FAIRsharing.f0bxfg; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

mirtarbase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

Other names: mirtarbase

This source may no longer be available. No known URL could be resolved successfully.

As a database, miRTarBase has accumulated more than fifty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after data mining of the text systematically to filter research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments. While containing the largest amount of validated MTIs, the miRTarBase provides the most updated collection by comparing with other similar, previously developed databases.

Webpage:

http://miRTarBase.mbc.nctu.edu.tw

Licence:

Name: MIRTAR is free for academic and non-profit use
URL: http://mirtarbase.mbc.nctu.edu.tw/cache/download/LICENSE

Publications:

Publications
More detailed information about this field from each metasource.

miRTarBase: a database curates experimentally validated microRNA-target interactions
PMID: 21071411
metasource: Fairsharing.org
version: FAIRsharing.org: miRTarBase; miRTarBase; DOI: https://doi.org/10.25504/FAIRsharing.f0bxfg; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

http://dx.doi.org/10.1093/nar/gkz896
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

miRTarBase: a database curates experimentally validated microRNA-target interactions PubMed citations: 616.

616 articles citing: miRTarBase: a database curates experimentally validated microRNA-target interactions

The role of miR-4469 as a tumor suppressor regulating inflammatory cell infiltration in colorectal cancer. PMID:35891783
Identification of MiRNA-Disease Associations Based on Information of Multi-Module and Meta-Path. PMID:35889314
Statistical Bioinformatics to Uncover the Underlying Biological Mechanisms That Linked Smoking with Type 2 Diabetes Patients Using Transcritpomic and GWAS Analysis. PMID:35889263
Identifying Potential Effective Diagnostic and Prognostic Biomarkers in Sepsis by Bioinformatics Analysis and Validation. PMID:35832399
Network analysis of synovial RNA sequencing identifies gene-gene interactions predictive of response in rheumatoid arthritis. PMID:35820911
Systems biology models to identify the influence of SARS-CoV-2 infections to the progression of human autoimmune diseases. PMID:35818398
Effects of Hypoxia on RNA Cargo in Extracellular Vesicles from Human Adipose-Derived Stromal/Stem Cells. PMID:35806391
mRNA, lncRNA and Circular RNA Expression Profiles in Granulosa Cells of Infertile Women with Ovarian Endometriosis. PMID:35799021
The silencing of miR-199a-5p protects the articular cartilage through MAPK4 in osteoarthritis. PMID:35722355
MIR146A and ADIPOQ genetic variants are associated with birth weight in relation to gestational age: a cohort study. PMID:35689735
Discovering miRNAs Associated With Multiple Sclerosis Based on Network Representation Learning and Deep Learning Methods. PMID:35656318
Study of microRNA expression in Salmonella Typhimurium-infected porcine ileum reveals miR-194a-5p as an important regulator of the TLR4-mediated inflammatory response. PMID:35598011
MicroRNA 449a can Attenuate Protective Effect of Urokinase Against Pulmonary Embolism. PMID:35571119
Characterizing the Inflammatory Microenvironment in K14-HPV16 Transgenic Mice: Mast Cell Infiltration and MicroRNA Expression. PMID:35565345
The identification of miRNA and mRNA expression profiles associated with pediatric atypical teratoid/rhabdoid tumor. PMID:35524230
lncRNA MALAT1 mediates osteogenic differentiation of bone mesenchymal stem cells by sponging miR-129-5p. PMID:35480561
Integrative analysis of TCGA data identifies miRNAs as drug-specific survival biomarkers. PMID:35474090
A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans. PMID:35463453
SARS-COV-2 as potential microRNA sponge in COVID-19 patients. PMID:35461273
Immune-related biomarkers shared by inflammatory bowel disease and liver cancer. PMID:35452485
Identification of a pyroptosis-related lncRNA risk model for predicting prognosis and immune response in colon adenocarcinoma. PMID:35413978
Blood-Based miRNA Biomarkers as Correlates of Brain-Based miRNA Expression. PMID:35392269
Identification of host transcriptome-guided repurposable drugs for SARS-CoV-1 infections and their validation with SARS-CoV-2 infections by using the integrated bioinformatics approaches. PMID:35390032
Ferroptosis-related gene SLC1A5 is a novel prognostic biomarker and correlates with immune infiltrates in stomach adenocarcinoma. PMID:35305616
Obesity and exercise training alter inflammatory pathway skeletal muscle small extracellular vesicle microRNAs. PMID:35293040
Screening and preliminary identification of long non-coding RNAs critical for osteogenic differentiation of human umbilical cord mesenchymal stem cells. PMID:35249446
Integrated analysis of ceRNA network reveals potential prognostic Hint1-related lncRNAs involved in hepatocellular carcinoma progression. PMID:35241097
Dysregulation of the miR-30c/DLL4 axis by circHIPK3 is essential for KSHV lytic replication. PMID:35239998
Pathway Analysis for Cancer Research and Precision Oncology Applications. PMID:35230687
Contribution of Host miRNA-223-3p to SARS-CoV-Induced Lung Inflammatory Pathology. PMID:35229638
Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data. PMID:35205414
Dissecting miRNA-Gene Networks to Map Clinical Utility Roads of Pharmacogenomics-Guided Therapeutic Decisions in Cardiovascular Precision Medicine. PMID:35203258
Machine learning and bioinformatics analysis revealed classification and potential treatment strategy in stage 3-4 NSCLC patients. PMID:35193578
TRmir: A Comprehensive Resource for Human Transcriptional Regulatory Information of MiRNAs. PMID:35186035
Mechanism of lncRNA SNHG16 in oxidative stress and inflammation in oxygen-glucose deprivation and reoxygenation-induced SK-N-SH cells. PMID:35170375
Upregulation of miR-34a-5p, miR-20a-3p and miR-29a-3p by Onconase in A375 Melanoma Cells Correlates with the Downregulation of Specific Onco-Proteins. PMID:35163570
CRISPR Editing Enables Consequential Tag-Activated MicroRNA-Mediated Endogene Deactivation. PMID:35163006
miR-17-5p promotes the invasion and migration of colorectal cancer by regulating HSPB2. PMID:35154459
A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC. PMID:35145542
A Hyperglycemic Microenvironment Inhibits Tendon-to-Bone Healing through the let-7b-5p/CFTR Pathway. PMID:35126637
The analysis of a ceRNA network and the correlation between lncRNA, miRNA, and mRNA in bladder cancer. PMID:35117432
Construction of dysregulated long non-coding RNA-associated competing endogenous RNA network in uterine corpus endometrial carcinoma. PMID:35117412
Comprehensively analyze the expression and prognostic role for ten-eleven translocations (TETs) in acute myeloid leukemia. PMID:35117329
Inter-tissue convergence of gene expression during ageing suggests age-related loss of tissue and cellular identity. PMID:35098922
Potential roles of hsa_circ_000839 and hsa_circ_0005986 in breast cancer. PMID:35098570
Systematic Review: microRNAs as Potential Biomarkers in Mild Cognitive Impairment Diagnosis. PMID:35095478
Altered White Matter and microRNA Expression in a Murine Model Related to Williams Syndrome Suggests That miR-34b/c Affects Brain Development via Ptpru and Dcx Modulation. PMID:35011720
Development of a novel and synthetic HematoMiR technology that broadly modulates quiescence of stem cells and enhances HSC expansion. PMID:34971431
MicroRNAs expression influence in ulcerative colitis and Crohn's disease: A pilot study for the identification of diagnostic biomarkers. PMID:34963743
Integral Analyses of Competing Endogenous RNA Mechanisms and DNA Methylation Reveal Regulatory Mechanisms in Osteosarcoma. PMID:34957096
Comprehensive analysis of the ceRNA network in coronary artery disease. PMID:34930980
TP53 Mutation Infers a Poor Prognosis and Is Correlated to Immunocytes Infiltration in Breast Cancer. PMID:34917611
Genome-wide identification of microRNA targets reveals positive regulation of the Hippo pathway by miR-122 during liver development. PMID:34907157
Identifying and characterizing lincRNA genomic clusters reveals its cooperative functions in human cancer. PMID:34906173
MicroRNAs as Novel Biomarkers for P2Y12 - Inhibitors Resistance Prediction. PMID:34880651
Identifying Diagnostic MicroRNAs and Investigating Their Biological Implications in Rectal Cancer. PMID:34860243
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. PMID:34850920
Prognostic Value of LHFPL Tetraspan Subfamily Member 6 (LHFPL6) in Gastric Cancer: A Study Based on Bioinformatics Analysis and Experimental Validation. PMID:34848995
MicroRNA Sequencing Analysis in Obstructive Sleep Apnea and Depression: Anti-Oxidant and MAOA-Inhibiting Effects of miR-15b-5p and miR-92b-3p through Targeting PTGS1-NF-κB-SP1 Signaling. PMID:34829725
Circulating miRNAs associated with bone mineral density in healthy adult baboons. PMID:34799865
