Bactibase: database dedicated to bacteriocins
Names
More detailed information about this field from each metasource.
Bactibase: database dedicated to bacteriocins
metasource: Fairsharing.org
version: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
BACTIBASE
metasource: Fairsharing.org
version: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
a database dedicated to bacteriocins
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Bactibase: database dedicated to bacteriocins
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
BACTIBASE
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
a database dedicated to bacteriocins
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
Other names: BACTIBASE, a database dedicated to bacteriocins
Names
More detailed information about this field from each metasource.
Bactibase: database dedicated to bacteriocins
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
BACTIBASE
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
a database dedicated to bacteriocins
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by both Gram-positive and Gram-negative bacteria. The information in this database is very easy to extract and allows rapid prediction of relationships structure/function and target organisms of these peptides and therefore better exploitation of their biological activity in both the medical and food sectors.
Description
More detailed information about this field from each metasource.
BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by both Gram-positive and Gram-negative bacteria. The information in this database is very easy to extract and allows rapid prediction of relationships structure/function and target organisms of these peptides and therefore better exploitation of their biological activity in both the medical and food sectors.
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
Bacteriocin natural antimicrobial peptides
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://bactibase.pfba-lab-tun.org/main.phpWebpage
More detailed information about this field from each metasource.
http://bactibase.pfba-lab-tun.org/main.php
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://bactibase.hammamilab.org/main.php
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
Licence:
Name: BACTIBASE Terms of UseLicence name
More detailed information about this field from each metasource.
BACTIBASE Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
ODC
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://bactibase.pfba-lab-tun.org/terms.php
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://opendatacommons.org/licenses/pddl/1.0/
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
BACTIBASE second release: a database and tool platform for bacteriocin characterization
PMID: 20105292
metasource: Fairsharing.org
version: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
BACTIBASE: a new web-accessible database for bacteriocin characterization
PMID: 17941971
metasource: Fairsharing.org
version: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.biomedcentral.com/1471-2180/7/89
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
BACTIBASE second release: a database and tool platform for bacteriocin characterization
PMID: 20105292
metasource: Fairsharing.org
version: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
BACTIBASE: a new web-accessible database for bacteriocin characterization
PMID: 17941971
metasource: Fairsharing.org
version: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.biomedcentral.com/1471-2180/7/89
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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BACTIBASE second release: a database and tool platform for bacteriocin characterization
PubMed citations: 98.
98 articles citing: BACTIBASE second release: a database and tool platform for bacteriocin characterization
Emerging Computational Approaches for Antimicrobial Peptide Discovery. PMID:35884190
PR-1-Like Protein as a Potential Target for the Identification of Fusarium oxysporum: An In Silico Approach. PMID:35822818
Anti-adhesion and Anti-inflammatory Potential of the Leaderless Class IIb Bacteriocin Enterocin DD14. PMID:35604525
In Vitro and In Silico Based Approaches to Identify Potential Novel Bacteriocins from the Athlete Gut Microbiome of an Elite Athlete Cohort. PMID:35456752
Traditional and Computational Screening of Non-Toxic Peptides and Approaches to Improving Selectivity. PMID:35337121
Machine Learning Prediction of Antimicrobial Peptides. PMID:35298806
