The European Genome-phenome Archive
Names
More detailed information about this field from each metasource.
The European Genome-phenome Archive
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
EGA
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
ega
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
Names
More detailed information about this field from each metasource.
The European Genome-phenome Archive
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
EGA
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
ega
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
Names
More detailed information about this field from each metasource.
The European Genome-phenome Archive
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
EGA
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
ega
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
The European Genome-phenome Archive (EGA) allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).
Description
More detailed information about this field from each metasource.
The European Genome-phenome Archive (EGA) allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The European Genome-phenome Archive (EGA) is designed to be a repository for all types of sequence and genotype experiments, including case-control, population, and family studies. We will include SNP and CNV genotypes from array based methods and genotyping done with re-sequencing methods. The EGA will serve as a permanent archive that will archive several levels of data including the raw data (which could, for example, be re-analysed in the future by other algorithms) as well as the genotype calls provided by the submitters. We are developing data mining and access tools for the database. For controlled access data, the EGA will provide the necessary security required to control access, and maintain patient confidentiality, while providing access to those researchers and clinicians authorised to view the data. In all cases, data access decisions will be made by the appropriate data access-granting organisation (DAO) and not by the EGA. The DAO will normally be the same organisation that approved and monitored the initial study protocol or a designate of this approving organisation. The European Genome-phenome Archive (EGA) allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).
metasource: re3data.orgversion: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
European genome-phenome Archive (EGA) - service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
Webpage:
https://ega-archive.org/Webpage
More detailed information about this field from each metasource.
https://ega-archive.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
Licence:
Name: EGA Legal Notice and Terms of Data UseLicence name
More detailed information about this field from each metasource.
EGA Legal Notice and Terms of Data Use
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
other
metasource: re3data.orgversion: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://ega-archive.org/legal-notice
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://ega-archive.org/submission/dac/documentation#DAA
metasource: re3data.orgversion: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
The European Nucleotide Archive
PMID: 20972220
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The European Genome-phenome Archive of human data consented for biomedical research
PMID: 26111507
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1038/ng.3312
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
Publications
More detailed information about this field from each metasource.
The European Nucleotide Archive
PMID: 20972220
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The European Genome-phenome Archive of human data consented for biomedical research
PMID: 26111507
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1038/ng.3312
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
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The European Nucleotide Archive
PubMed citations: 199.
199 articles citing: The European Nucleotide Archive
Ecosystem-specific microbiota and microbiome databases in the era of big data. PMID:35842686
Meta-Analysis Suggests That Intron Retention Can Affect Quantification of Transposable Elements from RNA-Seq Data. PMID:35741347
Network approaches for modeling the effect of drugs and diseases. PMID:35704883
Microbial Community Analysis and Food Safety Practice Survey-Based Hazard Identification and Risk Assessment for Controlled Environment Hydroponic/Aquaponic Farming Systems. PMID:35663856
Codon-specific Ramachandran plots show amino acid backbone conformation depends on identity of the translated codon. PMID:35595777
Inter-paralog amino acid inversion events in large phylogenies of duplicated proteins. PMID:35377869
Global Distribution of mcr Gene Variants in 214K Metagenomic Samples. PMID:35343801
Genomic Characteristics of Recently Recognized Vibrio cholerae El Tor Lineages Associated with Cholera in Bangladesh, 1991 to 2017. PMID:35315699
Increasing transparency and reproducibility in stroke-microbiota research: A toolbox for microbiota analysis. PMID:35310944
