BTO

The BRENDA Tissue Ontology (BTO)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

bto
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

Other names: BTO, BRENDA Tissue and Enzyme Source Ontology, The BRENDA Tissue Ontology (BTO), bto

A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.

Webpage:

http://www.brenda-enzymes.info

Licence:

Name: License agreement for users of BRENDA
URL: https://www.brenda-enzymes.info/copy.php

Publications: (6)

Publications
More detailed information about this field from each metasource.

BRENDA, the enzyme database: updates and major new developments
PMID: 14681450
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA
PMID: 23203881
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

BRENDA in 2019: a European ELIXIR core data resource
PMID: 30395242
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

BRENDA in 2015: exciting developments in its 25th year of existence
PMID: 25378310
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources
PMID: 21030441
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

http://dx.doi.org/10.1093/nar/gkq968
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

BRENDA, the enzyme database: updates and major new developments PubMed citations: 224.

224 articles citing: BRENDA, the enzyme database: updates and major new developments

Does adding the drug-drug similarity to drug-target interaction prediction methods make a noticeable improvement in their efficiency? PMID:35836119
Structural Thermokinetic Modelling. PMID:35629936
RoFDT: Identification of Drug-Target Interactions from Protein Sequence and Drug Molecular Structure Using Rotation Forest. PMID:35625469
MSPEDTI: Prediction of Drug-Target Interactions via Molecular Structure with Protein Evolutionary Information. PMID:35625468
A Genome-Scale Metabolic Model of Methanoperedens nitroreducens: Assessing Bioenergetics and Thermodynamic Feasibility. PMID:35448501
Machine learning modeling of family wide enzyme-substrate specificity screens. PMID:35143485
Draft Genome Sequence of Oceanobacillus jordanicus Strain GSFE11, a Halotolerant Plant Growth-Promoting Bacterial Endophyte Isolated From the Jordan Valley. PMID:35095268
The Discovery of New Drug-Target Interactions for Breast Cancer Treatment. PMID:34946556
Draft Genome Sequence of Bacillus pacificus KVCMST-8A-12, Isolated from a Marine Sediment Sample from the Kanyakumari Coast, India. PMID:34913714
NeuRank: learning to rank with neural networks for drug-target interaction prediction. PMID:34836495
Model Balancing: A Search for In-Vivo Kinetic Constants and Consistent Metabolic States. PMID:34822407
A unified drug-target interaction prediction framework based on knowledge graph and recommendation system. PMID:34811351
Whole genome sequence data of Chromobacterium violaceum WCH4, a human pathogenic strain from Sabah, Malaysia. PMID:34805463
Drug-target interaction prediction using unifying of graph regularized nuclear norm with bilinear factorization. PMID:34789169
DeepStack-DTIs: Predicting Drug-Target Interactions Using LightGBM Feature Selection and Deep-Stacked Ensemble Classifier. PMID:34731411
Graph representation learning for structural proteomics. PMID:34665257
Hierarchical Pooling in Graph Neural Networks to Enhance Classification Performance in Large Datasets. PMID:34577277
DTi2Vec: Drug-target interaction prediction using network embedding and ensemble learning. PMID:34551818
Prediction of Drug-Target Interactions by Combining Dual-Tree Complex Wavelet Transform with Ensemble Learning Method. PMID:34500792
Multimorbidity prediction using link prediction. PMID:34385524
Predicting Drug-Target Interactions Based on the Ensemble Models of Multiple Feature Pairs. PMID:34202954
Secretome Analysis of Arabidopsis-Trichoderma atroviride Interaction Unveils New Roles for the Plant Glutamate:Glyoxylate Aminotransferase GGAT1 in Plant Growth Induced by the Fungus and Resistance against Botrytis cinerea. PMID:34202732
An Ensemble Learning-Based Method for Inferring Drug-Target Interactions Combining Protein Sequences and Drug Fingerprints. PMID:33987446
HCGA: Highly comparative graph analysis for network phenotyping. PMID:33982022
Predicted Metabolic Function of the Gut Microbiota of Drosophila melanogaster. PMID:33947801
Genome and Pangenome Analysis of Lactobacillus hilgardii FLUB-A New Strain Isolated from Mead. PMID:33917427
Drug-Target Interaction Prediction via Dual Laplacian Graph Regularized Logistic Matrix Factorization. PMID:33855072
A review on compound-protein interaction prediction methods: Data, format, representation and model. PMID:33841755
PreDTIs: prediction of drug-target interactions based on multiple feature information using gradient boosting framework with data balancing and feature selection techniques. PMID:33709119
Molecular basis for protein-protein interactions. PMID:33488826
Personalized Genome-Scale Metabolic Models Identify Targets of Redox Metabolism in Radiation-Resistant Tumors. PMID:33476554
An efficient computational method for predicting drug-target interactions using weighted extreme learning machine and speed up robot features. PMID:33472664
A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions. PMID:33431024
Ensemble Learning Prediction of Drug-Target Interactions Using GIST Descriptor Extracted from PSSM-Based Evolutionary Information. PMID:32908888
Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers. PMID:32873645
Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4. PMID:32804944
Drug-target interactions prediction using marginalized denoising model on heterogeneous networks. PMID:32703151
Impact of Facultative Bacteria on the Metabolic Function of an Obligate Insect-Bacterial Symbiosis. PMID:32665268
Transcriptional Sequencing and Gene Expression Analysis of Various Genes in Fruit Development of Three Different Black Pepper (Piper nigrum L.) Varieties. PMID:32399475
Gene-Wise Burden of Coding Variants Correlates to Noncoding Pharmacogenetic Risk Variants. PMID:32349395
Genome-Scale Investigation of the Metabolic Determinants Generating Bacterial Fastidious Growth. PMID:32234775
In silico Metabolic Pathway Analysis Identifying Target Against Leishmaniasis - A Kinetic Modeling Approach. PMID:32211028
FRnet-DTI: Deep convolutional neural network for drug-target interaction prediction. PMID:32154410
A Multi-Task Representation Learning Architecture for Enhanced Graph Classification. PMID:31998065
Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. PMID:31950972
Drug-target interaction prediction using Multi Graph Regularized Nuclear Norm Minimization. PMID:31945078
Whole Genome Sequencing and Comparative Genomics of Two Nematicidal Bacillus Strains Reveals a Wide Range of Possible Virulence Factors. PMID:31919110
Comparative analysis of differential proteome-wide protein-protein interaction network of Methanobrevibacter ruminantium M1. PMID:31763465
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation. PMID:31685817
Dual pathway for metabolic engineering of Escherichia coli to produce the highly valuable hydroxytyrosol. PMID:31682615
Comparative Genomics Reveals a Well-Conserved Intrinsic Resistome in the Emerging Multidrug-Resistant Pathogen Cupriavidus gilardii. PMID:31578249
Draft Genome Sequence of a Chryseobacterium indologenes Strain Isolated from a Blood Culture of a Hospitalized Child in Antananarivo, Madagascar. PMID:31467100
Drug-Target Interaction Prediction Based on Drug Fingerprint Information and Protein Sequence. PMID:31430892
Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers. PMID:31221760
NRLMFβ: Beta-distribution-rescored neighborhood regularized logistic matrix factorization for improving the performance of drug-target interaction prediction. PMID:30793050
