FAIRsharing.a0k4cd; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

DIANA-TarBase
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

TarBase v8
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:49.925308

tarbase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:49.925308

Other names: DIANA-TarBase, TarBase v8, tarbase

DIANA-TarBase is a reference database that indexes experimentally-supported microRNA (miRNA) targets. It integrates information on cell-type specific miRNA–gene regulation and includes miRNA-binding locations. The target data provided by DIANA-TarBase is supported by information on methodologies, cell types/tissues and experimental conditions.

Webpage:

http://www.microrna.gr/tarbase

Licence:

Name: DIANA-TarBase Licence Specifications
URL: http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=tarbasev8%2Fdownloaddataform

Publications: (6)

Publications
More detailed information about this field from each metasource.

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions
PMID: 29156006
metasource: Fairsharing.org
version: FAIRsharing.org: TarBase; TarBase; DOI: https://doi.org/10.25504/FAIRsharing.a0k4cd; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:49.925308

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions
PMID: 25416803
metasource: Fairsharing.org
version: FAIRsharing.org: TarBase; TarBase; DOI: https://doi.org/10.25504/FAIRsharing.a0k4cd; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
PMID: 22135297
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:49.925308

TarBase: A comprehensive database of experimentally supported animal microRNA targets
PMID: 16373484
metasource: Fairsharing.org
version: FAIRsharing.org: TarBase; TarBase; DOI: https://doi.org/10.25504/FAIRsharing.a0k4cd; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

The database of experimentally supported targets: a functional update of TarBase
PMID: 18957447
metasource: Fairsharing.org
version: FAIRsharing.org: TarBase; TarBase; DOI: https://doi.org/10.25504/FAIRsharing.a0k4cd; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

http://dx.doi.org/10.1093/nar/gkx1141
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions PubMed citations: 350.