Bioinformatic Analysis and Integration of Transcriptome and Proteome Results Identify Key Coding and Noncoding Genes Predicting Malignancy in Intraductal Papillary Mucinous Neoplasms of the Pancreas. PMID:34790815
CD4+ T-Cell Activation Prompts Suppressive Function by Extracellular Vesicle-Associated MicroRNAs. PMID:34778265
Gene regulatory network stabilized by pervasive weak repressions: microRNA functions revealed by the May-Wigner theory. PMID:34691996
Non-coding RNA in raw and commercially processed milk and putative targets related to growth and immune-response. PMID:34657595
Effects of Bacille Calmette Guerin (BCG) vaccination during COVID-19 infection. PMID:34624759
Aberrantly reduced expression of miR-342-5p contributes to CCND1-associated chronic myeloid leukemia progression and imatinib resistance. PMID:34611140
Prognostic Role of ceRNA Network in Immune Infiltration of Hepatocellular Carcinoma. PMID:34589117
miRkit: R framework analyzing miRNA PCR array data. PMID:34565441
Exosome: Function and Application in Inflammatory Bone Diseases. PMID:34504641
Integrated mRNA and miRNA Transcriptomic Analyses Reveals Divergent Mechanisms of Sunitinib Resistance in Clear Cell Renal Cell Carcinoma (ccRCC). PMID:34503211
An Ovarian Cancer Susceptible Gene Prediction Method Based on Deep Learning Methods. PMID:34485310
Construction of a ceRNA network of hub genes affecting immune infiltration in ovarian cancer identified by WGCNA. PMID:34461858
Development of a prognostic prediction model based on microRNA-1269a in esophageal cancer. PMID:34457197
Construction of a circRNA-Related Prognostic Risk Score Model for Predicting the Immune Landscape of Lung Adenocarcinoma. PMID:34434213
MicroRNA Databases and Tools. PMID:34432277
Genes, environment, and developmental timing: New insights from translational approaches to understand early origins of respiratory diseases. PMID:34388306
Construction of Circulating MicroRNAs-Based Non-invasive Prediction Models of Recurrent Implantation Failure by Network Analysis. PMID:34367263
Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer. PMID:34367239
Molecular Characterization and Elucidation of Pathways to Identify Novel Therapeutic Targets in Pulmonary Arterial Hypertension. PMID:34366885
Serum miRNA Profiling for Early PDAC Diagnosis and Prognosis: A Retrospective Study. PMID:34356909
The Potential Role of hsa_circ_0005505 in the Rupture of Human Intracranial Aneurysm. PMID:34336924
Integrated microRNA and mRNA signatures associated with overall survival in epithelial ovarian cancer. PMID:34320033
Circulating miRNAs in Serum as Biomarkers for Early Diagnosis of Non-small Cell Lung Cancer. PMID:34306018
Development of a Novel Immune Infiltration-Related ceRNA Network and Prognostic Model for Sarcoma. PMID:34277600
The relative expression of miR-31, miR-29, miR-126, and miR-17 and their mRNA targets in the serum of COVID-19 patients with different grades during hospitalization. PMID:34256840
Comprehensive analysis of lncRNA-miRNA-mRNA regulatory networks for microbiota-mediated colorectal cancer associated with immune cell infiltration. PMID:34227920
Identification and validation of a five-lncRNA signature for predicting survival with targeted drug candidates in ovarian cancer. PMID:34224310
Topological Analysis of Regulatory Networks Reveals Functionally Key Genes and miRNAs Involved in the Differentiation of Mesenchymal Stem Cells. PMID:34179189
Small RNA Sequencing of Aqueous Humor and Plasma in Patients With Primary Open-Angle Glaucoma. PMID:34156425
Identification of candidate targets for the diagnosis and treatment of atherosclerosis by bioinformatics analysis. PMID:34150004
Using Tumor-Infiltrating Immune Cells and a ceRNA Network Model to Construct a Prognostic Analysis Model of Thyroid Carcinoma. PMID:34141614
Network-based transcriptomic analysis identifies the genetic effect of COVID-19 to chronic kidney disease patients: A bioinformatics approach. PMID:34127904
Construction of lncRNA-related ceRNA regulatory network in diabetic subdermal endothelial cells. PMID:34124997
Comprehensive analysis of lncRNA biomarkers in kidney renal clear cell carcinoma by lncRNA-mediated ceRNA network. PMID:34101736
Identification of PGC-related ncRNAs and their relationship with the clinicopathological features of Gastric Cancer. PMID:34093839
Transcriptomic studies revealed pathophysiological impact of COVID-19 to predominant health conditions. PMID:34076249
Small-RNA Sequencing Reveals Altered Skeletal Muscle microRNAs and snoRNAs Signatures in Weanling Male Offspring from Mouse Dams Fed a Low Protein Diet during Lactation. PMID:34064819
Analysis of Circulating miRNA Profile in Plasma Samples of Glioblastoma Patients. PMID:34064637
The Role of Deregulated MicroRNAs in Age-Related Macular Degeneration Pathology. PMID:34003896
The Performance Comparison of Gene Co-expression Networks of Breast and Prostate Cancer using Different Selection Criteria. PMID:34003445
Exosome: The Regulator of the Immune System in Sepsis. PMID:33995102
Identification of an immune classification for cervical cancer and integrative analysis of multiomics data. PMID:33971902
Identification of potential autophagy-associated lncRNA in prostate cancer. PMID:33971627
Identification of the miRNA signature associated with survival in patients with ovarian cancer. PMID:33910165
Identification of novel prognostic biomarkers by integrating multi-omics data in gastric cancer. PMID:33902514
Bioinformatics and system biology approach to identify the influences of SARS-CoV-2 infections to idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease patients. PMID:33847347
Integrated Multi-Omic Analyses of the Genomic Modifications by Gut Microbiome-Derived Metabolites of Epicatechin, 5-(4'-Hydroxyphenyl)-γ-Valerolactone, in TNFalpha-Stimulated Primary Human Brain Microvascular Endothelial Cells. PMID:33841078
Bioinformatics and machine learning approach identifies potential drug targets and pathways in COVID-19. PMID:33839760
Distinct Age-Specific miRegulome Profiling of Isolated Small and Large Intestinal Epithelial Cells in Mice. PMID:33805523
The Genetic and Epigenetic Mechanisms Involved in Irreversible Pulp Neural Inflammation. PMID:33777260
CircNEIL3 regulatory loop promotes pancreatic ductal adenocarcinoma progression via miRNA sponging and A-to-I RNA-editing. PMID:33750389
Comprehensive analysis of ceRNA networks reveals prognostic lncRNAs related to immune infiltration in colorectal cancer. PMID:33750326
Appyters: Turning Jupyter Notebooks into data-driven web apps. PMID:33748796
Multi-factor mediated functional modules identify novel classification of ulcerative colitis and functional gene panel. PMID:33707495
Identification and validation of potential mRNA- microRNA- long-noncoding RNA (mRNA-miRNA-lncRNA) prognostic signature for cervical cancer. PMID:33682613
Comprehensive circRNA Expression Profile and Construction of circRNAs-Related ceRNA Network in a Mouse Model of Autism. PMID:33679870
Epigenetic Regulation of Processes Related to High Level of Fibroblast Growth Factor 21 in Obese Subjects. PMID:33670024
Deletion of hippocampal Glucocorticoid receptors unveils sex-biased microRNA expression and neuronal morphology alterations in mice. PMID:33665240
Identification of hub lncRNAs in head and neck cancer based on weighted gene co-expression network analysis and experiments. PMID:33660438
miRNA-296-5p functions as a potential tumor suppressor in human osteosarcoma by targeting SND1. PMID:33652459
Exosome-mediated radiosensitizing effect on neighboring cancer cells via increase in intracellular levels of reactive oxygen species. PMID:33649776
Identification of RCC Subtype-Specific microRNAs-Meta-Analysis of High-Throughput RCC Tumor microRNA Expression Data. PMID:33535553
Multiple Alu Exonization in 3'UTR of a Primate-Specific Isoform of CYP20A1 Creates a Potential miRNA Sponge. PMID:33434274
Interferon-γ and Hypoxia Priming Have Limited Effect on the miRNA Landscape of Human Mesenchymal Stromal Cells-Derived Extracellular Vesicles. PMID:33384991
An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids. PMID:33348802
MicroRNAs and Mammarenaviruses: Modulating Cellular Metabolism. PMID:33238430
Common diseases alter the physiological age-related blood microRNA profile. PMID:33235214
Plant miRNAs Reduce Cancer Cell Proliferation by Targeting MALAT1 and NEAT1: A Beneficial Cross-Kingdom Interaction. PMID:33193626
Dedifferentiation and neuronal repression define familial Alzheimer's disease. PMID:33188013
Comprehensive bioinformatics analysis of the TP53 signaling pathway in Wilms' tumor. PMID:33178760
miRNA profiles of canine cutaneous mast cell tumours with early nodal metastasis and evaluation as potential biomarkers. PMID:33144602
Biomarker exploration of microRNA-203 as a promising substrate for predicting poor survival outcome in colorectal cancer. PMID:33059609
