Tag: imaging

Found 49 sources
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Autism Brain Imaging Data Exchange

Autism Brain Imaging Data Exchange (ABIDE) initiative has aggregated functional and structural brain imaging data collected from laboratories around the world to accelerate our understanding of the neural bases of autism (ASD Autism Spectrum Disorder ...

The Cancer Imaging Archive

The Cancer Imaging Archive (TCIA) is a service which de-identifies and hosts medical images of cancer for public download. The data are organized as “collections”; typically patients’ imaging related by a common disease (e.g. lung cancer), image moda ...

Open Microscopy Environment eXtensible Markup Language

OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data. It is a joint project between universities, research establishments, industry and the software development community. The purp ...


The OpenNeuro project (formerly known as the OpenfMRI project) was established in 2010 to provide a resource for researchers interested in making their neuroimaging data openly available to the research community. It is managed by Russ Poldrack and C ...

Giga Science Database

GigaDB primarily serves as a repository to host data and tools associated with articles in GigaScience; however, it also includes a subset of datasets that are not associated with GigaScience articles. GigaDB defines a dataset as a group of files (e. ...

Cell Image Library

This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The purpose of this database is to advance research on cellular ...

Phenomics of yeast Mutants

PhenoM (Phenomics of yeast Mutants) stores, retrieves, visualises and data mines the quantitative single-cell measurements extracted from micrographs of temperature-sensitive mutant cells. PhenoM allows users to rapidly search and retrieve raw images ...

e-Mouse Atlas of Gene Expression

EMAGE is a database of in situ gene expression data in the mouse embryo. mRNA in situ hybridisation, protein immunohistochemistry, in situ transgenic reporter data, and in situ enhancer data is included. These are sourced from the community and curat ...

Structural Biology Data Grid

This resource provides open access to the host laboratory as well as the inhouse collections of X-ray diffraction, MicroED, and LLSM datasets.

Allen Brain Atlas

Gene expression and neuroanatomical data.


FlyCircuit is a public database for online archiving, cell type inventory, browsing, searching, analysis and 3D visualization of individual neurons in the Drosophila brain. The FlyCircuit Database currently contains about 30,000 high resolution 3D br ...

Coherent X-ray Imaging Data Bank

The Coherent X-ray Imaging Data Bank (CXIDB) offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. It arose from the need to share the terabytes of data generated from X-ray free- ...

The Neuroscience Lexicon

NeuroLex builds upon BIRNLex (Biomedical Informatics Research Network Project Lexicon) and is built from the core ontology, NIFSTD, in a modular fashion, with separate modules covering major domains of neuroscience: anatomy, cell, subcellular, molecu ...

imaging mz Markup Language

The purpose of imzML is to facilitate the exchange and processing of mass spectrometry imaging data. This website is intended to provide all information neccesary to implement imzML. imzML was developed in the framework of the EU funded project COMPU ...

Electron Microscope Public Image Archive

EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure. The purpose of EMPIAR is to provide easy access to s ...


FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them ...

Cognitive Paradigm Ontology

This ontology is used to describe the experimental conditions within cognitive/behavioral experiments, primarily in humans. CogPO is a framework for the formal representation of the cognitive paradigms used in behavioral experiments, driven by cognit ...


EMDataBank.org is a resource for deposition and retrieval of cryoEM maps, models and associated metadata. The resource unifies public access to the two major archives containing EM-based structural data: EM Data Bank (EMDB) and Protein Data Bank (PDB ...

Database of Aligned Ribosomal Complexes

The Database for Aligned Ribosomal Complexes (DARC) site provides a resource for directly comparing the structures of available ribosomal complexes.

Parkinson's Progression Markers Initiative

PPMI is an observational clinical study to verify progression markers in Parkinson’s disease. The study is designed to establish a comprehensive set of clinical, imaging and biosample data that will be used to define biomarkers of PD progression. Onc ...

UCSC Cancer Genomics Browser

The UCSC Cancer Genomics Browser is a web-based tool to integrate, visualize and analyze cancer genomics and clinical data. The browser displays whole-genome views of experimental measurements for multiple samples, alongside their associated clinical ...


RNAiDB provides access to results from RNAi interference studies in C. elegans , including images, movies, phenotypes, and graphical maps.

Digital Imaging and COmmunications in Medicine

DICOM — Digital Imaging and Communications in Medicine — is the international standard for medical images and related information (ISO 12052). It defines the formats for medical images that can be exchanged with the data and quality necessary for cli ...

LONI Image Data Archive

The LONI Image Data Archive (IDA) is a user-friendly environment for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. The IDA is utilized for dozens of neuroimaging research projects across North Ameri ...