Drug-Target Interaction Prediction via Dual Laplacian Graph Regularized Matrix Completion. PMID:30627536
Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains. PMID:30626384
BRENDA in 2019: a European ELIXIR core data resource. PMID:30395242
A new chemoinformatics approach with improved strategies for effective predictions of potential drugs. PMID:30311095
FLIM-MAP: Gene Context Based Identification of Functional Modules in Bacterial Metabolic Pathways. PMID:30283416
Integrated human-virus metabolic stoichiometric modelling predicts host-based antiviral targets against Chikungunya, Dengue and Zika viruses. PMID:30209043
A Review of Dynamic Modeling Approaches and Their Application in Computational Strain Optimization for Metabolic Engineering. PMID:30108559
Characterization of esterase activity from an Acetomicrobium hydrogeniformans enzyme with high structural stability in extreme conditions. PMID:30014242
DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems. PMID:29914475
A physical model of cell metabolism. PMID:29844352
Selenium-Dependent Antioxidant Enzymes: Actions and Properties of Selenoproteins. PMID:29758013
An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanisms of Flood Tolerance in Soybeans. PMID:29701710
Structural and functional characterization of the Vindoline biosynthesis pathway enzymes of Catharanthus roseus. PMID:29442186
Open-source chemogenomic data-driven algorithms for predicting drug-target interactions. PMID:29420684
Structure-guided design of Serratia marcescens short-chain dehydrogenase/reductase for stereoselective synthesis of (R)-phenylephrine. PMID:29396495
iDTI-ESBoost: Identification of Drug Target Interaction Using Evolutionary and Structural Features with Boosting. PMID:29255285
Reconstruction of Oryza sativa indica Genome Scale Metabolic Model and Its Responses to Varying RuBisCO Activity, Light Intensity, and Enzymatic Cost Conditions. PMID:29250098
Drug-Target Interaction Prediction through Label Propagation with Linear Neighborhood Information. PMID:29186828
DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches. PMID:29186331
Genome-scale modeling and transcriptome analysis of Leuconostoc mesenteroides unravel the redox governed metabolic states in obligate heterofermentative lactic acid bacteria. PMID:29147021
Metabolomic Modularity Analysis (MMA) to Quantify Human Liver Perfusion Dynamics. PMID:29137180
In silico prediction of drug-target interaction networks based on drug chemical structure and protein sequences. PMID:28894115
Aspergillus niger Secretes Citrate to Increase Iron Bioavailability. PMID:28824560
Genome-Scale Modeling of NADPH-Driven β-Lapachone Sensitization in Head and Neck Squamous Cell Carcinoma. PMID:28762750
Prediction of Drug-Target Interaction Networks from the Integration of Protein Sequences and Drug Chemical Structures. PMID:28678206
Detecting similar binding pockets to enable systems polypharmacology. PMID:28662117
Drug repositioning for enzyme modulator based on human metabolite-likeness. PMID:28617219
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities. PMID:28531184
Pioneering topological methods for network-based drug-target prediction by exploiting a brain-network self-organization theory. PMID:28453640
Cooperative Metabolism in a Three-Partner Insect-Bacterial Symbiosis Revealed by Metabolic Modeling. PMID:28348026
SELF-BLM: Prediction of drug-target interactions via self-training SVM. PMID:28192537
Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points. PMID:28169831
Predicting drug-target interactions by dual-network integrated logistic matrix factorization. PMID:28079135
Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases. PMID:27991516
Community metabolic modeling approaches to understanding the gut microbiome: Bridging biochemistry and ecology. PMID:27989793
EstDZ3: A New Esterolytic Enzyme Exhibiting Remarkable Thermostability. PMID:27899916
The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization. PMID:27812109
Loss of variation of state detected in soybean metabolic and human myelomonocytic leukaemia cell transcriptional networks under external stimuli. PMID:27775018
In Vivo Analysis of NH4+ Transport and Central Nitrogen Metabolism in Saccharomyces cerevisiae during Aerobic Nitrogen-Limited Growth. PMID:27637876
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition. PMID:27613112
The Need for Integrated Approaches in Metabolic Engineering. PMID:27527588
Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity. PMID:27272929
Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 β-glucosidase from Exiguobacterium antarcticum B7. PMID:27029646
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction. PMID:26987649
DASPfind: new efficient method to predict drug-target interactions. PMID:26985240
Systems biology of the structural proteome. PMID:26969117
Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements. PMID:26951675
Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction. PMID:26872142
Improved prediction of drug-target interactions using regularized least squares integrating with kernel fusion technique. PMID:26851083
A multiple kernel learning algorithm for drug-target interaction prediction. PMID:26801218
A Glimpse to Background and Characteristics of Major Molecular Biological Networks. PMID:26491677
Revisiting the chlorophyll biosynthesis pathway using genome scale metabolic model of Oryza sativa japonica. PMID:26443104
The Augmenting Effects of Desolvation and Conformational Energy Terms on the Predictions of Docking Programs against mPGES-1. PMID:26305898
Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula. PMID:26285202
PINGU: PredIction of eNzyme catalytic residues usinG seqUence information. PMID:26261982
Deciding when to stop: efficient experimentation to learn to predict drug-target interactions. PMID:26153434
Cooperative Electrostatic Interactions Drive Functional Evolution in the Alkaline Phosphatase Superfamily. PMID:26091851
HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA. PMID:25937701
Determining similarity of scientific entities in annotation datasets. PMID:25725057
Genome-scale modeling for metabolic engineering. PMID:25578304
Predictive sulfur metabolism - a field in flux. PMID:25477892
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. PMID:25300491
Multi-tissue computational modeling analyzes pathophysiology of type 2 diabetes in MKR mice. PMID:25029527
Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model. PMID:24565082
Drug repositioning by kernel-based integration of molecular structure, molecular activity, and phenotype data. PMID:24244318
Manipulating the sleeping beauty mutase operon for the production of 1-propanol in engineered Escherichia coli. PMID:24074355
Protonation and pK changes in protein-ligand binding. PMID:23889892
Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile. PMID:23840562
Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism. PMID:23372424
Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis. PMID:23088596
Erythrocytic stage-dependent regulation of oligomerization of Plasmodium ribosomal protein P2. PMID:23060439
Shrinking the metabolic solution space using experimental datasets. PMID:22956899
MuteinDB: the mutein database linking substrates, products and enzymatic reactions directly with genetic variants of enzymes. PMID:22730453
Analyzing large biological datasets with association networks. PMID:22638576
Prediction of drug-target interactions and drug repositioning via network-based inference. PMID:22589709
High similarity of phylogenetic profiles of rate-limiting enzymes with inhibitory relation in Human, Mouse, Rat, budding Yeast and E. coli. PMID:22369203
In silico insights into the symbiotic nitrogen fixation in Sinorhizobium meliloti via metabolic reconstruction. PMID:22319621
