ASRmiRNA: Abiotic Stress-Responsive miRNA Prediction in Plants by Using Machine Learning Algorithms with Pseudo K-Tuple Nucleotide Compositional Features.
PMID:35163534
RAD gene family analysis in cotton provides some key genes for flowering and stress tolerance in upland cotton G. hirsutum.
PMID:35012446
MicroRNA-mediated bioengineering for climate-resilience in crops.
PMID:34747296
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review.
PMID:34439912
MicroRNA Databases and Tools.
PMID:34432277
Genome-Wide Analysis of Coding and Non-coding RNA Reveals a Conserved miR164-NAC-mRNA Regulatory Pathway for Disease Defense in Populus.
PMID:34122520
Onion (Allium cepa L.)-Derived Nanoparticles Inhibited LPS-Induced Nitrate Production, However, Their Intracellular Incorporation by Endocytosis Was Not Involved in This Effect on RAW264 Cells.
PMID:34067155
Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation.
PMID:34025943
Uptake of MicroRNAs from Exosome-Like Nanovesicles of Edible Plant Juice by Rat Enterocytes.
PMID:33916868
MicroRNAs: Potential Targets for Developing Stress-Tolerant Crops.
PMID:33800690
Dicer-like proteins influence Arabidopsis root microbiota independent of RNA-directed DNA methylation.
PMID:33637135
Analysis of Rice Transcriptome Reveals the LncRNA/CircRNA Regulation in Tissue Development.
PMID:33507446
Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets in Oryza sativa indica.
PMID:33163736
Genome-wide analysis of long non-coding RNAs responsive to multiple nutrient stresses in Arabidopsis thaliana.
PMID:33130916
In silico identification and validation of miRNA and their DIR specific targets in Oryza sativa Indica under abiotic stress.
PMID:33024905
Discovery and validation of candidate genes for grain iron and zinc metabolism in pearl millet [Pennisetum glaucum (L.) R. Br.].
PMID:33024155
iMDA-BN: Identification of miRNA-disease associations based on the biological network and graph embedding algorithm.
PMID:33005302
Delineating effect of corn microRNAs and matrix, ingested as whole food, on gut microbiota in a rodent model.
PMID:32884688
A Brief Survey for MicroRNA Precursor Identification Using Machine Learning Methods.
PMID:32655294
GreenCircRNA: a database for plant circRNAs that act as miRNA decoys.
PMID:32510565
Development of a sensitive primer extension method for direct detection and quantification of miRNAs from plants.
PMID:32163493
Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family.
PMID:31996127
Identification and Characterization of circRNAs Responsive to Methyl Jasmonate in Arabidopsis thaliana.
PMID:31991793
PmiREN: a comprehensive encyclopedia of plant miRNAs.
PMID:31602478
MepmiRDB: a medicinal plant microRNA database.
PMID:31231773
Inverse Correlation Between MPSR1 E3 Ubiquitin Ligase and HSP90.1 Balances Cytoplasmic Protein Quality Control.
PMID:30890661
Plant IsomiR Atlas: Large Scale Detection, Profiling, and Target Repertoire of IsomiRs in Plants.
PMID:30723486
Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants.
PMID:30723229
miRNomes involved in imparting thermotolerance to crop plants.
PMID:30498670
Multiple Regression Analysis Reveals MicroRNA Regulatory Networks in Oryza sativa under Drought Stress.
PMID:30402456
Genome-wide profiling of sRNAs in the Verticillium dahliae-infected Arabidopsis roots.
PMID:30181922
A comprehensive review of web-based resources of non-coding RNAs for plant science research.
PMID:29989090
ARMOUR - A Rice miRNA: mRNA Interaction Resource.
PMID:29868062
Integration of the Pokeweed miRNA and mRNA Transcriptomes Reveals Targeting of Jasmonic Acid-Responsive Genes.
PMID:29774043
Alternative miRNAs? Human sequences misidentified as plant miRNAs in plant studies and in human plasma.
PMID:29744036
miRwayDB: a database for experimentally validated microRNA-pathway associations in pathophysiological conditions.