Advancing discovery in hearing research via biologist-friendly access to multi-omic data. PMID:35235019
Reference-free discovery of nuclear SNPs permits accurate, sensitive identification of Carya (hickory) species and hybrids. PMID:35228913
MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences. PMID:35134858
Endothelial Cell RNA-Seq Data: Differential Expression and Functional Enrichment Analyses to Study Phenotypic Switching. PMID:35099752
CyVerse for Reproducible Research: RNA-Seq Analysis. PMID:35037200
GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells. PMID:34928370
Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR). PMID:34850831
BioSamples database: FAIRer samples metadata to accelerate research data management. PMID:34747489
Music of metagenomics-a review of its applications, analysis pipeline, and associated tools. PMID:34657989
Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates. PMID:34570776
Vision, challenges and opportunities for a Plant Cell Atlas. PMID:34491200
Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C. PMID:34454581
RNA Sequencing Analyses for Deciphering Potato Molecular Responses. PMID:34448155
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis. PMID:34376217
Clinical and Molecular Heterogeneity in Patients with Innate Resistance to Anti-PD-1 +/- Anti-CTLA-4 Immunotherapy in Metastatic Melanoma Reveals Distinct Therapeutic Targets. PMID:34202352
Comprehensive Comparison of RNA-Seq Data of SARS-CoV-2, SARS-CoV and MERS-CoV Infections: Alternative Entry Routes and Innate Immune Responses. PMID:34122413
Investigating the impact of reference assembly choice on genomic analyses in a cattle breed. PMID:34011274
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. PMID:33944776
Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves. PMID:33906403
AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae. PMID:33897984
Dual RNA Sequencing Meta-analysis in Plasmodium Infection Identifies Host-Parasite Interactions. PMID:33879496
Challenges in Clinicogenetic Correlations: One Phenotype - Many Genes. PMID:33816658
Consensus Transcriptional Landscape of Human End-Stage Heart Failure. PMID:33787284
Large-scale labeling and assessment of sex bias in publicly available expression data. PMID:33784977
Clinical and genomic assessment of PD-L1 SP142 expression in triple-negative breast cancer. PMID:33770313
Molecular and computational approaches to map regulatory elements in 3D chromatin structure. PMID:33741028
DNA Metabarcoding for the Characterization of Terrestrial Microbiota-Pitfalls and Solutions. PMID:33673098
Massive expansion of human gut bacteriophage diversity. PMID:33606979
Genome-Scale Profiling Reveals Noncoding Loci Carry Higher Proportions of Concordant Data. PMID:33528497
Gene co-expression network analysis of Trypanosoma brucei in tsetse fly vector. PMID:33482903
Essential interpretations of bioinformatics in COVID-19 pandemic. PMID:33349792
Fungi.guru: Comparative genomic and transcriptomic resource for the fungi kingdom. PMID:33304470
A review of COVID-19 biomarkers and drug targets: resources and tools. PMID:33279954
MDR M. tuberculosis outbreak clone in Eswatini missed by Xpert has elevated bedaquiline resistance dated to the pre-treatment era. PMID:33239092
The on-premise data sharing infrastructure e!DAL: Foster FAIR data for faster data acquisition. PMID:33090199
Ten simple rules for annotating sequencing experiments. PMID:33017400
A gene prioritization method based on a swine multi-omics knowledgebase and a deep learning model. PMID:32913254
Systems biology of acidophile biofilms for efficient metal extraction. PMID:32636389
LSTrAP-Cloud: A User-Friendly Cloud Computing Pipeline to Infer Coexpression Networks. PMID:32316247
Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium. PMID:32186507
A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project. PMID:32153629
An α/β-Hydrolase Fold Subfamily Comprising Pseudomonas Quinolone Signal-Cleaving Dioxygenases. PMID:32086305
Integrating Computational Methods to Investigate the Macroecology of Microbiomes. PMID:32010196
Reducing the structure bias of RNA-Seq reveals a large number of non-annotated non-coding RNA. PMID:31980822
FilTar: using RNA-Seq data to improve microRNA target prediction accuracy in animals. PMID:31930382
Integrative Analysis of Axolotl Gene Expression Data from Regenerative and Wound Healing Limb Tissues. PMID:31889169
A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota. PMID:31882601
The diversity and abundance of fungi and bacteria on the healthy and dandruff affected human scalp. PMID:31851674
CRUP: a comprehensive framework to predict condition-specific regulatory units. PMID:31699133
Computational approaches to therapeutic antibody design: established methods and emerging trends. PMID:31626279
Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509
Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved. PMID:31504783
A hierarchy of environmental covariates control the global biogeography of soil bacterial richness. PMID:31431661
Improving the diagnostic yield of exome- sequencing by predicting gene-phenotype associations using large-scale gene expression analysis. PMID:31253775