Bioinformatic Analysis of Leishmania donovani Long-Chain Fatty Acid-CoA Ligase as a Novel Drug Target. PMID:22091399
Bioinformatics and systems biology of the lipidome. PMID:21939287
Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis. PMID:21625579
Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction. PMID:21609491
Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis. PMID:21605342
Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization. PMID:21572178
Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect. PMID:21423717
Bacterial protein structures reveal phylum dependent divergence. PMID:21315656
Searching the protein structure database for ligand-binding site similarities using CPASS v.2. PMID:21269480
Parameter balancing in kinetic models of cell metabolism. PMID:21038890
The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources. PMID:21030441
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation. PMID:20961407
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development. PMID:20860850
Computational systems chemical biology. PMID:20838980
KID--an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information of enzymes. PMID:20626859
Characterization of growth and metabolism of the haloalkaliphile Natronomonas pharaonis. PMID:20543878
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. PMID:20529913
Metabolic pathway relationships revealed by an integrative analysis of the transcriptional and metabolic temperature stress-response dynamics in yeast. PMID:20455750
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. PMID:20426874
Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds. PMID:20406431
The smallest chemical reaction system with bistability. PMID:19737387
Development and validation of a species-independent functional gene microarray that targets lactic acid bacteria. PMID:19684161
Supervised prediction of drug-target interactions using bipartite local models. PMID:19605421
A mathematical model to derive N-glycan structures and cellular enzyme activities from mass spectrometric data. PMID:19506293
Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli. PMID:19492041
An integrated model of eicosanoid metabolism and signaling based on lipidomics flux analysis. PMID:19486676
MirZ: an integrated microRNA expression atlas and target prediction resource. PMID:19468042
A theoretical model for template-free synthesis of long DNA sequence. PMID:19343541
Recent developments in parameter estimation and structure identification of biochemical and genomic systems. PMID:19327372
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies. PMID:19144170
Questioning the ubiquity of neofunctionalization. PMID:19119408
Reconstruction of biochemical networks in microorganisms. PMID:19116616
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. PMID:18984617
ExplorEnz: the primary source of the IUBMB enzyme list. PMID:18776214
Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis. PMID:18767192
Histoplasma capsulatum secreted gamma-glutamyltransferase reduces iron by generating an efficient ferric reductant. PMID:18761625
Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains. PMID:18757736
Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies. PMID:18670595
Metabolic network fluxes in heterotrophic Arabidopsis cells: stability of the flux distribution under different oxygenation conditions. PMID:18667721
Metal ions in biological catalysis: from enzyme databases to general principles. PMID:18604568
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. PMID:18586719
Phototroph genomics ten years on. PMID:18568416
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm. PMID:18559112
Blast2GO: A comprehensive suite for functional analysis in plant genomics. PMID:18483572
SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks. PMID:18447902
Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics. PMID:18419817
Extremely thermostable esterases from the thermoacidophilic euryarchaeon Picrophilus torridus. PMID:18330499
Replacement of the arginine biosynthesis operon in Xanthomonadales by lateral gene transfer. PMID:18305979
Prediction of enzymes and non-enzymes from protein sequences based on sequence derived features and PSSM matrix using artificial neural network. PMID:18288334
Thiamine biosynthesis in algae is regulated by riboswitches. PMID:18093957
Quantitative systems-level determinants of human genes targeted by successful drugs. PMID:18083776
PRIDE: new developments and new datasets. PMID:18033805
A fault model for ontology mapping, alignment, and linking systems. PMID:17990495
Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE. PMID:17956990
Visualizing regulatory interactions in metabolic networks. PMID:17939866
qPIPSA: relating enzymatic kinetic parameters and interaction fields. PMID:17919319
PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. PMID:17916232
ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature. PMID:17662133
Applying negative rule mining to improve genome annotation. PMID:17659089
Systems chemical biology. PMID:17637771
Integrative content-driven concepts for bioinformatics "beyond the cell". PMID:17426389
METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks. PMID:17408512
Regulation of metabolic networks by small molecule metabolites. PMID:17352833
A network perspective on the evolution of metabolism by gene duplication. PMID:17326820
Global reconstruction of the human metabolic network based on genomic and bibliomic data. PMID:17267599
SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas. PMID:17202169
BRENDA, AMENDA and FRENDA: the enzyme information system in 2007. PMID:17202167
Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data. PMID:17173670
Bringing metabolic networks to life: convenience rate law and thermodynamic constraints. PMID:17173669
PduL is an evolutionarily distinct phosphotransacylase involved in B12-dependent 1,2-propanediol degradation by Salmonella enterica serovar typhimurium LT2. PMID:17158662
Correcting ligands, metabolites, and pathways. PMID:17132165
Parameter estimate of signal transduction pathways. PMID:17118160
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. PMID:17094225
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. PMID:17082206
Meta-All: a system for managing metabolic pathway information. PMID:17059592
ORENZA: a web resource for studying ORphan ENZyme activities. PMID:17026747
ProSAT2--Protein Structure Annotation Server. PMID:16845114
Accelerating the reconstruction of genome-scale metabolic networks. PMID:16772023
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. PMID:16672622
Predicting genes for orphan metabolic activities using phylogenetic profiles. PMID:16507154
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. PMID:16397293
EndoNet: an information resource about endocrine networks. PMID:16381928
MODOMICS: a database of RNA modification pathways. PMID:16381833
EHPred: an SVM-based method for epoxide hydrolases recognition and classification. PMID:16365918
Structural characterization of glucooligosaccharide oxidase from Acremonium strictum. PMID:16332885
In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments. PMID:16269766
MACiE: a database of enzyme reaction mechanisms. PMID:16188925
metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella. PMID:15745999
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs. PMID:15608254
IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence. PMID:15312235
Retrieving sequences of enzymes experimentally characterized but erroneously annotated : the case of the putrescine carbamoyltransferase. PMID:15287962
Potential use of sugar binding proteins in reactors for regeneration of CO2 fixation acceptor D-Ribulose-1,5-bisphosphate. PMID:15175111
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA PubMed citations: 146.