miRNA profiling of primate cervicovaginal lavage and extracellular vesicles reveals miR-186-5p as a potential antiretroviral factor in macrophages. PMID:33017084
miRNAs Predicted to Regulate Host Anti-viral Gene Pathways in IPNV-Challenged Atlantic Salmon Fry Are Affected by Viral Load, and Associated With the Major IPN Resistance QTL Genotypes in Late Infection. PMID:33013890
Aberration of the modulatory functions of intronic microRNA hsa-miR-933 on its host gene ATF2 results in type II diabetes mellitus and neurodegenerative disease development. PMID:32993798
The microRNA miR-133b functions to slow Duchenne muscular dystrophy pathogenesis. PMID:32991751
A panel of 8 miRNAs as a novel diagnostic biomarker in pancreatic cancer. PMID:32957376
Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network. PMID:32952599
lncRNA PCNAP1 predicts poor prognosis in breast cancer and promotes cancer metastasis via miR‑340‑5p‑dependent upregulation of SOX4. PMID:32945462
MasterPATH: network analysis of functional genomics screening data. PMID:32928103
Identification of microRNA-451a as a Novel Circulating Biomarker for Colorectal Cancer Diagnosis. PMID:32908896
Evidence that dysplasia related microRNAs in Barrett's esophagus target PD-L1 expression and contribute to the development of esophageal adenocarcinoma. PMID:32903213
Investigating Core Signaling Pathways of Hepatitis B Virus Pathogenesis for Biomarkers Identification and Drug Discovery via Systems Biology and Deep Learning Method. PMID:32878239
Differential Expression and miRNA-Gene Interactions in Early and Late Mild Cognitive Impairment. PMID:32872134
Bioinformatics analysis of microRNA linked to ubiquitin proteasome system in traumatic osteonecrosis of the femoral head. PMID:32872046
Systematic Evaluation of the Diagnostic and Prognostic Significance of Competitive Endogenous RNA Networks in Prostate Cancer. PMID:32849794
MicroRNAs Modulate the Pathogenesis of Alzheimer's Disease: An In Silico Analysis in the Human Brain. PMID:32846925
Pten and Dicer1 loss in the mouse uterus causes poorly differentiated endometrial adenocarcinoma. PMID:32843721
Pathogenetic profiling of COVID-19 and SARS-like viruses. PMID:32778874
Identification of circRNA-lncRNA-miRNA-mRNA Competitive Endogenous RNA Network as Novel Prognostic Markers for Acute Myeloid Leukemia. PMID:32751923
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma. PMID:32703153
Identification and Analysis of p53-Regulated Enhancers in Hepatic Carcinoma. PMID:32695760
miR155 regulation of behavior, neuropathology, and cortical transcriptomics in Alzheimer's disease. PMID:32666270
Molecular signatures identified by integrating gene expression and methylation in non-seminoma and seminoma of testicular germ cell tumours. PMID:32615059
MicroRNAs alteration as early biomarkers for cancer and neurodegenerative diseases: New challenges in pesticides exposure. PMID:32612936
Absence of miRNA-146a Differentially Alters Microglia Function and Proteome. PMID:32582192
Construction and analysis of a lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in oral cancer. PMID:32571304
Circulating MicroRNAs and Extracellular Vesicle-Containing MicroRNAs as Response Biomarkers of Anti-programmed Cell Death Protein 1 or Programmed Death-Ligand 1 Therapy in NSCLC. PMID:32565389
MicroRNA-mRNA Co-sequencing Identifies Transcriptional and Post-transcriptional Regulatory Networks Underlying Muscle Wasting in Cancer Cachexia. PMID:32547603
Identification of Altered miRNAs in Cerumen of Dogs Affected by Otitis Externa. PMID:32547539
Identification of genes and miRNA associated with idiopathic recurrent pregnancy loss: an exploratory data mining study. PMID:32487076
Bioinformatics Analysis Identifies the Estrogen Receptor 1 (ESR1) Gene and hsa-miR-26a-5p as Potential Prognostic Biomarkers in Patients with Intrahepatic Cholangiocarcinoma. PMID:32435051
Identification of microRNAs associated with the survival of patients with gallbladder carcinoma. PMID:32406793
Comprehensive analysis of the long non-coding RNA-associated competitive endogenous RNA network reveals novel prognostic biomarkers in Wilms' tumor. PMID:32382326
Prediction of miRNA targets by learning from interaction sequences. PMID:32369518
Unique microRNA alterations in hepatocellular carcinomas arising either spontaneously or due to chronic exposure to Ginkgo biloba extract (GBE) in B6C3F1/N mice. PMID:32306082
Weighted gene correlation network analysis reveals novel biomarkers associated with mesenchymal stromal cell differentiation in early phase. PMID:32280568
miRNA target identification and prediction as a function of time in gene expression data. PMID:32249661
Network-based computational approach to identify genetic links between cardiomyopathy and its risk factors. PMID:32196466
Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL. PMID:32188505
MicroRNA-361-Mediated Inhibition of HSP90 Expression and EMT in Cervical Cancer Is Counteracted by Oncogenic lncRNA NEAT1. PMID:32151082
LeukmiR: a database for miRNAs and their targets in acute lymphoblastic leukemia. PMID:32128558
Integrated characterization and validation of the prognostic significance of microRNA-200s in colorectal cancer. PMID:32099529
Network-Based Genetic Profiling Reveals Cellular Pathway Differences Between Follicular Thyroid Carcinoma and Follicular Thyroid Adenoma. PMID:32093341
Proteogenomic Characterization of Endometrial Carcinoma. PMID:32059776
Improving Bioinformatics Prediction of microRNA Targets by Ranks Aggregation. PMID:32047509
A Network-Based Bioinformatics Approach to Identify Molecular Biomarkers for Type 2 Diabetes that Are Linked to the Progression of Neurological Diseases. PMID:32041280
Differential expression of matrix metalloproteinases and miRNAs in the metastasis of oral squamous cell carcinoma. PMID:31996191
Circulating miRNAs and Risk of Sudden Death in Patients With Coronary Heart Disease. PMID:31971908
MicroRNAs and regulated interaction networks reveal differences between adult and pediatric acute myeloid leukemia. PMID:31966399
MicroRNA and transcription factor co-regulatory networks and subtype classification of seminoma and non-seminoma in testicular germ cell tumors. PMID:31965022
Comprehensive analysis of mRNA-level and miRNA-level subpathway activities for identifying robust ovarian cancer prognostic signatures. PMID:31957240
Deep Sequencing Analysis Reveals Distinctive Non-Coding RNAs When Comparing Tumor Multidrug-Resistant Cells and Extracellular Vesicles with Drug-Sensitive Counterparts. PMID:31947507
Neonatal Injury Increases Gut Permeability by Epigenetically Suppressing E-Cadherin in Adulthood. PMID:31889022
miR-7 Restores Phenotypes in Myotonic Dystrophy Muscle Cells by Repressing Hyperactivated Autophagy. PMID:31855836
miR-770-5p modulates resistance to methotrexate in human colorectal adenocarcinoma cells by downregulating HIPK1. PMID:31853309
RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome. PMID:31848596
Up-regulation of miR-let7a-5p Leads to Decreased Expression of ABCC2 in Obstructive Cholestasis. PMID:31832574
Transcriptional Characterization of Stage I Epithelial Ovarian Cancer: A Multicentric Study. PMID:31805750
DeepMiR2GO: Inferring Functions of Human MicroRNAs Using a Deep Multi-Label Classification Model. PMID:31801264
Genome-wide analysis to identify a novel microRNA signature that predicts survival in patients with stomach adenocarcinoma. PMID:31772663
Competing endogenous network analysis identifies lncRNA Meg3 activates inflammatory damage in UVB induced murine skin lesion by sponging miR-93-5p/epiregulin axis. PMID:31761787
Screening potential prognostic biomarkers of long non-coding RNAs for predicting the risk of chronic kidney disease. PMID:31721901
A 3-circular RNA signature as a noninvasive biomarker for diagnosis of colorectal cancer. PMID:31700498
MicroRNA-425-5p Expression Affects BRAF/RAS/MAPK Pathways In Colorectal Cancers. PMID:31673240
miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database. PMID:31647101
MicroRNA Assisted Gene Regulation in Colorectal Cancer. PMID:31623294
Gene Regulatory Networks in Peripheral Mononuclear Cells Reveals Critical Regulatory Modules and Regulators of Multiple Sclerosis. PMID:31484947
Competing Endogenous RNA and Coexpression Network Analysis for Identification of Potential Biomarkers and Therapeutics in association with Metastasis Risk and Progression of Prostate Cancer. PMID:31467637
Quantifying Risk Pathway Crosstalk Mediated by miRNA to Screen Precision drugs for Breast Cancer Patients. PMID:31466383
Integrated Analysis of miRNA and mRNA Endorses a Twenty miRNAs Signature for Colorectal Carcinoma. PMID:31434359
Topologically inferring active miRNA-mediated subpathways toward precise cancer classification by directed random walk. PMID:31408573
A network-based analysis for mining the risk pathways in glioblastoma. PMID:31402957
Integrated analysis of lncRNA, miRNA and mRNA expression profiling in patients with systemic lupus erythematosus. PMID:31360182
