Tag: protein family


Found 85 sources
Source Match ReputationScore*

MetaCyc


MetaCyc is the largest curated collection of metabolic pathways currently available. It provides a comprehensive resource for metabolic pathways and enzymes from all domains of life. The pathways in MetaCyc are experimentally determined, small-molecu ...
100%

ConoServer


ConoServer is a database specializing in sequences and structures of peptides expressed by marine cone snails. The database gives access to protein sequences, nucleic acid sequences and structural information on conopeptides. ConoServer's data are fi ...
98%

Information system for G protein-coupled receptors (GPCRs)


The GPCRDB is a molecular-class information system that collects, combines, validates and stores large amounts of heterogenous data on G protein-coupled receptors (GPCRs). The GPCRDB contains data on sequences, ligand binding constants and mutations. ...
92%

LIPID MAPS


The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIP ...
91%

Restriction enzymes and methylases database


A collection of information about restriction enzymes and related proteins. It contains published and unpublished references, recognition and cleavage sites, isoschizomers, commercial availability, methylation sensitivity, crystal, genome, and sequen ...
89%

Termini-Oriented Protein Function INferred Database


TopFIND is a protein-centric database for the annotation of protein termini currently in its third version. Non-canonical protein termini can be the result of multiple different biological processes, including pre-translational processes such as alte ...
80%

ARAMEMNON


ARAMEMNON is a curated database for Arabidopsis thaliana transmembrane (TM) proteins and transporters. The database compiles topology and signal sequence predictions and displays the results in a directly comparable graphical output format for presen ...
76%

Bacterial protein tYrosine Kinase database


The Bacterial protein tYrosine Kinase database (BYKdb) contains computer-annotated BY-kinase sequences. The database web interface allows static and dynamic queries and provides integrated analysis tools including sequence annotation.
75%

Major Intrinsic Proteins Modification Database


This is a database of comparative protein structure models of the MIP (Major Intrinsic Protein) family of proteins. The MIPs have been identified from the completed genome sequence of organisms available at NCBI.
74%

The human DEPhOsphorylation Database


DEPOD - the human DEPhOsphorylation Database is a manually curated database collecting human active and inactive phosphatases, their experimentally verified protein and non-protein substrates, and dephosphorylation site information, and pathways in w ...
74%

Bactibase: database dedicated to bacteriocins


BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by both Gram-positive and Gram-negative bacteria. The information in this database is very easy to extract and allows rapid prediction of relationships str ...
74%

MoonProt


MoonProt Database is a manually curated, searchable, internet-based resource with information about the over 200 proteins that have been experimentally verified to be moonlighting proteins. Moonlighting proteins comprise a class of multifunctional pr ...
72%

Human Histone Database


HIstome (Human histone database) is a freely available, specialist, electronic database dedicated to display information about human histone variants, sites of their post-translational modifications and about various histone modifying enzymes.
72%

Non-Ribosomal Peptides Database


Norine is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains more than 1000 peptides.
72%

PeroxiBase


Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.
69%

Telomerase Database


The Telomerase Database is a Web-based tool for the study of structure, function, and evolution of the telomerase ribonucleoprotein. The objective of this database is to serve the research community by providing a comprehensive compilation of informa ...
68%

NucleaRDB


Families of nuclear hormone receptors
68%

SuperCYP


Cytochrome P450 alleles and drug interactions
68%

CLIPZ


Experimentally-determined binding sites of RNA-binding proteins
67%

cpnDB


Chaperonins are a diverse family of molecular chaperones present in the plastids, mitochondria, and cytoplasm of eukaryotes, and in bacteria and archaea. The family is divided into group I (CPN60, also known as Hsp60 or GroEL, found in bacteria, some ...
67%

KnotProt: A database of proteins with knots and slipknots


KnotProt collects information about proteins with knots or slipknots. The knotting complexity of proteins is presented in the form of a matrix diagram that shows users the knot type of the entire polypeptide chain and of each of its subchains. The da ...
66%

Knottin database


The KNOTTIN database provides standardized data on the knottin structural family (also referred to as the "Inhibitor Cystine Knot (ICK) motif/family/fold").
65%

Polbase


Polbase is an open and searchable database providing information from published and unpublished sources on the biochemical, genetic, and structural information of DNA polymerases.
65%

PREX


PeroxiRedoxin classification indEX
64%

Olfactory Receptor Database


ORDB began as a database of vertebrate OR genes and proteins and continues to support sequencing and analysis of these receptors by providing a comprehensive archive with search tools for this expanding family.
64%

Death Domain Database


Death Domain Database is a manually curated database of protein-protein interactions for Death Domain Superfamily.
62%