146 articles citing: BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA

Highly sensitive, scalable, and rapid SARS-CoV-2 biosensor based on In2O3 nanoribbon transistors and phosphatase. PMID:35371413
Understanding and mathematical modelling of cellular resource allocation in microorganisms: a comparative synthesis. PMID:34583645
Metabolome and proteome analyses reveal transcriptional misregulation in glycolysis of engineered E. coli. PMID:34389727
Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations. PMID:34297714
The LASER database: Formalizing design rules for metabolic engineering. PMID:34150506
The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli. PMID:33743594
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. PMID:33211880
Multiplex enzyme activity imaging by MALDI-IMS of substrate library conversions. PMID:32968143
Engineering of Nanoscale Coordination Polymers with Biomolecules for Advanced Applications. PMID:32863398
ENaC regulation by phospholipids and DGK explained through mathematical modeling. PMID:32811866
DNA-Scaffolded Proximity Assembly and Confinement of Multienzyme Reactions. PMID:32248317
Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies. PMID:32140178
Complex I is bypassed during high intensity exercise. PMID:31699973
Engineering a Seven Enzyme Biotransformation using Mathematical Modelling and Characterized Enzyme Parts. PMID:31598184
A Pilot STEM Curriculum Designed to Teach High School Students Concepts in Biochemical Engineering and Pharmacology. PMID:31517314
Uncertainty reduction in biochemical kinetic models: Enforcing desired model properties. PMID:31430276
Identification of small molecule enzyme inhibitors as broad-spectrum anthelmintics. PMID:31235822
Kinetic modeling of Stickland reactions-coupled methanogenesis for a methanogenic culture. PMID:31183623
Nanoparticle Activation Methods in Cancer Treatment. PMID:31137744
Tunable enzyme responses in amphiphilic nanoassemblies through alterations in the unimer-aggregate equilibrium. PMID:30996882
Stochastic modelling reveals mechanisms of metabolic heterogeneity. PMID:30911683
Allosteric Feedback Inhibition Enables Robust Amino Acid Biosynthesis in E. coli by Enforcing Enzyme Overabundance. PMID:30638812
In silico engineering of Pseudomonas metabolism reveals new biomarkers for increased biosurfactant production. PMID:30588397
Theranostics based on AIEgens. PMID:30429878
BRENDA in 2019: a European ELIXIR core data resource. PMID:30395242
Promising New Antifungal Treatment Targeting Chorismate Synthase from Paracoccidioides brasiliensis. PMID:30348661
Plasmon-Enhanced Single-Molecule Enzymology. PMID:30148184
Membrane-associated human tyrosinase is an enzymatically active monomeric glycoprotein. PMID:29870551
A chitinase with two catalytic domains is required for organization of the cuticular extracellular matrix of a beetle. PMID:29590098
Label-free protein detection using terahertz time-domain spectroscopy. PMID:29541499
From correlation to causation: analysis of metabolomics data using systems biology approaches. PMID:29503602
A Mathematical Model of the Phosphoinositide Pathway. PMID:29500467
Pathway design using de novo steps through uncharted biochemical spaces. PMID:29330441
Redox status of patients before cardiac surgery. PMID:29257712
On the Early Evolution of Catabolic Pathways: A Comparative Genomics Approach. I. The Cases of Glucose, Ribose, and the Nucleobases Catabolic Routes. PMID:29189888
Isolation of highly thermostable β-xylosidases from a hot spring soil microbial community using a metagenomic approach. PMID:29106502
Predicting novel substrates for enzymes with minimal experimental effort with active learning. PMID:29030274
VB-MK-LMF: fusion of drugs, targets and interactions using variational Bayesian multiple kernel logistic matrix factorization. PMID:28978313
Construction and Experimental Validation of a Quantitative Kinetic Model of Nitric Oxide Stress in Enterohemorrhagic Escherichia coli O157:H7. PMID:28952571
A Protocol for Generating and Exchanging (Genome-Scale) Metabolic Resource Allocation Models. PMID:28878200
Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition. PMID:28821741
An Ameliorated Prediction of Drug-Target Interactions Based on Multi-Scale Discrete Wavelet Transform and Network Features. PMID:28813000
Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints. PMID:28779005
Exploring general-purpose protein features for distinguishing enzymes and non-enzymes within the twilight zone. PMID:28732462
Detection of Enzyme Activity and Inhibition during Studies in Solution, In Vitro and In Vivo with CatalyCEST MRI. PMID:28726131
Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth. PMID:28720699
The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. PMID:28691704
A practical strategy to design and develop an isoform-specific fluorescent probe for a target enzyme: CYP1A1 as a case study. PMID:28553516
Unfair competition governs the interaction of pCPI-17 with myosin phosphatase (PP1-MYPT1). PMID:28387646
Cancer-Associated, Stimuli-Driven, Turn on Theranostics for Multimodality Imaging and Therapy. PMID:28370546
Genomics of apicomplexan parasites. PMID:28276701
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants. PMID:28228535
Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism. PMID:28125959
Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats. PMID:28106881
A genome-scale Escherichia coli kinetic metabolic model k-ecoli457 satisfying flux data for multiple mutant strains. PMID:27996047
BRENDA in 2017: new perspectives and new tools in BRENDA. PMID:27924025
Ion Channel ElectroPhysiology Ontology (ICEPO) - a case study of text mining assisted ontology development. PMID:27570648
Constrained Allocation Flux Balance Analysis. PMID:27355325
Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy. PMID:27336167
The Proteome and Lipidome of Thermococcus kodakarensis across the Stationary Phase. PMID:27274708
Metabolite concentrations, fluxes and free energies imply efficient enzyme usage. PMID:27159581
Evolutionary evidence on suitability of SecD as a target for development of antibacterial agents against Staphylococcus aureus. PMID:27087922
Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase. PMID:26928598
Characterising Complex Enzyme Reaction Data. PMID:26840640
Benchmarking Procedures for High-Throughput Context Specific Reconstruction Algorithms. PMID:26834640
Integration and Validation of the Genome-Scale Metabolic Models of Pichia pastoris: A Comprehensive Update of Protein Glycosylation Pathways, Lipid and Energy Metabolism. PMID:26812499
Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans. PMID:26776497
Analysis on evolutionary relationship of amylases from archaea, bacteria and eukaryota. PMID:26745984
Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond. PMID:26615025
Resource constrained flux balance analysis predicts selective pressure on the global structure of metabolic networks. PMID:26597226
An assessment of catalytic residue 3D ensembles for the prediction of enzyme function. PMID:26538500
Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae). PMID:26442024
A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data. PMID:26381164