Metabolic Dependencies Underlie Interaction Patterns of Gut Microbiota During Enteropathogenesis. PMID:31214144
Cyberbiosecurity Challenges of Pathogen Genome Databases. PMID:31157218
Yvis: antibody high-density alignment visualization and analysis platform with an integrated database. PMID:31106372
Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae. PMID:30832565
FAIRness and Usability for Open-access Omics Data Systems. PMID:30815061
Supplementation with dairy matrices impacts on homocysteine levels and gut microbiota composition of hyperhomocysteinemic mice. PMID:30701305
Urotensin-related gene transcripts mark developmental emergence of the male forebrain vocal control system in songbirds. PMID:30692609
Multi-study inference of regulatory networks for more accurate models of gene regulation. PMID:30677040
A resource of variant effect predictions of single nucleotide variants in model organisms. PMID:30573687
SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data. PMID:30481257
Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome. PMID:30455975
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. PMID:30412219
Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion. PMID:30333805
Exploring biogeographic patterns of bacterioplankton communities across global estuaries. PMID:30303297
Phylogeny-corrected identification of microbial gene families relevant to human gut colonization. PMID:30091981
Gene Discovery of Characteristic Metabolic Pathways in the Tea Plant (Camellia sinensis) Using 'Omics'-Based Network Approaches: A Future Perspective. PMID:29915604
Disbiome database: linking the microbiome to disease. PMID:29866037
Landscape of Microsatellite Instability Across 39 Cancer Types. PMID:29850653
Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases. PMID:29659563
Ten steps to get started in Genome Assembly and Annotation. PMID:29568489
Landscape of the spliced leader trans-splicing mechanism in Schistosoma mansoni. PMID:29497070
Use of a Regression Model to Study Host-Genomic Determinants of Phage Susceptibility in MRSA. PMID:29382143
Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses. PMID:29325581
Daptomycin Resistance in Clinical MRSA Strains Is Associated with a High Biological Fitness Cost. PMID:29259579
Functional sequencing read annotation for high precision microbiome analysis. PMID:29194524
Don't just dump your data and run: Authors should submit as much experimental information as possible when uploading sequence data. PMID:29079656
Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane's "species minimum" concept. PMID:29043106
Impact of supplementation with a food-derived microbial community on obesity-associated inflammation and gut microbiota composition. PMID:29043005
Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests. PMID:29036314
PATRIC as a unique resource for studying antimicrobial resistance. PMID:28968762
Mitotic transcription and waves of gene reactivation during mitotic exit. PMID:28912132
Microbial communities in the reef water at Kham Island, lower Gulf of Thailand. PMID:28828243
Pancreatic PYY but not PPY expression is responsive to short-term nutritional state and the pancreas constitutes the major site of PYY mRNA expression in chickens. PMID:28694054
Gene co-expression network connectivity is an important determinant of selective constraint. PMID:28406900
Biocuration in the structure-function linkage database: the anatomy of a superfamily. PMID:28365730
Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. PMID:28043950
Defining the purity of exosomes required for diagnostic profiling of small RNA suitable for biomarker discovery. PMID:28005467
The ability of human nuclear DNA to cause false positive low-abundance heteroplasmy calls varies across the mitochondrial genome. PMID:27955616
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. PMID:27899627
Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production. PMID:27599479
CicerTransDB 1.0: a resource for expression and functional study of chickpea transcription factors. PMID:27472917
A catalog of hemizygous variation in 127 22q11 deletion patients. PMID:27274857
Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned. PMID:27255914
OM-FBA: Integrate Transcriptomics Data with Flux Balance Analysis to Decipher the Cell Metabolism. PMID:27100883
De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting. PMID:27056411
The real cost of sequencing: scaling computation to keep pace with data generation. PMID:27009100
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins. PMID:26980520
Ensembl regulation resources. PMID:26888907
High yield 1,3-propanediol production by rational engineering of the 3-hydroxypropionaldehyde bottleneck in Citrobacter werkmanii. PMID:26822953
Tissue Restricted Splice Junctions Originate Not Only from Tissue-Specific Gene Loci, but Gene Loci with a Broad Pattern of Expression. PMID:26713731
WheatExp: an RNA-seq expression database for polyploid wheat. PMID:26705106
Reproducible features of small RNAs in C. elegans reveal NU RNAs and provide insights into 22G RNAs and 26G RNAs. PMID:26647462