Prokaryotic Glycoproteins Database


ProGlycProt (Prokaryotic Glycoproteins) is a manually curated, comprehensive repository of experimentally characterized eubacterial and archaeal glycoproteins, generated from an exhaustive literature search. This is the focused beginning of an effort ...
62%

gpDB


GpDB is a publicly accessible, relational database of G-proteins and their interactions with GPCRs and effector molecules. The sequences are classified according to a hierarchy of different classes, families and sub-families, based on extensive liter ...
62%

PLANT-PIs


Plant protease inhibitors (PIs) can be counted among the defensive proteins that plants display to minimize the adverse effects deriving from the attack of phytophagous insects. They are usually present in seeds and storage tissues, but are also expr ...
62%

OMPdb


Beta-barrel outer membrane proteins from Gram-negative bacteria
61%

ThYme


Thioester-active enzymes
61%

ProRepeat: An Integrated Repository for Studying Amino Acid Tandem Repeats in Proteins


ProRepeat is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats. ProRepeat collects repeats from all proteins included in the UniProt knowledgebase, together wit ...
60%

ADPriboDB


ADP-ribosylated proteins and sites
60%

TRIP


Protein-protein interactions for mammalian TRP channels
58%

VKCDB - Voltage-gated K+ Channel Database


Voltage-gated potassium channel database
58%

Functional Coverage of the Proteome


FCP is a publicly accessible web tool dedicated to analysing the current state and trends on the population of available structures along the classification schemes of enzymes and nuclear receptors, offering both graphical and quantitative data on th ...
56%

Laminin Database


Laminins (LM) correspond to a large number of heretotrimeric glycoproteins, playing and a major role in several cell functions, including differentiation, proliferation, adhesion, and migration [1-3]. In addition to binding to other extracellular mat ...
55%

3DIV


Three-dimensional (3D) chromatin structure is an emerging paradigm for understanding gene regulation mechanisms. Hi-C (high-throughput chromatin conformation capture), a method to detect long-range chromatin interactions, allows extensive genome-wide ...
54%

Cyanolyase


Sequences and motifs of the phycobilin lyase protein family
50%

Lipase Engineering Database


The Lipase Engineering Database (http://www.led.uni-stuttgart.de) integrates information on sequence, structure, and function of lipases, esterases, and related proteins. Sequence data on 806 protein entries are assigned to 38 homologous families, wh ...
50%

KLIFs


Kinase-ligand Interaction Fingerprints and Structures
50%

UCSD-Nature Signaling Gateway Molecule Pages


Expert-authored and peer-reviewed information on mammalian proteins involved in cellular signaling
50%

HIV RT and Protease Sequence Database


The HIV Reverse Transcriptase and Protease Sequence Database is an on-line relational database that catalogues evolutionary and drug-related sequence variation in the human immunodeficiency virus (HIV) reverse transcriptase (RT) and protease enzymes, ...
50%

Protein kinase resource


The Protein Kinase Resource (PKR) is a curated information source which provides an integrated view of sequence and structure data combined with biochemical and genetic function data focused on a single family of proteins, the protein kinases. In add ...
47%

KIDFamMap


Kinase-inhibitor-disease family map
47%

Heme Protein Database


Heme types, protein structures, axial ligands and Em values
47%

RPG - Ribosomal Protein Gene database


Ribosomal protein gene database
47%

Wnt Database


Wnt proteins form a family of highly conserved secreted signaling molecules that regulate cell-to-cell interactions during embryogenesis. Wnt genes and Wnt signaling are also implicated in cancer. Insights into the mechanisms of Wnt action have emerg ...
47%

Kinomer


Classification of protein kinases encoded in various eukatotic species
47%

PlantTribes


Families of protein-coding genes from five sequenced plant species
47%

Defensins Knowledgebase


The defensins knowledgebase is a manually curated database and information source devoted to the defensin family of antimicrobial peptides. The current version of the database holds a comprehensive collection of over 350 defensin records each contain ...
47%

DoBISCUIT


Database Of BIoSynthesis clusters CUrated and InTegrated
47%

WDSPdb


WD40 domain structure predictions
47%

SelenoDB


A database of selenoprotein genes, proteins and SECIS elements
47%

DAnCER


Disease-Annotated Chromatin Epigenetics Resource
47%

ChromDB


Chromatin-associated proteins in a broad range of organisms
47%

iUUCD


The ubiquitin and ubiquitin-like (Ub/Ubl) conjugation is one of the most important post- translational modifications (PTMs) in proteins, and regulates a large number of cellular processes, such as cell cycle, signal transduction, apoptosis and auto ...
47%