350 articles citing: DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions

miRNA expression patterns in blood leukocytes and milk somatic cells of goats infected with small ruminant lentivirus (SRLV). PMID:35918371
Literature Mining of Disease Associated Noncoding RNA in the Omics Era. PMID:35897884
The role of miR-4469 as a tumor suppressor regulating inflammatory cell infiltration in colorectal cancer. PMID:35891783
In silico discovery of blood cell macromolecular associations. PMID:35879676
APE1 controls DICER1 expression in NSCLC through miR-33a and miR-130b. PMID:35876890
Urinary microRNAome in healthy cats and cats with pyelonephritis or other urological conditions. PMID:35857780
Prediction of Gastric Cancer-Related Genes Based on the Graph Transformer Network. PMID:35847949
Melatonin Alters the miRNA Transcriptome of Inflammasome Activation in Murine Microglial Cells. PMID:35842554
MicroRNA-21 guide and passenger strand regulation of adenylosuccinate lyase-mediated purine metabolism promotes transition to an EGFR-TKI-tolerant persister state. PMID:35840668
Regulation of VEGFA, KRAS, and NFE2L2 Oncogenes by MicroRNAs in Head and Neck Cancer. PMID:35806488
An Eleven-microRNA Signature Related to Tumor-Associated Macrophages Predicts Prognosis of Breast Cancer. PMID:35805995
Identification and Validation of Immune-Related Biomarker Gene and Construction of ceRNA Networks in Septic Cardiomyopathy. PMID:35782126
Identification of hub genes and regulatory networks in histologically unstable carotid atherosclerotic plaque by bioinformatics analysis. PMID:35773742
Expression and Regulatory Network Analysis of BICC1 for Aged Sca-1-Positive Bone Narrow Mesenchymal Stem Cells. PMID:35756494
Bioinformatics and System Biology Approach to Reveal the Interaction Network and the Therapeutic Implications for Non-Small Cell Lung Cancer Patients With COVID-19. PMID:35721149
Construction of the miRNA-mRNA Regulatory Networks and Explore Their Role in the Development of Lung Squamous Cell Carcinoma. PMID:35712349
GLUT1 Regulates the Tumor Immune Microenvironment and Promotes Tumor Metastasis in Pancreatic Adenocarcinoma via ncRNA-mediated Network. PMID:35711842
EnhFFL: A database of enhancer mediated feed-forward loops for human and mouse. PMID:35694152
Renal cancer stem cell-derived sEVs impair renal function by inducing renal cell ERS and apoptosis in mice. PMID:35693719
Omics-based integrated analysis identified IKZF2 as a biomarker associated with lupus nephritis. PMID:35688845
Detection of features predictive of microRNA targets by integration of network data. PMID:35679295
Identification of Two Exosomal miRNAs in Circulating Blood of Cancer Patients by Using Integrative Transcriptome and Network Analysis. PMID:35645340
OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics. PMID:35639733
Disclosing Potential Key Genes, Therapeutic Targets and Agents for Non-Small Cell Lung Cancer: Evidence from Integrative Bioinformatics Analysis. PMID:35632527
A Potential Target for Diabetic Vascular Damage: High Glucose-Induced Monocyte Extracellular Vesicles Impair Endothelial Cells by Delivering miR-142-5p. PMID:35615474
Fibrillin-1-regulated miR-122 has a critical role in thoracic aortic aneurysm formation. PMID:35606547
CircLIFR suppresses hepatocellular carcinoma progression by sponging miR-624-5p and inactivating the GSK-3β/β-catenin signaling pathway. PMID:35581180
Characterizing the Inflammatory Microenvironment in K14-HPV16 Transgenic Mice: Mast Cell Infiltration and MicroRNA Expression. PMID:35565345
Differential expression analysis of genes and long non-coding RNAs associated with KRAS mutation in colorectal cancer cells. PMID:35562390
A Computational Approach to Justifying Stratifin as a Candidate Diagnostic and Prognostic Biomarker for Pancreatic Cancer. PMID:35547358
RNA methylation-mediated LINC01559 suppresses colorectal cancer progression by regulating the miR-106b-5p/PTEN axis. PMID:35541914
Evolution of the ErbB gene family and analysis of regulators of Egfr expression during development of the rat spinal cord. PMID:35535900
Identification of miRNA-mRNA-TF regulatory networks in peripheral blood mononuclear cells of type 1 diabetes. PMID:35534828
MicroRNA-103a-3p enhances sepsis-induced acute kidney injury via targeting CXCL12. PMID:35510354
MicroRNA-mediated metabolic reprogramming of chimeric antigen receptor T cells. PMID:35507473
Schizophrenia Risk Mediated by microRNA Target Genes Overlapped by Genome-Wide Rare Copy Number Variation in 22q11.2 Deletion Syndrome. PMID:35495153
Upregulation of hsa_circ_0000977 participates in esophageal squamous cancer progression by sponging miR-874-3p. PMID:35476874
miR-195-5p Regulates Tight Junctions Expression via Claudin-2 Downregulation in Ulcerative Colitis. PMID:35453669
MicroRNA-Messenger RNA Regulatory Network Mediates Disrupted TH17 Cell Differentiation in Depression. PMID:35449567
circMAP3K4 regulates insulin resistance in trophoblast cells during gestational diabetes mellitus by modulating the miR-6795-5p/PTPN1 axis. PMID:35449053
Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD. PMID:35447890
Unravelling the distinct biological functions and potential therapeutic applications of TIMP2 in cancer. PMID:35436325
MicroRNAs Expression in Response to rhNGF in Epithelial Corneal Cells: Focus on Neurotrophin Signaling Pathway. PMID:35408969
miRNA-Mediated Low Expression of EPHX3 Is Associated with Poor Prognosis and Tumor Immune Infiltration in Head and Neck Squamous Cell Carcinomas. PMID:35401746
Key Disease Mechanisms Linked to Amyotrophic Lateral Sclerosis in Spinal Cord Motor Neurons. PMID:35370543
Hepatic adropin is regulated by estrogen and contributes to adverse metabolic phenotypes in ovariectomized mice. PMID:35364299
HSPB8 is a Potential Prognostic Biomarker that Correlates With Immune Cell Infiltration in Bladder Cancer. PMID:35330734
Interactions between miRNAs and Double-Strand Breaks DNA Repair Genes, Pursuing a Fine-Tuning of Repair. PMID:35328651
Key Genes and Biochemical Networks in Various Brain Regions Affected in Alzheimer's Disease. PMID:35326437
Human pancreatic islet miRNA-mRNA networks of altered miRNAs due to glycemic status. PMID:35310942
ArhGEF12 activates Rap1A and not RhoA in human dermal microvascular endothelial cells to reduce tumor necrosis factor-induced leak. PMID:35294066
Integrated multi-omics analysis reveals miR-20a as a regulator for metabolic colorectal cancer. PMID:35284668
Circ_0001174 facilitates osteosarcoma cell proliferation, migration, and invasion by targeting the miR-186-5p/MACC1 axis. PMID:35279159
Computational identification of host genomic biomarkers highlighting their functions, pathways and regulators that influence SARS-CoV-2 infections and drug repurposing. PMID:35277538
Computing microRNA-gene interaction networks in pan-cancer using miRDriver. PMID:35260634
Nanocarriers Call the Last Shot in the Treatment of Brain Cancers. PMID:35253549
Global analysis of miRNA-mRNA regulation pair in bladder cancer. PMID:35241117
Identification of Molecular Signatures and Candidate Drugs in Vascular Dementia by Bioinformatics Analyses. PMID:35221911
Integrated Analysis of circRNA-miRNA-mRNA ceRNA Network in Cardiac Hypertrophy. PMID:35211156
Identification of microRNAs Implicated in Modulating Senecionine-Induced Liver Toxicity in HepaRG Cells. PMID:35206009
Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data. PMID:35205414
MiR-182-5p Modulates Prostate Cancer Aggressive Phenotypes by Targeting EMT Associated Pathways. PMID:35204688
Placental miRNAs Targeting Cellular Stress Response Pathways Are Highly Expressed in Non-Hispanic Black People. PMID:35194759
Characterization of Cell Cycle-Related Competing Endogenous RNAs Using Robust Rank Aggregation as Prognostic Biomarker in Lung Adenocarcinoma. PMID:35186743
TRmir: A Comprehensive Resource for Human Transcriptional Regulatory Information of MiRNAs. PMID:35186035
Regulatory networks and 5' partner usage of miRNA host gene fusions in breast cancer. PMID:35182081
Characterization of the 3'UTR of the BTD gene and identification of regulatory elements and microRNAs. PMID:35167647
Evaluation of Controlled Ovarian Stimulation Protocols in Patients with Normal and Low Ovarian Reserve: Analyses of miRNAs and Selected Target Genes Involved in the Proliferation of Human Cumulus Cells and Oocyte Quality. PMID:35163635
Prediction and pan-cancer analysis of mammalian transcripts involved in target directed miRNA degradation. PMID:35137158
GPX7 Is Targeted by miR-29b and GPX7 Knockdown Enhances Ferroptosis Induced by Erastin in Glioma. PMID:35127512
Integrative Analysis of Long Non-coding RNAs, Messenger RNAs, and MicroRNAs Indicates the Neurodevelopmental Dysfunction in the Hippocampus of Gut Microbiota-Dysbiosis Mice. PMID:35087377
Overexpression of miR-200b-3p in Menstrual Blood-Derived Mesenchymal Stem Cells from Endometriosis Women. PMID:35075610
Hepatitis B core antigen modulates exosomal miR-135a to target vesicle-associated membrane protein 2 promoting chemoresistance in hepatocellular carcinoma. PMID:35068871
Sex differences in microRNA expression in first and third trimester human placenta†. PMID:35040930
An integrated in silico analysis highlighted angiogenesis regulating miRNA-mRNA network in PCOS pathophysiology. PMID:35032287
The Study of Cerebrospinal Fluid microRNAs in Spinal Cord Injury and Neurodegenerative Diseases: Methodological Problems and Possible Solutions. PMID:35008540
Renal Tissue miRNA Expression Profiles in ANCA-Associated Vasculitis-A Comparative Analysis. PMID:35008531
Distribution of alternative untranslated regions within the mRNA of the CELF1 splicing factor affects its expression. PMID:34996980
miRNA Combinatorics and its Role in Cell State Control-A Probabilistic Approach. PMID:34993232
Marine pollutant exposures and human milk extracellular vesicle-microRNAs in a mother-infant cohort from the Faroe Islands. PMID:34991248
Multiplex-Heterogeneous Network-Based Capturing Potential SNP "Switches" of Pathways Associating With Diverse Disease Characteristics of Asthma. PMID:34970542
SARS-CoV-2 expresses a microRNA-like small RNA able to selectively repress host genes. PMID:34903581
The impact of whole genome duplications on the human gene regulatory networks. PMID:34871317
Potential Molecular Targets of Tenofovir Disoproxil Fumarate for Alleviating Chronic Liver Diseases via a Non-Antiviral Effect in a Normal Mouse Model. PMID:34869594
A Novel Risk-Score Model With Eight MiRNA Signatures for Overall Survival of Patients With Lung Adenocarcinoma. PMID:34868213
Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data. PMID:34856921
Advances in Non-Coding RNA Sequencing. PMID:34842804
Loss of Endothelial Barrier Function in the Inflammatory Setting: Indication for a Cytokine-Mediated Post-Transcriptional Mechanism by Virtue of Upregulation of miRNAs miR-29a-3p, miR-29b-3p, and miR-155-5p. PMID:34831066
MicroRNA Sequencing Analysis in Obstructive Sleep Apnea and Depression: Anti-Oxidant and MAOA-Inhibiting Effects of miR-15b-5p and miR-92b-3p through Targeting PTGS1-NF-κB-SP1 Signaling. PMID:34829725
In silico Methods for Identification of Potential Therapeutic Targets. PMID:34826045
Circulating miRNAs associated with bone mineral density in healthy adult baboons. PMID:34799865
Identification of Cross-Pathway Connections via Protein-Protein Interactions Linked to Altered States of Metabolic Enzymes in Cervical Cancer. PMID:34790674
Hub microRNAs and genes in the development of atrial fibrillation identified by weighted gene co-expression network analysis. PMID:34781940
CD4+ T-Cell Activation Prompts Suppressive Function by Extracellular Vesicle-Associated MicroRNAs. PMID:34778265
MicroRNA-mediated calcineurin signaling activation induces CCL2, CCL3, CCL5, IL8, and chemotactic activities in 4,4'-methylene diphenyl diisocyanate exposed macrophages. PMID:34775880
A Combined mRNA- and miRNA-Sequencing Approach Reveals miRNAs as Potential Regulators of the Small Intestinal Transcriptome in Celiac Disease. PMID:34768815
The Clinical Significance and Immunization of MSMO1 in Cervical Squamous Cell Carcinoma Based on Bioinformatics Analysis. PMID:34759952
MicroRNA-mediated bioengineering for climate-resilience in crops. PMID:34747296
Mechanistic Insight Into the Regulation of Immune-Related Genes Expression in Autism Spectrum Disorder. PMID:34746237
Putative MicroRNA-mRNA Networks Upon Mdfi Overexpression in C2C12 Cell Differentiation and Muscle Fiber Type Transformation. PMID:34738011
The miRNA Profile of Inflammatory Colorectal Tumors Identify TGF-β as a Companion Target for Checkpoint Blockade Immunotherapy. PMID:34722540
Transcriptomic and Network Meta-Analysis of Frontotemporal Dementias. PMID:34720873
Lung cancer cells expressing a shortened CDK16 3'UTR escape senescence through impaired miR-485-5p targeting. PMID:34687270
Lung Fibrosis Is Improved by Extracellular Vesicles from IFNγ-Primed Mesenchymal Stromal Cells in Murine Systemic Sclerosis. PMID:34685707
MiR-106b-5p: A Master Regulator of Potential Biomarkers for Breast Cancer Aggressiveness and Prognosis. PMID:34681793
Construction and Investigation of Competing Endogenous RNA Networks and Candidate Genes Involved in SARS-CoV-2 Infection. PMID:34675627
Expression of cytokines in dairy cattle mammary gland parenchyma during chronic staphylococcal infection. PMID:34663465
Time-ordered dysregulated ceRNA networks reveal disease progression and diagnostic biomarkers in ischemic and dilated cardiomyopathy. PMID:34657123
STAT1: a novel candidate biomarker and potential therapeutic target of the recurrent aphthous stomatitis. PMID:34649540
TSMDA: Target and symptom-based computational model for miRNA-disease-association prediction. PMID:34631283
Targeting the miRNA-155/TNFSF10 network restrains inflammatory response in the retina in a mouse model of Alzheimer's disease. PMID:34611142
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases. PMID:34601390
RNA-RNA interactions between SARS-CoV-2 and host benefit viral development and evolution during COVID-19 infection. PMID:34585235
Modulation of Cellular MicroRNA by HIV-1 in Burkitt Lymphoma Cells-A Pathway to Promoting Oncogenesis. PMID:34573283
Circulating MicroRNAs Highly Correlate to Expression of Cartilage Genes Potentially Reflecting OA Susceptibility-Towards Identification of Applicable Early OA Biomarkers. PMID:34572569
Small Non-coding RNA Expression Following Respiratory Syncytial Virus or Measles Virus Infection of Neuronal Cells. PMID:34539595
Construction of Potential Gene Expression and Regulation Networks in Prostate Cancer Using Bioinformatics Tools. PMID:34512870
CancerMIRNome: an interactive analysis and visualization database for miRNome profiles of human cancer. PMID:34500460
NOCICEPTRA: Gene and microRNA Signatures and Their Trajectories Characterizing Human iPSC-Derived Nociceptor Maturation. PMID:34486248
DIANA-miTED: a microRNA tissue expression database. PMID:34469540
Development of a prognostic prediction model based on microRNA-1269a in esophageal cancer. PMID:34457197
In silico identification of MicroRNAs targeting the key nucleator of stress granules, G3BP: Promising therapeutics for SARS-CoV-2 infection. PMID:34456603
Downregulation of LINC02615 Is Correlated with The Breast Cancer Progress: A Novel Biomarker for Differential Identification of Breast Cancer Tissues. PMID:34455716
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Computational Detection of MicroRNA Targets. PMID:34432280
Elevated Expression of MiR-17 in Microglia of Alzheimer's Disease Patients Abrogates Autophagy-Mediated Amyloid-β Degradation. PMID:34426734
Characterizing miRNA-lncRNA Interplay. PMID:34417757
Two Similar Signatures for Predicting the Prognosis and Immunotherapy Efficacy of Stomach Adenocarcinoma Patients. PMID:34414187
Multi-Omics Data Fusion for Cancer Molecular Subtyping Using Sparse Canonical Correlation Analysis. PMID:34367231
PlasmiR: A Manual Collection of Circulating microRNAs of Prognostic and Diagnostic Value. PMID:34359584
Pre-pregnancy BMI-associated miRNA and mRNA expression signatures in the placenta highlight a sexually-dimorphic response to maternal underweight status. PMID:34344912
Identifying molecular insight of synergistic complexities for SARS-CoV-2 infection with pre-existing type 2 diabetes. PMID:34340124
A Deep-Learning Model With the Attention Mechanism Could Rigorously Predict Survivals in Neuroblastoma. PMID:34336652
Placental miR-3940-3p Is Associated With Maternal Insulin Resistance in Late Pregnancy. PMID:34333643
Integrated microRNA and mRNA signatures associated with overall survival in epithelial ovarian cancer. PMID:34320033
Identification of Prognostic and Chemopredictive microRNAs for Non-Small-Cell Lung Cancer by Integrating SEER-Medicare Data. PMID:34299277
CircTMC5 promotes gastric cancer progression and metastasis by targeting miR-361-3p/RABL6. PMID:34296378
Comprehensive Profiling of Hypoxia-Related miRNAs Identifies miR-23a-3p Overexpression as a Marker of Platinum Resistance and Poor Prognosis in High-Grade Serous Ovarian Cancer. PMID:34283087
LncRNA NEAT1 mediates intestinal inflammation by regulating TNFRSF1B. PMID:34268386
KIF23 promotes triple negative breast cancer through activating epithelial-mesenchymal transition. PMID:34268078
hsa_circ_0060975 is highly expressed and predicts a poor prognosis in gastric cancer. PMID:34257727
Diagnostic potential of extracellular vesicle-associated microRNA-10b and tumor markers for lung adenocarcinoma. PMID:34257722
Identifying ceRNA Networks Associated With the Susceptibility and Persistence of Atrial Fibrillation Through Weighted Gene Co-Expression Network Analysis. PMID:34249084
LncRNA HAND2-AS1 exerts anti-oncogenic effects on bladder cancer via restoration of RARB as a sponge of microRNA-146. PMID:34238300
A Non-Coding RNA Network Involved in KSHV Tumorigenesis. PMID:34222014
VECTOR: An Integrated Correlation Network Database for the Identification of CeRNA Axes in Uveal Melanoma. PMID:34210067
MicroRNAs Targeting HIF-2α, VEGFR1 and/or VEGFR2 as Potential Predictive Biomarkers for VEGFR Tyrosine Kinase and HIF-2α Inhibitors in Metastatic Clear-Cell Renal Cell Carcinoma. PMID:34205829
An Overview of the Computational Models Dealing with the Regulatory ceRNA Mechanism and ceRNA Deregulation in Cancer. PMID:34165714
LncRNAs and Available Databases. PMID:34160796
Identification of a Competing Endogenous RNA Network Related to Immune Signature in Lung Adenocarcinoma. PMID:34149807
Interrelationship between miRNA and splicing factors in pancreatic ductal adenocarcinoma. PMID:34057028
emiRIT: a text-mining-based resource for microRNA information. PMID:34048547
MicroRNA in combination with HER2-targeting drugs reduces breast cancer cell viability in vitro. PMID:34035375
Dynamic alteration in miRNA and mRNA expression profiles at different stages of chronic arsenic exposure-induced carcinogenesis in a human cell culture model of skin cancer. PMID:34032870
Stromal-Derived Extracellular Vesicles Suppress Proliferation of Bone Metastatic Cancer Cells Mediated by ERK2. PMID:34021072
Genome-wide analysis of primary microRNA expression using H3K36me3 ChIP-seq data. PMID:33995896
HNF1A regulates colorectal cancer progression and drug resistance as a downstream of POU5F1. PMID:33990627
Dysregulation of miR-381-3p and miR-23b-3p in skeletal muscle could be a possible estimator of early post-mortem interval in rats. PMID:33986977
Upregulated anti-angiogenic miR-424-5p in type 1 diabetes (model of subclinical cardiovascular disease) correlates with endothelial progenitor cells, CXCR1/2 and other parameters of vascular health. PMID:33985567
Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways. PMID:33982668
Profiling of Primary and Mature miRNA Expression in Atherosclerosis-Associated Cell Types. PMID:33980036
Variability in porcine microRNA genes and its association with mRNA expression and lipid phenotypes. PMID:33947333
Targeting microRNA-mediated gene repression limits adipogenic conversion of skeletal muscle mesenchymal stromal cells. PMID:33945794
Exon-Intron Differential Analysis Reveals the Role of Competing Endogenous RNAs in Post-Transcriptional Regulation of Translation. PMID:33923420
Key Disease Mechanisms Linked to Alzheimer's Disease in the Entorhinal Cortex. PMID:33920138
miRNA activity inferred from single cell mRNA expression. PMID:33911110
The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature. PMID:33903708
Expression analysis of progesterone‑regulated miRNAs in cells derived from human glioblastoma. PMID:33899118
MicroRNAs as theranostic markers in cardiac allograft transplantation: from murine models to clinical practice. PMID:33897899
MicroRNAs in amniotic fluid and maternal blood plasma associated with sex determination and early gonad differentiation in cattle†. PMID:33889937
Bioinformatic Analysis of Key Genes and Pathways Related to Keloids. PMID:33860039