The identification and characteristics of salinity-related microRNAs in gills of Portunus trituberculatus. PMID:26373863
Different combinations of atomic interactions predict protein-small molecule and protein-DNA/RNA affinities with similar accuracy. PMID:26370248
Dissecting Leishmania infantum Energy Metabolism - A Systems Perspective. PMID:26367006
Human metabolic atlas: an online resource for human metabolism. PMID:26209309
Comprehensive comparison of large-scale tissue expression datasets. PMID:26157623
Many InChIs and quite some feat. PMID:26081259
Ancient Systems of Sodium/Potassium Homeostasis as Predecessors of Membrane Bioenergetics. PMID:26071768
Direct Ionic Regulation of the Activity of Myo-Inositol Biosynthesis Enzymes in Mozambique Tilapia. PMID:26066044
Metabolic energy-based modelling explains product yielding in anaerobic mixed culture fermentations. PMID:25992959
Est10: A Novel Alkaline Esterase Isolated from Bovine Rumen Belonging to the New Family XV of Lipolytic Enzymes. PMID:25973851
A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines. PMID:25960936
Structure and mechanism of an antibiotics-synthesizing 3-hydroxykynurenine C-methyltransferase. PMID:25960001
Highly Active and Specific Tyrosine Ammonia-Lyases from Diverse Origins Enable Enhanced Production of Aromatic Compounds in Bacteria and Saccharomyces cerevisiae. PMID:25911487
Annotation-based feature extraction from sets of SBML models. PMID:25904997
Predicting internal cell fluxes at sub-optimal growth. PMID:25890056
A method for multiplex gene synthesis employing error correction based on expression. PMID:25790188
Computational modeling of drug response with applications to neuroscience. PMID:25733952
Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis. PMID:25566296
Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer. PMID:25555398
Synthetic biology outside the cell: linking computational tools to cell-free systems. PMID:25538941
Synthetic Biology: A Bridge between Artificial and Natural Cells. PMID:25532531
A substrate ambiguous enzyme facilitates genome reduction in an intracellular symbiont. PMID:25527092
The glutaredoxin mono- and di-thiol mechanisms for deglutathionylation are functionally equivalent: implications for redox systems biology. PMID:25514238
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently. PMID:25503938
Development of bio-based fine chemical production through synthetic bioengineering. PMID:25494636
Computational strategies for a system-level understanding of metabolism. PMID:25427076
Text mining in cancer gene and pathway prioritization. PMID:25392685
MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae. PMID:25378328
BRENDA in 2015: exciting developments in its 25th year of existence. PMID:25378310
Emulating structural stability of Pseudomonas mendocina lipase: in silico mutagenesis and molecular dynamics studies. PMID:25367042
Intracellular metabolite levels shape sulfur isotope fractionation during microbial sulfate respiration. PMID:25362045
Computational approaches for microalgal biofuel optimization: a review. PMID:25309916
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. PMID:25300491
Enzyme clustering accelerates processing of intermediates through metabolic channeling. PMID:25262299
Targeting the C-type lectins-mediated host-pathogen interactions with dextran. PMID:25224349
Interactions of macromolecular crowding agents and cosolutes with small-molecule substrates: effect on horseradish peroxidase activity with two different substrates. PMID:25157999
Small but powerful, the primary endosymbiont of moss bugs, Candidatus Evansia muelleri, holds a reduced genome with large biosynthetic capabilities. PMID:25115011
Simulating metabolism with statistical thermodynamics. PMID:25089525
Data integration in the era of omics: current and future challenges. PMID:25032990
Multi-tissue computational modeling analyzes pathophysiology of type 2 diabetes in MKR mice. PMID:25029527
Leveraging structure for enzyme function prediction: methods, opportunities, and challenges. PMID:24998033
Expression and characterization of a β-fructofuranosidase from the parasitic protist Trichomonas vaginalis. PMID:24972630
Profiling the orphan enzymes. PMID:24906382
Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. PMID:24894045
High-throughput single-molecule studies of protein-DNA interactions. PMID:24859086
Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade. PMID:24858085
Finding sequences for over 270 orphan enzymes. PMID:24826896
An atlas of genetic influences on human blood metabolites. PMID:24816252
Optimizing genome-scale network reconstructions. PMID:24811519
Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production. PMID:24808102
XTMS: pathway design in an eXTended metabolic space. PMID:24792156
Mining a database of single amplified genomes from Red Sea brine pool extremophiles-improving reliability of gene function prediction using a profile and pattern matching algorithm (PPMA). PMID:24778629
Large-scale determination of sequence, structure, and function relationships in cytosolic glutathione transferases across the biosphere. PMID:24756107
Towards a computational model of a methane producing archaeum. PMID:24729742
Toward quantitative understanding on microbial community structure and functioning: a modeling-centered approach using degradation of marine oil spills as example. PMID:24723922
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. PMID:24723265
Towards an integrative model of C4 photosynthetic subtypes: insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species. PMID:24642845
Greatwall-phosphorylated Endosulfine is both an inhibitor and a substrate of PP2A-B55 heterotrimers. PMID:24618897
Analysis of anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism. PMID:24603481
The future of whole-cell modeling. PMID:24556244
Improvement of experimental testing and network training conditions with genome-wide microarrays for more accurate predictions of drug gene targets. PMID:24444313
Two promising alkaline β-glucosidases isolated by functional metagenomics from agricultural soil, including one showing high tolerance towards harsh detergents, oxidants and glucose. PMID:24414432
Albinism-causing mutations in recombinant human tyrosinase alter intrinsic enzymatic activity. PMID:24392141
The Structure-Function Linkage Database. PMID:24271399
UniCarbKB: building a knowledge platform for glycoproteomics. PMID:24234447
BacDive--the Bacterial Diversity Metadatabase. PMID:24214959
In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories. PMID:24059635
Association of elevated urinary concentration of renin-angiotensin system components and severe AKI. PMID:24009222
Robustly passivated, gold nanoaperture arrays for single-molecule fluorescence microscopy. PMID:23987563
Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration. PMID:23938102
Evolutionary diversification of the multimeric states of proteins. PMID:23836639
Catalytic site identification--a web server to identify catalytic site structural matches throughout PDB. PMID:23680785
Computational model for pathway reconstruction to unravel the evolutionary significance of melanin synthesis. PMID:23390353
BRENDA in 2019: a European ELIXIR core data resource PubMed citations: 125.