PLPMDB


Pyridoxal-5'-phosphate dependent enzymes mutations
47%

UUCD


Ubiquitin and ubiquitin-like conjugation database
47%

GPCR NaVa database


The GPCR NaVa database describes sequence variants within the family of human G Protein-Coupled Receptors (GPCRs). GPCRs regulate many physiological functions and are the targets for most of today's medicines. The acronym NaVa stands for Natural Vari ...
47%

Ribonuclease P Database


RNase P sequences, alignments, and structures
47%

PHYTOPROT


Clusters of predicted plant proteins
47%

PyIgClassify


Clusters of conformations of antibody CDRs
47%

ZiFDB


Zinc Finger DataBase
47%

WERAM


Writers, Erasers and Readers of Histone Acetylation and Methylation
47%

RaftProt


Lipid raft associated proteins in mammals
47%

TransportDB


Sequences and classification of predicted membrane transporters encoded in complete genomes
47%

Animal Toxin Database


Database of animal toxins
47%

CyMoBase


CyMoBase is an online database for manually annotated protein sequences of cytoskeletal and motor proteins and associated information. It currently offers more than 3000 sequences from 26 proteins in more than 350 species. Meta information linked to ...
47%

Degradome Database


Proteases, protease inhibitors and protease mutations in human, chimpanzee, mouse, and rat
47%

EENdb


Engineered endonucleases: zinc finger nucleases and transcription activator-like effector nucleases
47%

OKCAM - now available at RhesusBase


Ontology-based Knowledgebase for Cell Adhesion Molecules
47%

SENTRA


SENTRA (http://www.ncbi.nlm.nih.gov/Complete_Genomes/SignalCensus.html) is a database of proteins associated with microbial signal transduction. The database currently includes the classical two-component signal transduction pathway proteins and meth ...
47%

NURSA


NURSA is a resource within which bioinformatic and bench research efforts in the field of nuclear receptors can be pursued in a synergistic and multidisciplinary approach, using a common technological platform. The primary directive of the NURSA prog ...
47%

SDAP


SDAP (Structural Database of Allergenic Proteins) is a Web server that provides rapid, cross-referenced assess to the sequences, structures, and IgE epitopes of allergenic proteins. The SDAP core is a series of CGI scripts that process the user queri ...
47%

CSDBase - Cold Shock Domain database


CSDBase (http://www.chemie.uni-marburg.de/~csdbase/) is an interactive Internet-embedded research platform providing detailed information on cold shock domain-containing proteins and bacterial cold shock responses. In its second release, access to CS ...
47%

LOX-DB


Due to their involvement in several diseases like cancer, inflammation, fever or arthritis, a lot of research is done on lipoxygenases yielding information about sequence, structure and function of these proteins. The LipOXygenases-DataBase (LOX-DB) ...
47%

CREMOFAC


CREMOFAC is a dedicated web-database for ATP and Non-ATP dependent chromatin-remodeling factors. The database harbors factors from 49 different organisms reported in literature and facilitates a comprehensive search for them. It provides in-depth inf ...
47%

SEVENS


Seven-transmembrane-helix receptors (7-TMR), known as G-protein-coupled receptors [1], are important genes that work as the gateway of signal transudation induced by ligand binding. Recent progress in determination of human draft sequences [2,3] acce ...
47%

Peptaibol


The Peptaibol Database is a sequence and structure resource for the unusual class of peptides known as peptaibols. The database includes sequence, biological source, and bibliographical data for the naturally-occurring peptaibols. Information is also ...
47%

DSD


Dehydrogenase enzymes belong to the oxidoreductase class and utilise the coenzymes NAD and NADP. Stereo-selectivity is focused on the C4 hydrogen atoms of the nicotinamide ring of NAD(P). Depending upon which hydrogen is transferred at the C4 locatio ...
47%

EROP-Moscow


Natural oligopeptides may regulate nearly all vital processes. To date, the chemical structures of nearly 6000 oligopeptides have been identified from more than 1000 organisms representing all the biological kingdoms. We have compiled the known physi ...
47%

RNRdb


RNRdb - the Ribonucleotide Reductase Database - is a tool developed for ribonucleotide reductase (RNR) research. RNR is an enzyme that uses radical chemistry to reduce ribonucleotides to deoxyribonucleotides. Since this is the only pathway for the de ...
47%

PlantsP/PlantsT


As one database with two functionally different web interfaces, PlantsP and PlantsT are plant-specific curated databases that combine sequence derived information with experimental functional genomics data. PlantsP focuses on proteins involved in the ...
47%

SRPDB


Signal recognition particle (SRP) is an ribonucleoprotein particle designed to recognize secretory signal sequences as they emerge from the ribosome. SRP associates with the SRP-receptor in the ER membrane, is released from the ribosome, and recycled ...
47%

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