LINC01303 promotes the proliferation and migration of laryngeal carcinoma by regulating miR-200c/TIMP2 axis. PMID:33841686
Identification of miRNA-Mediated Subpathways as Prostate Cancer Biomarkers Based on Topological Inference in a Machine Learning Process Using Integrated Gene and miRNA Expression Data. PMID:33841512
Identification of co-expression network correlated with different periods of adipogenic and osteogenic differentiation of BMSCs by weighted gene co-expression network analysis (WGCNA). PMID:33836657
Integrated miRNA-Seq and mRNA-Seq Study to Identify miRNAs Associated With Alzheimer's Disease Using Post-mortem Brain Tissue Samples. PMID:33833661
Identification of MiR-93-5p Targeted Pathogenic Markers in Acute Myeloid Leukemia through Integrative Bioinformatics Analysis and Clinical Validation. PMID:33828590
Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid Differentiation and Primary from Immortalized Erythroid Cells. PMID:33807258
MicroRNAs Possibly Involved in the Development of Bone Metastasis in Clear-Cell Renal Cell Carcinoma. PMID:33800656
Nanocell-mediated delivery of miR-34a counteracts temozolomide resistance in glioblastoma. PMID:33765907
DUOX2 As a Potential Prognostic Marker which Promotes Cell Motility and Proliferation in Pancreatic Cancer. PMID:33748270
Identification and Validation of a Novel Immune-Related Four-lncRNA Signature for Lung Adenocarcinoma. PMID:33708243
Integrative approaches for analysis of mRNA and microRNA high-throughput data. PMID:33680358
MicroRNA expression profile in bovine mammary gland parenchyma infected by coagulase-positive or coagulase-negative staphylococci. PMID:33676576
Identification and Validation of New Cancer Stem Cell-Related Genes and Their Regulatory microRNAs in Colorectal Cancerogenesis. PMID:33670246
Deletion of hippocampal Glucocorticoid receptors unveils sex-biased microRNA expression and neuronal morphology alterations in mice. PMID:33665240
Circ-AFF2/miR-650/CNP axis promotes proliferation, inflammatory response, migration, and invasion of rheumatoid arthritis synovial fibroblasts. PMID:33653372
MicroRNAs and Long Non-Coding RNAs as Regulators of NANOG Expression in the Development of Oral Squamous Cell Carcinoma. PMID:33643897
A Comparative Analysis of Reactive Müller Glia Gene Expression After Light Damage and microRNA-Depleted Müller Glia-Focus on microRNAs. PMID:33614628
Formononetin ameliorates the drug resistance of Taxol resistant triple negative breast cancer by inhibiting autophagy. PMID:33594306
miR-193a-3p Mediates Placenta Accreta Spectrum Development by Targeting EFNB2 via Epithelial-Mesenchymal Transition Pathway Under Decidua Defect Conditions. PMID:33585562
MicroRNA Profiling of HL-1 Cardiac Cells-Derived Extracellular Vesicles. PMID:33573156
The Coding and Small Non-coding Hippocampal Synaptic RNAome. PMID:33569760
microRNA let-7i-5p mediates the relationship between muscle fat infiltration and neck pain disability following motor vehicle collision: a preliminary study. PMID:33542428
Reporting on the Role of miRNAs and Affected Pathways on the Molecular Backbone of Ovarian Insufficiency: A Systematic Review and Critical Analysis Mapping of Future Research. PMID:33511114
MicroRNA miR-330-3p suppresses the progression of ovarian cancer by targeting RIPK4. PMID:33487072
A set of miRNAs predicts T2DM remission in patients with coronary heart disease: from the CORDIOPREV study. PMID:33425484
Genomic Profiling and Functional Analysis of let-7c miRNA-mRNA Interactions Identify SOX13 to Be Involved in Invasion and Progression of Pancreatic Cancer. PMID:33424970
Bioinformatics analysis of common key genes and pathways of intracranial, abdominal, and thoracic aneurysms. PMID:33407182
Fifteen-MiRNA-Based Signature Is a Reliable Prognosis-Predicting Tool for Prostate Cancer Patients. PMID:33390797
COPD-associated miR-145-5p is downregulated in early-decline FEV1 trajectories in childhood asthma. PMID:33385444
Effect of let-7c on the PI3K/Akt/FoxO signaling pathway in hepatocellular carcinoma. PMID:33376529
miRNA Targets: From Prediction Tools to Experimental Validation. PMID:33374478
Tribbles-1 Expression and Its Function to Control Inflammatory Cytokines, Including Interleukin-8 Levels are Regulated by miRNAs in Macrophages and Prostate Cancer Cells. PMID:33329538
Expression of Extracellular Matrix-Related Genes and Their Regulatory microRNAs in Problematic Colorectal Polyps. PMID:33322258
A Comparison of Gene Expression Changes in the Blood of Individuals Consuming Diets Supplemented with Olives, Nuts or Long-Chain Omega-3 Fatty Acids. PMID:33302351
Detection of urinary miRNAs for diagnosis of clear cell renal cell carcinoma. PMID:33277569
Informatics Inference of Exercise-Induced Modulation of Brain Pathways Based on Cerebrospinal Fluid Micro-RNAs in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. PMID:33274349
Long Intergenic Non-Protein Coding RNA 01089 Weakens Tumor Proliferation, Migration, and Invasion by Sponging miR-3187-3p in Non-Small Cell Lung Cancer. PMID:33269007
MicroRNAs from Extracellular Vesicles Secreted by Bovine Embryos as Early Biomarkers of Developmental Competence. PMID:33255183
DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. PMID:33245765
Identification of Two Novel Circular RNAs Deriving from BCL2L12 and Investigation of Their Potential Value as a Molecular Signature in Colorectal Cancer. PMID:33238574
Therapeutic potential of miRNAs targeting SARS-CoV-2 host cell receptor ACE2. PMID:33224734
Upregulation of ERCC6L is associated with tumor progression and unfavorable prognosis in hepatocellular carcinoma. PMID:33209494
Biomarker Discovery for the Carcinogenic Heterogeneity Between Colon and Rectal Cancers Based on lncRNA-Associated ceRNA Network Analysis. PMID:33194594
ASDmiR: A Stepwise Method to Uncover miRNA Regulation Related to Autism Spectrum Disorder. PMID:33173536
A compound downregulation of SRRM2 and miR-27a-3p with upregulation of miR-27b-3p in PBMCs of Parkinson's patients is associated with the early stage onset of disease. PMID:33171483
Bioinformatics Gene Analysis of Potential Biomarkers and Therapeutic Targets for Unstable Atherosclerotic Plaque-Related Stroke. PMID:33155176
Ensembl 2021. PMID:33137190
Identification of Early Recurrence Factors in Childhood and Adolescent B-Cell Acute Lymphoblastic Leukemia Based on Integrated Bioinformatics Analysis. PMID:33134167
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
A Survey of Regulatory Interactions Among RNA Binding Proteins and MicroRNAs in Cancer. PMID:33101370
Identification of MSC-AS1, a novel lncRNA for the diagnosis of laryngeal cancer. PMID:33079247
mRNA and miRNA expression profile reveals the role of miR-31 overexpression in neural stem cell. PMID:33067542
Integrative Analysis of Regulatory Module Reveals Associations of Microgravity with Dysfunctions of Multi-body Systems and Tumorigenesis. PMID:33066530
Comparison Study of Stem Cell-Derived Extracellular Vesicles for Enhanced Osteogenic Differentiation. PMID:33045930
Neuroprotective effects of human amniotic fluid stem cells-derived secretome in an ischemia/reperfusion model. PMID:33027557
Preoperative serum circulating microRNAs as potential biomarkers for chronic postoperative pain after total knee replacement. PMID:33021154
miRNASNP-v3: a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets. PMID:32990748
P2X7 Receptor-Dependent microRNA Expression Profile in the Brain Following Status Epilepticus in Mice. PMID:32982684
miRNAs expression signature potentially associated with lymphatic dissemination in locally advanced prostate cancer. PMID:32948204
CeRNA Network Analysis Representing Characteristics of Different Tumor Environments Based on 1p/19q Codeletion in Oligodendrogliomas. PMID:32906679
Computational Methods and Software Tools for Functional Analysis of miRNA Data. PMID:32872205
Characterization of BRCA1/2-Directed ceRNA Network Identifies a Novel Three-lncRNA Signature to Predict Prognosis and Chemo-Response in Ovarian Cancer Patients With Wild-Type BRCA1/2. PMID:32850807
MicroRNAs Modulate the Pathogenesis of Alzheimer's Disease: An In Silico Analysis in the Human Brain. PMID:32846925
Genetic deletion of microRNA-22 blunts the inflammatory transcriptional response to status epilepticus and exacerbates epilepsy in mice. PMID:32825833
Reciprocal Dysregulation of MiR-146b and MiR-451 Contributes in Malignant Phenotype of Follicular Thyroid Tumor. PMID:32824921
Downregulation of the let-7 family of microRNAs may promote insulin receptor/insulin-like growth factor signalling pathways in pancreatic ductal adenocarcinoma. PMID:32782579
Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application. PMID:32778133
A blood miRNA signature associates with sporadic Creutzfeldt-Jakob disease diagnosis. PMID:32769986
Altered miRNAs Expression Correlates With Gastroenteropancreatic Neuroendocrine Tumors Grades. PMID:32766159
Expression profiling of human milk derived exosomal microRNAs and their targets in HIV-1 infected mothers. PMID:32737406
Expression of NANOG and Its Regulation in Oral Squamous Cell Carcinoma. PMID:32733958
Functional Genomics of Epileptogenesis in Animal Models and Humans. PMID:32725455
Placental genomic and epigenomic signatures associated with infant birth weight highlight mechanisms involved in collagen and growth factor signaling. PMID:32721520
Integrated Transcriptome Analysis of Human Visceral Adipocytes Unravels Dysregulated microRNA-Long Non-coding RNA-mRNA Networks in Obesity and Colorectal Cancer. PMID:32714872
Multi-layered epigenetic regulation of IRS2 expression in the liver of obese individuals with type 2 diabetes. PMID:32710190
Effects of HTR1B 3' region polymorphisms and functional regions on gene expression regulation. PMID:32689951
RPmirDIP: Reciprocal Perspective improves miRNA targeting prediction. PMID:32678114
Circular RNA hsa-circ-0007766 modulates the progression of Gastric Carcinoma via miR-1233-3p/GDF15 axis. PMID:32669960
Dysregulated Expression of Apoptosis-Associated Genes and MicroRNAs and Their Involvement in Gastric Carcinogenesis. PMID:32583363
A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy. PMID:32581127
A novel prognostic signature of immune-related genes for patients with colorectal cancer. PMID:32564470
Long Non-Coding RNA 691 Regulated PTEN/PI3K/AKT Signaling Pathway in Osteosarcoma Through miRNA-9-5p. PMID:32547090
From the Argonauts Mythological Sailors to the Argonautes RNA-Silencing Navigators: Their Emerging Roles in Human-Cell Pathologies. PMID:32503341
Biomarker roles identification of miR-106 family for predicting the risk and poor survival of colorectal cancer. PMID:32493303
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology. PMID:32484539
Integrative In Silico Analysis of Genome-Wide DNA Methylation Profiles in Schizophrenia. PMID:32451840
Prediction of miRNA targets by learning from interaction sequences. PMID:32369518
Age-Related Changes in miRNA Expression Influence GSTZ1 and Other Drug Metabolizing Enzymes. PMID:32357971
The Role of miRNA for the Treatment of MGMT Unmethylated Glioblastoma Multiforme. PMID:32354046
ABC Efflux Transporters and the Circuitry of miRNAs: Kinetics of Expression in Cancer Drug Resistance. PMID:32340269
miRViz: a novel webserver application to visualize and interpret microRNA datasets. PMID:32319523
DES-ROD: Exploring Literature to Develop New Links between RNA Oxidation and Human Diseases. PMID:32308806
Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405
Overexpression of miR-10a-5p facilitates the progression of osteoarthritis. PMID:32283545
Prediction of the miRNA interactome - Established methods and upcoming perspectives. PMID:32211130
Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid. PMID:32210076
Identification of Aberrantly-Expressed Long Non-Coding RNAs in Osteoblastic Cells from Osteoporotic Patients. PMID:32204466
Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL. PMID:32188505
A preliminary computational outputs versus experimental results: Application of sTRAP, a biophysical tool for the analysis of SNPs of transcription factor-binding sites. PMID:32155318
A functional SNP in the synaptic SNAP25 gene is associated with impulsivity in a Colombian sample. PMID:32154047
Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism. PMID:32127416
Identification of Specific Long Non-Coding Ribonucleic Acid Signatures and Regulatory Networks in Prostate Cancer in Fine-Needle Aspiration Biopsies. PMID:32117463
MicroRNA 27a Is a Key Modulator of Cholesterol Biosynthesis. PMID:32071155
Altered Biogenesis and MicroRNA Content of Hippocampal Exosomes Following Experimental Status Epilepticus. PMID:32009885
A regulatory microRNA network controls endothelial cell phenotypic switch during sprouting angiogenesis. PMID:31976858
Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer. PMID:31964418
Intragenic MicroRNAs Autoregulate Their Host Genes in Both Direct and Indirect Ways-A Cross-Species Analysis. PMID:31963421
Phenotype-genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs. PMID:31942979
FilTar: using RNA-Seq data to improve microRNA target prediction accuracy in animals. PMID:31930382
Integrated analysis of a ceRNA network reveals potential prognostic lncRNAs in gastric cancer. PMID:31923354
Cardiosomal microRNAs Are Essential in Post-Infarction Myofibroblast Phenoconversion. PMID:31892162
Identification of circulating microRNA signatures as potential biomarkers in the serum of elk infected with chronic wasting disease. PMID:31873177
MiRNA-disease interaction prediction based on kernel neighborhood similarity and multi-network bidirectional propagation. PMID:31865912
Sputum Exosomal microRNAs Profiling Reveals Critical Pathways Modulated By Pseudomonas aeruginosa Colonization In Bronchiectasis. PMID:31819394
Clinical Significance And Integrative Analysis Of Kinesin Family Member 18B In Lung Adenocarcinoma. PMID:31807007
MicroRNA-34a Acutely Regulates Synaptic Efficacy in the Adult Dentate Gyrus In Vivo. PMID:31754996
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. PMID:31732741
Competing endogenous RNA (ceRNA) hypothetic model based on comprehensive analysis of long non-coding RNA expression in lung adenocarcinoma. PMID:31720124
A set of microRNAs coordinately controls tumorigenesis, invasion, and metastasis. PMID:31704767
Ensembl 2020. PMID:31691826
Therapeutic target database 2020: enriched resource for facilitating research and early development of targeted therapeutics. PMID:31691823
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database. PMID:31691816
Meta-Analysis of Gene Expression Changes in the Blood of Patients with Mild Cognitive Impairment and Alzheimer's Disease Dementia. PMID:31671574
Oncofertility: Pharmacological Protection and Immature Testicular Tissue (ITT)-Based Strategies for Prepubertal and Adolescent Male Cancer Patients. PMID:31640294
LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation. PMID:31617563
Epigenetics, Stem Cells, and Autophagy: Exploring a Path Involving miRNA. PMID:31615086
Construction of a lncRNA-miRNA-mRNA network to determine the regulatory roles of lncRNAs in psoriasis. PMID:31611939
MicroRNAs: Fine Tuners of Monocyte Heterogeneity. PMID:31608049
Transforming Growth Factor-β1 Selectively Recruits microRNAs to the RNA-Induced Silencing Complex and Degrades CFTR mRNA under Permissive Conditions in Human Bronchial Epithelial Cells. PMID:31590401
Identification of pivotal lncRNAs in papillary thyroid cancer using lncRNA-mRNA-miRNA ceRNA network analysis. PMID:31579562
Multi-omics analysis identifies mitochondrial pathways associated with anxiety-related behavior. PMID:31557158
Expression Profiling of Blood microRNAs 885, 361, and 17 in the Patients with the Parkinson's disease: Integrating Interaction Data to Uncover the Possible Triggering Age-Related Mechanisms. PMID:31551498
Understanding the Modus Operandi of MicroRNA Regulatory Clusters. PMID:31540501
X-chromosome-linked miR548am-5p is a key regulator of sex disparity in the susceptibility to mitochondria-mediated apoptosis. PMID:31511496
The role of microRNA-148a and downstream DLGAP1 on the molecular regulation and tumor progression on human glioblastoma. PMID:31477833
Integration of Bioinformatic Predictions and Experimental Data to Identify circRNA-miRNA Associations. PMID:31450634
Identification of a miRNA-mRNA network associated with lymph node metastasis in colorectal cancer. PMID:31423178
microRNA mir-598-3p mediates susceptibility to stress enhancement of remote fear memory. PMID:31416909
Urinary miRNA-27b-3p and miRNA-1228-3p correlate with the progression of Kidney Fibrosis in Diabetic Nephropathy. PMID:31388051
Mutual suppression between BHLHE40/BHLHE41 and the MIR301B-MIR130B cluster is involved in epithelial-to-mesenchymal transition of endometrial cancer cells. PMID:31384392
Evaluation of the Common Molecular Basis in Alzheimer's and Parkinson's Diseases. PMID:31366155
Meta-Analysis of Gene Expression and Identification of Biological Regulatory Mechanisms in Alzheimer's Disease. PMID:31333395
Abnormal Expression of DICER1 Leads to Dysregulation of Inflammatory Effectors in Human Synoviocytes. PMID:31275058
Long non-coding RNA FLJ33360 participates in ovarian cancer progression by sponging miR-30b-3p. PMID:31239715
Challenges in microRNAs' targetome prediction and validation. PMID:31169173
Interpreting the MicroRNA-15/107 family: interaction identification by combining network based and experiment supported approach. PMID:31151434
Genome-wide DNA methylation profiling of human diabetic peripheral neuropathy in subjects with type 2 diabetes mellitus. PMID:31132961
MiR-135a-5p Is Critical for Exercise-Induced Adult Neurogenesis. PMID:31130358
Circulating microRNAs miR-331 and miR-195 differentiate local luminal a from metastatic breast cancer. PMID:31077182
miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules. PMID:31077152
Spring is in the air: seasonal profiles indicate vernal change of miRNA activity. PMID:31035857
Circular RNA cMras inhibits lung adenocarcinoma progression via modulating miR-567/PTPRG regulatory pathway. PMID:31012177
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis. PMID:30931480
Exosome microRNA signatures in patients with complex regional pain syndrome undergoing plasma exchange. PMID:30871575
Age-related gene and miRNA expression changes in airways of healthy individuals. PMID:30842487
Association of High miR-182 Levels with Low-Risk Prostate Cancer. PMID:30703341
Epigenetic signature for attention-deficit/hyperactivity disorder: identification of miR-26b-5p, miR-185-5p, and miR-191-5p as potential biomarkers in peripheral blood mononuclear cells. PMID:30568281
Toll-Like Receptor and miRNA-let-7e Expression Alter the Inflammatory Response in Leishmania amazonensis-Infected Macrophages. PMID:30555476
Decreased levels of miR-28-5p and miR-361-3p and increased levels of insulin-like growth factor 1 mRNA in mononuclear cells from patients with hereditary hemorrhagic telangiectasia 1. PMID:30512964
LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments. PMID:30476305
Epstein-Barr Virus Infection of Cell Lines Derived from Diffuse Large B-Cell Lymphomas Alters MicroRNA Loading of the Ago2 Complex. PMID:30429351
miRNA arm switching identifies novel tumour biomarkers. PMID:30425004
miRBase: from microRNA sequences to function. PMID:30423142
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
Let-7 microRNA as a potential therapeutic target with implications for immunotherapy. PMID:30328720
Phosphodiesterase 7B/microRNA-200c relationship regulates triple-negative breast cancer cell growth. PMID:30209363
microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions. PMID:30190538
MicroRNA-17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta-analysis, and bioinformatics. PMID:30186751
Analysis of the Cancer Genome Atlas Data Reveals Novel Putative ncRNAs Targets in Hepatocellular Carcinoma. PMID:30046591
Glucose-sensing microRNA-21 disrupts ROS homeostasis and impairs antioxidant responses in cellular glucose variability. PMID:30037352
The Complex Interaction of Mitochondrial Genetics and Mitochondrial Pathways in Psychiatric Disease. PMID:29998118
Trends in the development of miRNA bioinformatics tools. PMID:29982332
OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space. PMID:29878180
Expanding the horizons of microRNA bioinformatics. PMID:29871895
Effects of green tea on miRNA and microbiome of oral epithelium. PMID:29651001
Roles of NF-κB Signaling in the Regulation of miRNAs Impacting on Inflammation in Cancer. PMID:29601548
Analysis of microRNA and Gene Expression Profiles in Alzheimer's Disease: A Meta-Analysis Approach. PMID:29555910
Small-RNA sequencing identifies dynamic microRNA deregulation during skeletal muscle lineage progression. PMID:29523801
The 2018 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:29316735
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions PubMed citations: 346.