BioDB extractor: customized data extraction system for commonly used bioinformatics databases. PMID:26516349
Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses. PMID:26492264
Big Data: the challenge for small research groups in the era of cancer genomics. PMID:26492224
JRC GMO-Amplicons: a collection of nucleic acid sequences related to genetically modified organisms. PMID:26424080
Codon-level information improves predictions of inter-residue contacts in proteins by correlated mutation analysis. PMID:26371555
Identifying and characterising key alternative splicing events in Drosophila development. PMID:26275604
Assessing the global phylum level diversity within the bacterial domain: A review. PMID:26257925
Comprehensive assembly of novel transcripts from unmapped human RNA-Seq data and their association with cancer. PMID:26253570
A framework for improving microRNA prediction in non-human genomes. PMID:26163062
GenomePeek-an online tool for prokaryotic genome and metagenome analysis. PMID:26157610
Data analysis: Create a cloud commons. PMID:26156357
MLgsc: A Maximum-Likelihood General Sequence Classifier. PMID:26148002
Possible Human Papillomavirus 38 Contamination of Endometrial Cancer RNA Sequencing Samples in The Cancer Genome Atlas Database. PMID:26085148
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies. PMID:25983555
Plasmodium knowlesi genome sequences from clinical isolates reveal extensive genomic dimorphism. PMID:25830531
Malleable nature of mRNA-protein compositional complementarity and its functional significance. PMID:25753660
Biological databases for human research. PMID:25712261
Mining for viral fragments in methylation enriched sequencing data. PMID:25699076
[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis. PMID:25654171
Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach. PMID:25632945
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. PMID:25573919
Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson's disease. PMID:25528190
Triticeae resources in Ensembl Plants. PMID:25432969
The era of integrative genomics: more data or better methods? PMID:25431938
The characteristics of rare codon clusters in the genome and proteins of hepatitis C virus; a bioinformatics look. PMID:25349685
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. PMID:25348402
Detection of atypical genes in virus families using a one-class SVM. PMID:25336138
Complete Genome Sequences of Virulent Mycoplasma capricolum subsp. capripneumoniae Strains F38 and ILRI181. PMID:25323717
Detailed comparison of two popular variant calling packages for exome and targeted exon studies. PMID:25289185
Renal Gene Expression Database (RGED): a relational database of gene expression profiles in kidney disease. PMID:25252782
DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly. PMID:25236618
Defining the estimated core genome of bacterial populations using a Bayesian decision model. PMID:25144616
OptiType: precision HLA typing from next-generation sequencing data. PMID:25143287
Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand. PMID:25037613
The Amordad database engine for metagenomics. PMID:24974201
The International Cancer Genome Consortium's evolving data-protection policies. PMID:24911490
Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials. PMID:24710002
The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again. PMID:24564732
GeneSV - an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences. PMID:24453480
DDBJ progress report: a new submission system for leading to a correct annotation. PMID:24194602
Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive. PMID:24167589
Integrative 'omic' approach towards understanding the nature of human diseases. PMID:24052743
A new RNA-seq method to detect the transcription and non-coding RNA in prostate cancer. PMID:24043589
Draft Genome Sequence of the Virulent Clostridium chauvoei Reference Strain JF4335. PMID:23950118
Draft Genome Sequence of the Virulent Avibacterium paragallinarum Serotype A Strain JF4211 and Identification of Two Toxins. PMID:23950117
Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene. PMID:23815980
Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research. PMID:23759993
Testing for rare variant associations in the presence of missing data. PMID:23757187
DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. PMID:23657089
The challenges of delivering bioinformatics training in the analysis of high-throughput data. PMID:23543353
CistromeFinder for ChIP-seq and DNase-seq data reuse. PMID:23508969
One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012. PMID:23494302
The annotation-enriched non-redundant patent sequence databases. PMID:23396323
Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing. PMID:23308154
Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand. PMID:23282134
The origins of the evolutionary signal used to predict protein-protein interactions. PMID:23217198
GenBank. PMID:23193287
Genenames.org: the HGNC resources in 2013. PMID:23161694
HBVdb: a knowledge database for Hepatitis B Virus. PMID:23125365
