Giga Science Database
Names
More detailed information about this field from each metasource.
Giga Science Database
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
GigaDB
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
GigaScience Database
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Giga Science Database
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
GigaDB
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
GigaScience Database
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
Other names: GigaDB, GigaScience Database
Names
More detailed information about this field from each metasource.
Giga Science Database
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
GigaDB
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
GigaScience Database
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
GigaDB primarily serves as a repository to host data and tools associated with articles in GigaScience; however, it also includes a subset of datasets that are not associated with GigaScience articles. GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support an article or study.
Description
More detailed information about this field from each metasource.
GigaDB primarily serves as a repository to host data and tools associated with articles in GigaScience; however, it also includes a subset of datasets that are not associated with GigaScience articles. GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support an article or study.
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
GigaDB primarily serves as a repository to host data and tools associated with articles in the online, open-access journal GigaScience; however, it also includes a subset of datasets that are not associated with GigaScience articles. GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support an article or study. Through our association with DataCite, each dataset in GigaDB will be assigned a DOI that can be used as a standard citation for future use of these data in other articles by the authors and other researchers. Datasets in GigaDB all require a title that is specific to the dataset, an author list, and an abstract that provides information specific to the data included within the set. Datasets that are not affiliated with a GigaScience article are approved for inclusion by the Editors of GigaScience. The majority of such datasets are from projects at the BGI, given their sponsorship of GigaDB. Many of these datasets may not have another discipline-specific repository suitably able to host them or have been rapidly released prior to any publications for use by the research community, whilst enabling their producers to obtain credit through data citation. The GigaScience Editors may also consider the inclusion of particularly interesting, previously unpublished datasets in GigaDB, especially if they meet our criteria and inclusion as Data Note articles in the journal (see our author instructions here).
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
GigaDB primarily serves as a repository to host data and tools associated with articles published by GigaScience Press; GigaScience and GigaByte (both are online, open-access journals). GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support a unit-of-work (article or study). GigaDB allows the integration of manuscript publication with supporting data and tools.
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
Webpage:
http://gigadb.org/Webpage
More detailed information about this field from each metasource.
http://gigadb.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
http://gigadb.org/site/index
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: GigaDB Terms of UseLicence name
More detailed information about this field from each metasource.
GigaDB Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Public Domain
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
Licence URL
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http://gigadb.org/site/term
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
GigaDB: announcing the GigaScience database
PMID: 23587345
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
GigaDB: announcing the GigaScience database
PMID: 23587345
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
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GigaDB: announcing the GigaScience database
PubMed citations: 31.
31 articles citing: GigaDB: announcing the GigaScience database
Identification and Comprehensive Ggenome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation. PMID:35903236
A Decade of GigaScience: GigaDB and the Open Data Movement. PMID:35701374
Genome-Wide Identification and Expression Analysis of the R2R3-MYB Transcription Factor Family Revealed Their Potential Roles in the Flowering Process in Longan (Dimocarpus longan). PMID:35401601
MYB transcription factor family in sweet cherry (Prunus avium L.): genome-wide investigation, evolution, structure, characterization and expression patterns. PMID:34979911
Whole-Genome Sequencing of Acer catalpifolium Reveals Evolutionary History of Endangered Species. PMID:34878129
Genome-Wide Identification and Analysis of the MADS-Box Gene Family in American Beautyberry (Callicarpa americana). PMID:34579338
Knowledge and Attitudes Among Life Scientists Toward Reproducibility Within Journal Articles: A Research Survey. PMID:34268467
UnityMol prototype for FAIR sharing of molecular-visualization experiences: from pictures in the cloud to collaborative virtual reality exploration in immersive 3D environments. PMID:34076589
The Rhododendron Plant Genome Database (RPGD): a comprehensive online omics database for Rhododendron. PMID:34022814
Portal of Juglandaceae: A comprehensive platform for Juglandaceae study. PMID:32194971
Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. PMID:31701028
The First Highly Contiguous Genome Assembly of Pikeperch (Sander lucioperca), an Emerging Aquaculture Species in Europe. PMID:31540274
Evolution of the modular, disordered stress proteins known as dehydrins. PMID:30726271
Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. PMID:30626928
Advances in genomic hepatocellular carcinoma research. PMID:30521023
Endangered Père David's deer genome provides insights into population recovering. PMID:30459847
Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes. PMID:30290830
Sharing and reusing cell image data. PMID:29851565
Population size may shape the accumulation of functional mutations following domestication. PMID:29351740
The Ontology for Biomedical Investigations. PMID:27128319
Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology. PMID:25671094
Big heart data: advancing health informatics through data sharing in cardiovascular imaging. PMID:25415993
diArk--the database for eukaryotic genome and transcriptome assemblies in 2014. PMID:25378341
Structuring research methods and data with the research object model: genomics workflows as a case study. PMID:25276335
Big data and biomedical informatics: a challenging opportunity. PMID:24853034
Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data. PMID:24723752
GigaDB: promoting data dissemination and reproducibility. PMID:24622612
Ten simple rules for reproducible computational research. PMID:24204232
Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data. PMID:23800020
Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research. PMID:23759993
Large and linked in scientific publishing. PMID:23587310
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gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
imaging
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
software
metasource: Fairsharing.org
version: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general genomics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
ct data
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
fair
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
mri image data
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biocuration
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biodiversity
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biology
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biomedical sciences
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biomedicine
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
data publishing
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
human genetics
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
microscopy data
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
optical imaging
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
transcriptome sequence
metasource: re3data.org
version: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
software
metasource: Fairsharing.orgversion: FAIRsharing.org: GigaDB; Giga Science Database; DOI: https://doi.org/10.25504/FAIRsharing.rcbwsf; Last edited: Jan. 21, 2021, 1:49 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general genomics databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ct data
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
fair
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
mri image data
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biocuration
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biodiversity
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biology
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biomedical sciences
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
biomedicine
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
data publishing
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
human genetics
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
microscopy data
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
optical imaging
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
transcriptome sequence
metasource: re3data.orgversion: re3data.org: GigaDB; editing status 2021-07-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TG83 last accessed: 2022-11-04
gene expression imaging sequencing software genomics general genomics ct data mri image data biocuration biodiversity biomedical sciences biomedicine data publishing genomics human genetics microscopy data optical imaging transcriptome sequence
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