346 articles citing: DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions

Intraabdominal sporadic desmoid tumors and inflammation: an updated literature review and presentation and insights on pathogenesis of synchronous sporadic mesenteric desmoid tumors occurring after surgery for necrotizing pancreatitis. PMID:35913675
Comparative Profiling of Circulating Exosomal Small RNAs Derived From Peruvian Patients With Tuberculosis and Pulmonary Adenocarcinoma. PMID:35846752
Diagnostic and prognostic potential clustered miRNAs in bladder cancer. PMID:35845108
An integrated approach to understand fluid shear stress-driven and reactive oxygen species-mediated metastasis of colon adenocarcinoma through mRNA-miRNA-lncRNA-circRNA networks. PMID:35831469
Syringin exerts anti-breast cancer effects through PI3K-AKT and EGFR-RAS-RAF pathways. PMID:35794555
Breast milk-derived extracellular vesicle miRNAs are associated with maternal asthma and atopy. PMID:35638388
enrichMiR predicts functionally relevant microRNAs based on target collections. PMID:35609985
Biological networks in gestational diabetes mellitus: insights into the mechanism of crosstalk between long non-coding RNA and N6-methyladenine modification. PMID:35505296
A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans. PMID:35463453
MicroRNA-132 is overexpressed in fetuses with late-onset fetal growth restriction. PMID:35317418
Target-Dependent Coordinated Biogenesis of Secondary MicroRNAs by miR-146a Balances Macrophage Activation Processes. PMID:35311564
MiR-363-3p promotes prostate cancer tumor progression by targeting Dickkopf 3. PMID:35303365
First trimester plasma microRNAs levels predict Matsuda Index-estimated insulin sensitivity between 24th and 29th week of pregnancy. PMID:35246451
Characterization of the microRNA transcriptomes and proteomics of cochlear tissue-derived small extracellular vesicles from mice of different ages after birth. PMID:35218422
Distinct Adipogenic and Fibrogenic Differentiation Capacities of Mesenchymal Stromal Cells from Pancreas and White Adipose Tissue. PMID:35216219
TRmir: A Comprehensive Resource for Human Transcriptional Regulatory Information of MiRNAs. PMID:35186035
Identification of the Association Between Toll-Like Receptors and T-Cell Activation in Takayasu's Arteritis. PMID:35126357
Current Understanding of Exosomal MicroRNAs in Glioma Immune Regulation and Therapeutic Responses. PMID:35095909
A deep learning approach to predict inter-omics interactions in multi-layer networks. PMID:35081903
Human plasma pregnancy-associated miRNAs and their temporal variation within the first trimester of pregnancy. PMID:35031065
Circulating Nucleic Acid-Based Biomarkers of Type 2 Diabetes. PMID:35008723
Overexpression of microRNAs miR-25-3p, miR-185-5p and miR-132-3p in Late Onset Fetal Growth Restriction, Validation of Results and Study of the Biochemical Pathways Involved. PMID:35008715
Comprehensive Analysis of the Prognostic Values of the TRIM Family in Hepatocellular Carcinoma. PMID:35004288
Potential Molecular Mechanisms and Remdesivir Treatment for Acute Respiratory Syndrome Corona Virus 2 Infection/COVID 19 Through RNA Sequencing and Bioinformatics Analysis. PMID:34992355
NAPRT Expression Regulation Mechanisms: Novel Functions Predicted by a Bioinformatics Approach. PMID:34946971
Identifying and characterizing lincRNA genomic clusters reveals its cooperative functions in human cancer. PMID:34906173
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. PMID:34850920
Circular RNA-associated ceRNA network involved in HIF-1 signalling in triple-negative breast cancer: circ_0047303 as a potential key regulator. PMID:34791795
Profiling and Functional Analysis of microRNA Deregulation in Cancer-Associated Fibroblasts in Oral Squamous Cell Carcinoma Depicts an Anti-Invasive Role of microRNA-204 via Regulation of Their Motility. PMID:34769388
Prediction methods for microRNA targets in bilaterian animals: Toward a better understanding by biologists. PMID:34765096
Circulating miRNAs as Potential Biomarkers in Prostate Cancer Patients Undergoing Radiotherapy. PMID:34754245
Identification of lncRNA-associated competing endogenous RNA networks for occurrence and prognosis of gastric carcinoma. PMID:34704289
The MiR-320 Family Is Strongly Downregulated in Patients with COVID-19 Induced Severe Respiratory Failure. PMID:34638691
Exploration of alcohol use disorder-associated brain miRNA-mRNA regulatory networks. PMID:34601489
Identification of Key Regulators of Hepatitis C Virus-Induced Hepatocellular Carcinoma by Integrating Whole-Genome and Transcriptome Sequencing Data. PMID:34567091
MyoData: An expression knowledgebase at single cell/nucleus level for the discovery of coding-noncoding RNA functional interactions in skeletal muscle. PMID:34527188
The potential value of microRNA-145 for predicting prognosis in patients with ovarian cancer: A protocol for systematic review and meta-analysis. PMID:34397934
Identification of potential biomarkers in dengue via integrated bioinformatic analysis. PMID:34347790
Downregulation of miR-135b-5p Suppresses Progression of Esophageal Cancer and Contributes to the Effect of Cisplatin. PMID:34277424
The circulatory small non-coding RNA landscape in community-acquired pneumonia on intensive care unit admission. PMID:34272809
miR-30a/SOX4 Double Negative Feedback Loop is modulated by Disulfiram and regulates EMT and Stem Cell-like properties in Breast Cancer. PMID:34234874
Multi-layered control of PD-L1 expression in Epstein-Barr virus-associated gastric cancer. PMID:34212113
Construction of lncRNA-Mediated ceRNA Network for Investigating Immune Pathogenesis of Ischemic Stroke. PMID:34173933
Characterization of DNA Methylation and Screening of Epigenetic Markers in Polycystic Ovary Syndrome. PMID:34113617
Rheb-mTOR activation rescues Aβ-induced cognitive impairment and memory function by restoring miR-146 activity in glial cells. PMID:34094708
FGD5-AS1 Is a Hub lncRNA ceRNA in Hearts With Tetralogy of Fallot Which Regulates Congenital Heart Disease Genes Transcriptionally and Epigenetically. PMID:34046402
MiRNA-based model for predicting the TMB level in colon adenocarcinoma based on a LASSO logistic regression method. PMID:34032736
miRSM: an R package to infer and analyse miRNA sponge modules in heterogeneous data. PMID:33822666
Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial. PMID:33821793
Protection against Glucolipotoxicity by High Density Lipoprotein in Human PANC-1 Hybrid 1.1B4 Pancreatic Beta Cells: The Role of microRNA. PMID:33805674
Nanocell-mediated delivery of miR-34a counteracts temozolomide resistance in glioblastoma. PMID:33765907
Identification of potential and novel target genes in pituitary prolactinoma by bioinformatics analysis. PMID:33709028
IL-6 promotes MYC-induced B cell lymphomagenesis independent of STAT3. PMID:33651821
miTAR: a hybrid deep learning-based approach for predicting miRNA targets. PMID:33639834
Higher Circulating miR-199a-5p Indicates Poor Aerobic Exercise Capacity and Associates With Cardiovascular Dysfunction During Chronic Exposure to High Altitude. PMID:33633582
Bioinformatics analyses of significant genes, related pathways, and candidate diagnostic biomarkers and molecular targets in SARS-CoV-2/COVID-19. PMID:33553808
The Characterization of Sex Differences in Hypoglycemia-Induced Activation of HPA Axis on the Transcriptomic Level. PMID:33544274
Bioinformatics analysis of miRNA and mRNA expression profiles to reveal the key miRNAs and genes in osteoarthritis. PMID:33468167
Genome-wide study of salivary miRNAs identifies miR-423-5p as promising diagnostic and prognostic biomarker in oral squamous cell carcinoma. PMID:33456584
Integrated analyses of miRNA and mRNA profiles in leukocytes and serums in traditional Chinese medicine (TCM)-defined Pi-qi-deficiency syndrome and Pi-wei damp-heat syndrome resulting from chronic atrophic gastritis. PMID:33407671
Circulating MicroRNAs in Relation to Esophageal Adenocarcinoma Diagnosis and Survival. PMID:33403483
Identification of miRNAs as the Crosstalk in the Interaction between Neural Stem/Progenitor Cells and Endothelial Cells. PMID:33381243
Systematic Analysis of microRNA Biomarkers for Diagnosis, Prognosis, and Therapy in Patients With Clear Cell Renal Cell Carcinoma. PMID:33344224
Identification of potential mRNA panels for severe acute respiratory syndrome coronavirus 2 (COVID-19) diagnosis and treatment using microarray dataset and bioinformatics methods. PMID:33251083
DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. PMID:33245765
Circulating miRNA-181b-5p, miRNA-223-3p, miRNA-210-3p, let 7i-5p, miRNA-21-5p and miRNA-29a-3p in patients with localized scleroderma as potential biomarkers. PMID:33214624
Serum miRNAs associated with tumor-promoting cytokines in non-small cell lung cancer. PMID:33125430
Integrative Analyses of Genes Associated with Fulminant Type 1 Diabetes. PMID:33083497
Comparison Study of Stem Cell-Derived Extracellular Vesicles for Enhanced Osteogenic Differentiation. PMID:33045930
miRNA profiling of primate cervicovaginal lavage and extracellular vesicles reveals miR-186-5p as a potential antiretroviral factor in macrophages. PMID:33017084
Body mass index-associated molecular characteristics involved in tumor immune and metabolic pathways. PMID:32999719
A novel mechanism by which ACTA2-AS1 promotes cervical cancer progression: acting as a ceRNA of miR-143-3p to regulate SMAD3 expression. PMID:32774166
The miRNA-mRNA interactome of murine induced pluripotent stem cell-derived chondrocytes in response to inflammatory cytokines. PMID:32767602
Inhibition of miR-181a promotes midbrain neuronal growth through a Smad1/5-dependent mechanism: implications for Parkinson's disease. PMID:32714583
Identification of Molecular Mechanisms Related to Pig Fatness at the Transcriptome and miRNAome Levels. PMID:32485856
Circulating MicroRNAs Regulating DNA Damage Response and Responsiveness to Cisplatin in the Prognosis of Patients with Non-Small Cell Lung Cancer Treated with First-Line Platinum Chemotherapy. PMID:32438598
Data on miRNome changes in human cells exposed to nano- or ionic- forms of Cadmium. PMID:32426426
Large-Scale Profiling of Signaling Pathways Reveals a Distinct Demarcation between Normal and Extended Liver Resection. PMID:32392745
Expression of mRNAs, miRNAs, and lncRNAs in Human Trabecular Meshwork Cells Upon Mechanical Stretch. PMID:32392310
Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. PMID:32350386
LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer. PMID:32324747
MicroRNA‑126‑3p suppresses HeLa cell proliferation, migration and invasion, and increases apoptosis via the PI3K/PDK1/AKT pathway. PMID:32323808
A novel microRNA signature for pathological grading in lung adenocarcinoma based on TCGA and GEO data. PMID:32323746
Identification of the Potential Prognostic Markers from the miRNA-lncRNA-mRNA Interactions for Metastatic Renal Cancer via Next-Generation Sequencing and Bioinformatics. PMID:32316228
Identification of Autophagy-Associated Biomarkers and Corresponding Regulatory Factors in the Progression of Colorectal Cancer. PMID:32265986
Transcriptomic and Functional Screens Reveal MicroRNAs That Modulate Prostate Cancer Metastasis. PMID:32231998
Integrative Analysis of MicroRNA and Gene Interactions for Revealing Candidate Signatures in Prostate Cancer. PMID:32180804
Screening of potential miRNA therapeutics for the prevention of multi-drug resistance in cancer cells. PMID:32029822
miRgo: integrating various off-the-shelf tools for identification of microRNA-target interactions by heterogeneous features and a novel evaluation indicator. PMID:32001758
Integrated bioinformatics analysis of potential pathway biomarkers using abnormal proteins in clubfoot. PMID:31998564
miRNAs and lncRNAs in Echinococcus and Echinococcosis. PMID:31979099
miR-181a and miR-203 inhibit migration and invasion of laryngeal carcinoma cells by interacting with ATF2. PMID:31933727
Characterization of Holstein and Normande whole milk miRNomes highlights breed specificities. PMID:31889100
Analysis of Differentially Expressed Genes in Coronary Artery Disease by Integrated Microarray Analysis. PMID:31881747
CBNA: A control theory based method for identifying coding and non-coding cancer drivers. PMID:31790386
Insight into genetic regulation of miRNA in mouse brain. PMID:31722663
Circular RNA circGRAMD1B inhibits gastric cancer progression by sponging miR-130a-3p and regulating PTEN and p21 expression. PMID:31719211
Integrated Analysis of microRNA and mRNA Expression Profiles: An Attempt to Disentangle the Complex Interaction Network in Attention Deficit Hyperactivity Disorder. PMID:31652596
miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database. PMID:31647101
MiRNA expression patterns are associated with tumor mutational burden in lung adenocarcinoma. PMID:31646073
Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination. PMID:31644912
PopTargs: a database for studying population evolutionary genetics of human microRNA target sites. PMID:31608947
ITGB4 is a novel prognostic factor in colon cancer. PMID:31602273
Targeting Wnt/EZH2/microRNA-708 signaling pathway inhibits neuroendocrine differentiation in prostate cancer. PMID:31583122
A novel miRNA-4484 is up-regulated on microarray and associated with increased MMP-21 expression in serum of systemic sclerosis patients. PMID:31582779
Identification and analysis of survival-associated ceRNA triplets in prostate adenocarcinoma. PMID:31579415
Decreased expression of microRNAs targeting type-2 diabetes susceptibility genes in peripheral blood of patients and predisposed individuals. PMID:31559537
Associations of osteopontin and NT-proBNP with circulating miRNA levels in acute coronary syndrome. PMID:31530226
X-chromosome-linked miR548am-5p is a key regulator of sex disparity in the susceptibility to mitochondria-mediated apoptosis. PMID:31511496
Identification of lung-adenocarcinoma-related long non-coding RNAs by random walking on a competing endogenous RNA network. PMID:31475209
Differentially Expressed MiRNAs and tRNA Genes Affect Host Homeostasis During Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus Infections in Young Pigs. PMID:31428130
Integrative multi-omics analysis identifies a prognostic miRNA signature and a targetable miR-21-3p/TSC2/mTOR axis in metastatic pheochromocytoma/paraganglioma. PMID:31410193
miRDRN-miRNA disease regulatory network: a tool for exploring disease and tissue-specific microRNA regulatory networks. PMID:31404401
Screening miRNAs associated with resistance gemcitabine from exosomes in A549 lung cancer cells. PMID:31372037
Conditioned medium of primary lung cancer cells induces EMT in A549 lung cancer cell line by TGF-ß1 and miRNA21 cooperation. PMID:31344049
Identification of important invasion and proliferation related genes in adrenocortical carcinoma. PMID:31321566
Circulating miR-141-3p, miR-143-3p and miR-200c-3p are differentially expressed in colorectal cancer and advanced adenomas. PMID:31316774
miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer. PMID:31311505
Association of childhood traumatization and neuropsychiatric outcomes with altered plasma micro RNA-levels. PMID:31284290
Clustered microRNAs hsa-miR-221-3p/hsa-miR-222-3p and their targeted genes might be prognostic predictors for hepatocellular carcinoma. PMID:31258758
Detection of novel biomarkers for early detection of Non-Muscle-Invasive Bladder Cancer using Competing Endogenous RNA network analysis. PMID:31182759
Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome. PMID:31144574
Expression of disease-related miRNAs in white-matter lesions of progressive multiple sclerosis brains. PMID:31139683
Identification of Crucial Candidate Genes and Pathways in Glioblastoma Multiform by Bioinformatics Analysis. PMID:31137733
MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing. PMID:31065454
Up-regulation of tumor necrosis factor-α pathway survival genes and of the receptor TNFR2 in gastric cancer. PMID:31040894
Oncogenic Role of ZFAS1 lncRNA in Head and Neck Squamous Cell Carcinomas. PMID:31010087
Differential miRNA Expression in Ileal and Colonic Tissues Reveals an Altered Immunoregulatory Molecular Profile in Individuals With Crohn's Disease versus Healthy Subjects. PMID:31001642
Identification of Important Invasion-Related Genes in Non-functional Pituitary Adenomas. PMID:30982163
Global identification of functional microRNA-mRNA interactions in Drosophila. PMID:30967537
Functional Effects of let-7g Expression in Colon Cancer Metastasis. PMID:30959863
Dissecting heterogeneity in malignant pleural mesothelioma through histo-molecular gradients for clinical applications. PMID:30902996
Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction. PMID:30876399
Persistence of smoking induced non-small cell lung carcinogenesis by decreasing ERBB pathway-related microRNA expression. PMID:30868748
Sensory Neuropathy Affects Cardiac miRNA Expression Network Targeting IGF-1, SLC2a-12, EIF-4e, and ULK-2 mRNAs. PMID:30823517
Significant improvement of miRNA target prediction accuracy in large datasets using meta-strategy based on comprehensive voting and artificial neural networks. PMID:30813885
Comprehensive Investigation of miRNome Identifies Novel Candidate miRNA-mRNA Interactions Implicated in T-Cell Acute Lymphoblastic Leukemia. PMID:30763910
Integrative Analyses of Genes Associated with Subcutaneous Insulin Resistance. PMID:30678306
MiR-30c/PGC-1β protects against diabetic cardiomyopathy via PPARα. PMID:30635067
Relationship between Fusobacterium nucleatum, inflammatory mediators and microRNAs in colorectal carcinogenesis. PMID:30598580
miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. PMID:30598108
MicroRNA-374b induces endothelial-to-mesenchymal transition and early lesion formation through the inhibition of MAPK7 signaling. PMID:30565701
Differences in miRNA differential expression in whole blood between horses with sarcoid regression and progression. PMID:30506726
RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage. PMID:30504444
miRNomes involved in imparting thermotolerance to crop plants. PMID:30498670
miRTissue: a web application for the analysis of miRNA-target interactions in human tissues. PMID:30497361
MiR-192, miR-200c and miR-17 are fibroblast-mediated inhibitors of colorectal cancer invasion. PMID:30473751
Estrogen receptor β promotes bladder cancer growth and invasion via alteration of miR-92a/DAB2IP signals. PMID:30459405
Induction of apoptosis in ovarian cancer cells by miR-493-3p directly targeting AKT2, STK38L, HMGA2, ETS1 and E2F5. PMID:30392041
TransmiR v2.0: an updated transcription factor-microRNA regulation database. PMID:30371815
A miRNA Combination as Promising Biomarker for Hepatocellular Carcinoma Diagnosis: A Study Based on Bioinformatics Analysis. PMID:30310500
Framework for microRNA variant annotation and prioritization using human population and disease datasets. PMID:30302893
Abundantly Present miRNAs in Milk-Derived Extracellular Vesicles Are Conserved Between Mammals. PMID:30280098
miR-9-5p in Nephrectomy Specimens is a Potential Predictor of Primary Resistance to First-Line Treatment with Tyrosine Kinase Inhibitors in Patients with Metastatic Renal Cell Carcinoma. PMID:30201928
Impact of miRNA-mRNA Profiling and Their Correlation on Medulloblastoma Tumorigenesis. PMID:30195786
Neuronal microRNA regulation in Experimental Autoimmune Encephalomyelitis. PMID:30194392
microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions. PMID:30190538
Identification of Novel Target for Osteosarcoma by Network Analysis. PMID:30144309
Is miR-144 an effective inhibitor of PTEN mRNA: a controversy in breast cancer. PMID:30132256
Burkitt lymphoma-associated network construction and important network motif analysis. PMID:30127896
Endogenous transcripts control miRNA levels and activity in mammalian cells by target-directed miRNA degradation. PMID:30087332
Competing endogenous RNA analysis reveals the regulatory potency of circRNA_036186 in HNSCC. PMID:30066847
MiR-361-3p regulates ERK1/2-induced EMT via DUSP2 mRNA degradation in pancreatic ductal adenocarcinoma. PMID:30042387
Glucose-sensing microRNA-21 disrupts ROS homeostasis and impairs antioxidant responses in cellular glucose variability. PMID:30037352
miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts. PMID:30005074
Predicting Potential Drugs for Breast Cancer based on miRNA and Tissue Specificity. PMID:29989066
Enoxacin extends lifespan of C. elegans by inhibiting miR-34-5p and promoting mitohormesis. PMID:29986212
Using microRNA Networks to Understand Cancer. PMID:29949872
Circulating MicroRNAs: a Potential Biomarker for Cardiac Damage, Inflammatory Response, and Left Ventricular Function Recovery in Pediatric Viral Myocarditis. PMID:29916103
Integrative Analysis of Dysregulated lncRNA-Associated ceRNA Network Reveals Functional lncRNAs in Gastric Cancer. PMID:29912172
LncRNA expression profiling of BMSCs in osteonecrosis of the femoral head associated with increased adipogenic and decreased osteogenic differentiation. PMID:29904151
Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage. PMID:29884860
Exploring the microRNA profiles as potential diagnostic probes for oligo- and polymetastatic prognosis of lung metastasis(es) patients. PMID:29879044
The Glucose-Regulated MiR-483-3p Influences Key Signaling Pathways in Cancer. PMID:29867024
MicroRNA Expression Profiling in Psoriatic Arthritis. PMID:29850558
IMP3 Stabilization of WNT5B mRNA Facilitates TAZ Activation in Breast Cancer. PMID:29847788
Construction and analysis of a ceRNA‑ceRNA network reveals two potential prognostic modules regulated by hsa‑miR‑335‑5p in osteosarcoma. PMID:29845268
Integrated analysis of colorectal cancer microRNA datasets: identification of microRNAs associated with tumor development. PMID:29779016
Integrative Analysis Identifies Genetic Variants Associated With Autoimmune Diseases Affecting Putative MicroRNA Binding Sites. PMID:29755505
A gene interaction network‑based method to measure the common and heterogeneous mechanisms of gynecological cancer. PMID:29749503
Identification of Gastric Cancer-Related Circular RNA through Microarray Analysis and Bioinformatics Analysis. PMID:29744354
An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer. PMID:29744254
Circulating miRNAs as Putative Biomarkers of Exercise Adaptation in Endurance Horses. PMID:29740341
Genetic rearrangements, hotspot mutations, and microRNA expression in the progression of metastatic adenoid cystic carcinoma of the salivary gland. PMID:29731974
MicroRNA-542-3p suppresses tumor cell proliferation via targeting Smad2 inhuman osteosarcoma. PMID:29731864
MicroRNA-146a controls functional plasticity in γδ T cells by targeting NOD1. PMID:29728425
A novel plasma circular RNA circFARSA is a potential biomarker for non-small cell lung cancer. PMID:29722168
Integrated Characterization of MicroRNA and mRNA Transcriptome in Papillary Thyroid Carcinoma. PMID:29713312
Bioinformatics-based identification of potential microRNA biomarkers in frequent and non-frequent exacerbators of COPD. PMID:29713155
IFN-λ and microRNAs are important modulators of the pulmonary innate immune response against influenza A (H1N2) infection in pigs. PMID:29677213
Examining the Genetic Background of Porcine Muscle Growth and Development Based on Transcriptome and miRNAome Data. PMID:29659518
Micro-RNA Feedback Loops Modulating the Calcineurin/NFAT Signaling Pathway. PMID:29657261
Differential expression of microRNAs and other small RNAs in muscle tissue of patients with ALS and healthy age-matched controls. PMID:29618798
Macrophage microRNA-150 promotes pathological angiogenesis as seen in age-related macular degeneration. PMID:29618664
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. PMID:29617668
A computational biology approach of a genome-wide screen connected miRNAs to obesity and type 2 diabetes. PMID:29605715
Bioluminescence Imaging for Monitoring miR-200c Expression in Breast Cancer Cells and its Effects on Epithelial-Mesenchymal Transition Progress in Living Animals. PMID:29532351
Association of miR-548c-5p, miR-7-5p, miR-210-3p, miR-128-3p with recurrence in systemically untreated breast cancer. PMID:29507672
Transcriptome Profiling of Neovascularized Corneas Reveals miR-204 as a Multi-target Biotherapy Deliverable by rAAVs. PMID:29499946
Association of Genetic Variants of Small Non-Coding RNAs with Survival in Colorectal Cancer. PMID:29483812
Clinical significance of circulating microRNAs as markers in detecting and predicting congenital heart defects in children. PMID:29482591
Downregulation of MicroRNA eca-mir-128 in Seminal Exosomes and Enhanced Expression of CXCL16 in the Stallion Reproductive Tract Are Associated with Long-Term Persistence of Equine Arteritis Virus. PMID:29444949
Long Non-Coding RNA TUG1 Promotes Proliferation and Inhibits Apoptosis of Osteosarcoma Cells by Sponging miR-132-3p and Upregulating SOX4 Expression. PMID:29436190
Long non-coding RNA GAS5 and ZFAS1 are prognostic markers involved in translation targeted by miR-940 in prostate cancer. PMID:29416676
Comprehensive network of miRNA-induced intergenic interactions and a biological role of its core in cancer. PMID:29402894
Predictive relevance of miR-34a, miR-224 and miR-342 in patients with advanced squamous cell carcinoma of the lung undergoing palliative chemotherapy. PMID:29387235
Syndecan-1 Controls Lung Tumorigenesis by Regulating miRNAs Packaged in Exosomes. PMID:29355516
miR‑186, a serum microRNA, induces endothelial cell apoptosis by targeting SMAD6 in Kawasaki disease. PMID:29344637
Dengue virus causes changes of MicroRNA-genes regulatory network revealing potential targets for antiviral drugs. PMID:29301573
KH-type splicing regulatory protein is involved in esophageal squamous cell carcinoma progression. PMID:29254151
Differential Expression of Serum MicroRNAs Supports CD4⁺ T Cell Differentiation into Th2/Th17 Cells in Severe Equine Asthma. PMID:29231896
Altered microRNA profiles during early colon adenoma progression in a porcine model of familial adenomatous polyposis. PMID:29221194
Circulating MicroRNA Profiles Differ between Hyperglycemia and Euglycemia in Coronary Heart Disease Patients. PMID:29214180
mirDIP 4.1-integrative database of human microRNA target predictions. PMID:29194489
MicroRNA dynamics at the onset of primordial germ and somatic cell sex differentiation during mouse embryonic gonad development. PMID:29187591
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. PMID:29156006
Mitochondria Associated MicroRNA Expression Profiling of Heart Failure. PMID:29147650
Comprehensive microRNA-sequencing of exosomes derived from head and neck carcinoma cells in vitro reveals common secretion profiles and potential utility as salivary biomarkers. PMID:29137278
miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions. PMID:29126174
Comprehensive bioinformatics analysis of the characterization and determination underlying mechanisms of over-expression and co-expression of genes residing on 20q in colorectal cancer. PMID:29108255
MicroRNA-34a: A Key Regulator in the Hallmarks of Renal Cell Carcinoma. PMID:29104726
Evaluation of miRNA-196a2 and apoptosis-related target genes: ANXA1, DFFA and PDCD4 expression in gastrointestinal cancer patients: A pilot study. PMID:29091952
miRCarta: a central repository for collecting miRNA candidates. PMID:29036653
CCmiR: a computational approach for competitive and cooperative microRNA binding prediction. PMID:29028895
Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism. PMID:28986522
Screening differential circular RNA expression profiles reveals hsa_circ_0004018 is associated with hepatocellular carcinoma. PMID:28938566
MicroRNAs Clustered within the 14q32 Locus Are Associated with Endothelial Damage and Microparticle Secretion in Bicuspid Aortic Valve Disease. PMID:28928672
miR-217-5p induces apoptosis by directly targeting PRKCI, BAG3, ITGAV and MAPK1 in colorectal cancer cells. PMID:28905214
MiRNA-target network analysis identifies potential biomarkers for Traditional Chinese Medicine (TCM) syndrome development evaluation in hepatitis B caused liver cirrhosis. PMID:28887510
Expression and Regulatory Network Analysis of miR-140-3p, a New Potential Serum Biomarker for Autism Spectrum Disorder. PMID:28848387
A New Network-Based Strategy for Predicting the Potential miRNA-mRNA Interactions in Tumorigenesis. PMID:28831388
Sex differences in microRNA-mRNA networks: examination of novel epigenetic programming mechanisms in the sexually dimorphic neonatal hypothalamus. PMID:28810930
Consensus datasets of mouse miRNA-mRNA interactions from multiple online resources. PMID:28795090
Identifying the miRNA signature associated with survival time in patients with lung adenocarcinoma using miRNA expression profiles. PMID:28790336
Absence of microRNA-21 does not reduce muscular dystrophy in mouse models of LAMA2-CMD. PMID:28771630
Characterization and predicted role of microRNA expression profiles associated with early childhood obesity. PMID:28765929
A comprehensive insight into the clinicopathologic significance of miR-144-3p in hepatocellular carcinoma. PMID:28744145
MicroRNA profiling of ovarian granulosa cell tumours reveals novel diagnostic and prognostic markers. PMID:28736583
Gene expression reversal toward pre-adult levels in the aging human brain and age-related loss of cellular identity. PMID:28724976
Clinical value of integrated-signature miRNAs in esophageal cancer. PMID:28707457
Joint Covariate Detection on Expression Profiles for Identifying MicroRNAs Related to Venous Metastasis in Hepatocellular Carcinoma. PMID:28706271
CSmiRTar: Condition-Specific microRNA targets database. PMID:28704505
MicroRNA Signature of Human Microvascular Endothelium Infected with Rickettsia rickettsii. PMID:28698491
Syncytiotrophoblast derived extracellular vesicles transfer functional placental miRNAs to primary human endothelial cells. PMID:28676635
MicroRNA-containing extracellular vesicles released from endothelial colony-forming cells modulate angiogenesis during ischaemic retinopathy. PMID:28631889
Chronic low-dose exposure to a mixture of environmental endocrine disruptors induces microRNAs/isomiRs deregulation in mouse concomitant with intratesticular estradiol reduction. PMID:28611354
BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases. PMID:28605773
Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis. PMID:28605770
Plasma and White Blood Cells Show Different miRNA Expression Profiles in Parkinson's Disease. PMID:28540642
Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer. PMID:28482794
MYCbase: a database of functional sites and biochemical properties of Myc in both normal and cancer cells. PMID:28454513
Non-small cell lung cancer associated microRNA expression signature: integrated bioinformatics analysis, validation and clinical significance. PMID:28445945
miR-133b, a particular member of myomiRs, coming into playing its unique pathological role in human cancer. PMID:28422730
Human microRNA expression in sporadic and FAP-associated desmoid tumors and correlation with beta-catenin mutations. PMID:28418912
Hsa_circ_0005986 inhibits carcinogenesis by acting as a miR-129-5p sponge and is used as a novel biomarker for hepatocellular carcinoma. PMID:28410211
Joint Covariate Detection on Expression Profiles for Selecting Prognostic miRNAs in Glioblastoma. PMID:28409153
The role of CRKL in breast cancer metastasis: insights from systems biology. PMID:28392847
Pediatric Ependymoma: A Proteomics Perspective. PMID:28387652
Comparative study of joint bioinformatics analysis of underlying potential of 'neurimmiR', miR-212-3P/miR-132-3P, being involved in epilepsy and its emerging role in human cancer. PMID:28380454
Microarray profiling of circular RNAs in human papillary thyroid carcinoma. PMID:28288173
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data. PMID:28288115
A Signature of Circulating microRNAs Predicts the Susceptibility of Acute Mountain Sickness. PMID:28228730
Rpph1 Upregulates CDC42 Expression and Promotes Hippocampal Neuron Dendritic Spine Formation by Competing with miR-330-5p. PMID:28223918
Defining age- and lactocrine-sensitive elements of the neonatal porcine uterine microRNA-mRNA interactome. PMID:28203709
Mapping circulating serum miRNAs to their immune-related target mRNAs. PMID:28203094
MiRNATIP: a SOM-based miRNA-target interactions predictor. PMID:28185545
Sex and age differences in the expression of liver microRNAs during the life span of F344 rats. PMID:28174625
Estimating survival time of patients with glioblastoma multiforme and characterization of the identified microRNA signatures. PMID:28155650
microRNA target prediction programs predict many false positives. PMID:28148562
Placental dysfunction is associated with altered microRNA expression in pregnant women with low folate status. PMID:28105727
Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PMID:28103241
The lncRNA CRNDE promotes colorectal cancer cell proliferation and chemoresistance via miR-181a-5p-mediated regulation of Wnt/β-catenin signaling. PMID:28086904
RAIN: RNA-protein Association and Interaction Networks. PMID:28077569
Gene co-expression analysis for functional classification and gene-disease predictions. PMID:28077403
Prognostic value of microRNAs in osteosarcoma: A meta-analysis. PMID:28060730
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Genome-wide association study with additional genetic and post-transcriptional analyses reveals novel regulators of plasma factor XI levels. PMID:28053049
The in vivo genetic toolkit for studying expression and functions of Drosophila melanogaster microRNAs. PMID:28010188
miR-323a-3p regulates lung fibrosis by targeting multiple profibrotic pathways. PMID:27942594
Tools for Sequence-Based miRNA Target Prediction: What to Choose? PMID:27941681
miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA-target interaction data. PMID:27903911
Joint Profiling of miRNAs and mRNAs Reveals miRNA Mediated Gene Regulation in the Göttingen Minipig Obesity Model. PMID:27902747
Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences. PMID:27899600
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
Racial differences in microRNA and gene expression in hypertensive women. PMID:27779208
Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer. PMID:27766936
miRPathDB: a new dictionary on microRNAs and target pathways. PMID:27742822
Endothelial and circulating C19MC microRNAs are biomarkers of infantile hemangioma. PMID:27660822
MicroRNA Signatures of Colonic Polyps on Screening and Histology. PMID:27658891
An Eye on Age-Related Macular Degeneration: The Role of MicroRNAs in Disease Pathology. PMID:27658786
Toward the promise of microRNAs - Enhancing reproducibility and rigor in microRNA research. PMID:27645402
Circulating microRNA signature for the diagnosis of very high-risk prostate cancer. PMID:27601638
Influence of gestational diabetes mellitus on human umbilical vein endothelial cell miRNA. PMID:27562513
Extracellular RNA in aging. PMID:27531497
MicroRNAs as Novel Biomarkers of Deployment Status and Exposure to Polychlorinated Dibenzo-p-Dioxins/Dibenzofurans. PMID:27501109
MicroRNA screening identifies a link between NOVA1 expression and a low level of IKAP in familial dysautonomia. PMID:27483351
Identification of a circulating microRNA signature to distinguish recurrence in breast cancer patients. PMID:27409424
miR-155 in the progression of lung fibrosis in systemic sclerosis. PMID:27377409
MicroRNA-196a2 Biomarker and Targetome Network Analysis in Solid Tumors. PMID:27342110
Circulating microRNA Profiles during the Bovine Oestrous Cycle. PMID:27340826
Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis. PMID:27295045
Unmasking Upstream Gene Expression Regulators with miRNA-corrected mRNA Data. PMID:27279737
Transcriptional Profiling and miRNA-Target Network Analysis Identify Potential Biomarkers for Efficacy Evaluation of Fuzheng-Huayu Formula-Treated Hepatitis B Caused Liver Cirrhosis. PMID:27271613
miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases. PMID:27216254
TarPmiR: a new approach for microRNA target site prediction. PMID:27207945
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. PMID:27207881
The Response of microRNAs to Solar UVR in Skin-Resident Melanocytes Differs between Melanoma Patients and Healthy Persons. PMID:27149382
Sjögren's syndrome-associated microRNAs in CD14(+) monocytes unveils targeted TGFβ signaling. PMID:27142093
PATZ1 is a target of miR-29b that is induced by Ha-Ras oncogene in rat thyroid cells. PMID:27125250
Air pollution-induced placental epigenetic alterations in early life: a candidate miRNA approach. PMID:27104955
Selective enrichment of microRNAs in extracellular matrix vesicles produced by growth plate chondrocytes. PMID:27080510
A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer. PMID:27067391
Predicting miRNA Targets by Integrating Gene Regulatory Knowledge with Expression Profiles. PMID:27064982
Experimental procedures to identify and validate specific mRNA targets of miRNAs. PMID:27047316
Endogenous microRNA sponges: evidence and controversy. PMID:27040487
GAMDB: a web resource to connect microRNAs with autophagy in gerontology. PMID:27037912
Precursor miR-499a Variant but not miR-196a2 is Associated with Rheumatoid Arthritis Susceptibility in an Egyptian Population. PMID:27002721
Expression Profiles of miRNA Subsets Distinguish Human Colorectal Carcinoma and Normal Colonic Mucosa. PMID:26963002
Tiny giants of gene regulation: experimental strategies for microRNA functional studies. PMID:26950183
Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma. PMID:26824418
Identification of miRNA-mRNA regulatory modules by exploring collective group relationships. PMID:26817421
Distinct cognitive effects and underlying transcriptome changes upon inhibition of individual miRNAs in hippocampal neurons. PMID:26813637
Enhanced MAPK signaling drives ETS1-mediated induction of miR-29b leading to downregulation of TET1 and changes in epigenetic modifications in a subset of lung SCC. PMID:26776158
CrossHub: a tool for multi-way analysis of The Cancer Genome Atlas (TCGA) in the context of gene expression regulation mechanisms. PMID:26773058
Human Blastocyst Secreted microRNA Regulate Endometrial Epithelial Cell Adhesion. PMID:26629549
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. PMID:26612864
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. PMID:26590260
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. PMID:26586797
Bioinformatic tools for microRNA dissection. PMID:26578605
Identification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network. PMID:26578390
Effectiveness and Usability of Bioinformatics Tools to Analyze Pathways Associated with miRNA Expression. PMID:26560461
Computational Characterization of Exogenous MicroRNAs that Can Be Transferred into Human Circulation. PMID:26528912
MicroRNA circulating in the early aftermath of motor vehicle collision predict persistent pain development and suggest a role for microRNA in sex-specific pain differences. PMID:26498117
MtiBase: a database for decoding microRNA target sites located within CDS and 5'UTR regions from CLIP-Seq and expression profile datasets. PMID:26490638
Down-regulation of the Lamin A/C in neuroblastoma triggers the expansion of tumor initiating cells. PMID:26439802
miRTex: A Text Mining System for miRNA-Gene Relation Extraction. PMID:26407127
The mRNA related ceRNA-ceRNA landscape and significance across 20 major cancer types. PMID:26304537
Validated MicroRNA Target Databases: An Evaluation. PMID:26286669
Spaceflight alters expression of microRNA during T-cell activation. PMID:26276131
N-myc is a key switch regulating the proliferation cycle of postnatal cerebellar granule cell progenitors. PMID:26238256
MicroRNA Profiling of Neurons Generated Using Induced Pluripotent Stem Cells Derived from Patients with Schizophrenia and Schizoaffective Disorder, and 22q11.2 Del. PMID:26173148
Chemokines and microRNAs in atherosclerosis. PMID:26001902
DIANA-miRPath v3.0: deciphering microRNA function with experimental support. PMID:25977294
The 3'-5' exoribonuclease Dis3 regulates the expression of specific microRNAs in Drosophila wing imaginal discs. PMID:25892215
Biological databases for human research. PMID:25712261
miRNAs regulated by estrogens, tamoxifen, and endocrine disruptors and their downstream gene targets. PMID:25659536
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support PubMed citations: 301.