Gene Fusion Markup Language: a prototype for exchanging gene fusion data. PMID:23072312
A next-generation sequencing approach to study the transcriptomic changes during the differentiation of physarum at the single-cell level. PMID:23071390
Online tools for bioinformatics analyses in nutrition sciences. PMID:22983844
ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data. PMID:22900082
Sequence signatures of direct complementarity between mRNAs and cognate proteins on multiple levels. PMID:22844092
Fungal genome resources at NCBI. PMID:22737589
Expression sequence tag library derived from peripheral blood mononuclear cells of the chlorocebus sabaeus. PMID:22726727
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. PMID:22684630
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events. PMID:22467916
Solving the Problem: Genome Annotation Standards before the Data Deluge. PMID:22180819
GenBank. PMID:22144687
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. PMID:22135293
GeneDB--an annotation database for pathogens. PMID:22116062
The BioSample Database (BioSD) at the European Bioinformatics Institute. PMID:22096232
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID:22064864
pubmed2ensembl: a resource for mining the biological literature on genes. PMID:21980353
Developing and implementing an institute-wide data sharing policy. PMID:21955348
RNAcentral: A vision for an international database of RNA sequences. PMID:21940779
Assessing and managing risk when sharing aggregate genetic variant data. PMID:21921928
Cistrome: an integrative platform for transcriptional regulation studies. PMID:21859476
Spatial analyses of mono, di and trinucleotide trends in plant genes. PMID:21829660
SEED: efficient clustering of next-generation sequences. PMID:21810899
Databases and resources for human small non-coding RNAs. PMID:21504869
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
The International Nucleotide Sequence Database Collaboration. PMID:21106499 -
The European Genome-phenome Archive of human data consented for biomedical research
PubMed citations: 162.
162 articles citing: The European Genome-phenome Archive of human data consented for biomedical research
An in-library ligation strategy and its application in CRISPR/Cas9 screening of high-order gRNA combinations. PMID:35670669
Exploration of the System-Level Mechanisms of the Herbal Drug FDY003 for Pancreatic Cancer Treatment: A Network Pharmacological Investigation. PMID:35591866
Opportunities and challenges for the use of common controls in sequencing studies. PMID:35581355
Integrating whole genome sequencing, methylation, gene expression, topological associated domain information in regulatory mutation prediction: A study of follicular lymphoma. PMID:35495111
A quality control portal for sequencing data deposited at the European genome-phenome archive. PMID:35438138
The Cancer Research Database (CRDB): Integrated Platform to Gain Statistical Insight Into the Correlation Between Cancer and COVID-19. PMID:35430561
FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research. PMID:35418585
Whole-genome sequencing of 1,171 elderly admixed individuals from São Paulo, Brazil. PMID:35246524
Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. PMID:35186042
The RD-Connect Genome-Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases. PMID:35178824
Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases. PMID:35134823
CIBERER: Spanish national network for research on rare diseases: A highly productive collaborative initiative. PMID:35060122
Genome and transcriptome profiling of spontaneous preterm birth phenotypes. PMID:35046466
Flimma: a federated and privacy-aware tool for differential gene expression analysis. PMID:34906207
Integration of Mutational Signature Analysis with 3D Chromatin Data Unveils Differential AID-Related Mutagenesis in Indolent Lymphomas. PMID:34884820
Expression Atlas update: gene and protein expression in multiple species. PMID:34850121
GA4GH Passport standard for digital identity and access permissions. PMID:34820660
The Data Use Ontology to streamline responsible access to human biomedical datasets. PMID:34820659
The European Genome-phenome Archive in 2021. PMID:34791407
Case Report: Contiguous Xq22.3 Deletion Associated with ATS-ID Syndrome: From Genotype to Further Delineation of the Phenotype. PMID:34777475
DNA Data Bank of Japan (DDBJ) update report 2021. PMID:34751405
BioSamples database: FAIRer samples metadata to accelerate research data management. PMID:34747489
BAMboozle removes genetic variation from human sequence data for open data sharing. PMID:34711808
Ethics of DNA research on human remains: five globally applicable guidelines. PMID:34671160
Systematic investigation of cytokine signaling activity at the tissue and single-cell levels. PMID:34594031
Deep learning in cancer diagnosis, prognosis and treatment selection. PMID:34579788
The Porto European Cancer Research Summit 2021. PMID:34515408
ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects. PMID:34500462
Mendelian Randomization in Stroke: A Powerful Approach to Causal Inference and Drug Target Validation. PMID:34456968