Enterotype-based Analysis of Gut Microbiota along the Conventional Adenoma-Carcinoma Colorectal Cancer Pathway. PMID:31358825
An Exosomal Urinary miRNA Signature for Early Diagnosis of Renal Fibrosis in Lupus Nephritis. PMID:31349698
Co-expression analysis reveals dysregulated miRNAs and miRNA-mRNA interactions in the development of contrast-induced acute kidney injury. PMID:31306435
Selective miRNA Modulation Fails to Activate HIV Replication in In Vitro Latency Models. PMID:31288207
Biology and Bias in Cell Type-Specific RNAseq of Nucleus Accumbens Medium Spiny Neurons. PMID:31171808
An in-silico approach for discovery of microRNA-TF regulation of DISC1 interactome mediating neuronal migration. PMID:31098296
Identification of potential biomarkers for diagnosis of pancreatic and biliary tract cancers by sequencing of serum microRNAs. PMID:31096984
Drug Resistance-Related Competing Interactions of lncRNA and mRNA across 19 Cancer Types. PMID:31048183
Antagonism between the RNA-binding protein Musashi1 and miR-137 and its potential impact on neurogenesis and glioblastoma development. PMID:31004009
FCMDAP: using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs. PMID:30953512
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis. PMID:30931480
HisCoM-mimi: Software for Hierarchical Structural Component Analysis for miRNA-mRNA Integration Model for Binary Phenotypes. PMID:30929411
Interaction with hyaluronan matrix and miRNA cargo as contributors for in vitro potential of mesenchymal stem cell-derived extracellular vesicles in a model of human osteoarthritic synoviocytes. PMID:30922413
Downregulation of microRNA-374a predicts poor prognosis in human glioma. PMID:30867694
Bioinformatic analysis of miR-4792 regulates Radix Tetrastigma hemsleyani flavone to inhibit proliferation, invasion, and induce apoptosis of A549 cells. PMID:30863107
miR-29b Mediates the Chronic Inflammatory Response in Radiotherapy-Induced Vascular Disease. PMID:30847421
CircHMGCS1 Promotes Hepatoblastoma Cell Proliferation by Regulating the IGF Signaling Pathway and Glutaminolysis. PMID:30809316
Predicting Gene Ontology Function of Human MicroRNAs by Integrating Multiple Networks. PMID:30761178
FMSM: a novel computational model for predicting potential miRNA biomarkers for various human diseases. PMID:30598090
Identification and prediction of novel non-coding and coding RNA-associated competing endogenous RNA networks in colorectal cancer. PMID:30581274
miR-4516 predicts poor prognosis and functions as a novel oncogene via targeting PTPN14 in human glioblastoma. PMID:30559405
MicroRNA cluster miR199a/214 are differentially expressed in female and male rats following nicotine self-administration. PMID:30504847
Identification and Characterization of MicroRNAs Associated with Somatic Copy Number Alterations in Cancer. PMID:30501131
miRNA Mediated Noise Making of 3'UTR Mutations in Cancer. PMID:30424545
Molecular Correlates of Metastasis by Systematic Pan-Cancer Analysis Across The Cancer Genome Atlas. PMID:30401717
Arena-Idb: a platform to build human non-coding RNA interaction networks. PMID:30367585
Computing of Low Shear Stress-Driven Endothelial Gene Network Involved in Early Stages of Atherosclerotic Process. PMID:30356351
On the Importance of Host MicroRNAs During Viral Infection. PMID:30333857
Role of flow-sensitive microRNAs and long noncoding RNAs in vascular dysfunction and atherosclerosis. PMID:30300747
A Filtering Method for Identification of Significant Target mRNAs of Coexpressed and Differentially Expressed MicroRNA Clusters. PMID:30298100
Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis. PMID:30292704
Prediction of candidate RNA signatures for recurrent ovarian cancer prognosis by the construction of an integrated competing endogenous RNA network. PMID:30226545
Differential miRNA Expression Profiles in Cumulus and Mural Granulosa Cells from Human Pre-ovulatory Follicles. PMID:30207252
Investigating genetic-and-epigenetic networks, and the cellular mechanisms occurring in Epstein-Barr virus-infected human B lymphocytes via big data mining and genome-wide two-sided NGS data identification. PMID:30133498
Identification of pathways significantly associated with spondyloarthropathy/ankylosing spondylitis using the sub‑pathway method. PMID:30132545
Genome-scale analysis to identify prognostic microRNA biomarkers in patients with early stage pancreatic ductal adenocarcinoma after pancreaticoduodenectomy. PMID:30127641
Integrative analysis of the inter-tumoral heterogeneity of triple-negative breast cancer. PMID:30087365
Genome‑scale analysis to identify potential prognostic microRNA biomarkers for predicting overall survival in patients with colon adenocarcinoma. PMID:30066920
Overview upon miR-21 in lung cancer: focus on NSCLC. PMID:30030592
PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. PMID:30007348
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Detection of dysregulated competing endogenous RNA modules associated with clear cell kidney carcinoma. PMID:29956728
Comparison of multi-lineage differentiation of hiPSCs reveals novel miRNAs that regulate lineage specification. PMID:29941943
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. PMID:29937276
Systematic analyses reveal long non-coding RNA (PTAF)-mediated promotion of EMT and invasion-metastasis in serous ovarian cancer. PMID:29929545
Discovery of two-level modular organization from matched genomic data via joint matrix tri-factorization. PMID:29878151
A data-driven, knowledge-based approach to biomarker discovery: application to circulating microRNA markers of colorectal cancer prognosis. PMID:29872543
Regulatory role of resveratrol, a microRNA-controlling compound, in HNRNPA1 expression, which is associated with poor prognosis in breast cancer. PMID:29872500
Construction of a specific SVM classifier and identification of molecular markers for lung adenocarcinoma based on lncRNA-miRNA-mRNA network. PMID:29872324
miR-34a-mediated regulation of XIST in female cells under inflammation. PMID:29773953
miRNA-135b Contributes to Triple Negative Breast Cancer Molecular Heterogeneity: Different Expression Profile in Basal-like Versus non-Basal-like Phenotypes. PMID:29725243
Prediction of microRNA and gene target from an integrated network in chronic obstructive pulmonary disease based on canonical correlation analysis. PMID:29710745
miRwayDB: a database for experimentally validated microRNA-pathway associations in pathophysiological conditions. PMID:29688364
Profiling and Bioinformatic Analyses Indicate Differential circRNA and miRNA/isomiR Expression and Interactions. PMID:29682564
Micro-RNA Feedback Loops Modulating the Calcineurin/NFAT Signaling Pathway. PMID:29657261
Identification of a robust subpathway-based signature for acute myeloid leukemia prognosis using an miRNA integrated strategy. PMID:29570744
A circulating microRNA signature as noninvasive diagnostic and prognostic biomarkers for nonalcoholic steatohepatitis. PMID:29523084
Exercise and weight loss interventions and miRNA expression in women with breast cancer. PMID:29511965
MiR-9-5p and miR-106a-5p dysregulated in CD4+ T-cells of multiple sclerosis patients and targeted essential factors of T helper17/regulatory T-cells differentiation. PMID:29511494
Genetic variation in P2RX7 and pain tolerance. PMID:29470314
Identifying characteristic miRNAs-genes and risk pathways of multiple sclerosis based on bioinformatics analysis. PMID:29435179
Regulatory role of microRNA in mesenteric lymph nodes after Salmonella Typhimurium infection. PMID:29391047
A support vector machine and a random forest classifier indicates a 15-miRNA set related to osteosarcoma recurrence. PMID:29379305
Construction and investigation of lncRNA-associated ceRNA regulatory network in papillary thyroid cancer. PMID:29328463
Replenishing exosomes from older bone marrow stromal cells with miR-340 inhibits myeloma-related angiogenesis. PMID:29296725
About miRNAs, miRNA seeds, target genes and target pathways. PMID:29291020
Profiling analysis of circulating microRNA in peripheral blood of patients with class IV lupus nephritis. PMID:29136041
sPAGM: inferring subpathway activity by integrating gene and miRNA expression-robust functional signature identification for melanoma prognoses. PMID:29127397
miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions. PMID:29126174
MicroRNA regulation of type 2 innate lymphoid cell homeostasis and function in allergic inflammation. PMID:29122948
MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases. PMID:29106642
Biomarker MicroRNAs for Diagnosis of Oral Squamous Cell Carcinoma Identified Based on Gene Expression Data and MicroRNA-mRNA Network Analysis. PMID:29098014
A novel miRNA analysis framework to analyze differential biological networks. PMID:29097749
Constructing prediction models from expression profiles for large scale lncRNA-miRNA interaction profiling. PMID:29069317