125 articles citing: BRENDA in 2019: a European ELIXIR core data resource

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0. PMID:35773252
Experimental and computational studies of cellulases as bioethanol enzymes. PMID:35730402
Enzymatic Photometric Assays for the Selective Detection of Halides. PMID:35687247
Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation. PMID:35546409
IMEx Databases: Displaying Molecular Interactions into a Single, Standards-Compliant Dataset. PMID:35507258
The Enzymatic Core of Scorpion Venoms. PMID:35448857
Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate. PMID:35418297
Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx. PMID:35322036
Mining the Flavoproteome of Brucella ovis, the Brucellosis Causing Agent in Ovis aries. PMID:35315701
Biological Nitrogen Removal Database: A Manually Curated Data Resource. PMID:35208885
MetAMDB: Metabolic Atom Mapping Database. PMID:35208198
Comparative Genomic Analysis Reveals Preserved Features in Organohalide-Respiring Sulfurospirillum Strains. PMID:35196120
Metabolomic and Transcriptional Profiling of Oleuropein Bioconversion into Hydroxytyrosol during Table Olive Fermentation by Lactiplantibacillus plantarum. PMID:35170988
16S rRNA Methyltransferases as Novel Drug Targets Against Tuberculosis. PMID:35112243
Bacterial low-abundant taxa are key determinants of a healthy airway metagenome in the early years of human life. PMID:35024091
Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. PMID:35003157
Worldwide Protein Data Bank (wwPDB): A virtual treasure for research in biotechnology. PMID:34908533
Biochemical Characterization of Recombinant Isocitrate Dehydrogenase and Its Putative Role in the Physiology of an Acidophilic Micrarchaeon. PMID:34835444
The IntAct database: efficient access to fine-grained molecular interaction data. PMID:34761267
Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis. PMID:34755100
Characterizing the breast cancer lipidome and its interaction with the tissue microbiota. PMID:34707244
Discovery of a Novel Glucuronan Lyase System in Trichoderma parareesei. PMID:34705548
On the optimality of the enzyme-substrate relationship in bacteria. PMID:34699521
AI delivers Michaelis constants as fuel for genome-scale metabolic models. PMID:34669692
Deep learning allows genome-scale prediction of Michaelis constants from structural features. PMID:34665809
NPCDR: natural product-based drug combination and its disease-specific molecular regulation. PMID:34664659
Enzyme engineering and in vivo testing of a formate reduction pathway. PMID:34651085
First-principles model of optimal translation factors stoichiometry. PMID:34590582
EHreact: Extended Hasse Diagrams for the Extraction and Scoring of Enzymatic Reaction Templates. PMID:34587449
Experimental and computational investigation of enzyme functional annotations uncovers misannotation in the EC 1.1.3.15 enzyme class. PMID:34555022
PncsHub: a platform for annotating and analyzing non-classically secreted proteins in Gram-positive bacteria. PMID:34551435
The Coevolution of RuBisCO, Photorespiration, and Carbon Concentrating Mechanisms in Higher Plants. PMID:34539685
Natural Syringyl Mediators Accelerate Laccase-Catalyzed β-O-4 Cleavage and Cα-Oxidation of a Guaiacyl Model Substrate via an Aggregation Mechanism. PMID:34514230
Thermodynamic and Kinetic Modeling of Co-utilization of Glucose and Xylose for 2,3-BDO Production by Zymomonas mobilis. PMID:34381766
An extended reconstruction of human gut microbiota metabolism of dietary compounds. PMID:34354065
Performance of Regression Models as a Function of Experiment Noise. PMID:34262264
Coupling proteomics and metabolomics for the unsupervised identification of protein-metabolite interactions in Chaetomium thermophilum. PMID:34242379
Review of Machine Learning Methods for the Prediction and Reconstruction of Metabolic Pathways. PMID:34222327
Hierarchical Harmonization of Atom-Resolved Metabolic Reactions across Metabolic Databases. PMID:34209357
UniBind: maps of high-confidence direct TF-DNA interactions across nine species. PMID:34174819
A system-oriented strategy to enhance electron production of Synechocystis sp. PCC6803 in bio-photovoltaic devices: experimental and modeling insights. PMID:34112928
Co-occurrence of enzyme domains guides the discovery of an oxazolone synthetase. PMID:34099916
Characteristics of a Cold-Adapted L-glutaminase with Potential Applications in the Food Industry. PMID:34085170
Propionate Fermentative Genes of the Gut Microbiome Decrease in Inflammatory Bowel Disease. PMID:34070019
Structure-based protein function prediction using graph convolutional networks. PMID:34039967
The quantitative metabolome is shaped by abiotic constraints. PMID:34039963
Structures and kinetics of Thermotoga maritima MetY reveal new insights into the predominant sulfurylation enzyme of bacterial methionine biosynthesis. PMID:34019879
Human and preclinical studies of the host-gut microbiome co-metabolite hippurate as a marker and mediator of metabolic health. PMID:33975870
Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources. PMID:33950392
Microbial and Genetic Resources for Cobalamin (Vitamin B12) Biosynthesis: From Ecosystems to Industrial Biotechnology. PMID:33926061
Addressing the Selectivity of Enzyme Biosensors: Solutions and Perspectives. PMID:33926034
Time-course analysis of Streptococcus sanguinis after manganese depletion reveals changes in glycolytic and nucleic acid metabolites. PMID:33893555
The BioCyc Metabolic Network Explorer. PMID:33882841
History and Future Perspectives on the Discipline of Quantitative Systems Pharmacology Modeling and Its Applications. PMID:33841175
Discovery of a natural cyan blue: A unique food-sourced anthocyanin could replace synthetic brilliant blue. PMID:33827818
Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments. PMID:33821549
Low Molecular Weight (poly)Phenol Metabolites Across the Blood-Brain Barrier: The Underexplored Journey. PMID:33782650
Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle. PMID:33748705
A computational workflow for the expansion of heterologous biosynthetic pathways to natural product derivatives. PMID:33741955
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models. PMID:33691770
Proteome Regulation Patterns Determine Escherichia coli Wild-Type and Mutant Phenotypes. PMID:33688016
A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli. PMID:33684125
Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus. PMID:33594000
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. PMID:33589928
Proposal of the Annotation of Phosphorylated Amino Acids and Peptides Using Biological and Chemical Codes. PMID:33573096
BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts. PMID:33552037
BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access. PMID:33539279
PhenoMapping: a protocol to map cellular phenotypes to metabolic bottlenecks, identify conditional essentiality, and curate metabolic models. PMID:33532729
Adaptation of a Microfluidic qPCR System for Enzyme Kinetic Studies. PMID:33521438
Structural insights into vesicle amine transport-1 (VAT-1) as a member of the NADPH-dependent quinone oxidoreductase family. PMID:33483563
Review on natural products databases: where to find data in 2020. PMID:33431011
Bayesian genome scale modelling identifies thermal determinants of yeast metabolism. PMID:33420025
Context-specific network modeling identifies new crosstalk in β-adrenergic cardiac hypertrophy. PMID:33338038
From Glucose to Lactate and Transiting Intermediates Through Mitochondria, Bypassing Pyruvate Kinase: Considerations for Cells Exhibiting Dimeric PKM2 or Otherwise Inhibited Kinase Activity. PMID:33335484
Manganese Depletion Leads to Multisystem Changes in the Transcriptome of the Opportunistic Pathogen Streptococcus sanguinis. PMID:33250881
GTRD: an integrated view of transcription regulation. PMID:33231677
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. PMID:33211880
Genome-Scale Metabolic Modeling Reveals Metabolic Alterations of Multidrug-Resistant Acinetobacter baumannii in a Murine Bloodstream Infection Model. PMID:33207684
MCIC: Automated Identification of Cellulases From Metagenomic Data and Characterization Based on Temperature and pH Dependence. PMID:33193158
Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior. PMID:33174603
Targeting Lipid Peroxidation for Cancer Treatment. PMID:33167334
Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production. PMID:33134082
DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools. PMID:33095861
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. PMID:33084862
Enzyme activities predicted by metabolite concentrations and solvent capacity in the cell. PMID:33050777
INTEDE: interactome of drug-metabolizing enzymes. PMID:33045737
Bioengineering studies and pathway modeling of the heterologous biosynthesis of tetrahydrocannabinolic acid in yeast. PMID:33043390
COVID-19: molecular targets, drug repurposing and new avenues for drug discovery. PMID:33027420
Genomic Characteristics Distinguish Geographically Distributed Dehalococcoidia. PMID:33013780
Whole-Genome Sequencing and Bioinformatics Analysis of Apiotrichum mycotoxinivorans: Predicting Putative Zearalenone-Degradation Enzymes. PMID:32849454
Serine restriction alters sphingolipid diversity to constrain tumour growth. PMID:32788725
Penicillin G acylase production by Mucor griseocyanus and the partial genetic analysis of its pga gene. PMID:32705496
Footprint-based functional analysis of multiomic data. PMID:32685770
Genome-Scale Metabolic Model Driven Design of a Defined Medium for Campylobacter jejuni M1cam. PMID:32636809
Representational Difference Analysis of Transcripts Involved in Jervine Biosynthesis. PMID:32575579
GTDB: an integrated resource for glycosyltransferase sequences and annotations. PMID:32542364
Highly active rubiscos discovered by systematic interrogation of natural sequence diversity. PMID:32500941
Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment. PMID:32469311
A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function. PMID:32449511
An Ultrasensitive Fluorescence Assay for the Detection of Halides and Enzymatic Dehalogenation. PMID:32362951
A peroxidase mimetic protects skeletal muscle cells from peroxide challenge and stimulates insulin signaling. PMID:32348172
Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies. PMID:32313959
novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model. PMID:32313937
Flux-based hierarchical organization of Escherichia coli's metabolic network. PMID:32310959
ProteinsPlus: interactive analysis of protein-ligand binding interfaces. PMID:32297936
A genome-wide approach for identification and characterisation of metabolite-inducible systems. PMID:32139676
Development of Supervised Learning Predictive Models for Highly Non-linear Biological, Biomedical, and General Datasets. PMID:32118039
A Novel D-Galacturonate Fermentation Pathway in Lactobacillus suebicus Links Initial Reactions of the Galacturonate-Isomerase Route With the Phosphoketolase Pathway. PMID:32010092
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. PMID:31950984
Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. PMID:31950972
Automatic construction of metabolic models with enzyme constraints. PMID:31937255
Identification of Novel Putative Bacterial Feruloyl Esterases From Anaerobic Ecosystems by Use of Whole-Genome Shotgun Metagenomics and Genome Binning. PMID:31824458
On the possible origin of protein homochirality, structure, and biochemical function. PMID:31822617
BIOPEP-UWM Database of Bioactive Peptides: Current Opportunities. PMID:31783634
Network reduction methods for genome-scale metabolic models. PMID:31748914
Key Factors for A One-Pot Enzyme Cascade Synthesis of High Molecular Weight Hyaluronic Acid. PMID:31726754
Modelling microbial communities using biochemical resource allocation analysis. PMID:31690234
Rewiring carbon metabolism in yeast for high level production of aromatic chemicals. PMID:31672987
SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update. PMID:31665520
Proteomic enzyme analysis of the marine fungus Paradendryphiella salina reveals alginate lyase as a minimal adaptation strategy for brown algae degradation. PMID:31451726
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism. PMID:31395883
The IDO Metabolic Trap Hypothesis for the Etiology of ME/CFS. PMID:31357483
Formation of Unstable and very Reactive Chemical Species Catalyzed by Metalloenzymes: A Mechanistic Overview. PMID:31277490
Metabopolis: scalable network layout for biological pathway diagrams in urban map style. PMID:30991966
Pectinase secreted by psychrotolerant fungi: identification, molecular characterization and heterologous expression of a cold-active polygalacturonase from Tetracladium sp. PMID:30845994
BRENDA in 2015: exciting developments in its 25th year of existence PubMed citations: 82.