The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. PMID:34400360
EBiSC best practice: How to ensure optimal generation, qualification, and distribution of iPSC lines. PMID:34380020
Chromosomal Translocations in NK-Cell Lymphomas Originate from Inter-Chromosomal Contacts of Active rDNA Clusters Possessing Hot Spots of DSBs. PMID:34359791
Clinical Genetic Risk Variants Inform a Functional Protein Interaction Network for Tetralogy of Fallot. PMID:34328347
A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl. PMID:34289008
Meta-Analysis of Microdissected Breast Tumors Reveals Genes Regulated in the Stroma but Hidden in Bulk Analysis. PMID:34282769
Extensive three-dimensional intratumor proteomic heterogeneity revealed by multiregion sampling in high-grade serous ovarian tumor specimens. PMID:34278265
Recommendations for the FAIRification of genomic track metadata. PMID:34249331
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. PMID:34048576
Targeting the epichaperome as an effective precision medicine approach in a novel PML-SYK fusion acute myeloid leukemia. PMID:34040147
Minimized combinatorial CRISPR screens identify genetic interactions in autophagy. PMID:33956155
Advances in Genomic Discovery and Implications for Personalized Prevention and Medicine: Estonia as Example. PMID:33946982
Integrative reconstruction of cancer genome karyotypes using InfoGenomeR. PMID:33927198
Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects. PMID:33794662
Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELD. PMID:33784300
A novel machine learning approach (svmSomatic) to distinguish somatic and germline mutations using next-generation sequencing data. PMID:33709636
Identification of the hub gene BUB1B in hepatocellular carcinoma via bioinformatic analysis and in vitro experiments. PMID:33665036
Kalirin-RAC controls nucleokinetic migration in ADRN-type neuroblastoma. PMID:33658318
Digital phenotyping and sensitive health data: Implications for data governance. PMID:33647989
The extracellular matrix phenome across species. PMID:33543035
The Genomic Landscape of Actinic Keratosis. PMID:33482222
Current status of use of high throughput nucleotide sequencing in rheumatology. PMID:33408124
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. PMID:33279989
A review of COVID-19 biomarkers and drug targets: resources and tools. PMID:33279954
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. PMID:33245775
A Five-Gene-Pair-Based Prognostic Signature for Predicting the Relapse Risk of Early Stage ER+ Breast Cancer. PMID:33193655
DDBJ update: streamlining submission and access of human data. PMID:33156332
Diagnostic and prognostic value of thymidylate synthase expression in breast cancer. PMID:33030246
Key insights in the AIDA community policy on sharing of clinical imaging data for research in Sweden. PMID:33024103
Ten simple rules for annotating sequencing experiments. PMID:33017400
Cell motility and migration as determinants of stem cell efficacy. PMID:32920368
Genetic underpinnings of cerebral edema in acute brain injury: an opportunity for pathway discovery. PMID:32464484
Connecting data, tools and people across Europe: ELIXIR's response to the COVID-19 pandemic. PMID:32415272
Multi-Gene Prognostic Signatures and Prediction of Pathological Complete Response to Neoadjuvant Chemotherapy in ER-positive, HER2-negative Breast Cancer Patients. PMID:32369904
Genetically Elevated LDL Associates with Lower Risk of Intracerebral Hemorrhage. PMID:32277781
GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets. PMID:32249310
A Fast and Simple Method for Detecting Identity-by-Descent Segments in Large-Scale Data. PMID:32169169
Genetic Variation and Response to Neurocritical Illness: a Powerful Approach to Identify Novel Pathophysiological Mechanisms and Therapeutic Targets. PMID:31975153
Open Data for Differential Network Analysis in Glioma. PMID:31952211
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. PMID:31950984
DDBJ Database updates and computational infrastructure enhancement. PMID:31724722
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. PMID:31701143
CRUP: a comprehensive framework to predict condition-specific regulatory units. PMID:31699133
Molecular and Functional Characterization of the Somatic PIWIL1/piRNA Pathway in Colorectal Cancer Cells. PMID:31694219
Potential risks and solutions for sharing genome summary data from African populations. PMID:31684976
Two Distinct Subtypes Revealed in Blood Transcriptome of Breast Cancer Patients With an Unsupervised Analysis. PMID:31632916
Linkage disequilibrium maps for European and African populations constructed from whole genome sequence data. PMID:31624256
GWAS Central: a comprehensive resource for the discovery and comparison of genotype and phenotype data from genome-wide association studies. PMID:31612961
Bringing radiomics into a multi-omics framework for a comprehensive genotype-phenotype characterization of oncological diseases. PMID:31590671
AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text literature. PMID:31467448
Leveraging European infrastructures to access 1 million human genomes by 2022. PMID:31455890
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