301 articles citing: TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

ceRNAshiny: An Interactive R/Shiny App for Identification and Analysis of ceRNA Regulation. PMID:35647026
Identification of Functional CircRNA-miRNA-mRNA Regulatory Network in Dorsolateral Prefrontal Cortex Neurons of Patients With Cocaine Use Disorder. PMID:35493321
Prognostic Implications and Immune Infiltration Characteristics of Chromosomal Instability-Related Dysregulated CeRNA in Lung Adenocarcinoma. PMID:35419410
The role of microRNAs in COVID-19 with a focus on miR-200c. PMID:35356072
Five-gene signature predicts acute kidney injury in early kidney transplant patients. PMID:35320116
Immune Response Is Key to Genetic Mechanisms of SARS-CoV-2 Infection With Psychiatric Disorders Based on Differential Gene Expression Pattern Analysis. PMID:35185890
Upregulation of miR-34a-5p, miR-20a-3p and miR-29a-3p by Onconase in A375 Melanoma Cells Correlates with the Downregulation of Specific Onco-Proteins. PMID:35163570
MicroRNAs miR-451a and Let-7i-5p Profiles in Circulating Exosomes Vary among Individuals with Different Sickle Hemoglobin Genotypes and Malaria. PMID:35159951
MicroRNA expression integrated analysis and identification of novel biomarkers in small cell lung cancer: a meta-analysis. PMID:35117700
Predicting miRNA targets for hepatocellular carcinoma with an integrated method. PMID:35117522
Construction of a ceRNA network of hub genes affecting immune infiltration in ovarian cancer identified by WGCNA. PMID:34461858
Transcriptome wide analysis of long non-coding RNA-associated ceRNA regulatory circuits in psoriasis. PMID:34080300
Bioinformatics and system biology approaches to identify the diseasome and comorbidities complexities of SARS-CoV-2 infection with the digestive tract disorders. PMID:33993223
An Ensemble Method to Predict Target Genes and Pathways in Uveal Melanoma. PMID:33817073
Fetal sex modulates placental microRNA expression, potential microRNA-mRNA interactions, and levels of amino acid transporter expression and substrates: INFAT study subpopulation analysis of n-3 LCPUFA intervention during pregnancy and associations with offspring body composition. PMID:33657992
MiR-378a-3p as a putative biomarker for hepatocellular carcinoma diagnosis and prognosis: Computational screening with experimental validation. PMID:33634974
Bioinformatics and system biology approach to identify the influences of COVID-19 on cardiovascular and hypertensive comorbidities. PMID:33458761
Identification of candidate genes encoding tumor-specific neoantigens in early- and late-stage colon adenocarcinoma. PMID:33428592
Analysis of Pan-omics Data in Human Interactome Network (APODHIN). PMID:33363571
MiRNA-Mediated Subpathway Identification and Network Module Analysis to Reveal Prognostic Markers in Human Pancreatic Cancer. PMID:33362865
miRNA profiling of primate cervicovaginal lavage and extracellular vesicles reveals miR-186-5p as a potential antiretroviral factor in macrophages. PMID:33017084
Aberration of the modulatory functions of intronic microRNA hsa-miR-933 on its host gene ATF2 results in type II diabetes mellitus and neurodegenerative disease development. PMID:32993798
A polyclonal allelic expression assay for detecting regulatory effects of transcript variants. PMID:32912286
Nicotine Changes the microRNA Profile to Regulate the FOXO Memory Program of CD8+ T Cells in Rheumatoid Arthritis. PMID:32765511
Targeting microRNA in hematologic malignancies. PMID:32657797
Silencing miR-370-3p rescues funny current and sinus node function in heart failure. PMID:32647133
Circulating miRNAs in Small Extracellular Vesicles Secreted by a Human Melanoma Xenograft in Mouse Brains. PMID:32575666
Expression profiling of microRNAs and isomiRs in conventional central chondrosarcoma. PMID:32566253
Dynamical network analysis reveals key microRNAs in progressive stages of lung cancer. PMID:32428028
Expression levels of candidate circulating microRNAs in pediatric tuberculosis. PMID:32401176
miR-142 induces accumulation of reactive oxygen species (ROS) by inhibiting pexophagy in aged bone marrow mesenchymal stem cells. PMID:32111926
Comprehensive analysis of mRNA-level and miRNA-level subpathway activities for identifying robust ovarian cancer prognostic signatures. PMID:31957240
Systematic analysis of lncRNA and microRNA dynamic features reveals diagnostic and prognostic biomarkers of myocardial infarction. PMID:31927529
Reduced expression of microRNA-139-5p in hepatocellular carcinoma results in a poor outcome: An exploration the roles of microRNA-139-5p in tumorigenesis, advancement and prognosis at the molecular biological level using an integrated meta-analysis and bioinformatic investigation. PMID:31807180
Transcriptome analysis of miRNA and mRNA in the livers of pigs with highly diverged backfat thickness. PMID:31727987
SNP eQTL status and eQTL density in the adjacent region of the SNP are associated with its statistical significance in GWA studies. PMID:31718536
Elevated hsa-miR-590-3p expression down-regulates HMGB2 expression and contributes to the severity of IgA nephropathy. PMID:31557418
Quantifying Risk Pathway Crosstalk Mediated by miRNA to Screen Precision drugs for Breast Cancer Patients. PMID:31466383
Topologically inferring active miRNA-mediated subpathways toward precise cancer classification by directed random walk. PMID:31408573
MicroRNA Expression and Correlation with mRNA Levels of Colorectal Cancer-Related Genes. PMID:31102171
Analysis of the role of mutations in the KMT2D histone lysine methyltransferase in bladder cancer. PMID:30984543
Identification of lncRNA competitively regulated subpathways in myocardial infarction. PMID:30936975
Elevated Plasma microRNA-105-5p Level in Patients With Idiopathic Parkinson's Disease: A Potential Disease Biomarker. PMID:30936821
CeModule: an integrative framework for discovering regulatory patterns from genomic data in cancer. PMID:30732558
Improvement of cancer subtype prediction by incorporating transcriptome expression data and heterogeneous biological networks. PMID:30598111
Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis. PMID:30384176
HMDD v3.0: a database for experimentally supported human microRNA-disease associations. PMID:30364956
Systematic identification and analysis of dysregulated miRNA and transcription factor feed-forward loops in hypertrophic cardiomyopathy. PMID:30338905
A Filtering Method for Identification of Significant Target mRNAs of Coexpressed and Differentially Expressed MicroRNA Clusters. PMID:30298100
Identification of pathways significantly associated with spondyloarthropathy/ankylosing spondylitis using the sub‑pathway method. PMID:30132545
Olea europaea small RNA with functional homology to human miR34a in cross-kingdom interaction of anti-tumoral response. PMID:30120339
MicroRNA-224 down-regulates Glycine N-methyltransferase gene expression in Hepatocellular Carcinoma. PMID:30115977
FACER: comprehensive molecular and functional characterization of epigenetic chromatin regulators. PMID:30102398
MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery. PMID:30081733
Construction of a microRNA‑associated feed‑forward loop network that identifies regulators of cardiac hypertrophy and acute myocardial infarction. PMID:30066833
Age-Related Changes in MicroRNA in the Rat Pituitary and Potential Role in GH Regulation. PMID:30011963
miRNAs in Insects Infected by Animal and Plant Viruses. PMID:29970868
Circulating miR-30a-5p as a prognostic biomarker of left ventricular dysfunction after acute myocardial infarction. PMID:29959359
Systematic prediction of target genes and pathways in cervical cancer from microRNA expression data. PMID:29928371
Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model. PMID:29784056
The deterministic role of 5-mers in microRNA-gene targeting. PMID:29749304
The deregulated microRNAome contributes to the cellular response to aneuploidy. PMID:29703144
Identification of a robust subpathway-based signature for acute myeloid leukemia prognosis using an miRNA integrated strategy. PMID:29570744
Characterization of dysregulated lncRNA-mRNA network based on ceRNA hypothesis to reveal the occurrence and recurrence of myocardial infarction. PMID:29531832
MiR-29b/TET1/ZEB2 signaling axis regulates metastatic properties and epithelial-mesenchymal transition in breast cancer cells. PMID:29254230
Angiogenesis in adenosquamous cancer of pancreas. PMID:29221165
Micro-ribonucleic acid-155 is a direct target of Meis1, but not a driver in acute myeloid leukemia. PMID:29217774
sPAGM: inferring subpathway activity by integrating gene and miRNA expression-robust functional signature identification for melanoma prognoses. PMID:29127397
A novel miRNA analysis framework to analyze differential biological networks. PMID:29097749
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data. PMID:28911111
Screening candidate microRNA-mRNA regulatory pairs for predicting the response to chemoradiotherapy in rectal cancer by a bioinformatics approach. PMID:28900297
Biological networks in Parkinson's disease: an insight into the epigenetic mechanisms associated with this disease. PMID:28899360
Overexpression of Exportin-5 Overrides the Inhibitory Effect of miRNAs Regulation Control and Stabilize Proteins via Posttranslation Modifications in Prostate Cancer. PMID:28881308
Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data. PMID:28821014
The role of microRNAs in different types of thyroid carcinoma: a comprehensive analysis to find new miRNA supplementary therapies. PMID:28762013
Combining Supervised and Unsupervised Learning for Improved miRNA Target Prediction. PMID:28715336
Dysregulation of microRNA-214 and PTEN contributes to the pathogenesis of hypoxic pulmonary hypertension. PMID:28684904
Construction of competitive endogenous RNA network reveals regulatory role of long non-coding RNAs in type 2 diabetes mellitus. PMID:28643459
Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. PMID:28609293
Hierarchical Feature Selection Incorporating Known and Novel Biological Information: Identifying Genomic Features Related to Prostate Cancer Recurrence. PMID:28435175
Micro RNAs and DNA methylation are regulatory players in human cells with altered X chromosome to autosome balance. PMID:28233878
MicroRNA-independent functions of DGCR8 are essential for neocortical development and TBR1 expression. PMID:28232627
miRNAs target databases: developmental methods and target identification techniques with functional annotations. PMID:28204845
Identifying survival-associated modules from the dysregulated triplet network in glioblastoma multiforme. PMID:28168356
Understanding cancer complexome using networks, spectral graph theory and multilayer framework. PMID:28155908
LncSubpathway: a novel approach for identifying dysfunctional subpathways associated with risk lncRNAs by integrating lncRNA and mRNA expression profiles and pathway topologies. PMID:28152521
DMirNet: Inferring direct microRNA-mRNA association networks. PMID:28105958
miR-1297 promotes cell proliferation by inhibiting RB1 in liver cancer. PMID:28105225
Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PMID:28103241
microRNAs and DICER1 are regulated by 1,25-dihydroxyvitamin D in prostate stroma. PMID:28089917
Early stage of cytomegalovirus infection suppresses host microRNA expression regulation in human fibroblasts. PMID:28051642
Knowledge-Guided Bioinformatics Model for Identifying Autism Spectrum Disorder Diagnostic MicroRNA Biomarkers. PMID:28000768
Identification of biomarker microRNAs for predicting the response of colorectal cancer to neoadjuvant chemoradiotherapy based on microRNA regulatory network. PMID:27903980
Expression of MMP9, SERPINE1 and miR-134 as prognostic factors in esophageal cancer. PMID:27895782
miRNAs differentially expressed by next-generation sequencing in cord blood buffy coat samples of boys and girls. PMID:27882772
Discovery and replication of microRNAs for breast cancer risk using genome-wide profiling. PMID:27833082
Analysis of microRNA and Gene Expression Profiles in Multiple Sclerosis: Integrating Interaction Data to Uncover Regulatory Mechanisms. PMID:27694855
Subpathway-LNCE: Identify dysfunctional subpathways competitively regulated by lncRNAs through integrating lncRNA-mRNA expression profile and pathway topologies. PMID:27634882
Aging-associated changes in microRNA expression profile of internal anal sphincter smooth muscle: Role of microRNA-133a. PMID:27634012
Integrated network analysis reveals distinct regulatory roles of transcription factors and microRNAs. PMID:27604961
Preliminary evidence for association of genetic variants in pri-miR-34b/c and abnormal miR-34c expression with attention deficit and hyperactivity disorder. PMID:27576168
A network medicine approach to build a comprehensive atlas for the prognosis of human cancer. PMID:27559151
Construction and analysis of dysregulated lncRNA-associated ceRNA network identified novel lncRNA biomarkers for early diagnosis of human pancreatic cancer. PMID:27487139
MiRSEA: Discovering the pathways regulated by dysfunctional MicroRNAs. PMID:27474169
Transcriptome Analysis on Monocytes from Patients with Neovascular Age-Related Macular Degeneration. PMID:27374485
Studying Dynamic Features in Myocardial Infarction Progression by Integrating miRNA-Transcription Factor Co-Regulatory Networks and Time-Series RNA Expression Data from Peripheral Blood Mononuclear Cells. PMID:27367417
IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity. PMID:27323856
Reconstructing the temporal progression of HIV-1 immune response pathways. PMID:27307624
Identification of a novel PPARβ/δ/miR-21-3p axis in UV-induced skin inflammation. PMID:27250636
Identifying significant microRNA-mRNA pairs associated with breast cancer subtypes. PMID:27245063
Association of a let-7 miRNA binding region of TGFBR1 with hereditary mismatch repair proficient colorectal cancer (MSS HNPCC). PMID:27234654
LimiTT: link miRNAs to targets. PMID:27170328
miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis. PMID:27105848
Experimental procedures to identify and validate specific mRNA targets of miRNAs. PMID:27047316
Identifying Cancer Subtypes from miRNA-TF-mRNA Regulatory Networks and Expression Data. PMID:27035433
MiRImpact, a new bioinformatic method using complete microRNA expression profiles to assess their overall influence on the activity of intracellular molecular pathways. PMID:27027999
Tiny giants of gene regulation: experimental strategies for microRNA functional studies. PMID:26950183
Distinct miRNA profiles in normal and gastric cancer myofibroblasts and significance in Wnt signaling. PMID:26939869
Integrated Analysis of Dysregulated ncRNA and mRNA Expression Profiles in Humans Exposed to Carbon Nanotubes. PMID:26930275
Ensembl regulation resources. PMID:26888907
New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach. PMID:26883867
Characterization of long non-coding RNA-associated ceRNA network to reveal potential prognostic lncRNA biomarkers in human ovarian cancer. PMID:26863568
Integration of Multiple Genomic and Phenotype Data to Infer Novel miRNA-Disease Associations. PMID:26849207
Microvesicles from Mesenchymal Stromal Cells Are Involved in HPC-Microenvironment Crosstalk in Myelodysplastic Patients. PMID:26836120
miRLAB: An R Based Dry Lab for Exploring miRNA-mRNA Regulatory Relationships. PMID:26716983
Human MicroRNA miR-532-5p Exhibits Antiviral Activity against West Nile Virus via Suppression of Host Genes SESTD1 and TAB3 Required for Virus Replication. PMID:26676784
Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types. PMID:26655252
Bioinformatic tools for microRNA dissection. PMID:26578605
Influence of miRNA-106b and miRNA-135a on butyrate-regulated expression of p21 and Cyclin D2 in human colon adenoma cells. PMID:26559563
Altered Gene Expression Associated with microRNA Binding Site Polymorphisms. PMID:26496489
Transcription factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T cell. PMID:26487345
Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies. PMID:26472186
Down-Regulation of miR-92 in Breast Epithelial Cells and in Normal but Not Tumour Fibroblasts Contributes to Breast Carcinogenesis. PMID:26437339
miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. PMID:26424084
Anti-inflammatory effects of miR-21 in the macrophage response to peritonitis. PMID:26382295
Small RNA Sequencing Based Identification of MiRNAs in Daphnia magna. PMID:26367422
Plasma MicroRNAs as Novel Biomarkers for Patients with Intraductal Papillary Mucinous Neoplasms of the Pancreas. PMID:26314797
Identification of miR-215 mediated targets/pathways via translational immunoprecipitation expression analysis (TrIP-chip). PMID:26287603
Comparative MiRNA Expressional Profiles and Molecular Networks in Human Small Bowel Tissues of Necrotizing Enterocolitis and Spontaneous Intestinal Perforation. PMID:26274503
Mining featured micro ribonucleic acids associated with lung cancer based on bioinformatics. PMID:26273407
MicroRNA and transcription factor mediated regulatory network analysis reveals critical regulators and regulatory modules in myocardial infarction. PMID:26258537
Dynamical Regulation Analysis Identifies Molecular Mechanisms of Fuzheng-Huayu Formula against Hepatitis B-Caused Liver Cirrhosis. PMID:26221171
miR-29b is an indicator of prognosis in breast cancer patients. PMID:26171207
Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers. PMID:26156524
MicroRNAs Used in Combination with Anti-Cancer Treatments Can Enhance Therapy Efficacy. PMID:26156420
Ensemble Methods for MiRNA Target Prediction from Expression Data. PMID:26114448
Global miRNA expression and correlation with mRNA levels in primary human bone cells. PMID:26078267
Principles of miRNA-mRNA interactions: beyond sequence complementarity. PMID:26037721
Integrated analysis of DNA methylation and microRNA regulation of the lung adenocarcinoma transcriptome. PMID:26035298
sRNAtoolbox: an integrated collection of small RNA research tools. PMID:26019179
Circulating MicroRNA-30d Is Associated With Response to Cardiac Resynchronization Therapy in Heart Failure and Regulates Cardiomyocyte Apoptosis: A Translational Pilot Study. PMID:25995320
Modulation of miR-21 signaling by MPS1 in human glioblastoma. PMID:25991676
Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis. PMID:25960784
Inflammation triggers specific microRNA profiles in human adipocytes and macrophages and in their supernatants. PMID:25926893
Principal component analysis-based unsupervised feature extraction applied to in silico drug discovery for posttraumatic stress disorder-mediated heart disease. PMID:25925353
Deregulated microRNAs in triple-negative breast cancer revealed by deep sequencing. PMID:25888956
Epithelial Plasticity in Cancer: Unmasking a MicroRNA Network for TGF-β-, Notch-, and Wnt-Mediated EMT. PMID:25883651
An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online tools. PMID:25877638
MiRNA and TF co-regulatory network analysis for the pathology and recurrence of myocardial infarction. PMID:25867756
miRGate: a curated database of human, mouse and rat miRNA-mRNA targets. PMID:25858286
Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: a lung cancer study. PMID:25852169
Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer. PMID:25800746
Genome-wide identification of microRNA expression quantitative trait loci. PMID:25791433
A systems biology approach reveals the dose- and time-dependent effect of primary human airway epithelium tissue culture after exposure to cigarette smoke in vitro. PMID:25788831
Hsa-microRNA-181a is a regulator of a number of cancer genes and a biomarker for endometrial carcinoma in patients: a bioinformatic and clinical study and the therapeutic implication. PMID:25733820
Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling. PMID:25707768
Prediction of desmoid tumor progression using miRNA expression profiling. PMID:25707497
Coding and noncoding expression patterns associated with rare obesity-related disorders: Prader-Willi and Alström syndromes. PMID:25705109
Dissecting the roles of microRNAs in coronary heart disease via integrative genomic analyses. PMID:25657313
Methylated microRNA genes of the developing murine palate. PMID:25642850
Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy. PMID:25635527
Analysis of tissue and serum microRNA expression in patients with upper urinary tract urothelial cancer. PMID:25629698
Comprehensive analysis of small RNA-seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana. PMID:25629686
Systems approach for the selection of micro-RNAs as therapeutic biomarkers of anti-EGFR monoclonal antibody treatment in colorectal cancer. PMID:25622824
MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets. PMID:25614300
A genome-wide investigation of microRNA expression identifies biologically-meaningful microRNAs that distinguish between high-risk and low-risk intraductal papillary mucinous neoplasms of the pancreas. PMID:25607660
MAPK and JAK/STAT pathways targeted by miR-23a and miR-23b in prostate cancer: computational and in vitro approaches. PMID:25604141
Differential DNA methylation profiles of coding and non-coding genes define hippocampal sclerosis in human temporal lobe epilepsy. PMID:25552301
Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis. PMID:25539629
Rapid regulation of microRNA following induction of long-term potentiation in vivo. PMID:25538559
mirPub: a database for searching microRNA publications. PMID:25527833
Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput. PMID:25515586
The roles of AXIN2 in tumorigenesis and epigenetic regulation. PMID:25504512
Determining differentially expressed miRNAs and validating miRNA--target relationships using the SPRET/Ei mouse strain. PMID:25491574
A meta-analysis of microRNA expression in liver cancer. PMID:25490558
miRNome of inflammatory breast cancer. PMID:25471792
Notch signal integration in the vasculature during remodeling. PMID:25464152
A Bayesian Framework to Improve MicroRNA Target Prediction by Incorporating External Information. PMID:25452690
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. PMID:25416803
Insights into the miRNA regulations in human disease genes. PMID:25416156
Combined microRNA and ER expression: a new classifier for familial and sporadic breast cancer patients. PMID:25406994
The oncogenic MicroRNA Hsa-miR-155-5p targets the transcription factor ELK3 and links it to the hypoxia response. PMID:25401928
Profiling the microRNA Expression in Human iPS and iPS-derived Retinal Pigment Epithelium. PMID:25392691
Hunting the needle in the haystack: a guide to obtain biologically meaningful microRNA targets. PMID:25383673
VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets. PMID:25380780
Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy. PMID:25361207
Ensembl 2015. PMID:25352552
mirMark: a site-level and UTR-level classifier for miRNA target prediction. PMID:25344330
EPO Mediates Neurotrophic, Neuroprotective, Anti-Oxidant, and Anti-Apoptotic Effects via Downregulation of miR-451 and miR-885-5p in SH-SY5Y Neuron-Like Cells. PMID:25324845
A novel PCR-based approach to discover miRNA target genes. PMID:25317074
Effects of Acute Prenatal Exposure to Ethanol on microRNA Expression are Ameliorated by Social Enrichment. PMID:25309888
Genome-wide microRNA changes in human intracranial aneurysms. PMID:25300531
Phosphodiesterase 8a supports HIV-1 replication in macrophages at the level of reverse transcription. PMID:25295610
Large-scale modeling of condition-specific gene regulatory networks by information integration and inference. PMID:25294834
System analysis of LWDH related genes based on text mining in biological networks. PMID:25243143
Breast- and salivary gland-derived adenoid cystic carcinomas: potential post-transcriptional divergencies. A pilot study based on miRNA expression profiling of four cases and review of the potential relevance of the findings. PMID:25240490
The characterization of microRNA-mediated gene regulation as impacted by both target site location and seed match type. PMID:25238537
Transcriptional profiling and dynamical regulation analysis identify potential kernel target genes of SCYL1-BP1 in HEK293T cells. PMID:25234469
In silico analysis of regulatory networks underlines the role of miR-10b-5p and its target BDNF in huntington's disease. PMID:25210621
MicroRNA Deregulation in Anaplastic Thyroid Cancer Biology. PMID:25202329
Investigation of key miRNAs and target genes in bladder cancer using miRNA profiling and bioinformatic tools. PMID:25189652
Synergistic transcriptional and post-transcriptional regulation of ESC characteristics by core pluripotency transcription factors in protein-protein interaction networks. PMID:25171496
Expression of senescence-associated microRNAs and target genes in cellular aging and modulation by tocotrienol-rich fraction. PMID:25132913
Long noncoding RNA associated-competing endogenous RNAs in gastric cancer. PMID:25124853
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software. PMID:25120269
MicroRNAs differentially present in the plasma of HIV elite controllers reduce HIV infection in vitro. PMID:25081906
Integrated analysis of microRNA-target interactions with clinical outcomes for cancers. PMID:25079112
3'LIFE: a functional assay to detect miRNA targets in high-throughput. PMID:25074381
The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations. PMID:25063298
Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data. PMID:25061069
The role of RNA structure at 5' untranslated region in microRNA-mediated gene regulation. PMID:25002673
A systematic analysis of miRNA-mRNA paired variations reveals widespread miRNA misregulation in breast cancer. PMID:24949432
miRror-Suite: decoding coordinated regulation by microRNAs. PMID:24907353
Functional screening identifies miRNAs influencing apoptosis and proliferation in colorectal cancer. PMID:24892549
MicroRNA expression profiling of the developing murine upper lip. PMID:24849136
MicroRNA Target Identification-Experimental Approaches. PMID:24832658
RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction. PMID:24803509
The new world of RNAs. PMID:24764762
HIV-associated neuropathogenesis: a systems biology perspective for modeling and therapy. PMID:24732754
Similarity in targets with REST points to neural and glioblastoma related miRNAs. PMID:24728992
Macros in microRNA target identification: a comparative analysis of in silico, in vitro, and in vivo approaches to microRNA target identification. PMID:24717361
Studying the system-level involvement of microRNAs in Parkinson's disease. PMID:24690883
Integrative analysis of miRNA-mRNA and miRNA-miRNA interactions. PMID:24689063
Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections. PMID:24672033
Resources for functional genomics studies in Drosophila melanogaster. PMID:24653003
A systematic in silico mining of the mechanistic implications and therapeutic potentials of estrogen receptor (ER)-α in breast cancer. PMID:24614816
Exploring the molecular causes of hepatitis B virus vaccination response: an approach with epigenomic and transcriptomic data. PMID:24612962
MicroRNA-mRNA functional pairs for cisplatin resistance in ovarian cancer cells. PMID:24589211
Modeling miRNA-mRNA interactions: fitting chemical kinetics equations to microarray data. PMID:24548346
Computational developments in microRNA-regulated protein-protein interactions. PMID:24507415
MicroRNAs as Haematopoiesis Regulators. PMID:24454381
Comparative analysis of RNAi screening technologies at genome-scale reveals an inherent processing inefficiency of the plasmid-based shRNA hairpin. PMID:24433414
Circulating Cell and Plasma microRNA Profiles Differ between Non-ST-Segment and ST-Segment-Elevation Myocardial Infarction. PMID:24432306
The Role of miRNA in Haematological Malignancy. PMID:24416592
Characteristic Analysis from Excessive to Deficient Syndromes in Hepatocarcinoma Underlying miRNA Array Data. PMID:24382976
miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. PMID:24304892
Congenic fine-mapping identifies a major causal locus for variation in the native collateral circulation and ischemic injury in brain and lower extremity. PMID:24300334
MicroRNAs: fundamental regulators of gene expression in major affective disorders and suicidal behavior? PMID:24298237
Deep sequencing of small RNA repertoires in mice reveals metabolic disorders-associated hepatic miRNAs. PMID:24260478
Integrated expression profiles of mRNA and miRNA in polarized primary murine microglia. PMID:24244499
Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation. PMID:24219887
Distinct microRNA expression profile and targeted biological pathways in functional myeloid-derived suppressor cells induced by Δ9-tetrahydrocannabinol in vivo: regulation of CCAAT/enhancer-binding protein α by microRNA-690. PMID:24202177
HMDD v2.0: a database for experimentally supported human microRNA and disease associations. PMID:24194601
High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research. PMID:24160351
Positively correlated miRNA-mRNA regulatory networks in mouse frontal cortex during early stages of alcohol dependence. PMID:24148570
Dynamic expression of miR-132, miR-212, and miR-146 in the brain of different hosts infected with Angiostrongylus cantonensis. PMID:24142285
In-Silico Algorithms for the Screening of Possible microRNA Binding Sites and Their Interactions. PMID:24082822
SeedSeq: off-target transcriptome database. PMID:24069606
Integrated genomic analysis of triple-negative breast cancers reveals novel microRNAs associated with clinical and molecular phenotypes and sheds light on the pathways they control. PMID:24059244
targetHub: a programmable interface for miRNA-gene interactions. PMID:24013925
Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development. PMID:23997203
MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets. PMID:23863844
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. PMID:23824282
Characterizing genes with distinct methylation patterns in the context of protein-protein interaction network: application to human brain tissues. PMID:23776563
Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions. PMID:23771142
ResponseNet2.0: Revealing signaling and regulatory pathways connecting your proteins and genes--now with human data. PMID:23761447
Over-expression of the miRNA cluster at chromosome 14q32 in the alcoholic brain correlates with suppression of predicted target mRNA required for oligodendrocyte proliferation. PMID:23747354
A new algorithm for integrated analysis of miRNA-mRNA interactions based on individual classification reveals insights into bladder cancer. PMID:23717626
NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2. PMID:23710289
Progression from Excessive to Deficient Syndromes in Chronic Hepatitis B: A Dynamical Network Analysis of miRNA Array Data. PMID:23690867
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. PMID:23680784
Potential Impact of miR-137 and Its Targets in Schizophrenia. PMID:23637704
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. PMID:23622248
Long-lasting alterations to DNA methylation and ncRNAs could underlie the effects of fetal alcohol exposure in mice. PMID:23580197
Genetic regulation of human adipose microRNA expression and its consequences for metabolic traits. PMID:23562819
miR-214 promotes tumorigenesis by targeting lactotransferrin in nasopharyngeal carcinoma. PMID:23479198
In silico discovery of mitosis regulation networks associated with early distant metastases in estrogen receptor positive breast cancers. PMID:23470717
TGF-β/Smad2/3 signaling directly regulates several miRNAs in mouse ES cells and early embryos. PMID:23390484
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. PMID:23384594
24 hours in the life of HIV-1 in a T cell line. PMID:23382686
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. PMID:23368412
Minireview: miRomics in endocrinology: a novel approach for modeling endocrine diseases. PMID:23349525
Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function. PMID:23335783
SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. PMID:23331499
miR-203 regulates cell proliferation through its influence on Hakai expression. PMID:23285092
Genome-wide analysis of aberrantly expressed circulating miRNAs in patients with coal workers' pneumoconiosis. PMID:23275204
Respiratory syncytial virus regulates human microRNAs by using mechanisms involving beta interferon and NF-κB. PMID:23249809
Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. PMID:23204429
One decade of development and evolution of microRNA target prediction algorithms. PMID:23200135
An arrayed genome-scale lentiviral-enabled short hairpin RNA screen identifies lethal and rescuer gene candidates. PMID:23198867
MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting. PMID:23193297
SomamiR: a database for somatic mutations impacting microRNA function in cancer. PMID:23180788
Identifying miRNAs, targets and functions. PMID:23175680
Changes in microRNA expression in the MG-63 osteosarcoma cell line compared with osteoblasts. PMID:23162647
Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome. PMID:23049969
The bioinformatics analysis of miRNAs signatures differentially expressed in HER2(+) versus HER2(-) breast cancers. PMID:23009584
A simple method for analyzing actives in random RNAi screens: introducing the "H Score" for hit nomination & gene prioritization. PMID:22934950
The emerging paradigm of network medicine in the study of human disease. PMID:22821909
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. PMID:22649059
MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). PMID:22618880
Gene regulation is governed by a core network in hepatocellular carcinoma. PMID:22548756
TarBase: A comprehensive database of experimentally supported animal microRNA targets PubMed citations: 282.