Garvicin KS, a Broad-Spectrum Bacteriocin Protects Zebrafish Larvae against Lactococcus garvieae Infection. PMID:35269976
Bacteriocin-Based Synergetic Consortia: a Promising Strategy to Enhance Antimicrobial Activity and Broaden the Spectrum of Inhibition. PMID:35170996
Gastrointestinal Stability and Cytotoxicity of Bacteriocins From Gram-Positive and Gram-Negative Bacteria: A Comparative in vitro Study. PMID:35145490
Targeted Genome Mining Reveals the Psychrophilic Clostridium estertheticum Complex as a Potential Source for Novel Bacteriocins, Including Cesin A and Estercticin A. PMID:35095812
Identification and Characterization of a Two-Peptide Class IIb Bacteriocin in Streptococcus pluranimalium Isolated from the Nasal Cavity of a Healthy Pig. PMID:35067836
Genome Mining of Pseudomonas Species: Diversity and Evolution of Metabolic and Biosynthetic Potential. PMID:34946606
Susceptibility to Nisin, Bactofencin, Pediocin and Reuterin of Multidrug Resistant Staphylococcus aureus, Streptococcus dysgalactiae and Streptococcus uberis Causing Bovine Mastitis. PMID:34827356
Gut Microbiota is an Important Source of Bacteriocins and Their In Situ Expression Can Be Explored for Treatment of Bacterial Infections. PMID:34523112
Peptipedia: a user-friendly web application and a comprehensive database for peptide research supported by Machine Learning approach. PMID:34478499
Genomic and proteomic comparisons of bacteriocins in probiotic species Lactobacillus and Bifidobacterium and inhibitory ability of Escherichia coli MG 1655. PMID:34258243
Characterization of a Lactiplantibacillus plantarum R23 Isolated from Arugula by Whole-Genome Sequencing and Its Bacteriocin Production Ability. PMID:34063896
In silico Approaches for the Design and Optimization of Interfering Peptides Against Protein-Protein Interactions. PMID:33996914
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples. PMID:33970536
The rumen eukaryotome is a source of novel antimicrobial peptides with therapeutic potential. PMID:33832427
Genome Mining and Characterization of Biosynthetic Gene Clusters in Two Cave Strains of Paenibacillus sp. PMID:33505378
Ensemble-AMPPred: Robust AMP Prediction and Recognition Using the Ensemble Learning Method with a New Hybrid Feature for Differentiating AMPs. PMID:33494403
Natural bacterial isolates as an inexhaustible source of new bacteriocins. PMID:33394148
Identification of biomarkers for the accurate and sensitive diagnosis of three bacterial pneumonia pathogens using in silico approaches. PMID:33218302
High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus. PMID:33096980
Kunkecin A, a New Nisin Variant Bacteriocin Produced by the Fructophilic Lactic Acid Bacterium, Apilactobacillus kunkeei FF30-6 Isolated From Honey Bees. PMID:33042078
Ocins database: a database of bug-busters from Bifidobacterium, Lactobacillus, and Enterococcus. PMID:32974523
Bacteriocins as a new generation of antimicrobials: toxicity aspects and regulations. PMID:32876664
Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment. PMID:32858915
LAMP2: a major update of the database linking antimicrobial peptides. PMID:32844169
Evidence Supporting an Antimicrobial Origin of Targeting Peptides to Endosymbiotic Organelles. PMID:32731621
Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram. PMID:32560350
Lactobacillus acidophilus Membrane Vesicles as a Vehicle of Bacteriocin Delivery. PMID:32425905
Evaluation of antibacterial properties of lactic acid bacteria from traditionally and industrially produced fermented sausages from Germany. PMID:32160253
ADAPTABLE: a comprehensive web platform of antimicrobial peptides tailored to the user's research. PMID:31740563
PARAGEN 1.0: A Standardized Synthetic Gene Library for Fast Cell-Free Bacteriocin Synthesis. PMID:31552239
Bacterial Proteinaceous Compounds With Multiple Activities Toward Cancers and Microbial Infection. PMID:31447795
Bacteriocin Occurrence and Activity in Escherichia coli Isolated from Bovines and Wastewater. PMID:31443193
DRAMP 2.0, an updated data repository of antimicrobial peptides. PMID:31409791
FeptideDB: A web application for new bioactive peptides from food protein. PMID:31372542
Controlled release of nisin from Neusilin particles to enhance food safety of sour curd cheese. PMID:30956342
Heterologous Machine Learning for the Identification of Antimicrobial Activity in Human-Targeted Drugs. PMID:30935109
Microcin PDI Inhibits Antibiotic-Resistant Strains of Escherichia coli and Shigella through a Mechanism of Membrane Disruption and Protection by Homotrimer Self-Immunity. PMID:30902857