Biological function integrated prediction of severe radiographic progression in rheumatoid arthritis: a nested case control study. PMID:29065906
Non-coding RNAs and Their Roles in Stress Response in Plants. PMID:29017967
Investigating the microRNA-mRNA regulatory network in acute myeloid leukemia. PMID:28989535
IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactions. PMID:28977416
Drug repurposing in idiopathic pulmonary fibrosis filtered by a bioinformatics-derived composite score. PMID:28974751
MiR-148a impairs Ras/ERK signaling in B lymphocytes by targeting SOS proteins. PMID:28915601
MiRNA-target network analysis identifies potential biomarkers for Traditional Chinese Medicine (TCM) syndrome development evaluation in hepatitis B caused liver cirrhosis. PMID:28887510
A new method to study the change of miRNA-mRNA interactions due to environmental exposures. PMID:28881990
Overexpression of Exportin-5 Overrides the Inhibitory Effect of miRNAs Regulation Control and Stabilize Proteins via Posttranslation Modifications in Prostate Cancer. PMID:28881308
MicroRNA profile for health risk assessment: Environmental exposure to persistent organic pollutants strongly affects the human blood microRNA machinery. PMID:28835693
Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures. PMID:28775339
Circulating microRNAs and association with methacholine PC20 in the Childhood Asthma Management Program (CAMP) cohort. PMID:28749975
Large-Scale Analysis of Drug Side Effects via Complex Regulatory Modules Composed of microRNAs, Transcription Factors and Gene Sets. PMID:28729650
HDNetDB: A Molecular Interaction Database for Network-Oriented Investigations into Huntington's Disease. PMID:28701700
An E2F1/MiR-17-92 Negative Feedback Loop mediates proliferation of Mouse Palatal Mesenchymal Cells. PMID:28698574
Identifying differential miR and gene consensus patterns in peripheral blood of patients with cardiovascular diseases from literature data. PMID:28666417
Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. PMID:28609293
A Distinct Inhibitory Function for miR-18a in Th17 Cell Differentiation. PMID:28607111
Differential expression analysis at the individual level reveals a lncRNA prognostic signature for lung adenocarcinoma. PMID:28587642
Genome-wide profiling and differential expression of microRNA in rat pluripotent stem cells. PMID:28584262
MicroRNA profiling in the dentate gyrus in epileptic rats: The role of miR-187-3p. PMID:28562528
Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression. PMID:28538367
Digital analysis and epigenetic regulation of the signature of rejection in colorectal cancer. PMID:28507795
MicroRNAs as biomarkers associated with bladder cancer. PMID:28491850
Annotating function to differentially expressed LincRNAs in myelodysplastic syndrome using a network-based method. PMID:28472271
miR-10a and miR-204 as a Potential Prognostic Indicator in Low-Grade Gliomas. PMID:28469392
A subset of microRNAs defining the side population of a human malignant mesothelioma cell line. PMID:28467812
Identification of MicroRNA Targets of Capsicum spp. Using MiRTrans-a Trans-Omics Approach. PMID:28443105
Functional Roles of microRNAs in Agronomically Important Plants-Potential as Targets for Crop Improvement and Protection. PMID:28382044
Delineating the impact of machine learning elements in pre-microRNA detection. PMID:28367373
Literature-based condition-specific miRNA-mRNA target prediction. PMID:28362846
Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization. PMID:28347313
Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite. PMID:28340554
Reverse Expression of Aging-Associated Molecules through Transfection of miRNAs to Aged Mice. PMID:28325277
Exploring the FGFR3-related oncogenic mechanism in bladder cancer using bioinformatics strategy. PMID:28320388
The miR-200 family is increased in dysplastic lesions in ulcerative colitis patients. PMID:28288169
Noncoding Effects of Circular RNA CCDC66 Promote Colon Cancer Growth and Metastasis. PMID:28249903
miRNAs target databases: developmental methods and target identification techniques with functional annotations. PMID:28204845
Identifying survival-associated modules from the dysregulated triplet network in glioblastoma multiforme. PMID:28168356
Sustained expression of miR-26a promotes chromosomal instability and tumorigenesis through regulation of CHFR. PMID:28126920
Epigenetic profiling of human brain differential DNA methylation networks in schizophrenia. PMID:28117656
Associations between hepatic miRNA expression, liver triacylglycerols and gut microbiota during metabolic adaptation to high-fat diet in mice. PMID:28105518
Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PMID:28103241
miRNA and mRNA expression analysis reveals potential sex-biased miRNA expression. PMID:28045090
m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks. PMID:28027310
Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data. PMID:27992375
Biomarker MicroRNAs for Diagnosis, Prognosis and Treatment of Hepatocellular Carcinoma: A Functional Survey and Comparison. PMID:27917899
miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA-target interaction data. PMID:27903911
Primary tumor microRNA signature predicts recurrence and survival in patients with locally advanced esophageal adenocarcinoma. PMID:27793030
Prioritizing cancer-related microRNAs by integrating microRNA and mRNA datasets. PMID:27734929
Clinical Relevance and Molecular Phenotypes in Gastric Cancer, of TP53 Mutations and Gene Expressions, in Combination With Other Gene Mutations. PMID:27708434
Analysis of microRNA and Gene Expression Profiles in Multiple Sclerosis: Integrating Interaction Data to Uncover Regulatory Mechanisms. PMID:27694855
Modulation of Immune Responses by Exosomes Derived from Antigen-Presenting Cells. PMID:27660518
Circulating microRNA-192 as a diagnostic biomarker in human chronic lymphocytic leukemia. PMID:27659777
Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants. PMID:27656207
Transcription factor HIF1A: downstream targets, associated pathways, polymorphic hypoxia response element (HRE) sites, and initiative for standardization of reporting in scientific literature. PMID:27644243
Airway Secretory microRNAome Changes during Rhinovirus Infection in Early Childhood. PMID:27643599
Regulatory network analysis of microRNAs and genes in imatinib-resistant chronic myeloid leukemia. PMID:27638632
Subpathway-LNCE: Identify dysfunctional subpathways competitively regulated by lncRNAs through integrating lncRNA-mRNA expression profile and pathway topologies. PMID:27634882
Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study. PMID:27564214
Irregular G-quadruplexes Found in the Untranslated Regions of Human mRNAs Influence Translation. PMID:27557661
Identification of rifampin-regulated functional modules and related microRNAs in human hepatocytes based on the protein interaction network. PMID:27557147
An integrative genomics approach for identifying novel functional consequences of PBRM1 truncated mutations in clear cell renal cell carcinoma (ccRCC). PMID:27556922
Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves. PMID:27515123
Regulation of proinflammatory genes by the circulating microRNA hsa-miR-939. PMID:27498764
MiRSEA: Discovering the pathways regulated by dysfunctional MicroRNAs. PMID:27474169
Elucidation of transcriptome-wide microRNA binding sites in human cardiac tissues by Ago2 HITS-CLIP. PMID:27418678
MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants. PMID:27379117
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. PMID:27374120
The impact of feature selection on one and two-class classification performance for plant microRNAs. PMID:27366641
Increased miR-132-3p expression is associated with chronic neuropathic pain. PMID:27349406
Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs. PMID:27329603
MicroRNA-mRNA interactions underlying colorectal cancer molecular subtypes. PMID:27305450
Integrated miRNA-risk gene-pathway pair network analysis provides prognostic biomarkers for gastric cancer. PMID:27284247
Coexpression Network Analysis of Benign and Malignant Phenotypes of SIV-Infected Sooty Mangabey and Rhesus Macaque. PMID:27280726
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. PMID:27275538
Transcriptional Profiling and miRNA-Target Network Analysis Identify Potential Biomarkers for Efficacy Evaluation of Fuzheng-Huayu Formula-Treated Hepatitis B Caused Liver Cirrhosis. PMID:27271613
Prediction of miRNA-disease associations with a vector space model. PMID:27246786
Identification of associations between small molecule drugs and miRNAs based on functional similarity. PMID:27232942
Identification of prognostic biomarkers in glioblastoma using a long non-coding RNA-mediated, competitive endogenous RNA network. PMID:27229531
miRNA-dependent target regulation: functional characterization of single-nucleotide polymorphisms identified in genome-wide association studies of Alzheimer's disease. PMID:27215977