82 articles citing: BRENDA in 2015: exciting developments in its 25th year of existence

Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining. PMID:35454109
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments. PMID:34751401
A protocol for dynamic model calibration. PMID:34619769
Accelerating antibiotic discovery through artificial intelligence. PMID:34504303
MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses. PMID:34156446
WormPaths: Caenorhabditis elegans metabolic pathway annotation and visualization. PMID:34117752
From Data Mining of Chitinophaga sp. Genome to Enzyme Discovery of a Hyperthermophilic Metallocarboxypeptidase. PMID:33673011
WormPaths: Caenorhabditis elegans metabolic pathway annotation and visualization. PMID:33398287
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. PMID:33211880
An analytical theory of balanced cellular growth. PMID:32144263
Reconstruction of a regulated two-cell metabolic model to study biohydrogen production in a diazotrophic cyanobacterium Anabaena variabilis ATCC 29413. PMID:31978122
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments. PMID:31665499
The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development. PMID:31560649
Molecular function limits divergent protein evolution on planetary timescales. PMID:31532392
Reproducible pharmacokinetics. PMID:31004315
Culture-enriched human gut microbiomes reveal core and accessory resistance genes. PMID:30953542
Modeling the interplay between DNA-PK, Artemis, and ATM in non-homologous end-joining repair in G1 phase of the cell cycle. PMID:30707386
Comparative genomics of the major parasitic worms. PMID:30397333
BRENDA in 2019: a European ELIXIR core data resource. PMID:30395242
Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. PMID:30306890
A community-driven reconstruction of the Aspergillus niger metabolic network. PMID:30275963
Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts. PMID:30195436
The marine bacterium Phaeobacter inhibens secures external ammonium by rapid buildup of intracellular nitrogen stocks. PMID:30124819
Systems analysis of intracellular pH vulnerabilities for cancer therapy. PMID:30065243
Computation and application of tissue-specific gene set weights. PMID:29659714
Genome and evolution of the shade-requiring medicinal herb Panax ginseng. PMID:29604169
A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways. PMID:29540736
STRENDA DB: enabling the validation and sharing of enzyme kinetics data. PMID:29498804
Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149. PMID:29375494
ALE: automated label extraction from GEO metadata. PMID:29297276
Exopolysaccharide production in Caulobacter crescentus: A resource allocation trade-off between protection and proliferation. PMID:29293585
Insights into substrate binding of ferulic acid esterases by arabinose and methyl hydroxycinnamate esters and molecular docking. PMID:29230049
MitoCore: a curated constraint-based model for simulating human central metabolism. PMID:29178872
Automated visualization of rule-based models. PMID:29131816
Confronting the catalytic dark matter encoded by sequenced genomes. PMID:29059321
Production of Recombinant Trichoderma reesei Cellobiohydrolase II in a New Expression System Based on Wickerhamomyces anomalus. PMID:28951785
Is systems pharmacology ready to impact upon therapy development? A study on the cholesterol biosynthesis pathway. PMID:28910500
Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity. PMID:28903046
Population FBA predicts metabolic phenotypes in yeast. PMID:28886026
Predicting multicellular function through multi-layer tissue networks. PMID:28881986
Halotolerant aminopeptidase M29 from Mesorhizobium SEMIA 3007 with biotechnological potential and its impact on biofilm synthesis. PMID:28878230
Nematode grazing promotes bacterial community dynamics in soil at the aggregate level. PMID:28742069
biochem4j: Integrated and extensible biochemical knowledge through graph databases. PMID:28708831
Development of a core Clostridium thermocellum kinetic metabolic model consistent with multiple genetic perturbations. PMID:28469704
Mutations in PMR1 stimulate xylose isomerase activity and anaerobic growth on xylose of engineered Saccharomyces cerevisiae by influencing manganese homeostasis. PMID:28401919
Transcriptomic Analyses Elucidate Adaptive Differences of Closely Related Strains of Pseudomonas aeruginosa in Fuel. PMID:28314727
Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. PMID:28212377
Characterization of Highly Efficient RNA-Cleaving DNAzymes that Function at Acidic pH with No Divalent Metal-Ion Cofactors. PMID:28168150
Comparative analysis of sterol acquisition in the oomycetes Saprolegnia parasitica and Phytophthora infestans. PMID:28152045
Protein Bioinformatics Databases and Resources. PMID:28150231
Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats. PMID:28106881
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Modeling Rice Metabolism: From Elucidating Environmental Effects on Cellular Phenotype to Guiding Crop Improvement. PMID:27965696
Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes. PMID:27939572
Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science. PMID:27929431
Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis. PMID:27924274
BRENDA in 2017: new perspectives and new tools in BRENDA. PMID:27924025
The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize. PMID:27899149
Effects of Glycosylation on the Enzymatic Activity and Mechanisms of Proteases. PMID:27898009
The Oxidosqualene Cyclase from the Oomycete Saprolegnia parasitica Synthesizes Lanosterol as a Single Product. PMID:27881978
Advances on plant-pathogen interactions from molecular toward systems biology perspectives. PMID:27870294
The genome of Onchocerca volvulus, agent of river blindness. PMID:27869790
A synthetic pathway for the fixation of carbon dioxide in vitro. PMID:27856910
Metabolic flexibility of mitochondrial respiratory chain disorders predicted by computer modelling. PMID:27697518
Arabidopsis TH2 Encodes the Orphan Enzyme Thiamin Monophosphate Phosphatase. PMID:27677881
Highlighting the Need for Systems-Level Experimental Characterization of Plant Metabolic Enzymes. PMID:27516767
Investigating the Role of TNF-α and IFN-γ Activation on the Dynamics of iNOS Gene Expression in LPS Stimulated Macrophages. PMID:27276061
Elevated Values of Clinically Relevant Transferases Induced by Imported Infectious Diseases: A Controlled Cross-Sectional Study of 14,559 Diseased German Travelers Returning from the Tropics and Subtropics. PMID:27215300
A Caenorhabditis elegans Genome-Scale Metabolic Network Model. PMID:27211857
Reaction Decoder Tool (RDT): extracting features from chemical reactions. PMID:27153692
HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data. PMID:27124774
SensiPath: computer-aided design of sensing-enabling metabolic pathways. PMID:27106061
Experimental and Metabolic Modeling Evidence for a Folate-Cleaving Side-Activity of Ketopantoate Hydroxymethyltransferase (PanB). PMID:27065985
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. PMID:27022157
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. PMID:26896844
Predictive Modeling of Drug Treatment in the Area of Personalized Medicine. PMID:26692759
From Single Variants to Protein Cascades: MULTISCALE MODELING OF SINGLE NUCLEOTIDE VARIANT SETS IN GENETIC DISORDERS. PMID:26601959
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB. PMID:26476444
BacDive--The Bacterial Diversity Metadatabase in 2016. PMID:26424852
Common Amino Acid Subsequences in a Universal Proteome--Relevance for Food Science. PMID:26340620
The SwissLipids knowledgebase for lipid biology. PMID:25943471
Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data. PMID:25871730
The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources PubMed citations: 79.

