Open Microscopy Environment eXtensible Markup Language
Names
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Open Microscopy Environment eXtensible Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
OME-XML
metasource: Fairsharing.org
version: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Open Microscopy Environment eXtensible Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
OME-XML
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Open Microscopy Environment eXtensible Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
OME-XML
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data. It is a joint project between universities, research establishments, industry and the software development community. The purpose of OME-XML is to provide a rich, extensible way to save information concerning microscopy experiments and the images acquired therein. OME-XML as a file format is superseded by OME-TIFF, which is the preferred container format for image data making use of the OME Data Model.
Description
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OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data. It is a joint project between universities, research establishments, industry and the software development community. The purpose of OME-XML is to provide a rich, extensible way to save information concerning microscopy experiments and the images acquired therein. OME-XML as a file format is superseded by OME-TIFF, which is the preferred container format for image data making use of the OME Data Model.
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
https://docs.openmicroscopy.org/ome-model/6.2.2/ome-xml/index.htmlWebpage
More detailed information about this field from each metasource.
https://docs.openmicroscopy.org/ome-model/6.2.2/ome-xml/index.html
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence:
Name: Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported (CC BY-NC-SA 3.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported (CC BY-NC-SA 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence URL
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https://creativecommons.org/licenses/by-nc-sa/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Metadata matters: access to image data in the real world
PMID: 20513764
metasource: Fairsharing.org
version: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
PMID: 15892875
metasource: Fairsharing.org
version: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
Metadata matters: access to image data in the real world
PMID: 20513764
metasource: Fairsharing.org
version: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
PMID: 15892875
metasource: Fairsharing.org
version: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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Metadata matters: access to image data in the real world
PubMed citations: 310.
310 articles citing: Metadata matters: access to image data in the real world
Large scale, single-cell FRET-based glucose uptake measurements within heterogeneous populations. PMID:35313696
Real-Time Measurements of Intracellular cAMP Gradients Using FRET-Based cAMP Nanorulers. PMID:35286666
Histone H3 and H4 tails play an important role in nucleosome phase separation. PMID:35158124
A data management infrastructure for the integration of imaging and omics data in life sciences. PMID:35130839
High-Throughput Imaging of CRISPR- and Recombinant Adeno-Associated Virus-Induced DNA Damage Response in Human Hematopoietic Stem and Progenitor Cells. PMID:35049367
DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics. PMID:35041653
Floxed exon (Flexon): A flexibly positioned stop cassette for recombinase-mediated conditional gene expression. PMID:35027456
Vps13-like proteins provide phosphatidylethanolamine for GPI anchor synthesis in the ER. PMID:35015055
A Systematic, Open-Science Framework for Quantification of Cell-Types in Mouse Brain Sections Using Fluorescence Microscopy. PMID:34949993
Design and Construction of a Chamber Enabling the Observation of Living Cells in the Field of a Constant Magnetic Force. PMID:34943846
Mandipropamid as a chemical inducer of proximity for in vivo applications. PMID:34934192
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. PMID:34862503
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies. PMID:34845388
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging. PMID:34824477
Influenza A M2 recruits M1 to the plasma membrane: A fluorescence fluctuation microscopy study. PMID:34808098
The autophagy protein ATG9A enables lipid mobilization from lipid droplets. PMID:34799570
The first edentulous ceratosaur from South America. PMID:34795306
Precision Mapping of Amyloid-β Binding Reveals Perisynaptic Localization and Spatially Restricted Plasticity Deficits. PMID:34789478
Mammary collagen architecture and its association with mammographic density and lesion severity among women undergoing image-guided breast biopsy. PMID:34753492
