Electron Microscope Public Image Archive
Names
More detailed information about this field from each metasource.
Electron Microscope Public Image Archive
metasource: Fairsharing.org
version: None
EMPIAR
metasource: Fairsharing.org
version: None
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Electron Microscopy Public Image Archive
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
EMDB Public Image Archive
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Electron Microscopy Data Bank Public Image Archive
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
formerly: Electron Microscopy Pilot Image ARchive
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Electron Microscope Public Image Archive
metasource: Fairsharing.orgversion: None
EMPIAR
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Electron Microscopy Public Image Archive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
EMDB Public Image Archive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Electron Microscopy Data Bank Public Image Archive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
formerly: Electron Microscopy Pilot Image ARchive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Other names: EMPIAR, Electron Microscopy Public Image Archive, EMDB Public Image Archive, Electron Microscopy Data Bank Public Image Archive, formerly: Electron Microscopy Pilot Image ARchive
Names
More detailed information about this field from each metasource.
Electron Microscope Public Image Archive
metasource: Fairsharing.orgversion: None
EMPIAR
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Electron Microscopy Public Image Archive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
EMDB Public Image Archive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Electron Microscopy Data Bank Public Image Archive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
formerly: Electron Microscopy Pilot Image ARchive
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure. The purpose of EMPIAR is to provide easy access to state-of-the-art raw data to facilitate methods development and validation, which will lead to better 3D structures. It complements the Electron Microscopy Data Bank (EMDB), where 3D volumes are stored.
Description
More detailed information about this field from each metasource.
EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure. The purpose of EMPIAR is to provide easy access to state-of-the-art raw data to facilitate methods development and validation, which will lead to better 3D structures. It complements the Electron Microscopy Data Bank (EMDB), where 3D volumes are stored.
metasource: Fairsharing.orgversion: None
EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload, download and reprocess the thousands of raw, 2D images used to build a 3D structure. The purpose of EMPIAR is to provide an easy access to the state-of-the-art raw data to facilitate methods development and validation, which will lead to better 3D structures. It complements the Electron Microscopy Data Bank (EMDB), where 3D images are stored, and uses the fault-tolerant Aspera platform for data transfers
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Webpage:
https://www.ebi.ac.uk/pdbe/emdb/empiar/Webpage
More detailed information about this field from each metasource.
https://www.ebi.ac.uk/pdbe/emdb/empiar/
metasource: Fairsharing.orgversion: None
https://www.ebi.ac.uk/empiar/
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Licence:
Name: EMBL-EBI Terms of UseLicence name
More detailed information about this field from each metasource.
EMBL-EBI Terms of Use
metasource: Fairsharing.orgversion: None
Public Domain
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://www.ebi.ac.uk/about/terms-of-use
metasource: Fairsharing.orgversion: None
http://www.ebi.ac.uk/pdbe/emdb/empiar/about
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
EMPIAR: a public archive for raw electron microscopy image data
PMID: 27067018
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
EMPIAR: a public archive for raw electron microscopy image data
PMID: 27067018
metasource: Fairsharing.org
version: None
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EMPIAR: a public archive for raw electron microscopy image data
PubMed citations: 112.