Fructose, but not glucose, impairs insulin signaling in the three major insulin-sensitive tissues. PMID:27194405
Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants. PMID:27190509
Comprehensive Characterization of Molecular Differences in Cancer between Male and Female Patients. PMID:27165743
How Hepatitis C Virus Leads to Hepatocellular Carcinoma: A Network-Based Study. PMID:27148389
miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis. PMID:27105848
Downregulation of Plasma miR-215 in Chronic Myeloid Leukemia Patients with Successful Discontinuation of Imatinib. PMID:27092489
CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction. PMID:27059647
Combining miRNA and mRNA Expression Profiles in Wilms Tumor Subtypes. PMID:27043538
miTALOS v2: Analyzing Tissue Specific microRNA Function. PMID:26998997
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. PMID:26989145
shRNA target prediction informed by comprehensive enquiry (SPICE): a supporting system for high-throughput screening of shRNA library. PMID:26941783
Key Immune Events of the Pathomechanisms of Early Cardioembolic Stroke: Multi-Database Mining and Systems Biology Approach. PMID:26927091
Complementary Post Transcriptional Regulatory Information is Detected by PUNCH-P and Ribosome Profiling. PMID:26898226
Identification of differentially expressed miRNAs in individual breast cancer patient and application in personalized medicine. PMID:26878388
Osteogenic Differentiation of MSC through Calcium Signaling Activation: Transcriptomics and Functional Analysis. PMID:26828589
A six-microRNA set as prognostic indicators for bile duct cancer. PMID:26770318
Comparison of Prognostic MicroRNA Biomarkers in Blood and Tissues for Gastric Cancer. PMID:26722365
Construction and analysis of three networks of genes and microRNAs in adenocarcinoma. PMID:26722320
Dysregulated miR-671-5p / CDR1-AS / CDR1 / VSNL1 axis is involved in glioblastoma multiforme. PMID:26683098
Exosomes from bulk and stem cells from human prostate cancer have a differential microRNA content that contributes cooperatively over local and pre-metastatic niche. PMID:26675257
microRNA and gene networks in human laryngeal cancer. PMID:26668624
Uncovering MicroRNA Regulatory Hubs that Modulate Plasma Cell Differentiation. PMID:26655851
Detection of gene communities in multi-networks reveals cancer drivers. PMID:26639632
Network analysis of microRNAs and genes in human osteosarcoma. PMID:26622516
The role, mechanism and potentially novel biomarker of microRNA-17-92 cluster in macrosomia. PMID:26598317
Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. PMID:26590090
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. PMID:26586797
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. PMID:26578966
Bioinformatic tools for microRNA dissection. PMID:26578605
rVarBase: an updated database for regulatory features of human variants. PMID:26503253
Five miRNAs Considered as Molecular Targets for Predicting Esophageal Cancer. PMID:26498375
Altered microRNA profiles in cerebrospinal fluid exosome in Parkinson disease and Alzheimer disease. PMID:26497684
Decreased MicroRNA-26a expression causes cisplatin resistance in human non-small cell lung cancer. PMID:26492332
Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. PMID:26481356
Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies. PMID:26472186
miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. PMID:26424084
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. PMID:26424082
Semantic biomedical resource discovery: a Natural Language Processing framework. PMID:26423616
miRTex: A Text Mining System for miRNA-Gene Relation Extraction. PMID:26407127
Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential. PMID:26391647
SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins. PMID:26383775
Current understanding of the role of microRNAs in spinocerebellar ataxias. PMID:26331031
Integrative analysis of multi-omics data for identifying multi-markers for diagnosing pancreatic cancer. PMID:26328610
Validated MicroRNA Target Databases: An Evaluation. PMID:26286669
Five miRNAs considered as molecular targets for predicting neuroglioma. PMID:26269115
Altered microRNA expression profile in synovial fluid from patients with knee osteoarthritis with treatment of hyaluronic acid. PMID:26232909
OCDB: a database collecting genes, miRNAs and drugs for obsessive-compulsive disorder. PMID:26228432
Dynamical Regulation Analysis Identifies Molecular Mechanisms of Fuzheng-Huayu Formula against Hepatitis B-Caused Liver Cirrhosis. PMID:26221171
Integrated systems approach identifies risk regulatory pathways and key regulators in coronary artery disease. PMID:26208504
Differential and coherent processing patterns from small RNAs. PMID:26166713
Transcriptional Perturbations in Graft Rejection. PMID:26154388
Oncogenic Role of miR-15a-3p in 13q Amplicon-Driven Colorectal Adenoma-to-Carcinoma Progression. PMID:26148070
Altered microRNA Expression Profiles of Extracellular Vesicles in Nasal Mucus From Patients With Allergic Rhinitis. PMID:26122505
Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cells. PMID:26074776
Particulate Air Pollution Exposure and Expression of Viral and Human MicroRNAs in Blood: The Beijing Truck Driver Air Pollution Study. PMID:26068961
Circulating small non-coding RNA signature in head and neck squamous cell carcinoma. PMID:26057471
Profiling circulating microRNAs in maternal serum and plasma. PMID:26044778
Dietary MicroRNA Database (DMD): An Archive Database and Analytic Tool for Food-Borne microRNAs. PMID:26030752
High-throughput sequencing reveals altered expression of hepatic microRNAs in nonalcoholic fatty liver disease-related fibrosis. PMID:26001595
Unraveling novel TF-miRNA regulatory crosstalk in metastasis of Soft Tissue Sarcoma. PMID:25984907
Profiling age-related epigenetic markers of stomach adenocarcinoma in young and old subjects. PMID:25983541
Integrated microRNA, mRNA, and protein expression profiling reveals microRNA regulatory networks in rat kidney treated with a carcinogenic dose of aristolochic acid. PMID:25952319
Analysis of Glioblastoma Patients' Plasma Revealed the Presence of MicroRNAs with a Prognostic Impact on Survival and Those of Viral Origin. PMID:25950799
TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks. PMID:25943543
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. PMID:25940629
miR-141 and miR-200a, Revelation of New Possible Players in Modulation of Th17/Treg Differentiation and Pathogenesis of Multiple Sclerosis. PMID:25938517
Identification of active miRNA and transcription factor regulatory pathways in human obesity-related inflammation. PMID:25887648
An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online tools. PMID:25877638
Discover the molecular biomarker associated with cell death and extracellular matrix module in ovarian cancer. PMID:25861644
MicroRNA profiling of CD3+ CD56+ cytokine-induced killer cells. PMID:25826780
A comparative study of improvements Pre-filter methods bring on feature selection using microarray data. PMID:25825671
Diversity and functional convergence of small noncoding RNAs in male germ cell differentiation and fertilization. PMID:25805854
Genome-wide identification of microRNA expression quantitative trait loci. PMID:25791433
Prediction of desmoid tumor progression using miRNA expression profiling. PMID:25707497
A statistically inferred microRNA network identifies breast cancer target miR-940 as an actin cytoskeleton regulator. PMID:25673565
Dissecting the roles of microRNAs in coronary heart disease via integrative genomic analyses. PMID:25657313
Dysregulated MicroRNA Expression and Chronic Lung Allograft Rejection in Recipients With Antibodies to Donor HLA. PMID:25649290
Upregulation of gingival tissue miR-200b in obese periodontitis subjects. PMID:25630869
Comprehensive analysis of small RNA-seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana. PMID:25629686
Systems approach for the selection of micro-RNAs as therapeutic biomarkers of anti-EGFR monoclonal antibody treatment in colorectal cancer. PMID:25622824
Improving miRNA-mRNA interaction predictions. PMID:25559987
ReNE: a cytoscape plugin for regulatory network enhancement. PMID:25541727
The BRCA1/2-directed miRNA signature predicts a good prognosis in ovarian cancer patients with wild-type BRCA1/2. PMID:25537514
Clinically relevant genes and regulatory pathways associated with NRASQ61 mutations in melanoma through an integrative genomics approach. PMID:25537510
Altered microRNA expression profile in exosomes during osteogenic differentiation of human bone marrow-derived mesenchymal stem cells. PMID:25503309
White adipose tissue reference network: a knowledge resource for exploring health-relevant relations. PMID:25466819
Plasma microRNAs as potential noninvasive biomarkers for in-stent restenosis. PMID:25427155