PMID:29688364
Deciphering microRNAs and Their Associated Hairpin Precursors in a Non-Model Plant, Abelmoschus esculentus.
PMID:29657290
NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples.
PMID:29425247
Overexpression of ghr-miR166b generates resistance against Bemisia tabaci infestation in Gossypium hirsutum plants.
PMID:29397416
Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton.
PMID:29334890
Genome-Wide Development of MicroRNA-Based SSR Markers in Medicago truncatula with Their Transferability Analysis and Utilization in Related Legume Species.
PMID:29156589
A novel miRNA analysis framework to analyze differential biological networks.
PMID:29097749
Non-coding RNAs and Their Roles in Stress Response in Plants.
PMID:29017967
Molecular characterization of the 14-3-3 gene family in rice and its expression studies under abiotic stress.
PMID:28956163
Loss of function of Arabidopsis microRNA-machinery genes impairs fertility, and has effects on homologous recombination and meiotic chromatin dynamics.
PMID:28839139
Low genetic diversity and functional constraint of miRNA genes participating pollen-pistil interaction in rice.
PMID:28735504
Identification and Characterization of miRNA Transcriptome in Asiatic Cotton (Gossypium arboreum) Using High Throughput Sequencing.
PMID:28663752
Genome-wide characterization and expression analyses of superoxide dismutase (SOD) genes in Gossypium hirsutum.
PMID:28499417
Systems biology study of transcriptional and post-transcriptional co-regulatory network sheds light on key regulators involved in important biological processes in Citrus sinensis.
PMID:28461722
microRNAs as reference genes for quantitative PCR in cotton.
PMID:28414734
Functional Roles of microRNAs in Agronomically Important Plants-Potential as Targets for Crop Improvement and Protection.
PMID:28382044
Plant miRNAs found in human circulating system provide evidences of cross kingdom RNAi.
PMID:28361700
A Comprehensive Prescription for Plant miRNA Identification.
PMID:28174574
RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression.
PMID:28025342
Time-Course Small RNA Profiling Reveals Rice miRNAs and Their Target Genes in Response to Rice Stripe Virus Infection.
PMID:27626631
Circulating plant miRNAs can regulate human gene expression in vitro.
PMID:27604570
miRNA: A Novel Link Between Rice Ragged Stunt Virus and Oryza sativa.
PMID:27570315
Role of plant MicroRNA in cross-species regulatory networks of humans.
PMID:27502923
MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants.
PMID:27379117
Expression Profiles, Characterization and Function of HbTCTP in Rubber Tree (Hevea brasiliensis).
PMID:27375647
The impact of feature selection on one and two-class classification performance for plant microRNAs.
PMID:27366641
SorghumFDB: sorghum functional genomics database with multidimensional network analysis.
PMID:27352859
Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants.
PMID:27190509
Deep-sequence profiling of miRNAs and their target prediction in Monotropa hypopitys.
PMID:27097902
PmiRExAt: plant miRNA expression atlas database and web applications.
PMID:27081157
One Step Forward, Two Steps Back; Xeno-MicroRNAs Reported in Breast Milk Are Artifacts.
PMID:26824347
Identification and Expression Analyses of miRNAs from Two Contrasting Flower Color Cultivars of Canna by Deep Sequencing.
PMID:26799570
Functional analysis of the Arabidopsis thaliana MUTE promoter reveals a regulatory region sufficient for stomatal-lineage expression.
PMID:26748914
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution.
PMID:26578966
Motif content comparison between monocot and dicot species.
PMID:26484161
Promoter methylation regulates the abundance of osa-miR393a in contrasting rice genotypes under salinity stress.
PMID:26319531
Comprehensive meta-analysis, co-expression, and miRNA nested network analysis identifies gene candidates in citrus against Huanglongbing disease.
PMID:26215595
Transcripts and MicroRNAs Responding to Salt Stress in Musa acuminata Colla (AAA Group) cv. Berangan Roots.
PMID:25993649
Identification of MicroRNAs and their Targets Associated with Embryo Abortion during Chrysanthemum Cross Breeding via High-Throughput Sequencing.