79 articles citing: The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources

RegEl corpus: identifying DNA regulatory elements in the scientific literature. PMID:35758881
A Hybrid Protocol for Finding Novel Gene Targets for Various Diseases Using Microarray Expression Data Analysis and Text Mining. PMID:35713858
PharmOmics: A species- and tissue-specific drug signature database and gene-network-based drug repositioning tool. PMID:35345455
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation. PMID:35101121
NETME: on-the-fly knowledge network construction from biomedical literature. PMID:35013714
Experiment level curation of transcriptional regulatory interactions in neurodevelopment. PMID:34665801
OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis. PMID:34632381
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks. PMID:34169280
Mapping the multiscale structure of biological systems. PMID:34139169
emiRIT: a text-mining-based resource for microRNA information. PMID:34048547
Human pathways in animal models: possibilities and limitations. PMID:33524155
CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology. PMID:33364592
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. PMID:33211880
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). PMID:32637990
ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets. PMID:31978042
Ontology-driven integrative analysis of omics data through Onassis. PMID:31959844
MetaboLights: a resource evolving in response to the needs of its scientific community. PMID:31691833
ProteomicsDB: a multi-omics and multi-organism resource for life science research. PMID:31665479
BioSCOOP - Biobank Sample Communication Protocol. New approach for the transfer of information between biobanks. PMID:31609452
miR2Diabetes: A Literature-Curated Database of microRNA Expression Patterns, in Diabetic Microvascular Complications. PMID:31601051
SEAweb: the small RNA Expression Atlas web application. PMID:31598718
Genome-wide functional association networks: background, data & state-of-the-art resources. PMID:31281921
Chickspress: a resource for chicken gene expression. PMID:31210271
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision. PMID:31199464
A data-driven interactome of synergistic genes improves network-based cancer outcome prediction. PMID:30726216
CoExpresso: assess the quantitative behavior of protein complexes in human cells. PMID:30626316
EDEn-Electroceutical Design Environment: Ion Channel Tissue Expression Database with Small Molecule Modulators. PMID:30590250
The BioGRID interaction database: 2019 update. PMID:30476227
BRENDA in 2019: a European ELIXIR core data resource. PMID:30395242
The jPOST environment: an integrated proteomics data repository and database. PMID:30295851
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. PMID:30166985
MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions. PMID:30137210
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
An intersection network based on combining SNP coassociation and RNA coexpression networks for feed utilization traits in Japanese Black cattle. PMID:29762780
miRwayDB: a database for experimentally validated microRNA-pathway associations in pathophysiological conditions. PMID:29688364
Computation and application of tissue-specific gene set weights. PMID:29659714
TISSUES 2.0: an integrative web resource on mammalian tissue expression. PMID:29617745
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. PMID:29447159
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. PMID:29126285
Drug target ontology to classify and integrate drug discovery data. PMID:29122012
SABIO-RK: an updated resource for manually curated biochemical reaction kinetics. PMID:29092055
Better living through ontologies at the Immune Epitope Database. PMID:28365732
BRENDA in 2017: new perspectives and new tools in BRENDA. PMID:27924025
XTalkDB: a database of signaling pathway crosstalk. PMID:27899583
The ChEMBL database in 2017. PMID:27899562
Genome-Wide Identification of Regulatory Sequences Undergoing Accelerated Evolution in the Human Genome. PMID:27401230
Ontology-based annotations and semantic relations in large-scale (epi)genomics data. PMID:27142216
LEAFDATA: a literature-curated database for Arabidopsis leaf development. PMID:26884807
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome. PMID:26481361
SIGNOR: a database of causal relationships between biological entities. PMID:26467481
RNASeqMetaDB: a database and web server for navigating metadata of publicly available mouse RNA-Seq datasets. PMID:26323714
BioModels: Content, Features, Functionality, and Use. PMID:26225232
Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes. PMID:26158728
Understanding multicellular function and disease with human tissue-specific networks. PMID:25915600
Linking gene expression to phenotypes via pathway information. PMID:25901272
Targeted exploration and analysis of large cross-platform human transcriptomic compendia. PMID:25581801
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. PMID:25431329
BRENDA in 2015: exciting developments in its 25th year of existence. PMID:25378310
The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource. PMID:25232097
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
Semantic Web repositories for genomics data using the eXframe platform. PMID:25093072
Computational prediction of disease microRNAs in domestic animals. PMID:24970281
Guidelines for managing data and processes in bone and cartilage tissue engineering. PMID:24564199
Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking. PMID:24155869
Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies. PMID:24037214
Combining evidence of preferential gene-tissue relationships from multiple sources. PMID:23950964
Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text. PMID:23703825
FYPO: the fission yeast phenotype ontology. PMID:23658422
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. PMID:23429179
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. PMID:23203881
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms. PMID:22621763
Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT. PMID:22615553
Nutritional metabolomics: progress in addressing complexity in diet and health. PMID:22540256
Context-specific protein network miner--an online system for exploring context-specific protein interaction networks from the literature. PMID:22493694
MOPED: Model Organism Protein Expression Database. PMID:22139914
neXtProt: a knowledge platform for human proteins. PMID:22139911
SABIO-RK--database for biochemical reaction kinetics. PMID:22102587

http://dx.doi.org/10.1093/nar/gkq968

Tags:

Tags
More detailed information about this field from each metasource.

cell
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

organ
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

reaction data
metasource: Fairsharing.org
version: FAIRsharing.org: BTO; BRENDA tissue / enzyme source; DOI: https://doi.org/10.25504/FAIRsharing.1414v8; Last edited: Aug. 5, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

genome annotation terms, ontologies and nomenclature
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

enzymes
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

biobank
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.505738

cell enzyme organ reaction data genomics genome annotation terms, ontologies and nomenclature ontology and terminology enzyme model organisms biobank microarray experiment

More to explore:

1/20

Previous Next

Need help integrating and/or managing biomedical data?

Webpage:

Licence:

More to explore:

1/20

BRENDA

Placental Cell Type

TISSUES

Cellosaurus

Enzyme nomenclature database

Cell Line Ontology

Enzyme Nomenclature

IGRhCellID

NeXO

Molecular Connections Cell Line Ontology

Gene Ontology

ExplorEnz

Cell Ontology

Breast tissue cell lines

GONUTS

Enzyme Portal

LINCS Extended Metadata Standard: Cell lines

IUBMB Nomenclature database

Breast Tissue Cell Lines Ontology

Enzyme Mechanism Ontology