Targeting of mutant p53-induced FoxM1 with thiostrepton induces cytotoxicity and enhances carboplatin sensitivity in cancer cells. PMID:25426548
Rapid neurogenesis through transcriptional activation in human stem cells. PMID:25403753
Potential microRNA-mediated oncogenic intercellular communication revealed by pan-cancer analysis. PMID:25403569
Hunting the needle in the haystack: a guide to obtain biologically meaningful microRNA targets. PMID:25383673
VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets. PMID:25380780
Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. PMID:25378249
Differential expression of circulating miRNAs in maternal plasma in pregnancies with fetal macrosomia. PMID:25370776
A microRNA upregulated in asthma airway T cells promotes TH2 cytokine production. PMID:25362490
The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease. PMID:25348401
Regression analysis of combined gene expression regulation in acute myeloid leukemia. PMID:25340776
EPO Mediates Neurotrophic, Neuroprotective, Anti-Oxidant, and Anti-Apoptotic Effects via Downregulation of miR-451 and miR-885-5p in SH-SY5Y Neuron-Like Cells. PMID:25324845
MicroRNA and gene networks in human diffuse large B-cell lymphoma. PMID:25289101
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. PMID:25281301
Dysregulation of cell cycle related genes and microRNAs distinguish the low- from high-risk of prostate cancer. PMID:25257132
RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model. PMID:25255322
Transcriptional profiling and dynamical regulation analysis identify potential kernel target genes of SCYL1-BP1 in HEK293T cells. PMID:25234469
Syngeneic cardiac and bone marrow stromal cells display tissue-specific microRNA signatures and microRNA subsets restricted to diverse differentiation processes. PMID:25232725
Serum miRNA profiling identifies miR-150/30a as potential biomarker for workers with damaged nerve fibers from carbon disulfide. PMID:25224332
TraceRNA: a web application for competing endogenous RNA exploration. PMID:25140062
Hsa-miR-195 targets PCMT1 in hepatocellular carcinoma that increases tumor life span. PMID:25119594
Genome-wide association study combined with biological context can reveal more disease-related SNPs altering microRNA target seed sites. PMID:25106527
Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types. PMID:25103560
Molecular pathogenesis of post-transplant acute kidney injury: assessment of whole-genome mRNA and miRNA profiles. PMID:25093671
MicroRNA-150 predicts a favorable prognosis in patients with epithelial ovarian cancer, and inhibits cell invasion and metastasis by suppressing transcriptional repressor ZEB1. PMID:25090005
Regulation of microRNA-mediated gene silencing by microRNA precursors. PMID:25086740
Pathway landscapes and epigenetic regulation in breast cancer and melanoma cell lines. PMID:25077705
3'LIFE: a functional assay to detect miRNA targets in high-throughput. PMID:25074381
Inferring the perturbed microRNA regulatory networks from gene expression data using a network propagation based method. PMID:25069957
The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations. PMID:25063298
A tri-component conservation strategy reveals highly confident microRNA-mRNA interactions and evolution of microRNA regulatory networks. PMID:25054916
MicroRNAs MiR-218, MiR-125b, and Let-7g predict prognosis in patients with oral cavity squamous cell carcinoma. PMID:25050621
An integrated analysis of miRNA, lncRNA, and mRNA expression profiles. PMID:25045664
The role of RNA structure at 5' untranslated region in microRNA-mediated gene regulation. PMID:25002673
Identification of featured biomarkers in different types of lung cancer with DNA microarray. PMID:25001589
Single Nucleotide Polymorphisms Associated with MicroRNA Regulation. PMID:24970168
Integrative identification of deregulated miRNA/TF-mediated gene regulatory loops and networks in prostate cancer. PMID:24968068
Regulation of gene expression by the BLM helicase correlates with the presence of G-quadruplex DNA motifs. PMID:24958861
Construction and analysis of regulatory genetic networks in cervical cancer based on involved microRNAs, target genes, transcription factors and host genes. PMID:24944708
A systematic review of microRNA expression profiling studies in human gastric cancer. PMID:24902858
Genome-wide survey of tissue-specific microRNA and transcription factor regulatory networks in 12 tissues. PMID:24889152
The influences of PRG-1 on the expression of small RNAs and mRNAs. PMID:24884413
Cooperative gene regulation by microRNA pairs and their identification using a computational workflow. PMID:24875477
Lessons from miR-143/145: the importance of cell-type localization of miRNAs. PMID:24875473
MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale. PMID:24867642
Unambiguous identification of miRNA:target site interactions by different types of ligation reactions. PMID:24857550
MiRNome and transcriptome aided pathway analysis in human regulatory T cells. PMID:24848933
Cross-platform toxicogenomics for the prediction of non-genotoxic hepatocarcinogenesis in rat. PMID:24830643
ToppMiR: ranking microRNAs and their mRNA targets based on biological functions and context. PMID:24829448
MicroRNA expression signatures and their correlation with clinicopathological features in glioblastoma multiforme. PMID:24817689
Non-inhibited miRNAs shape the cellular response to anti-miR. PMID:24810853
Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis. PMID:24809055
Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles. PMID:24803669
RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction. PMID:24803509
Integrating omics technologies to study pulmonary physiology and pathology at the systems level. PMID:24802001
Functional significance of macrophage-derived exosomes in inflammation and pain. PMID:24792623
Global analysis of miRNA gene clusters and gene families reveals dynamic and coordinated expression. PMID:24791000
The new world of RNAs. PMID:24764762
Investigating microRNA-target interaction-supported tissues in human cancer tissues based on miRNA and target gene expression profiling. PMID:24756070
Resources for functional genomics studies in Drosophila melanogaster. PMID:24653003
Network analysis of microRNAs, genes and their regulation in human bladder cancer. PMID:24649053
Sources of individual variability: miRNAs that predispose to neuropathic pain identified using genome-wide sequencing. PMID:24642266
A microRNA signature associated with early recurrence in breast cancer. PMID:24632820
miR-Synth: a computational resource for the design of multi-site multi-target synthetic miRNAs. PMID:24627222
Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer. PMID:24618011
A systematic in silico mining of the mechanistic implications and therapeutic potentials of estrogen receptor (ER)-α in breast cancer. PMID:24614816
Exploring the molecular causes of hepatitis B virus vaccination response: an approach with epigenomic and transcriptomic data. PMID:24612962
Inferring probabilistic miRNA-mRNA interaction signatures in cancers: a role-switch approach. PMID:24609385
NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes. PMID:24608173
Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach. PMID:24564296
A novel in silico reverse-transcriptomics-based identification and blood-based validation of a panel of sub-type specific biomarkers in lung cancer. PMID:24564251
Research on the typical miRNA and target genes in squamous cell carcinoma and adenocarcinoma of esophagus cancer with DNA microarray. PMID:24519530
Evolutionary comparisons of miRNA regulation system in six model organisms. PMID:24515651
Computational developments in microRNA-regulated protein-protein interactions. PMID:24507415
Atrial fibrillation and microRNAs. PMID:24478726
MicroRNAs as Haematopoiesis Regulators. PMID:24454381
Expression of 19 microRNAs in glioblastoma and comparison with other brain neoplasia of grades I-III. PMID:24412053
Coordinate microRNA-mediated regulation of protein complexes in prostate cancer. PMID:24391925
Transcriptome-wide discovery of microRNA binding sites in human brain. PMID:24389009
A pathway and network review on beta-adrenoceptor signaling and beta blockers in cardiac remodeling. PMID:24366330
Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks. PMID:24350678
A systems' biology approach to study microRNA-mediated gene regulatory networks. PMID:24350286
MicroRNAs: fundamental regulators of gene expression in major affective disorders and suicidal behavior? PMID:24298237
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. PMID:24297251
rSNPBase: a database for curated regulatory SNPs. PMID:24285297
Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures. PMID:24267745
Deep sequencing of small RNA repertoires in mice reveals metabolic disorders-associated hepatic miRNAs. PMID:24260478
UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks. PMID:24214987