282 articles citing: TarBase: A comprehensive database of experimentally supported animal microRNA targets

Statistical Bioinformatics to Uncover the Underlying Biological Mechanisms That Linked Smoking with Type 2 Diabetes Patients Using Transcritpomic and GWAS Analysis. PMID:35889263
Identification of core genes associated with the anti-atherosclerotic effects of Salvianolic acid B and immune cell infiltration characteristics using bioinformatics analysis. PMID:35842645
Identifying Potential Effective Diagnostic and Prognostic Biomarkers in Sepsis by Bioinformatics Analysis and Validation. PMID:35832399
Human cerebral spheroids undergo 4-aminopyridine-induced, activity associated changes in cellular composition and microrna expression. PMID:35650420
Integrative analysis of TCGA data identifies miRNAs as drug-specific survival biomarkers. PMID:35474090
A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans. PMID:35463453
MicroRNA-like snoRNA-Derived RNAs (sdRNAs) Promote Castration-Resistant Prostate Cancer. PMID:35455981
Identification of host transcriptome-guided repurposable drugs for SARS-CoV-1 infections and their validation with SARS-CoV-2 infections by using the integrated bioinformatics approaches. PMID:35390032
Using bioinformatics and systems biology to discover common pathogenetic processes between sarcoidosis and COVID-19. PMID:35317263
Identification of the shared gene signatures and pathways between sarcopenia and type 2 diabetes mellitus. PMID:35271662
Comprehensive pan-cancer analysis on CBX3 as a prognostic and immunological biomarker. PMID:35172803
Bioinformatics approach to identify common gene signatures of patients with coronavirus 2019 and lung adenocarcinoma. PMID:34775559
Prediction methods for microRNA targets in bilaterian animals: Toward a better understanding by biologists. PMID:34765096
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. PMID:34634810
miRkit: R framework analyzing miRNA PCR array data. PMID:34565441
MicroRNA Databases and Tools. PMID:34432277
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Experimental MicroRNA Targeting Validation. PMID:34432274
Molecular Characterization and Elucidation of Pathways to Identify Novel Therapeutic Targets in Pulmonary Arterial Hypertension. PMID:34366885
Network-based transcriptomic analysis identifies the genetic effect of COVID-19 to chronic kidney disease patients: A bioinformatics approach. PMID:34127904
An overview of graph databases and their applications in the biomedical domain. PMID:34003247
Bioinformatics and system biology approach to identify the influences of SARS-CoV-2 infections to idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease patients. PMID:33847347
Bioinformatics and machine learning approach identifies potential drug targets and pathways in COVID-19. PMID:33839760
Epigenetic Regulation of MicroRNA Clusters and Families during Tumor Development. PMID:33809566
The Genetic and Epigenetic Mechanisms Involved in Irreversible Pulp Neural Inflammation. PMID:33777260
miRNA Targets: From Prediction Tools to Experimental Validation. PMID:33374478
PmDNE: Prediction of miRNA-Disease Association Based on Network Embedding and Network Similarity Analysis. PMID:33354569
A Comparison of Gene Expression Changes in the Blood of Individuals Consuming Diets Supplemented with Olives, Nuts or Long-Chain Omega-3 Fatty Acids. PMID:33302351
Impact of Zika Virus Infection on Human Neural Stem Cell MicroRNA Signatures. PMID:33121145
miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions. PMID:32938402
Pathogenetic profiling of COVID-19 and SARS-like viruses. PMID:32778874
MIPDH: A Novel Computational Model for Predicting microRNA-mRNA Interactions by DeepWalk on a Heterogeneous Network. PMID:32715187
MicroRNAs alteration as early biomarkers for cancer and neurodegenerative diseases: New challenges in pesticides exposure. PMID:32612936
Data integration of 104 studies related with microRNA epigenetics revealed that miR-34 gene family is silenced by DNA methylation in the highest number of cancer types. PMID:32309547
Serum microRNA profiles among dioxin exposed veterans with monoclonal gammopathy of undetermined significance. PMID:32285757
Network-based computational approach to identify genetic links between cardiomyopathy and its risk factors. PMID:32196466
Model-Based Integration Analysis Revealed Presence of Novel Prognostic miRNA Targets and Important Cancer Driver Genes in Triple-Negative Breast Cancers. PMID:32182819
Inner Mongolian Cashmere Goat Secondary Follicle Development Regulation Research Based on mRNA-miRNA Co-analysis. PMID:32161290
Analysis and Identification of Tumorigenic Targets of MicroRNA in Cancer Cells by Photoreactive Chemical Probes. PMID:32102467
Network-Based Genetic Profiling Reveals Cellular Pathway Differences Between Follicular Thyroid Carcinoma and Follicular Thyroid Adenoma. PMID:32093341
A Network-Based Bioinformatics Approach to Identify Molecular Biomarkers for Type 2 Diabetes that Are Linked to the Progression of Neurological Diseases. PMID:32041280
Unveiling ncRNA regulatory axes in atherosclerosis progression. PMID:32009226
Schizophrenia-associated MicroRNA-Gene Interactions in the Dorsolateral Prefrontal Cortex. PMID:32006661
Differential expression of matrix metalloproteinases and miRNAs in the metastasis of oral squamous cell carcinoma. PMID:31996191
MicroRNAs and regulated interaction networks reveal differences between adult and pediatric acute myeloid leukemia. PMID:31966399
Altered microRNA and target gene expression related to Tetralogy of Fallot. PMID:31836860
The Regulatory Roles of Non-coding RNAs in Angiogenesis and Neovascularization From an Epigenetic Perspective. PMID:31709179
Meta-Analysis of Gene Expression Changes in the Blood of Patients with Mild Cognitive Impairment and Alzheimer's Disease Dementia. PMID:31671574
A network-based analysis for mining the risk pathways in glioblastoma. PMID:31402957
Exploring the Molecular Mechanism of the Drug-Treated Breast Cancer Based on Gene Expression Microarray. PMID:31311202
Long non-coding RNA LUCAT1/miR-5582-3p/TCF7L2 axis regulates breast cancer stemness via Wnt/β-catenin pathway. PMID:31300015
Mining Featured Biomarkers Linked with Epithelial Ovarian CancerBased on Bioinformatics. PMID:30970615
Lung microRNA Profiling Across the Estrous Cycle in Ozone-exposed Mice. PMID:30663642
Identifying cancer-related microRNAs based on subpathways. PMID:30472691
Arena-Idb: a platform to build human non-coding RNA interaction networks. PMID:30367585
Role of flow-sensitive microRNAs and long noncoding RNAs in vascular dysfunction and atherosclerosis. PMID:30300747
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Discovery of two-level modular organization from matched genomic data via joint matrix tri-factorization. PMID:29878151
A data-driven, knowledge-based approach to biomarker discovery: application to circulating microRNA markers of colorectal cancer prognosis. PMID:29872543
MicroRNAs as potential therapeutics to enhance chemosensitivity in advanced prostate cancer. PMID:29777112
Next Generation Sequencing of urine exfoliated cells: an approach of prostate cancer microRNAs research. PMID:29740090
Prediction of microRNA and gene target from an integrated network in chronic obstructive pulmonary disease based on canonical correlation analysis. PMID:29710745
Syndecan-1 Controls Lung Tumorigenesis by Regulating miRNAs Packaged in Exosomes. PMID:29355516
RBiomirGS: an all-in-one miRNA gene set analysis solution featuring target mRNA mapping and expression profile integration. PMID:29340253
mirDIP 4.1-integrative database of human microRNA target predictions. PMID:29194489
The orally active pterocarpanquinone LQB-118 exhibits cytotoxicity in prostate cancer cell and tumor models through cellular redox stress. PMID:29105806
Biomarker MicroRNAs for Diagnosis of Oral Squamous Cell Carcinoma Identified Based on Gene Expression Data and MicroRNA-mRNA Network Analysis. PMID:29098014
Exosomal microRNA signatures in multiple sclerosis reflect disease status. PMID:29084979
MicroRNA and mRNA Dysregulation in Astrocytes Infected with Zika Virus. PMID:29036922
MiR-148a impairs Ras/ERK signaling in B lymphocytes by targeting SOS proteins. PMID:28915601
Integrated analysis of mRNA and miRNA expression in HeLa cells expressing low levels of Nucleolin. PMID:28827664
Large-Scale Analysis of Drug Side Effects via Complex Regulatory Modules Composed of microRNAs, Transcription Factors and Gene Sets. PMID:28729650
Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression. PMID:28538367
Gene co-expression network analysis for identifying modules and functionally enriched pathways in SCA2. PMID:28525545
MicroRNAs as biomarkers associated with bladder cancer. PMID:28491850
Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma. PMID:28400759
miRNAs target databases: developmental methods and target identification techniques with functional annotations. PMID:28204845
MiRNATIP: a SOM-based miRNA-target interactions predictor. PMID:28185545
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets. PMID:28108657
Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PMID:28103241
Targeting microRNAs: a new action mechanism of natural compounds. PMID:28052018
Tools for Sequence-Based miRNA Target Prediction: What to Choose? PMID:27941681
Biomarker MicroRNAs for Diagnosis, Prognosis and Treatment of Hepatocellular Carcinoma: A Functional Survey and Comparison. PMID:27917899
miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA-target interaction data. PMID:27903911
An integrative genomics approach for identifying novel functional consequences of PBRM1 truncated mutations in clear cell renal cell carcinoma (ccRCC). PMID:27556922
Integrated analysis miRNA and mRNA profiling in patients with severe oligozoospermia reveals miR-34c-3p downregulates PLCXD3 expression. PMID:27486773
Identification of novel candidate drivers connecting different dysfunctional levels for lung adenocarcinoma using protein-protein interactions and a shortest path approach. PMID:27412431
Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs. PMID:27329603
Web-based tools for microRNAs involved in human cancer. PMID:27284356
Integrated miRNA-risk gene-pathway pair network analysis provides prognostic biomarkers for gastric cancer. PMID:27284247
Identification of associations between small molecule drugs and miRNAs based on functional similarity. PMID:27232942
MicroRNA-93 may control vascular endothelial growth factor A in circulating peripheral blood mononuclear cells in acute Kawasaki disease. PMID:27089500
Identification of microRNA-mRNA interactions in atrial fibrillation using microarray expression profiles and bioinformatics analysis. PMID:27082053
Experimental procedures to identify and validate specific mRNA targets of miRNAs. PMID:27047316
MicroRNA degeneracy and pluripotentiality within a Lavallière-tie architecture confers robustness to gene expression networks. PMID:27038488
Role of microRNAs in gastrointestinal smooth muscle fibrosis and dysfunction: novel molecular perspectives on the pathophysiology and therapeutic targeting. PMID:26822916
Missing value imputation for microRNA expression data by using a GO-based similarity measure. PMID:26818962
Comparison of Prognostic MicroRNA Biomarkers in Blood and Tissues for Gastric Cancer. PMID:26722365
Expression of microRNAs in human post-mortem amyotrophic lateral sclerosis spinal cords provides insight into disease mechanisms. PMID:26704906
Prediction of microRNA target genes using an efficient genetic algorithm-based decision tree. PMID:26649272
MicroRNA expression is altered in lateral septum across reproductive stages. PMID:26592715
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. PMID:26586797
Decreased MicroRNA-26a expression causes cisplatin resistance in human non-small cell lung cancer. PMID:26492332
Assembly and analysis of eukaryotic Argonaute-RNA complexes in microRNA-target recognition. PMID:26432829
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. PMID:26424082
The Human Myotrophin Variant Attenuates MicroRNA-Let-7 Binding Ability but Not Risk of Left Ventricular Hypertrophy in Human Essential Hypertension. PMID:26274321
Integrated systems approach identifies risk regulatory pathways and key regulators in coronary artery disease. PMID:26208504
An integrated approach to reveal miRNAs' impacts on the functional consequence of copy number alterations in cancer. PMID:26099552
Particulate Air Pollution Exposure and Expression of Viral and Human MicroRNAs in Blood: The Beijing Truck Driver Air Pollution Study. PMID:26068961
Identification of Gene and MicroRNA Signatures for Oral Cancer Developed from Oral Leukoplakia. PMID:26064958
The TF-miRNA Coregulation Network in Oral Lichen Planus. PMID:26064947
Systematic Genome-wide Screening and Prediction of microRNAs in EBOV During the 2014 Ebolavirus Outbreak. PMID:26011078
Unraveling novel TF-miRNA regulatory crosstalk in metastasis of Soft Tissue Sarcoma. PMID:25984907
TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks. PMID:25943543
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. PMID:25940629
Identification of active miRNA and transcription factor regulatory pathways in human obesity-related inflammation. PMID:25887648
HIV-1 Tat induces DNMT over-expression through microRNA dysregulation in HIV-related non Hodgkin lymphomas. PMID:25705251
Integrated miRNA and mRNA expression profiling to identify mRNA targets of dysregulated miRNAs in non-obstructive azoospermia. PMID:25628250
Gene expression profiling analysis of castration-resistant prostate cancer. PMID:25592164
Improving miRNA-mRNA interaction predictions. PMID:25559987
Clinically relevant genes and regulatory pathways associated with NRASQ61 mutations in melanoma through an integrative genomics approach. PMID:25537510
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. PMID:25416803
Hunting the needle in the haystack: a guide to obtain biologically meaningful microRNA targets. PMID:25383673
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. PMID:25281301
Computational Methods for MicroRNA Target Prediction. PMID:25153283
GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda. PMID:25077821
Single Nucleotide Polymorphisms Associated with MicroRNA Regulation. PMID:24970168
Construction and analysis of regulatory genetic networks in cervical cancer based on involved microRNAs, target genes, transcription factors and host genes. PMID:24944708
Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis. PMID:24809055
The Epstein Barr-encoded BART-6-3p microRNA affects regulation of cell growth and immuno response in Burkitt lymphoma. PMID:24731550
MiR-182 is up-regulated and targeting Cebpa in hepatocellular carcinoma. PMID:24653623
Network analysis of microRNAs, genes and their regulation in human bladder cancer. PMID:24649053
Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer. PMID:24618011
Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach. PMID:24564296
OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer. PMID:24428888
miR-638 regulates gene expression networks associated with emphysematous lung destruction. PMID:24380442
A systems' biology approach to study microRNA-mediated gene regulatory networks. PMID:24350286
Nodes and biological processes identified on the basis of network analysis in the brain of the senescence accelerated mice as an Alzheimer's disease animal model. PMID:24194717
Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks. PMID:24172660
The evolution of evolvability in microRNA target sites in vertebrates. PMID:24077390
Integrated gene network analysis and text mining revealing PIK3R1 regulated by miR-127 in human bladder cancer. PMID:24004856
Differences in microRNA expression during tumor development in the transition and peripheral zones of the prostate. PMID:23890084
Fine-tuning of microRNA-mediated repression of mRNA by splicing-regulated and highly repressive microRNA recognition element. PMID:23819653
iBIG: an integrative network tool for supporting human disease mechanism studies. PMID:23809576
PMTED: a plant microRNA target expression database. PMID:23725466
MicroRNA in Aging: From Discovery to Biology. PMID:23633914
TUMIR: an experimentally supported database of microRNA deregulation in various cancers. PMID:23594715
hLGDB: a database of human lysosomal genes and their regulation. PMID:23584836
Identification of novel pretranslational regulatory mechanisms for NF-κB activation. PMID:23515310
MicroRNAs: an emerging science in cancer epigenetics. PMID:23497588
Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles. PMID:23467572
Tertiary structure-based analysis of microRNA-target interactions. PMID:23417009
Regulatory microRNA network identification in bovine blastocyst development. PMID:23398486
Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools. PMID:23174015
Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome. PMID:23049969
Differentiation-associated microRNAs antagonize the Rb-E2F pathway to restrict proliferation. PMID:23027903
Computational analysis of noncoding RNAs. PMID:22991327
RhesusBase: a knowledgebase for the monkey research community. PMID:22965133
The architecture of the gene regulatory networks of different tissues. PMID:22962474
A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2. PMID:22954617
Novel direct targets of miR-19a identified in breast cancer cells by a quantitative proteomic approach. PMID:22952885
Dysfunctions associated with methylation, microRNA expression and gene expression in lung cancer. PMID:22912875
Identification of common carp (Cyprinus carpio) microRNAs and microRNA-related SNPs. PMID:22908890
Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs. PMID:22798498
Coordinated miRNA/mRNA expression profiles for understanding breed-specific metabolic characters of liver between Erhualian and large white pigs. PMID:22719927
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer. PMID:22691419
MicroRNAs: molecular features and role in cancer. PMID:22652795
IL-35 is a novel responsive anti-inflammatory cytokine--a new system of categorizing anti-inflammatory cytokines. PMID:22438968
MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia. PMID:22362744
MicroRNA dysregulation in cancer: diagnostics, monitoring and therapeutics. A comprehensive review. PMID:22351564
Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data. PMID:22303397
miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes. PMID:22276777
MicroRNAs and other mechanisms regulate interleukin-17 cytokines and receptors. PMID:22201969
Molecular profiling of aggressive lymphomas. PMID:22190944
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network. PMID:22176772
Computational methods for the identification of microRNA targets. PMID:22162940
IGDB.NSCLC: integrated genomic database of non-small cell lung cancer. PMID:22139933
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. PMID:22135297
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. PMID:22080514
Signalling pathway for RKIP and Let-7 regulates and predicts metastatic breast cancer. PMID:21873975
Assessing the utility of thermodynamic features for microRNA target prediction under relaxed seed and no conservation requirements. PMID:21674004
From snoRNA to miRNA: Dual function regulatory non-coding RNAs. PMID:21664409
Structural evidence of anti-atherogenic microRNAs. PMID:21622224
Shielding the messenger (RNA): microRNA-based anticancer therapies. PMID:21514318
IntmiR: a complete catalogue of intronic miRNAs of human and mouse. PMID:21423893
The liver-specific microRNA miR-122 controls systemic iron homeostasis in mice. PMID:21364282
Practical Aspects of microRNA Target Prediction. PMID:21342132
Identification of common microRNA-mRNA regulatory biomodules in human epithelial cancers. PMID:21340045
RepTar: a database of predicted cellular targets of host and viral miRNAs. PMID:21149264
Investigation gene and microRNA expression in glioblastoma. PMID:21143783
Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma. PMID:21114830
Profiling of regulatory microRNA transcriptomes in various biological processes: a review. PMID:21063068
Exprtarget: an integrative approach to predicting human microRNA targets. PMID:20975837
Alteration of microRNAs regulated by c-Myc in Burkitt lymphoma. PMID:20930934
A potential role for intragenic miRNAs on their hosts' interactome. PMID:20920310
Toward a complete in silico, multi-layered embryonic stem cell regulatory network. PMID:20890967
MicroRNAs as effectors of brain function with roles in ischemia and injury, neuroprotection, and neurodegeneration. PMID:20606686
Identifying targets of miR-143 using a SILAC-based proteomic approach. PMID:20544124
A MACHINE LEARNING APPROACH FOR miRNA TARGET PREDICTION. PMID:20514358
TargetSpy: a supervised machine learning approach for microRNA target prediction. PMID:20509939
Designing small multiple-target artificial RNAs. PMID:20453028
Survey of Computational Algorithms for MicroRNA Target Prediction. PMID:20436875
Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma. PMID:20420713
Improved microarray-based decision support with graph encoded interactome data. PMID:20419106
Flanking region sequence information to refine microRNA target predictions. PMID:20413915
High-risk myeloma is associated with global elevation of miRNAs and overexpression of EIF2C2/AGO2. PMID:20385818
High-throughput experimental studies to identify miRNA targets directly, with special focus on the mammalian brain. PMID:20380813
Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. PMID:20369013
Identification of microRNAs associated with hyperthermia-induced cellular stress response. PMID:20352393
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature. PMID:20233441
Network Properties for Ranking Predicted miRNA Targets in Breast Cancer. PMID:20224638
Got target? Computational methods for microRNA target prediction and their extension. PMID:20177143
MTar: a computational microRNA target prediction architecture for human transcriptome. PMID:20122191
microRNA expression profile and identification of miR-29 as a prognostic marker and pathogenetic factor by targeting CDK6 in mantle cell lymphoma. PMID:20086245
Computational methods to identify miRNA targets. PMID:20079866
Predicting miRNA's target from primary structure by the nearest neighbor algorithm. PMID:20041294
In silico method for systematic analysis of feature importance in microRNA-mRNA interactions. PMID:20015389
MicroRNAs in ovarian carcinomas. PMID:19903743
Chromosome 21-derived microRNAs provide an etiological basis for aberrant protein expression in human Down syndrome brains. PMID:19897480
Sequence context outside the target region influences the effectiveness of miR-223 target sites in the RhoB 3'UTR. PMID:19850724
Statistical use of argonaute expression and RISC assembly in microRNA target identification. PMID:19779550
Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms. PMID:19671526
A novel putative miRNA target enhancer signal. PMID:19649282
Regulatory element identification in subsets of transcripts: comparison and integration of current computational methods. PMID:19553345
Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. PMID:19534746
Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH. PMID:19478946
Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm. PMID:19478556
Increasing MicroRNA target prediction confidence by the relative R(2) method. PMID:19463832
Comprehensive analysis of the impact of SNPs and CNVs on human microRNAs and their regulatory genes. PMID:19458495
3'UTR-located ALU elements: donors of potential miRNA target sites and mediators of network miRNA-based regulatory interactions. PMID:19455205
Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. PMID:19435500
Regulation of glutamate receptor subunit availability by microRNAs. PMID:19433455
Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data. PMID:19432952
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression. PMID:19420067
MicroRNA profiling identifies miR-34a and miR-21 and their target genes JAG1 and WNT1 in the coordinate regulation of dendritic cell differentiation. PMID:19398721
dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation. PMID:19371411
MicroRNA-21 is up-regulated in allergic airway inflammation and regulates IL-12p35 expression. PMID:19342679
An integrative analysis of microRNA and mRNA expression--a case study. PMID:19259417
Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach. PMID:19253296
Revisiting the principles of microRNA target recognition and mode of action. PMID:19145236
miRNA regulation of cytokine genes. PMID:19121586
HuMiTar: a sequence-based method for prediction of human microRNA targets. PMID:19102780
MiRTif: a support vector machine-based microRNA target interaction filter. PMID:19091027
MicroRNA target prediction by expression analysis of host genes. PMID:19088304
MicroRNAs: control and loss of control in human physiology and disease. PMID:19030926
miRecords: an integrated resource for microRNA-target interactions. PMID:18996891
Expression patterns of microRNAs in the chorioamniotic membranes: a role for microRNAs in human pregnancy and parturition. PMID:18991333
The database of experimentally supported targets: a functional update of TarBase. PMID:18957447
miR2Disease: a manually curated database for microRNA deregulation in human disease. PMID:18927107
OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. PMID:18790807
MicroRNA regulation and the variability of human cortical gene expression. PMID:18617573
Systems approaches to identifying gene regulatory networks in plants. PMID:18616425
Identification and characteristics of microRNAs from Bombyx mori. PMID:18507836
miRDB: a microRNA target prediction and functional annotation database with a wiki interface. PMID:18426918
A scoring matrix approach to detecting miRNA target sites. PMID:18377655
Dissecting microregulation of a master regulatory network. PMID:18294391
Microribonucleic acid-21 increases aldosterone secretion and proliferation in H295R human adrenocortical cells. PMID:18218696
Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver. PMID:18158304
The microRNA.org resource: targets and expression. PMID:18158296
Experimental validation of miRNA targets. PMID:18158132
Investigation of miRNA biology by bioinformatic tools and impact of miRNAs in colorectal cancer--regulatory relationship of c-Myc and p53 with miRNAs. PMID:18079974
MicroRNA targets in immune genes and the Dicer/Argonaute and ARE machinery components. PMID:18061676
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. PMID:18029362
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. PMID:17994088
miRBase: tools for microRNA genomics. PMID:17991681
Reliable prediction of regulator targets using 12 Drosophila genomes. PMID:17989251
Prediction and validation of microRNA targets in animal genomes. PMID:17954966
miRGator: an integrated system for functional annotation of microRNAs. PMID:17942429
Prediction and preliminary validation of oncogene regulation by miRNAs. PMID:17877811
Vir-Mir db: prediction of viral microRNA candidate hairpins. PMID:17702763
Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3' untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes. PMID:17668390
A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants. PMID:17547750
Double-stranded regions are essential design components of potent inhibitors of RISC function. PMID:17400817
Distance constraints between microRNA target sites dictate efficacy and cooperativity. PMID:17389647
Human polymorphism at microRNAs and microRNA target sites. PMID:17360642
microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder. PMID:17326821
MicroTar: predicting microRNA targets from RNA duplexes. PMID:17254305
Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression. PMID:17242205
miRGen: a database for the study of animal microRNA genomic organization and function. PMID:17108354
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. PMID:17099231
MicroRNA promoter element discovery in Arabidopsis. PMID:16888323
RNAhybrid: microRNA target prediction easy, fast and flexible. PMID:16845047
The database of experimentally supported targets: a functional update of TarBase PubMed citations: 202.

