NucleaRDB
Names
More detailed information about this field from each metasource.
NucleaRDB
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
nucleardb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
Names
More detailed information about this field from each metasource.
NucleaRDB
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
nucleardb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
Names
More detailed information about this field from each metasource.
NucleaRDB
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
nucleardb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
Families of nuclear hormone receptors
Description
More detailed information about this field from each metasource.
Families of nuclear hormone receptors
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Nuclear receptor superfamily
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
A molecular-class information system that collects, combines, validates and stores large amounts of data on Nuclear Hormone Receptors (NHRs). Contains data on sequences, ligand binding constants and mutations. In addition, many different types of computationally derived data are stored such as multiple sequence alignments and homology models.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
Webpage:
http://www.receptors.org/nucleardbWebpage
More detailed information about this field from each metasource.
http://www.receptors.org/nucleardb
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.receptors.org/nucleardb/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
http://www.receptors.org/NR/index.html
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems
PMID: 11125133
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NucleaRDB: information system for nuclear receptors
PMID: 22064856
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
Publications
More detailed information about this field from each metasource.
Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems
PMID: 11125133
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NucleaRDB: information system for nuclear receptors
PMID: 22064856
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
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Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems
PubMed citations: 43.
43 articles citing: Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems
SEVENS: a database for comprehensive GPCR genes obtained from genomes: -Update to 68 eukaryotes. PMID:29892516
SVM-Prot 2016: A Web-Server for Machine Learning Prediction of Protein Functional Families from Sequence Irrespective of Similarity. PMID:27525735
Accurate prediction of nuclear receptors with conjoint triad feature. PMID:26630876
GPCRdb: an information system for G protein-coupled receptors. PMID:26582914
NRfamPred: a proteome-scale two level method for prediction of nuclear receptor proteins and their sub-families. PMID:25351274
Drug target mining and analysis of the Chinese tree shrew for pharmacological testing. PMID:25105297
GPCRDB: an information system for G protein-coupled receptors. PMID:24304901
Top-down clustering for protein subfamily identification. PMID:23700359
iNR-PhysChem: a sequence-based predictor for identifying nuclear receptors and their subfamilies via physical-chemical property matrix. PMID:22363503
NucleaRDB: information system for nuclear receptors. PMID:22064856
Molecular mechanisms of disease for mutations at Gly-90 in rhodopsin. PMID:21940625
Chemical structural novelty: on-targets and off-targets. PMID:21916467
NR-2L: a two-level predictor for identifying nuclear receptor subfamilies based on sequence-derived features. PMID:21858146
Discovery-driven research and bioinformatics in nuclear receptor and coregulator signaling. PMID:21029773
PROFESS: a PROtein function, evolution, structure and sequence database. PMID:20624718
Searching for factors that distinguish disease-prone and disease-resistant prions via sequence analysis. PMID:19812771
Physical binding pocket induction for affinity prediction. PMID:19754201
Hmrbase: a database of hormones and their receptors. PMID:19589147
BAFF-R promotes cell proliferation and survival through interaction with IKKbeta and NF-kappaB/c-Rel in the nucleus of normal and neoplastic B-lymphoid cells. PMID:19258594
Adenosine induces growth-cone turning of sensory neurons. PMID:18777107
Gene characterization index: assessing the depth of gene annotation. PMID:18213364
Automated protein subfamily identification and classification. PMID:17708678
Mutation of phenylalanine-34 of parathyroid hormone disrupts NHERF1 regulation of PTH type I receptor signaling. PMID:17526947
Genome inventory and analysis of nuclear hormone receptors in Tetraodon nigroviridis. PMID:17426379
A mechanism for copper inhibition of infectious prion conversion. PMID:16698781
Biologically relevant effects of mRNA amplification on gene expression profiles. PMID:16608515
A general model of G protein-coupled receptor sequences and its application to detect remote homologs. PMID:16452613
pH sensing in the two-pore domain K+ channel, TASK2. PMID:16239344
GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors. PMID:15980444
Sphingosine 1-phosphate analogue recognition and selectivity at S1P4 within the endothelial differentiation gene family of receptors. PMID:15733055
Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases. PMID:15642112
GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors. PMID:15215416
Peroxisome proliferator-activated receptors target family landscape: a chemometrical approach to ligand selectivity based on protein binding site analysis. PMID:15072437
Prediction of the odorant binding site of olfactory receptor proteins by human-mouse comparisons. PMID:14691239
SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence. PMID:12824396
NRSAS: Nuclear Receptor Structure Analysis Servers. PMID:12824335
The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors. PMID:12574068
NRMD: Nuclear Receptor Mutation Database. PMID:12520016
GPCRDB information system for G protein-coupled receptors. PMID:12520006
Evidence for a direct interaction between the Thr11 residue of vasoactive intestinal polypeptide and Tyr184 located in the first extracellular loop of the VPAC2 receptor. PMID:12475394
Phosphorylation and intramolecular stabilization of the ligand binding domain in the nuclear receptor steroidogenic factor 1. PMID:12242296
Improved detection of homologous membrane proteins by inclusion of information from topology predictions. PMID:11847287
NUREBASE: database of nuclear hormone receptors. PMID:11752338 -
NucleaRDB: information system for nuclear receptors
PubMed citations: 6.
6 articles citing: NucleaRDB: information system for nuclear receptors
ONRLDB--manually curated database of experimentally validated ligands for orphan nuclear receptors: insights into new drug discovery. PMID:26637529
Accurate prediction of nuclear receptors with conjoint triad feature. PMID:26630876
Nuclear Receptor Signaling Atlas: Opening Access to the Biology of Nuclear Receptor Signaling Pathways. PMID:26325041
Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data. PMID:23826350
SARConnect: A Tool to Interrogate the Connectivity Between Proteins, Chemical Structures and Activity Data. PMID:23308082
NURBS: a database of experimental and predicted nuclear receptor binding sites of mouse. PMID:23196988
Tags:
Tags
More detailed information about this field from each metasource.
ligand binding domain binding
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
multiple sequence alignment
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
mutation analysis
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nuclear receptor
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequence annotation
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genetic variation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
molecular modelling
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
chemistry
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
Tags
More detailed information about this field from each metasource.
ligand binding domain binding
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
multiple sequence alignment
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
mutation analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nuclear receptor
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequence annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: NucleaRDB; NucleaRDB; DOI: https://doi.org/10.25504/FAIRsharing.8ecbxx; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genetic variation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
molecular modelling
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
chemistry
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
ligand binding domain binding multiple sequence alignment mutation analysis nuclear receptor sequence annotation structure polypeptide region protein sequence protein family genetic variation molecular interactions, pathways and networks molecular modelling chemistry
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