Phenotypic and Genomic Properties of a Novel Deep-Lineage Haloalkaliphilic Member of the Phylum Balneolaeota From Soda Lakes Possessing Na+-Translocating Proteorhodopsin. PMID:30483225
Identifying antimicrobial peptides using word embedding with deep recurrent neural networks. PMID:30418485
dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data. PMID:30380085
Engineered E. coli Nissle 1917 for the reduction of vancomycin-resistant Enterococcus in the intestinal tract. PMID:30377660
Circular and Leaderless Bacteriocins: Biosynthesis, Mode of Action, Applications, and Prospects. PMID:30233551
Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. PMID:30210481
Lactic Acid Bacteria in Finfish-An Update. PMID:30147679
Comparative Genomics and Description of Putative Virulence Factors of Melissococcus plutonius, the Causative Agent of European Foulbrood Disease in Honey Bees. PMID:30127293
The Genus Enterococcus: Between Probiotic Potential and Safety Concerns-An Update. PMID:30123208
BLAST-XYPlot Viewer: A Tool for Performing BLAST in Whole-Genome Sequenced Bacteria/Archaea and Visualize Whole Results Simultaneously. PMID:29789313
BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins. PMID:29788290
SpirPep: an in silico digestion-based platform to assist bioactive peptides discovery from a genome-wide database. PMID:29678128
Gut microbiota as a source of novel antimicrobials. PMID:29584555
Complete genome sequence of Lactobacillus pentosus SLC13, isolated from mustard pickles, a potential probiotic strain with antimicrobial activity against foodborne pathogenic microorganisms. PMID:29375672
Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat. PMID:29216827
Draft Genome Sequence of Staphylococcus aureus 4185, a Strain That Produces Aureocyclicin 4185. PMID:29097478
The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production. PMID:29062930
A novel bacteriocin from Enterococcus faecalis 478 exhibits a potent activity against vancomycin-resistant enterococci. PMID:29023515
Microbial abundance on the eggs of a passerine bird and related fitness consequences between urban and rural habitats. PMID:28953940
Current Status and Future Prospects of Marine Natural Products (MNPs) as Antimicrobials. PMID:28846659
In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases. PMID:28837656
RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links. PMID:28499008
Antimicrobial potential of bacteriocins in poultry and swine production. PMID:28399941
The sil Locus in Streptococcus Anginosus Group: Interspecies Competition and a Hotspot of Genetic Diversity. PMID:28119678
Bacteriocins: Not Only Antibacterial Agents. PMID:27481236
DRAMP: a comprehensive data repository of antimicrobial peptides. PMID:27075512
Genomic Features and Niche-Adaptation of Enterococcus faecium Strains from Korean Soybean-Fermented Foods. PMID:27070419
Draft Genome Sequence of Enterococcus faecium Strain 58m, Isolated from Intestinal Tract Content of a Woolly Mammoth, Mammuthus primigenius. PMID:26868396
Stability and Inhibitory Activity of Pediocin PA-1 Against Listeria sp. in Simulated Physiological Conditions of the Human Terminal Ileum. PMID:26782185
SATPdb: a database of structurally annotated therapeutic peptides. PMID:26527728
CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides. PMID:26467475
Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. PMID:26215050
Anti-proliferative effect on a colon adenocarcinoma cell line exerted by a membrane disrupting antimicrobial peptide KL15. PMID:26147829
A large-scale structural classification of antimicrobial peptides. PMID:26000295
Common occurrence of antibacterial agents in human intestinal microbiota. PMID:25999943
Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in anaerobic bacteria. PMID:25407095
A non-pediocin low molecular weight antimicrobial peptide produced by Pediococcus pentosaceus strain IE-3 shows increased activity under reducing environment. PMID:25158757
Emerging strategies and integrated systems microbiology technologies for biodiscovery of marine bioactive compounds. PMID:24918453
Draft Genome Sequence of the Nonstarter Bacteriocin-Producing Strain Enterococcus mundtii CRL35. PMID:24855298
Probiotics and antimicrobial peptides: the creatures' and substances' future in the twenty-first century: an opinion letter. PMID:24832155
Prediction of linear cationic antimicrobial peptides based on characteristics responsible for their interaction with the membranes. PMID:24730612