202 articles citing: The database of experimentally supported targets: a functional update of TarBase

Posterior cingulate cortex reveals an expression profile of resilience in cognitively intact elders. PMID:35813880
Bioinformatics and System Biology Approach to Identify the Influences of COVID-19 on Rheumatoid Arthritis. PMID:35464423
Multiomics Topic Modeling for Breast Cancer Classification. PMID:35267458
A Non-Canonical Link between Non-Coding RNAs and Cardiovascular Diseases. PMID:35203652
Predicting miRNA targets for hepatocellular carcinoma with an integrated method. PMID:35117522
Systematic Review: microRNAs as Potential Biomarkers in Mild Cognitive Impairment Diagnosis. PMID:35095478
An Ensemble Method to Predict Target Genes and Pathways in Uveal Melanoma. PMID:33817073
An evolutionarily acquired microRNA shapes development of mammalian cortical projections. PMID:33139574
The microRNA target site landscape is a novel molecular feature associating alternative polyadenylation with immune evasion activity in breast cancer. PMID:32844230
3'-UTR Shortening Contributes to Subtype-Specific Cancer Growth by Breaking Stable ceRNA Crosstalk of Housekeeping Genes. PMID:32411683
Circulating microRNA let‑7e is decreased in knee osteoarthritis, accompanied by elevated apoptosis and reduced autophagy. PMID:32323821
Germinal Centre B Cell Functions and Lymphomagenesis: Circuits Involving MYC and MicroRNAs. PMID:31683676
MLMDA: a machine learning approach to predict and validate MicroRNA-disease associations by integrating of heterogenous information sources. PMID:31395072
Circulating miRs-183-5p, -206-3p and -381-3p may serve as novel biomarkers for 4,4'-methylene diphenyl diisocyanate exposure. PMID:30074411
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Systematic prediction of target genes and pathways in cervical cancer from microRNA expression data. PMID:29928371
3' UTR shortening represses tumor-suppressor genes in trans by disrupting ceRNA crosstalk. PMID:29785014
Serum microRNAs as predictors of risk for non-muscle invasive bladder cancer. PMID:29599914
Model-based analysis of competing-endogenous pathways (MACPath) in human cancers. PMID:29565967
Regulatory network involving miRNAs and genes in serous ovarian carcinoma. PMID:29113276
Correlation analyses revealed global microRNA-mRNA expression associations in human peripheral blood mononuclear cells. PMID:28879530
Expression signatures and roles of MicroRNAs in human oesophageal adenocarcinomas. PMID:28799211
Screening of potentially crucial genes and regulatory factors involved in epithelial ovarian cancer using microarray analysis. PMID:28693226
SPARC overexpression alters microRNA expression profiles involved in tumor progression. PMID:28435518
Bioinformatic identification of candidate genes induced by trichostatin A in BGC-823 gastric cancer cells. PMID:28356958
Colorectal adenoma and carcinoma specific miRNA profiles in biopsy and their expression in plasma specimens. PMID:28289479
miRNAs target databases: developmental methods and target identification techniques with functional annotations. PMID:28204845
Analysis of miRNA, mRNA, and TF interactions through network-based methods. PMID:28194173
MiRNATIP: a SOM-based miRNA-target interactions predictor. PMID:28185545
Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PMID:28103241
Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data. PMID:27992375
Regulatory network analysis of genes and microRNAs in human hepatoblastoma. PMID:27895778
Comparative Analyses of MicroRNA Microarrays during Cardiogenesis: Functional Perspectives. PMID:27605182
A path-based measurement for human miRNA functional similarities using miRNA-disease associations. PMID:27585796
Network analysis of microRNAs, transcription factors, target genes and host genes in human anaplastic astrocytoma. PMID:27347075
Comprehensive analysis of high-throughput screens with HiTSeekR. PMID:27330136
Identification of circulating microRNAs during the liver neoplastic process in a murine model of hereditary tyrosinemia type 1. PMID:27282650
Identification of prognostic biomarkers in glioblastoma using a long non-coding RNA-mediated, competitive endogenous RNA network. PMID:27229531
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. PMID:27207881
STarMirDB: A database of microRNA binding sites. PMID:27144897
ImiRP: a computational approach to microRNA target site mutation. PMID:27122020
Mapping Human Pluripotent-to-Cardiomyocyte Differentiation: Methylomes, Transcriptomes, and Exon DNA Methylation "Memories". PMID:26981572
Construction and analysis of three networks of genes and microRNAs in adenocarcinoma. PMID:26722320
microRNA and gene networks in human laryngeal cancer. PMID:26668624
Network analysis of microRNAs and genes in human osteosarcoma. PMID:26622516
Regulation signature of miR-143 and miR-26 in porcine Salmonella infection identified by binding site enrichment analysis. PMID:26589421
AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure. PMID:26589271
Identification of miR-10b, miR-26a, miR-146a and miR-153 as potential triple-negative breast cancer biomarkers. PMID:26392359
Computational functional genomics based analysis of pain-relevant micro-RNAs. PMID:26385553
Prognostic significance of NPM1 mutation-modulated microRNA-mRNA regulation in acute myeloid leukemia. PMID:26376228
Circulating MicroRNA-30d Is Associated With Response to Cardiac Resynchronization Therapy in Heart Failure and Regulates Cardiomyocyte Apoptosis: A Translational Pilot Study. PMID:25995320
An overview of microRNAs. PMID:25979468
TMREC: A Database of Transcription Factor and MiRNA Regulatory Cascades in Human Diseases. PMID:25932650
miREC: a database of miRNAs involved in the development of endometrial cancer. PMID:25889518
An integrated network of microRNA and gene expression in ovarian cancer. PMID:25860109
Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks. PMID:25707690
Screening for characteristic microRNAs between pre-invasive and invasive stages of cervical cancer. PMID:25695263
The network of microRNAs, transcription factors, target genes and host genes in human renal cell carcinoma. PMID:25436016
Genome-wide analysis of miRNA and mRNA transcriptomes during amelogenesis. PMID:25406666
What do all the (human) micro-RNAs do? PMID:25404408
Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. PMID:25378249
Update on non-canonical microRNAs. PMID:25372759
MicroRNA and gene networks in human diffuse large B-cell lymphoma. PMID:25289101
A tri-component conservation strategy reveals highly confident microRNA-mRNA interactions and evolution of microRNA regulatory networks. PMID:25054916
MicroRNAs MiR-218, MiR-125b, and Let-7g predict prognosis in patients with oral cavity squamous cell carcinoma. PMID:25050621
Copy number variable microRNAs in schizophrenia and their neurodevelopmental gene targets. PMID:25034949
Cross-platform toxicogenomics for the prediction of non-genotoxic hepatocarcinogenesis in rat. PMID:24830643
Identification of miRNA-mediated core gene module for glioma patient prediction by integrating high-throughput miRNA, mRNA expression and pathway structure. PMID:24809850
Integrating omics technologies to study pulmonary physiology and pathology at the systems level. PMID:24802001
Air toxics and epigenetic effects: ozone altered microRNAs in the sputum of human subjects. PMID:24771714
Investigating microRNA-target interaction-supported tissues in human cancer tissues based on miRNA and target gene expression profiling. PMID:24756070
Next Generation Sequencing of miRNAs - Strategies, Resources and Methods. PMID:24710011
NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes. PMID:24608173
A networks method for ranking microRNA dysregulation in cancer. PMID:24564923
Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma. PMID:24564407
Post-transcriptional regulation of human breast cancer cell proteome by unliganded estrogen receptor β via microRNAs. PMID:24525454
Evolutionary comparisons of miRNA regulation system in six model organisms. PMID:24515651
Construction of pancreatic cancer double-factor regulatory network based on chip data on the transcriptional level. PMID:24469724
ISAAC - InterSpecies Analysing Application using Containers. PMID:24428905
Efficient computation of minimal perturbation sets in gene regulatory networks. PMID:24391592
Discovery and visualization of miRNA-mRNA functional modules within integrated data using bicluster analysis. PMID:24357407
Prenatal arsenic exposure and the epigenome: altered microRNAs associated with innate and adaptive immune signaling in newborn cord blood. PMID:24327377
Genome-wide analysis of human microRNA stability. PMID:24187663
microRNA and gene networks in human pancreatic cancer. PMID:24137477
Imprinted and X-linked non-coding RNAs as potential regulators of human placental function. PMID:24081302
BayMiR: inferring evidence for endogenous miRNA-induced gene repression from mRNA expression profiles. PMID:24001276
ProteoMirExpress: inferring microRNA and protein-centered regulatory networks from high-throughput proteomic and mRNA expression data. PMID:23924514
RFMirTarget: predicting human microRNA target genes with a random forest classifier. PMID:23922946
Inferring potential microRNA-microRNA associations based on targeting propensity and connectivity in the context of protein interaction network. PMID:23874989
Joint analysis of expression profiles from multiple cancers improves the identification of microRNA-gene interactions. PMID:23772050
A new algorithm for integrated analysis of miRNA-mRNA interactions based on individual classification reveals insights into bladder cancer. PMID:23717626
The microRNA-200 family targets multiple non-small cell lung cancer prognostic markers in H1299 cells and BEAS-2B cells. PMID:23708087
Functional profiling of precursor MicroRNAs identifies MicroRNAs essential for glioma proliferation. PMID:23577178
miR-26a plays an important role in cell cycle regulation in ACTH-secreting pituitary adenomas by modulating protein kinase Cδ. PMID:23525216
miRTar Hunter: a prediction system for identifying human microRNA target sites. PMID:23475422
Novel pancreatic endocrine maturation pathways identified by genomic profiling and causal reasoning. PMID:23418498
Potential roles of microRNAs in regulating long intergenic noncoding RNAs. PMID:23369519
mirTarPri: improved prioritization of microRNA targets through incorporation of functional genomics data. PMID:23326485
miR-203 regulates cell proliferation through its influence on Hakai expression. PMID:23285092
Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges. PMID:23251139
One decade of development and evolution of microRNA target prediction algorithms. PMID:23200135
Identifying miRNAs, targets and functions. PMID:23175680
Sequence fingerprints of microRNA conservation. PMID:23110219
Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome. PMID:23049969
A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2. PMID:22954617
miRNA regulation of gene expression: a predictive bioinformatics analysis in the postnatally developing monkey hippocampus. PMID:22952683
RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model. PMID:22923300
Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match. PMID:22915600
miRSystem: an integrated system for characterizing enriched functions and pathways of microRNA targets. PMID:22870325
Antagonism pattern detection between microRNA and target expression in Ewing's sarcoma. PMID:22848594
MicroRNA expression in tumor cells from Waldenstrom's macroglobulinemia reflects both their normal and malignant cell counterparts. PMID:22829168
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach. PMID:22759612
Oncogenic B-Raf signaling in melanoma cells controls a network of microRNAs with combinatorial functions. PMID:22751131
Coordinated miRNA/mRNA expression profiles for understanding breed-specific metabolic characters of liver between Erhualian and large white pigs. PMID:22719927
Genetic architecture of microRNA expression: implications for the transcriptome and complex traits. PMID:22658545
MicroRNAs: molecular features and role in cancer. PMID:22652795
Computational identification and experimental validation of microRNAs binding to the Alzheimer-related gene ADAM10. PMID:22594617
Extent, causes, and consequences of small RNA expression variation in human adipose tissue. PMID:22589741
microRNA dysregulation in prostate cancer: network analysis reveals preferential regulation of highly connected nodes. PMID:22589088
miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations. PMID:22583976
Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis. PMID:22549745
MicroRNAs in inner ear biology and pathogenesis. PMID:22484222
Impact of microRNA regulation on variation in human gene expression. PMID:22456605
RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans. PMID:22454234
Bioinformatic Resources of microRNA Sequences, Gene Targets, and Genetic Variation. PMID:22403585
Optimal use of conservation and accessibility filters in microRNA target prediction. PMID:22384176
miRTrail--a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. PMID:22356618
miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines. PMID:22348086
Quantification of miRNA-mRNA interactions. PMID:22348024
Identification of microRNA-regulated gene networks by expression analysis of target genes. PMID:22345618
Catalog of microRNA seed polymorphisms in vertebrates. PMID:22303453
Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data. PMID:22303397
Integrative survival-based molecular profiling of human pancreatic cancer. PMID:22261810
The murine caecal microRNA signature depends on the presence of the endogenous microbiota. PMID:22211115
MicroRNAs and other mechanisms regulate interleukin-17 cytokines and receptors. PMID:22201969
Molecular links between cellular senescence, longevity and age-related diseases - a systems biology perspective. PMID:22184282
Computational methods for the identification of microRNA targets. PMID:22162940
A systematic analysis on DNA methylation and the expression of both mRNA and microRNA in bladder cancer. PMID:22140553
AutismKB: an evidence-based knowledgebase of autism genetics. PMID:22139918
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. PMID:22135297
miREE: miRNA recognition elements ensemble. PMID:22115078
Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes. PMID:22080562
Network analysis of microRNAs and their regulation in human ovarian cancer. PMID:22050994
MultiMiTar: a novel multi objective optimization based miRNA-target prediction method. PMID:21949731
Impact of host genes and strand selection on miRNA and miRNA* expression. PMID:21909367
MIRTFnet: analysis of miRNA regulated transcription factors. PMID:21857930
Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data. PMID:21821656
BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation. PMID:21696594
The characterisation of three types of genes that overlie copy number variable regions. PMID:21637334
Structural evidence of anti-atherogenic microRNAs. PMID:21622224
mirConnX: condition-specific mRNA-microRNA network integrator. PMID:21558324
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. PMID:21551220
Modification of gene duplicability during the evolution of protein interaction network. PMID:21490719
Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems. PMID:21450054
HOCTAR database: a unique resource for microRNA target prediction. PMID:21435384
Integrating microRNAs into a system biology approach to acute lung injury. PMID:21420028
The accumulation of gene regulation through time. PMID:21398425
A curated database of miRNA mediated feed-forward loops involving MYC as master regulator. PMID:21390222
NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs. PMID:21364759
GARNET--gene set analysis with exploration of annotation relations. PMID:21342555
Practical Aspects of microRNA Target Prediction. PMID:21342132
dPORE-miRNA: polymorphic regulation of microRNA genes. PMID:21326606
Integrated profiling of microRNAs and mRNAs: microRNAs located on Xq27.3 associate with clear cell renal cell carcinoma. PMID:21253009
Involvement of microRNAs in physiological and pathological processes in the lung. PMID:21092244
miRTarBase: a database curates experimentally validated microRNA-target interactions. PMID:21071411
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. PMID:21037263
miRBase: integrating microRNA annotation and deep-sequencing data. PMID:21037258
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. PMID:21036869
Exprtarget: an integrative approach to predicting human microRNA targets. PMID:20975837
Human microRNA oncogenes and tumor suppressors show significantly different biological patterns: from functions to targets. PMID:20927335
MicroRNA in ischemic stroke etiology and pathology. PMID:20841499
A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. PMID:20835247
Global Egr1-miRNAs binding analysis in PMA-induced K562 cells using ChIP-Seq. PMID:20811575
MicroSNiPer: a web tool for prediction of SNP effects on putative microRNA targets. PMID:20809528
Structural basis of microRNA length variety. PMID:20739353
CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse. PMID:20731828
TAM: a method for enrichment and depletion analysis of a microRNA category in a list of microRNAs. PMID:20696049
MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain. PMID:20647238
Plant microRNAs and their role in defense against viruses: a bioinformatics approach. PMID:20594353
microRNA evolution in a human transcription factor and microRNA regulatory network. PMID:20584335
Detecting microRNA activity from gene expression data. PMID:20482775
Epigenetic regulation of WNT signaling in chronic lymphocytic leukemia. PMID:20473358
Identification of microRNAs associated with hyperthermia-induced cellular stress response. PMID:20352393
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature. PMID:20233441
Altered expression of microRNAs in the myocardium of rats with acute myocardial infarction. PMID:20187981
Got target? Computational methods for microRNA target prediction and their extension. PMID:20177143
Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals. PMID:20144220
PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes. PMID:20089154
miRMaid: a unified programming interface for microRNA data resources. PMID:20074352
Computational approaches for microRNA studies: a review. PMID:20012966
Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy. PMID:20003267
MicroRNA expression in squamous cell carcinoma and adenocarcinoma of the esophagus: associations with survival. PMID:19789312
Malate dehydrogenase is negatively regulated by miR-1 in Trichomonas vaginalis. PMID:19777264
Accurate microRNA target prediction correlates with protein repression levels. PMID:19765283
Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. PMID:19671175
microRNAs in CNS disorders. PMID:19536656
Reexamining microRNA site accessibility in Drosophila: a population genomics study. PMID:19478854
Comprehensive analysis of the impact of SNPs and CNVs on human microRNAs and their regulatory genes. PMID:19458495
MicroRNAs and cardiac pathology. PMID:19434076
DIANA-microT web server: elucidating microRNA functions through target prediction. PMID:19406924
Primary biliary cirrhosis is associated with altered hepatic microRNA expression. PMID:19345069
Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009. PMID:19033364

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experimental measurement
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experimentally determined
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free text
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gene silencing by mirna (microrna)
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micro rna
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untranslated rna
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functional, regulatory and non-coding rna
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molecular interactions, pathways and networks
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microarray experiment
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data submission, annotation and curation
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