Federal Interagency Traumatic Brain Injury Research (FITBIR) Informatics System

The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system is an extensible, scalable informatics platform for TBI relevant imaging, assessment, genomics, and other data types. It was developed to share data across the entire ...

The Pain and Interoception Imaging Network

The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scans (MRI, fMRI and DTI) hosted at UCLA and open to all pain investigators.

Neural ElectroMagnetic Ontologies

Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis ...

Deciphering the Mechanisms of Developmental Disorders

Initiated in 2013, DMDD has the ambitious goal of identifying all embryonic lethal knockout lines made at the Wellcome Trust Sanger institute, through their work as a major centre for creation of individual mouse gene knockouts. DMDD uses a combinati ...

Dynamic Proteomics

The Dynamic Proteomics database is a compendium of endogenously YFP-tagged human proteins and their time-lapse microscopy movies. These movies show the protein dynamics in space and in time in individual living human cancer cells in response to an an ...


Community-editable fluorescent protein database, cataloging an expanded range of proteins and parameters, including a new spectra viewer.

Neuroimaging Data Model

The Neuroimaging Data Model (NIDM) is a collection of specification documents and examples that outline a domain specific extension to the W3C Provenance Data Model (PROV-DM) for the exchange and sharing of human brain imaging data. The goal of the d ...


GELBANK is a publicly available database of two-dimensional gel electrophoresis (2DE) gel images of proteomes from organisms with known genome information (available at http://gelbank.anl.gov). GELBANK serves as a database for those proteomics labs t ...


Conformational features of DNA

Educational and Research Picture Archiving and Communication System

The core of the system is tailored PACS (Picture Archiving and Communication System). It forms the basis for educational and research applications such as the development of databases of case studies describing the treatment of real patients. Images ...


LiceBase is a database for sea lice genomics. LiceBase provides the genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, Blast functionality and access to related high-thoughput genomics data.


Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is applied to most structures present in the electron ...


A unified gene expression atlas for the model plant Physcomitrella patens. PEATmoss is an interactive tool to visualize gene expression data. These help pages explain several ways to query the expression data and to visualize the results, enabling t ...

LifeWatchGreece MicroCT vLab

A web based virtual gallery of biological specimens using X-ray microtomography. Micro-computed tomography or microCT is a method of non-destructive 3D x-ray microscopy, which allows the users to create 3D models of objects from a series of x-ray pro ...


A myocardial infarction risk knowledge base. Myocardial Infarction Risk Knowledge Base. MIRKB (the Myocardial Infarction Risk Knowledge Base) is a database that collected single factors, combined factors, and risk models which are article-supported ...

Biological Imaging methods Ontology

A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.


MorphoSource is a digital repository where researchers, museum curators, and the general public can find, download, and upload 3D media representing physical objects, most commonly biological specimens. If you are a researcher, you can use MorphoSour ...

Semantic Sensor Network Ontology

The Semantic Sensor Network (SSN) ontology is an ontology for describing sensors and their observations, the involved procedures, the studied features of interest, the samples used to do so, and the observed properties, as well as actuators. SSN foll ...

The CXI File Format for Coherent X-ray Imaging

The CXI file format was created as common format for all the data in the Coherent X-ray Imaging Data Bank (CXIDB). Naturally its scope is all experimental data collected during Coherent X-ray Imaging experiments as well as all data generated during th ...

Advanced Spaceborne Thermal Emission and Reflection Radiometer

ASTER Data is generated as a result of the collaboration between US and Japan space program where thermal and sensing imaging technology used to create detailed maps of land surface temperature, reflectance, and elevation. Scientist can freely use th ...


Brainbase is a data management, collaboration and sharing platform for the human neuroscience community. The platform provides private research collaboration workspaces, tools to flexibly organize and track subjects and sessions within studies, valid ...

BISE Bioimage Informatics Search Engine

BIII Bio Image informatics Index (www.biii.eu) also called BISE is a knowledge database of software tools, image databases for benchmarking and training materials for bio image analysis. Software tools are organized as full protocol of analysis (wo ...


STL files describe only the surface geometry of a three-dimensional object without any representation of color, texture or other common CAD model attributes. The STL format specifies both ASCII and binary representations.


An open-access clinical epidemiology database resource encouraging online exploration of complex studies. The concept of open data has been gaining traction as a mechanism to increase data use, ensure that data are preserved over time, and accelerat ...

Minimum Information About Particle Tracking Experiments

The proposed Minimum Information About Particle Tracking Experiments (MIAPTE) reporting guidelines described here aims to deliver a set of rules representing the minimal information required to report and support interpretation and assessment of data ...

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