Antimicrobial peptides in the centipede Scolopendra subspinipes mutilans. PMID:24652097
Database-Guided Discovery of Potent Peptides to Combat HIV-1 or Superbugs. PMID:24276259
CAMP: Collection of sequences and structures of antimicrobial peptides. PMID:24265220
LAMP: A Database Linking Antimicrobial Peptides. PMID:23825543
BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides. PMID:23677608
Class IIa bacteriocins: diversity and new developments. PMID:23222636
Anti-infective properties of bacteriocins: an update. PMID:23109101
EnzyBase: a novel database for enzybiotic studies. PMID:22489867
Identification, purification and characterization of laterosporulin, a novel bacteriocin produced by Brevibacillus sp. strain GI-9. PMID:22403615
Transcription analysis of a lantibiotic gene cluster from Bifidobacterium longum DJO10A. PMID:21742926
Prediction of antimicrobial peptides based on sequence alignment and feature selection methods. PMID:21533231
In silico analysis highlights the frequency and diversity of type 1 lantibiotic gene clusters in genome sequenced bacteria. PMID:21118552
Complete genome sequence of Bifidobacterium longum subsp. longum BBMN68, a new strain from a healthy chinese centenarian. PMID:21097614
Peptide antibiotic sensing and detoxification modules of Bacillus subtilis. PMID:21078927 -
BACTIBASE: a new web-accessible database for bacteriocin characterization
PubMed citations: 54.
54 articles citing: BACTIBASE: a new web-accessible database for bacteriocin characterization
Emerging Computational Approaches for Antimicrobial Peptide Discovery. PMID:35884190
PR-1-Like Protein as a Potential Target for the Identification of Fusarium oxysporum: An In Silico Approach. PMID:35822818
Bacteriocin Producing Streptococcus agalactiae Strains Isolated from Bovine Mastitis in Brazil. PMID:35336163
Enterococcus spp. as a Producer and Target of Bacteriocins: A Double-Edged Sword in the Antimicrobial Resistance Crisis Context. PMID:34680796
Discovery, Optimization, and Clinical Application of Natural Antimicrobial Peptides. PMID:34680498
Unveiling Putative Functions of Mucus Proteins and Their Tryptic Peptides in Seven Gastropod Species Using Comparative Proteomics and Machine Learning-Based Bioinformatics Predictions. PMID:34200462
Bacteriocins from Lactic Acid Bacteria. A Powerful Alternative as Antimicrobials, Probiotics, and Immunomodulators in Veterinary Medicine. PMID:33915717
Identification of biomarkers for the accurate and sensitive diagnosis of three bacterial pneumonia pathogens using in silico approaches. PMID:33218302
Ocins database: a database of bug-busters from Bifidobacterium, Lactobacillus, and Enterococcus. PMID:32974523
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria. PMID:32029728
ADAPTABLE: a comprehensive web platform of antimicrobial peptides tailored to the user's research. PMID:31740563
Novel antimicrobial peptide discovery using machine learning and biophysical selection of minimal bacteriocin domains. PMID:31483516
Collection of antimicrobial peptides database and its derivatives: Applications and beyond. PMID:31441165
In silico Prediction and Exploration of Potential Bacteriocin Gene Clusters Within the Bacterial Genus Geobacillus. PMID:30298056
Optimal selection of molecular descriptors for antimicrobial peptides classification: an evolutionary feature weighting approach. PMID:30255784
Classes, Databases, and Prediction Methods of Pharmaceutically and Commercially Important Cystine-Stabilized Peptides. PMID:29921767
Synthesis, antimicrobial activity and conformational analysis of the class IIa bacteriocin pediocin PA-1 and analogs thereof. PMID:29899567
Recent Progress in the Chemical Synthesis of Class II and S-Glycosylated Bacteriocins. PMID:29875754
StraPep: a structure database of bioactive peptides. PMID:29688386
The rumen microbiome: an underexplored resource for novel antimicrobial discovery. PMID:29214045
The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production. PMID:29062930
In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases. PMID:28837656
Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era. PMID:28260651
Empirical comparison of web-based antimicrobial peptide prediction tools. PMID:28203715
The sil Locus in Streptococcus Anginosus Group: Interspecies Competition and a Hotspot of Genetic Diversity. PMID:28119678
Using bacterial genomes and essential genes for the development of new antibiotics. PMID:27940263
Identification of Multiple Bacteriocins in Enterococcus spp. Using an Enterococcus-Specific Bacteriocin PCR Array. PMID:27682075