112 articles citing: EMPIAR: a public archive for raw electron microscopy image data
In situ architecture of the lipid transport protein VPS13C at ER-lysosome membrane contacts. PMID:35858323
Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy. PMID:35715545
Data Mining, Quality and Management in the Life Sciences. PMID:35507257
Validation analysis of EMDB entries. PMID:35503203
Search and sequence analysis tools services from EMBL-EBI in 2022. PMID:35412617
The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage. PMID:35405434
User-Accessible Machine Learning Approaches for Cell Segmentation and Analysis in Tissue. PMID:35360226
Cryogenic electron microscopy approaches that combine images and tilt series. PMID:35275182
How advances in cryo-electron tomography have contributed to our current view of bacterial cell biology. PMID:35252838
White matter integrity in mice requires continuous myelin synthesis at the inner tongue. PMID:35246535
Centering Noisy Images with Application to Cryo-EM. PMID:35126803
Nanofluidic chips for cryo-EM structure determination from picoliter sample volumes. PMID:35060902
New system for archiving integrative structures. PMID:34866606
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. PMID:34862503
Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model. PMID:34862501
The European Bioinformatics Institute (EMBL-EBI) in 2021. PMID:34850134
New tools for automated cryo-EM single-particle analysis in RELION-4.0. PMID:34783343
The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns. PMID:34745019
Electron cryo-tomography reveals the subcellular architecture of growing axons in human brain organoids. PMID:34698018
Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data. PMID:34664328
Deep learning-based mixed-dimensional Gaussian mixture model for characterizing variability in cryo-EM. PMID:34326541
A Bayesian approach to extracting free-energy profiles from cryo-electron microscopy experiments. PMID:34211017
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. PMID:34048576
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology. PMID:34021280
Making the invisible enemy visible. PMID:33972785
Rapid response to emerging biomedical challenges and threats. PMID:33953926
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods. PMID:33950394
The Protein Data Bank Archive. PMID:33950382
Detecting Protein Communities in Native Cell Extracts by Machine Learning: A Structural Biologist's Perspective. PMID:33937337
Below 3 Å structure of apoferritin using a multipurpose TEM with a side entry cryoholder. PMID:33863933
CEM500K, a large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning. PMID:33830015
Using RELION software within the Scipion framework. PMID:33825701
Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB. PMID:33744287
Analysing the yeast complexome-the Complex Portal rising to the challenge. PMID:33677561
Local computational methods to improve the interpretability and analysis of cryo-EM maps. PMID:33623015
CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks. PMID:33542510
Data-driven challenges and opportunities in crystallography. PMID:33523208
Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination. PMID:33520243
A data reduction and compression description for high throughput time-resolved electron microscopy. PMID:33510168
Data-deposition protocols for correlative soft X-ray tomography and super-resolution structured illumination microscopy applications. PMID:33490973
Multi-body Refinement of Cryo-EM Images in RELION. PMID:33368003
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. PMID:33348379
Pancreatlas: Applying an Adaptable Framework to Map the Human Pancreas in Health and Disease. PMID:33294866
TranSPHIRE: automated and feedback-optimized on-the-fly processing for cryo-EM. PMID:33177513
Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures. PMID:33063791
Topaz-Denoise: general deep denoising models for cryoEM and cryoET. PMID:33060581
Structure of the bacterial ribosome at 2 Å resolution. PMID:32924932
Present and Emerging Methodologies in Cryo-EM Single-Particle Analysis. PMID:32919493
Improvement of cryo-EM maps by density modification. PMID:32807957
Validation tests for cryo-EM maps using an independent particle set. PMID:32743544
Computational Tools for Serial Block Electron Microscopy Reveal Plasmodesmata Distributions and Wall Environments. PMID:32719057
The data universe of structural biology. PMID:32695409
Continuous flexibility analysis of SARS-CoV-2 Spike prefusion structures. PMID:32676604
Cryo-EM structure of arabinosyltransferase EmbB from Mycobacterium smegmatis. PMID:32636380
Three-dimensional ultrastructure of Plasmodium falciparum throughout cytokinesis. PMID:32511279
High-resolution cryo-EM reconstructions in the presence of substantial aberrations. PMID:32431828
Development of basic building blocks for cryo-EM: the emcore and emvis software libraries. PMID:32254059
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1. PMID:32148853
What Will Computational Modeling Approaches Have to Say in the Era of Atomistic Cryo-EM Data? PMID:32090567
Amyloid structure determination in RELION-3.1. PMID:32038040
Evolving data standards for cryo-EM structures. PMID:32002441
Machine learning and big scientific data. PMID:31955675
Investigating eukaryotic cells with cryo-ET. PMID:31935172
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. PMID:31780431
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. PMID:31701143
PDBe: improved findability of macromolecular structure data in the PDB. PMID:31691821