GRAF-pop: A Fast Distance-Based Method To Infer Subject Ancestry from Multiple Genotype Datasets Without Principal Components Analysis. PMID:31151998
Sex-Interacting mRNA- and miRNA-eQTLs and Their Implications in Gene Expression Regulation and Disease. PMID:31024623
On the differences between mega- and meta-imputation and analysis exemplified on the genetics of age-related macular degeneration. PMID:31016765
Making Sense of the Epigenome Using Data Integration Approaches. PMID:30837884
Time to Treatment Prediction in Chronic Lymphocytic Leukemia Based on New Transcriptional Patterns. PMID:30828568
A New Panel-Based Next-Generation Sequencing Method for ADME Genes Reveals Novel Associations of Common and Rare Variants With Expression in a Human Liver Cohort. PMID:30766545
Use case driven evaluation of open databases for pediatric cancer research. PMID:30675185
A Random Walk Based Cluster Ensemble Approach for Data Integration and Cancer Subtyping. PMID:30669418
Molecular profiling of longitudinally observed small colorectal polyps: A cohort study. PMID:30555044
Data Resource Profile: Cardiovascular H3Africa Innovation Resource (CHAIR). PMID:30535409
PhenoMeNal: processing and analysis of metabolomics data in the cloud. PMID:30535405
PDX Finder: A portal for patient-derived tumor xenograft model discovery. PMID:30535239
A Primer on Data Analytics in Functional Genomics: How to Move from Data to Insight? PMID:30522862
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657
BioSamples database: an updated sample metadata hub. PMID:30407529
The European Nucleotide Archive in 2018. PMID:30395270
Disease networks identify specific conditions and pleiotropy influencing multimorbidity in the general population. PMID:30374096
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data. PMID:30357349
A One-Penny Imputed Genome from Next-Generation Reference Panels. PMID:30100085
Registered access: authorizing data access. PMID:30069064
Phrank measures phenotype sets similarity to greatly improve Mendelian diagnostic disease prioritization. PMID:29997393
A System-wide Approach to Monitor Responses to Synergistic BRAF and EGFR Inhibition in Colorectal Cancer Cells. PMID:29970458
Novel LRBA Mutation and Possible Germinal Mosaicism in a Slavic Family. PMID:29804237
The FAIR guiding principles for data stewardship: fair enough? PMID:29777206
Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma. PMID:29760388
HLA and proteasome expression body map. PMID:29587858
Ten steps to get started in Genome Assembly and Annotation. PMID:29568489
A FAIR guide for data providers to maximise sharing of human genomic data. PMID:29543799
Association of miR-548c-5p, miR-7-5p, miR-210-3p, miR-128-3p with recurrence in systemically untreated breast cancer. PMID:29507672
A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it. PMID:29479297
Toward a Tiered Model to Share Clinical Trial Data and Samples in Precision Oncology. PMID:29435448
Genome-wide oxidative bisulfite sequencing identifies sex-specific methylation differences in the human placenta. PMID:29376485
Moving towards a molecular taxonomy of autoimmune rheumatic diseases. PMID:29362467
Making new genetic diagnoses with old data: iterative reanalysis and reporting from genome-wide data in 1,133 families with developmental disorders. PMID:29323667
Balancing the local and the universal in maintaining ethical access to a genomics biobank. PMID:29282045
Improving average ranking precision in user searches for biomedical research datasets. PMID:29220475
The international nucleotide sequence database collaboration. PMID:29190397
The European Bioinformatics Institute in 2017: data coordination and integration. PMID:29186510
Translational bioinformatics in mental health: open access data sources and computational biomarker discovery. PMID:29186302
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data. PMID:29123641
DNA Data Bank of Japan: 30th anniversary. PMID:29040613
'Multi-omic' data analysis using O-miner. PMID:28981577
HUMA: A platform for the analysis of genetic variation in humans. PMID:28967693
Interactions between the tumor and the blood systemic response of breast cancer patients. PMID:28957325
Integrative whole-genome sequence analysis reveals roles of regulatory mutations in BCL6 and BCL2 in follicular lymphoma. PMID:28765546
HLA-check: evaluating HLA data from SNP information. PMID:28697761
Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution. PMID:28445469
Orchestrating differential data access for translational research: a pilot implementation. PMID:28330491
BCIP: a gene-centered platform for identifying potential regulatory genes in breast cancer. PMID:28327601
Returning genome sequences to research participants: Policy and practice. PMID:28317033
Development of Bioinformatics Infrastructure for Genomics Research. PMID:28302555
Role of Structural Bioinformatics in Drug Discovery by Computational SNP Analysis: Analyzing Variation at the Protein Level. PMID:28302551
Integrin-β4 identifies cancer stem cell-enriched populations of partially mesenchymal carcinoma cells. PMID:28270621
Integration of EGA secure data access into Galaxy. PMID:28232859