Bacteriocins: Not Only Antibacterial Agents. PMID:27481236
Natural antimicrobial peptides as promising anti-HIV candidates. PMID:26834391
APD3: the antimicrobial peptide database as a tool for research and education. PMID:26602694
DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides. PMID:26578581
A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins. PMID:26558535
Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks. PMID:26497201
Common occurrence of antibacterial agents in human intestinal microbiota. PMID:25999943
Improved methods for classification, prediction, and design of antimicrobial peptides. PMID:25555720
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes. PMID:25377257
A non-pediocin low molecular weight antimicrobial peptide produced by Pediococcus pentosaceus strain IE-3 shows increased activity under reducing environment. PMID:25158757
New milk protein-derived peptides with potential antimicrobial activity: an approach based on bioinformatic studies. PMID:25141106
Prediction of linear cationic antimicrobial peptides based on characteristics responsible for their interaction with the membranes. PMID:24730612
C-PAmP: large scale analysis and database construction containing high scoring computationally predicted antimicrobial peptides for all the available plant species. PMID:24244550
Anti-infective properties of bacteriocins: an update. PMID:23109101
EnzyBase: a novel database for enzybiotic studies. PMID:22489867
Identification, purification and characterization of laterosporulin, a novel bacteriocin produced by Brevibacillus sp. strain GI-9. PMID:22403615
DAMPD: a manually curated antimicrobial peptide database. PMID:22110032
Prediction of antimicrobial peptides based on sequence alignment and feature selection methods. PMID:21533231
In silico analysis highlights the frequency and diversity of type 1 lantibiotic gene clusters in genome sequenced bacteria. PMID:21118552
A new structure-based classification of gram-positive bacteriocins. PMID:20676925
Bacteriocin as weapons in the marine animal-associated bacteria warfare: inventory and potential applications as an aquaculture probiotic. PMID:20479972
BACTIBASE second release: a database and tool platform for bacteriocin characterization. PMID:20105292
CAMP: a useful resource for research on antimicrobial peptides. PMID:19923233
Insights into structure-activity relationships in the C-terminal region of divercin V41, a class IIa bacteriocin with high-level antilisterial activity. PMID:19181835
APD2: the updated antimicrobial peptide database and its application in peptide design. PMID:18957441
SciDBMaker: new software for computer-aided design of specialized biological databases. PMID:18298861
The Molecular Biology Database Collection: 2008 update. PMID:18025043 - http://www.biomedcentral.com/1471-2180/7/89
Tags:
Tags
More detailed information about this field from each metasource.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
other molecular biology databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
drugs and drug design
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
bacterial antimicrobial peptides
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
eubacteria
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
microbiology
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
peptide sequence
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
physicochemistry
metasource: re3data.org
version: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: BACTIBASE; Bactibase: database dedicated to bacteriocins; DOI: https://doi.org/10.25504/FAIRsharing.5f5mfm; Last edited: April 26, 2021, 9:34 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
other molecular biology databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
drugs and drug design
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
bacterial antimicrobial peptides
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
eubacteria
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
microbiology
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
peptide sequence
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
physicochemistry
metasource: re3data.orgversion: re3data.org: BACTIBASE; editing status 2019-11-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30227 last accessed: 2022-11-04
protein protein sequence protein family molecular biology drug bacterial antimicrobial peptides eubacteria microbiology peptide sequence physicochemistry
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