Real-time cryo-electron microscopy data preprocessing with Warp. PMID:31591575
Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly. PMID:31582853
Bringing Open Data to Whole Slide Imaging. PMID:31579322
Asymmetric analysis reveals novel virus capsid features. PMID:31342264
A collection of yeast cellular electron cryotomography data. PMID:31247098
Feature Decomposition Based Saliency Detection in Electron Cryo-Tomograms. PMID:31205800
Securing the future of research computing in the biosciences. PMID:31095554
Biomedical Image Processing with Containers and Deep Learning: An Automated Analysis Pipeline: Data architecture, artificial intelligence, automated processing, containerization, and clusters orchestration ease the transition from data acquisition to insights in medium-to-large datasets. PMID:31094000
ETDB-Caltech: A blockchain-based distributed public database for electron tomography. PMID:30986271
MBIR: A cryo-ET 3D reconstruction method that effectively minimizes missing wedge artifacts and restores missing information. PMID:30872095
The 2018 correlative microscopy techniques roadmap. PMID:30799880
PIXER: an automated particle-selection method based on segmentation using a deep neural network. PMID:30658571
Single-particle reconstruction statistics: a diagnostic tool in solving biomolecular structures by cryo-EM. PMID:30605123
Three-Dimensional Nanostructure of an Intact Microglia Cell. PMID:30568579
Electron cryotomography analysis of Dam1C/DASH at the kinetochore-spindle interface in situ. PMID:30504246
A Multi-model Approach to Assessing Local and Global Cryo-EM Map Quality. PMID:30449687
Deep Consensus, a deep learning-based approach for particle pruning in cryo-electron microscopy. PMID:30443369
New tools for automated high-resolution cryo-EM structure determination in RELION-3. PMID:30412051
A call for public archives for biological image data. PMID:30377375
Protein Data Bank: the single global archive for 3D macromolecular structure data. PMID:30357364
Comparing cryo-EM structures. PMID:30321594
Searching for 3D structural models from a library of biological shapes using a few 2D experimental images. PMID:30208849
APPLE picker: Automatic particle picking, a low-effort cryo-EM framework. PMID:30134153
The in situ structures of mono-, di-, and trinucleosomes in human heterochromatin. PMID:30091658
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION. PMID:29856314
Structural biology data archiving - where we are and what lies ahead. PMID:29749603
Correlative Microscopy of Vitreous Sections Provides Insights into BAR-Domain Organization In Situ. PMID:29681471
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. PMID:29657133
cisTEM, user-friendly software for single-particle image processing. PMID:29513216
Cryo-tomography tilt-series alignment with consideration of the beam-induced sample motion. PMID:29410148
Defocus and magnification dependent variation of TEM image astigmatism. PMID:29321616
Validation of Structures in the Protein Data Bank. PMID:29174494
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. PMID:29126160
Big data in cryoEM: automated collection, processing and accessibility of EM data. PMID:29100109
The Image Data Resource: A Bioimage Data Integration and Publication Platform. PMID:28775673
Building bridges between cellular and molecular structural biology. PMID:28682240
A pipeline approach to single-particle processing in RELION. PMID:28580911
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. PMID:28573592
Helical reconstruction in RELION. PMID:28193500
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2. PMID:27845625
Real-time detection and single-pass minimization of TEM objective lens astigmatism. PMID:27838367
Budding yeast chromatin is dispersed in a crowded nucleoplasm in vivo. PMID:27605704
Databases and Archiving for CryoEM. PMID:27572735
Adaptive multiresolution method for MAP reconstruction in electron tomography. PMID:27522477
The archiving and dissemination of biological structure data. PMID:27450113
3D correlative light and electron microscopy of cultured cells using serial blockface scanning electron microscopy. PMID:27445312
Tags:
Tags
More detailed information about this field from each metasource.
electron microscopy
metasource: Fairsharing.org
version: None
imaging
metasource: Fairsharing.org
version: None
microscopy
metasource: Fairsharing.org
version: None
protein image
metasource: Fairsharing.org
version: None
whole mount tissue
metasource: Fairsharing.org
version: None
2d crystallography
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
micrograph
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
particle
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
tilt-series
metasource: re3data.org
version: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
electron microscopy
metasource: Fairsharing.orgversion: None
imaging
metasource: Fairsharing.orgversion: None
microscopy
metasource: Fairsharing.orgversion: None
protein image
metasource: Fairsharing.orgversion: None
whole mount tissue
metasource: Fairsharing.orgversion: None
2d crystallography
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
micrograph
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
particle
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
tilt-series
metasource: re3data.orgversion: re3data.org: Electron Microscopy Public Image Archive; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R32Q0N last accessed: 2022-11-04
electron microscopy imaging microscopy protein image whole mount tissue 2d crystallography micrograph particle tilt-series
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