A microRNA Link to Glioblastoma Heterogeneity. PMID:24213470
Reconstruction and analysis of transcription factor-miRNA co-regulatory feed-forward loops in human cancers using filter-wrapper feature selection. PMID:24205155
Study of differential effects of TGF-beta3/BMP2 on chondrogenesis in MSC cells by gene microarray data analysis. PMID:24198161
Nodes and biological processes identified on the basis of network analysis in the brain of the senescence accelerated mice as an Alzheimer's disease animal model. PMID:24194717
Comprehensive analysis of the functional microRNA-mRNA regulatory network identifies miRNA signatures associated with glioma malignant progression. PMID:24194606
HMDD v2.0: a database for experimentally supported human microRNA and disease associations. PMID:24194601
MicroRNA profiling in prostate cancer--the diagnostic potential of urinary miR-205 and miR-214. PMID:24167554
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways. PMID:24163105
Altered expression of miR-24, miR-126 and miR-365 does not affect viability of childhood TCF3-rearranged leukemia cells. PMID:24153013
microRNA and gene networks in human pancreatic cancer. PMID:24137477
In-Silico Algorithms for the Screening of Possible microRNA Binding Sites and Their Interactions. PMID:24082822
Imprinted and X-linked non-coding RNAs as potential regulators of human placental function. PMID:24081302
targetHub: a programmable interface for miRNA-gene interactions. PMID:24013925
Reconstructing dynamic microRNA-regulated interaction networks. PMID:23986498
Screening biomarkers of prostate cancer by integrating microRNA and mRNA microarrays. PMID:23984644
Regulation of huntingtin gene expression by miRNA-137, -214, -148a, and their respective isomiRs. PMID:23965969
MicroRNA expression changes during interferon-beta treatment in the peripheral blood of multiple sclerosis patients. PMID:23921681
MicroRNA-mediated regulation of T helper cell differentiation and plasticity. PMID:23907446
Large-scale screens of miRNA-mRNA interactions unveiled that the 3'UTR of a gene is targeted by multiple miRNAs. PMID:23874542
Search for signatures in miRNAs associated with cancer. PMID:23861569
Epigenetic silencing of monoallelically methylated miRNA loci in precancerous colorectal lesions. PMID:23857251
Fine-tuning of microRNA-mediated repression of mRNA by splicing-regulated and highly repressive microRNA recognition element. PMID:23819653
A novel biclustering algorithm for the discovery of meaningful biological correlations between microRNAs and their target genes. PMID:23815553
Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines. PMID:23809014
Characterizing genes with distinct methylation patterns in the context of protein-protein interaction network: application to human brain tissues. PMID:23776563
Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions. PMID:23771142
Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor. PMID:23724959
Disease-associated miRNA-mRNA networks in oral lichen planus. PMID:23723971
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis. PMID:23650583
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. PMID:23622248
Gene regulation, modulation, and their applications in gene expression data analysis. PMID:23573084
miRNA profiling discriminates types of rejection and injury in human renal allografts. PMID:23511211
MicroRNAs: an emerging science in cancer epigenetics. PMID:23497588
Pharmaco-miR: linking microRNAs and drug effects. PMID:23376192
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. PMID:23368412
miR-296-3p, miR-298-5p and their downstream networks are causally involved in the higher resistance of mammalian pancreatic α cells to cytokine-induced apoptosis as compared to β cells. PMID:23360399
mirTarPri: improved prioritization of microRNA targets through incorporation of functional genomics data. PMID:23326485
Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs. PMID:23281599
Genome-wide analysis of aberrantly expressed circulating miRNAs in patients with coal workers' pneumoconiosis. PMID:23275204
Dynamic evolution of mir-17-92 gene cluster and related miRNA gene families in vertebrates. PMID:23271119
An integrative analysis of cellular contexts, miRNAs and mRNAs reveals network clusters associated with antiestrogen-resistant breast cancer cells. PMID:23270413
Finding quasi-modules of human and viral miRNAs: a case study of human cytomegalovirus (HCMV). PMID:23206407
Building a robust a-p axis. PMID:23204917
Finding microRNA targets in plants: current status and perspectives. PMID:23200136
One decade of development and evolution of microRNA target prediction algorithms. PMID:23200135
Genome-wide screen for aberrantly expressed miRNAs reveals miRNA profile signature in breast cancer. PMID:23196705
MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate Cancer. PMID:23193399
MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting. PMID:23193297
SomamiR: a database for somatic mutations impacting microRNA function in cancer. PMID:23180788
MicroRNA sequence profiles of human kidney allografts with or without tubulointerstitial fibrosis. PMID:23131772
Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs. PMID:23110385
Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome. PMID:23049969
Molecular network analysis of human microRNA targetome: from cancers to Alzheimer's disease. PMID:23034144
Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression. PMID:22995832
Loss of microRNA-200a and c, and microRNA-203 expression at the invasive front of primary cutaneous melanoma is associated with increased thickness and disease progression. PMID:22956368
Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study. PMID:22929553
Antagonism pattern detection between microRNA and target expression in Ewing's sarcoma. PMID:22848594
Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs. PMID:22798498
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach. PMID:22759612
Detection of simultaneous group effects in microRNA expression and related target gene sets. PMID:22723856
Prioritizing cancer-related key miRNA-target interactions by integrative genomics. PMID:22705797
CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. PMID:22693220
Inferring the regulatory network behind a gene expression experiment. PMID:22693210
Large-scale analysis of microRNA evolution. PMID:22672736
MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). PMID:22618880
miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations. PMID:22583976
Mechanism(s) of alteration of micro RNA expressions in Huntington's disease and their possible contributions to the observed cellular and molecular dysfunctions in the disease. PMID:22581158
Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis. PMID:22549745
A crossroad of microRNAs and immediate early genes (IEGs) encoding oncogenic transcription factors in breast cancer. PMID:22327345
MIRNA-DISTILLER: A Stand-Alone Application to Compile microRNA Data from Databases. PMID:22303335
miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes. PMID:22276777
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. PMID:22135297
miRNEST database: an integrative approach in microRNA search and annotation. PMID:22135287
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. PMID:22080514
Network analysis of microRNAs and their regulation in human ovarian cancer. PMID:22050994
MultiMiTar: a novel multi objective optimization based miRNA-target prediction method. PMID:21949731
Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data. PMID:21821656
miRTar: an integrated system for identifying miRNA-target interactions in human. PMID:21791068
A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing. PMID:21731650
miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs. PMID:21441347
MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes. PMID:21436881
MicroRNAs: Meta-controllers of gene expression in synaptic activity emerge as genetic and diagnostic markers of human disease. PMID:21256154
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
http://dx.doi.org/10.1093/nar/gkz896

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gene silencing by mirna (microrna)
metasource: Fairsharing.org
version: FAIRsharing.org: miRTarBase; miRTarBase; DOI: https://doi.org/10.25504/FAIRsharing.f0bxfg; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

micro rna
metasource: Fairsharing.org
version: FAIRsharing.org: miRTarBase; miRTarBase; DOI: https://doi.org/10.25504/FAIRsharing.f0bxfg; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

experimental design and studies
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:21.276445

gene silencing by mirna (microrna) micro rna rna sequence functional, regulatory and non-coding rna microarray experiment molecular interactions, pathways and networks gene expression experimental design and studies

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