PMID:25909659
An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress.
PMID:25903161
Lipopolysaccharide perception leads to dynamic alterations in the microtranscriptome of Arabidopsis thaliana cells and leaf tissues.
PMID:25848807
Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods.
PMID:25826400
The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants.
PMID:25530158
Regulation of MAP kinase signaling cascade by microRNAs in Oryza sativa.
PMID:25482813
PNRD: a plant non-coding RNA database.
PMID:25398903
VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets.
PMID:25380780
Identification and characterization of cold-responsive microRNAs in tea plant (Camellia sinensis) and their targets using high-throughput sequencing and degradome analysis.
PMID:25330732
Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings.
PMID:25273267
Construction and analysis of microRNA-transcription factor regulation network in Arabidopsis.
PMID:25014374
Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis.
PMID:24989046
In silico prediction of cotton (Gossypium hirsutum) encoded microRNAs targets in the genome of Cotton leaf curl Allahabad virus.
PMID:24966530
In silico identification of plant miRNAs in mammalian breast milk exosomes--a small step forward?
PMID:24933019
Dual RNA-seq transcriptional analysis of wheat roots colonized by Azospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes.
PMID:24886190
Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.).
PMID:24885911
SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways.
PMID:24712981
Next Generation Sequencing of miRNAs - Strategies, Resources and Methods.
PMID:24710011
The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates.
PMID:24681619
Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis.
PMID:24559317
Computational developments in microRNA-regulated protein-protein interactions.
PMID:24507415
High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves.
PMID:24245539
miRNEST 2.0: a database of plant and animal microRNAs.
PMID:24243848
Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in rice.
PMID:24235132
Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum).
PMID:24228715
"A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids".
PMID:24094114
A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon.
PMID:24000894
Computational identification of conserved microRNAs and their putative targets in the Hypericum perforatum L. flower transcriptome.
PMID:23846415
PMTED: a plant microRNA target expression database.
PMID:23725466
Current challenges and future potential of tomato breeding using omics approaches.
PMID:23641179
PlantGSEA: a gene set enrichment analysis toolkit for plant community.
PMID:23632162
MicroRNAs play critical roles during plant development and in response to abiotic stresses.
PMID:23412556
Genomewide analysis of intronic microRNAs in rice and Arabidopsis.
PMID:23271017
Genome-wide identification of miRNAs responsive to drought in peach (Prunus persica) by high-throughput deep sequencing.
PMID:23227166
Finding microRNA targets in plants: current status and perspectives.
PMID:23200136
MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting.
PMID:23193297
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology.
PMID:23193278
Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars.
PMID:23171001
Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice.
PMID:23145152
Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes.
PMID:22987666
Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection.
PMID:22987114
'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana.
PMID:22800758
miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.
PMID:22583976
Genome organization and characteristics of soybean microRNAs.
PMID:22559273
Next generation sequencing for profiling expression of miRNAs: technical progress and applications in drug development.
PMID:22457835
AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome.
PMID:22369158
Transgene silencing and transgene-derived siRNA production in tobacco plants homozygous for an introduced AtMYB90 construct.
PMID:22363419
Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis.
PMID:22361011
Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets.
PMID:22330773
miRNEST database: an integrative approach in microRNA search and annotation.
PMID:22135287
Analysis of conserved microRNAs in floral tissues of sexual and apomictic Boechera species.
PMID:21988906
Boron-dependent degradation of NIP5;1 mRNA for acclimation to excess boron conditions in Arabidopsis.
PMID:21908722
ETOILE regulates developmental patterning in the filamentous brown alga Ectocarpus siliculosus.
PMID:21478443
Characterization of statistical features for plant microRNA prediction.
PMID:21324149
PmiRKB: a plant microRNA knowledge base.
PMID:20719744
Plant microRNAs and their role in defense against viruses: a bioinformatics approach.
PMID:20594353
A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1 locus LRR-Kinase on soybean cyst nematode resistance.
PMID:20529370
Genomics and bioinformatics resources for crop improvement.
PMID:20208064