imaging mz Markup Language
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imaging mz Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
imzML
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
imaging mz Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
imzML
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
imaging mz Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
imzML
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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The purpose of imzML is to facilitate the exchange and processing of mass spectrometry imaging data. This website is intended to provide all information neccesary to implement imzML. imzML was developed in the framework of the EU funded project COMPUTIS. The main goals during the development were complete description of MS imaging experiments and efficient storage of (very large) data sets. imzML is it not limited to MS imaging, but is also useful for other MS applications generating large data sets such as LC-FTMS. The metadata part of imzML is based on the mzML format by HUPO-PSI.
Description
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The purpose of imzML is to facilitate the exchange and processing of mass spectrometry imaging data. This website is intended to provide all information neccesary to implement imzML. imzML was developed in the framework of the EU funded project COMPUTIS. The main goals during the development were complete description of MS imaging experiments and efficient storage of (very large) data sets. imzML is it not limited to MS imaging, but is also useful for other MS applications generating large data sets such as LC-FTMS. The metadata part of imzML is based on the mzML format by HUPO-PSI.
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
https://ms-imaging.org/wp/imzml/Webpage
More detailed information about this field from each metasource.
https://ms-imaging.org/wp/imzml/
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
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imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging
PMID: 21063949
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging
PMID: 21063949
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging
PubMed citations: 17.
17 articles citing: imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging
RNF43/ZNRF3 loss predisposes to hepatocellular-carcinoma by impairing liver regeneration and altering the liver lipid metabolic ground-state. PMID:35039505
Applications and continued evolution of glycan imaging mass spectrometry. PMID:34392557
Contrast optimization of mass spectrometry imaging (MSI) data visualization by threshold intensity quantization (TrIQ). PMID:34179452
Histo-molecular differentiation of renal cancer subtypes by mass spectrometry imaging and rapid proteome profiling of formalin-fixed paraffin-embedded tumor tissue sections. PMID:33216824
Automatic 3D Nonlinear Registration of Mass Spectrometry Imaging and Magnetic Resonance Imaging Data. PMID:30932478
Software solutions for evaluation and visualization of laser ablation inductively coupled plasma mass spectrometry imaging (LA-ICP-MSI) data: a short overview. PMID:30778692
Beyond the H&E: Advanced Technologies for in situ Tissue Biomarker Imaging. PMID:30462242
BASIS: High-performance bioinformatics platform for processing of large-scale mass spectrometry imaging data in chemically augmented histology. PMID:29511258
Lipid zonation and phospholipid remodeling in nonalcoholic fatty liver disease. PMID:27863448
Assessment of pathological response to therapy using lipid mass spectrometry imaging. PMID:27841360
The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5. PMID:27741559
The Need for Speed in Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry. PMID:27570788
Numerical compression schemes for proteomics mass spectrometry data. PMID:24677029
Mirion--a software package for automatic processing of mass spectrometric images. PMID:23761044
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. PMID:23429179
Probing neuropeptide signaling at the organ and cellular domains via imaging mass spectrometry. PMID:22465716
MALDI Imaging Mass Spectrometry (MALDI-IMS)-application of spatial proteomics for ovarian cancer classification and diagnosis. PMID:21340013
Tags:
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image
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
imaging
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
mass spectrometry assay
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
tissue
metasource: Fairsharing.org
version: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
image
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
mass spectrometry assay
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
tissue
metasource: Fairsharing.orgversion: FAIRsharing.org: imzML; imaging mz Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.v7ft18; Last edited: Jan. 8, 2019, 1:33 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
imaging mass spectrometry assay tissue
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