DNA Data Bank of Japan. PMID:27924010
Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource. PMID:27903883
The human-induced pluripotent stem cell initiative-data resources for cellular genetics. PMID:27733501
Registered access: a 'Triple-A' approach. PMID:27677416
Who should have access to genomic data and how should they be held accountable? Perspectives of Data Access Committee members and experts. PMID:27552966
The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report. PMID:27255532
Identifying significant microRNA-mRNA pairs associated with breast cancer subtypes. PMID:27245063
Limb-girdle muscular dystrophies - international collaborations for translational research. PMID:27033376
Modeling the integration of bacterial rRNA fragments into the human cancer genome. PMID:27001685
Consent Codes: Upholding Standard Data Use Conditions. PMID:26796797
"You want the right amount of oversight": interviews with data access committee members and experts on genomic data access. PMID:26795589
Genotype Imputation with Millions of Reference Samples. PMID:26748515
Controlled Access under Review: Improving the Governance of Genomic Data Access. PMID:26720729
DNA data bank of Japan (DDBJ) progress report. PMID:26578571
Human genotype-phenotype databases: aims, challenges and opportunities. PMID:26553330
Focusing on rare diseases in China: are we there yet? PMID:26525984
Big Data: the challenge for small research groups in the era of cancer genomics. PMID:26492224
Public data and open source tools for multi-assay genomic investigation of disease. PMID:26463000
Genome-driven integrated classification of breast cancer validated in over 7,500 samples. PMID:25164602
Diverse modes of genomic alteration in hepatocellular carcinoma. PMID:25159915
Data sharing policy design for consortia: challenges for sustainability. PMID:24475754
Regulation of mRNA expression in breast cancer - a cis-tematic trans-action. PMID:23106814
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. PMID:22152084
Developing and implementing an institute-wide data sharing policy. PMID:21955348
Subtype specific genetic associations for juvenile idiopathic arthritis: ERAP1 with the enthesitis related arthritis subtype and IL23R with juvenile psoriatic arthritis. PMID:21281511
Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors. PMID:20696054
Ensembl variation resources. PMID:20459805 - http://dx.doi.org/10.1038/ng.3312
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cancer
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genotype
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
microarray experiment
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rare disease
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
whole genome sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
bioinformatics
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
biomedical research projects
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
clinical studies
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
laboratory information management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
data security
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
data integration and warehousing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
rare diseases
metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:43.371341
Tags
More detailed information about this field from each metasource.
cancer
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genotype
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
microarray experiment
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rare disease
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
whole genome sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: EGA; The European Genome-phenome Archive; DOI: https://doi.org/10.25504/FAIRsharing.mya1ff; Last edited: May 7, 2021, 3:36 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
bioinformatics
metasource: re3data.orgversion: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
biomedical research projects
metasource: re3data.orgversion: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
clinical studies
metasource: re3data.orgversion: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: The European Genome-phenome Archive; editing status 2022-03-30; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W619 last accessed: 2022-11-04
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
laboratory information management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
data security
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
data integration and warehousing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
rare diseases
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:30:43.371341
cancer dna sequences polymorphism genome genotype microarray experiment phenotype rna sequence rare disease whole genome sequencing bioinformatics biomedical research projects clinical studies genomics genotype and phenotype laboratory information management data security data integration and warehousing rare diseases
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