMID:26453491
VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets. PMID:25380780 -
miRNEST database: an integrative approach in microRNA search and annotation
PubMed citations: 20.
20 articles citing: miRNEST database: an integrative approach in microRNA search and annotation
Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants. PMID:35409060
ASRmiRNA: Abiotic Stress-Responsive miRNA Prediction in Plants by Using Machine Learning Algorithms with Pseudo K-Tuple Nucleotide Compositional Features. PMID:35163534
The role of miRNA in plant-virus interaction: a review. PMID:33772417
miRNomes involved in imparting thermotolerance to crop plants. PMID:30498670
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Non-coding RNAs and plant male sterility: current knowledge and future prospects. PMID:29332167
Association of uterine fibroids and pregnancy outcomes after ovarian stimulation-intrauterine insemination for unexplained infertility. PMID:28089575
MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants. PMID:27379117
A comprehensive view of the web-resources related to sericulture. PMID:27307138
High-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation (HITS-CLIP) reveals Argonaute-associated microRNAs and targets in Schistosoma japonicum. PMID:26577460
PNRD: a plant non-coding RNA database. PMID:25398903
Carica papaya microRNAs are responsive to Papaya meleira virus infection. PMID:25072834
Analyzing the microRNA Transcriptome in Plants Using Deep Sequencing Data. PMID:24832228
Computational Identification of MicroRNAs from the Expressed Sequence Tags of Toxic Dinoflagellate Alexandrium Tamarense. PMID:24324323
miRNEST 2.0: a database of plant and animal microRNAs. PMID:24243848
Identification and validation of sugarcane streak mosaic virus-encoded microRNAs and their targets in sugarcane. PMID:24145912
PMTED: a plant microRNA target expression database. PMID:23725466
HuntMi: an efficient and taxon-specific approach in pre-miRNA identification. PMID:23497112
MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting. PMID:23193297
miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations. PMID:22583976 - http://dx.doi.org/10.1093/nar/gkt1156
Tags:
Tags
More detailed information about this field from each metasource.
computational predictions
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
micro rna
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
multiple sequence alignment
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
pre-mirna (pre-microrna)
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
promoter
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna secondary structure
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
regulation of mirna metabolic process
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequencing read
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
target
metasource: Fairsharing.org
version: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
zoology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:30.059736
Tags
More detailed information about this field from each metasource.
computational predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
micro rna
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
multiple sequence alignment
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
pre-mirna (pre-microrna)
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
promoter
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna secondary structure
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
regulation of mirna metabolic process
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequencing read
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
target
metasource: Fairsharing.orgversion: FAIRsharing.org: miRNEST; miRNEST; DOI: https://doi.org/10.25504/FAIRsharing.5pfx4r; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
zoology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
microarray experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:30.059736
computational predictions gene expression polymorphism micro rna multiple sequence alignment pre-mirna (pre-microrna) promoter rna secondary structure rna sequence regulation of mirna metabolic process sequencing read target rna sequence functional, regulatory and non-coding rna zoology plant biology microarray experiment
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