QuickFigures: A toolkit and ImageJ PlugIn to quickly transform microscope images into scientific figures. PMID:34752463
Multi-window sparse spectral sampling stimulated Raman scattering microscopy. PMID:34745724
Real-time polarization microscopy of fibrillar collagen in histopathology. PMID:34561546
Subcellular proteomics. PMID:34549195
Metabolic Cost of the Immune Response During Early Ontogeny of the Scallop Argopecten purpuratus. PMID:34539443
Multicolor fluorescence fluctuation spectroscopy in living cells via spectral detection. PMID:34494547
Quantitative measurement of the histological features of alpha-1 antitrypsin deficiency-associated liver disease in biopsy specimens. PMID:34398915
The trans cell cycle effects of PARP inhibitors underlie their selectivity toward BRCA1/2-deficient cells. PMID:34385259
Turn-key mapping of cell receptor force orientation and magnitude using a commercial structured illumination microscope. PMID:34344862
High-throughput mapping of a whole rhesus monkey brain at micrometer resolution. PMID:34312500
Developing open-source software for bioimage analysis: opportunities and challenges. PMID:34249339
Dissecting Out the Molecular Mechanism of Insecticidal Activity of Ostreolysin A6/Pleurotolysin B Complexes on Western Corn Rootworm. PMID:34209983
Anatomic Distribution of Intravenously Injected IgG Takes Approximately 1 Week to Achieve Stratum Corneum Saturation in Vaginal Tissues. PMID:34162723
Apoptosis-inducing anti-HER2 agents operate through oligomerization-induced receptor immobilization. PMID:34155320
Deepometry, a framework for applying supervised and weakly supervised deep learning to imaging cytometry. PMID:34145434
Elevated dietary ω-6 polyunsaturated fatty acids induce reversible peripheral nerve dysfunction that exacerbates comorbid pain conditions. PMID:34140694
Bioimage analysis workflows: community resources to navigate through a complex ecosystem. PMID:34136134
Transfection and Activation of CofActor, a Light and Stress Gated Optogenetic Tool, in Primary Hippocampal Neuron Cultures. PMID:34124292
Dynamic Imaging of IEL-IEC Co-Cultures Allows for Quantification of CD103-Dependent T Cell Migration. PMID:34067987
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology. PMID:34021280
CalTrack: High-Throughput Automated Calcium Transient Analysis in Cardiomyocytes. PMID:34018815
Dynamics of Bacterial Signal Recognition Particle at a Single Molecule Level. PMID:33995327
PicPreview and PicSummary: Two Timesaving Plugins for the Fluorescence Microscopist. PMID:33917996
Transport of Alzheimer's associated amyloid-β catalyzed by P-glycoprotein. PMID:33901197
Protocol for analysis of integrin-mediated cell adhesion of lateral plate mesoderm cells isolated from zebrafish embryos. PMID:33870229
A Simple Method for Creating a High-Content Microscope for Imaging Multiplexed Tissue Microarrays. PMID:33822482
Imaging Mitochondrial Dynamics in the Xenopus Central Nervous System (CNS). PMID:33795462
Data science in cell imaging. PMID:33795377
Aptamer Detection of Mycobaterium tuberculosis Mannose-Capped Lipoarabinomannan in Lesion Tissues for Tuberculosis Diagnosis. PMID:33791241
Preclinical small molecule WEHI-7326 overcomes drug resistance and elicits response in patient-derived xenograft models of human treatment-refractory tumors. PMID:33712556
Effective image visualization for publications - a workflow using open access tools and concepts. PMID:33708381
Joint analysis of expression levels and histological images identifies genes associated with tissue morphology. PMID:33707455
Saul-Wilson Syndrome Missense Allele Does Not Show Obvious Golgi Defects in a C. elegans Model. PMID:33688625
DeepMIB: User-friendly and open-source software for training of deep learning network for biological image segmentation. PMID:33651804
Protein products of nonstop mRNA disrupt nucleolar homeostasis. PMID:33619693
BigDataProcessor2: A free and open-source Fiji plugin for inspection and processing of TB sized image data. PMID:33594413
Characterizing the Tumor Immune Microenvironment with Tyramide-Based Multiplex Immunofluorescence. PMID:33590360
Computational analyses reveal spatial relationships between nuclear pore complexes and specific lamins. PMID:33570570
Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain. PMID:33570495
Extracting meaningful circuit-based calcium dynamics in astrocytes and neurons from adult mouse brain slices using single-photon GCaMP imaging. PMID:33554141
Single-strand DNA breaks cause replisome disassembly. PMID:33484638
Quantification of Genetically Encoded Lipid Biosensors. PMID:33481231
Resources and challenges for integrative analysis of nuclear architecture data. PMID:33450522
Transcriptional regulation of alcohol induced liver fibrosis in a translational porcine hepatocellular carcinoma model. PMID:33444661
Quantitative collagen assessment in right ventricular myectomies from patients with tetralogy of Fallot. PMID:33404047
Quantitative image analysis of microbial communities with BiofilmQ. PMID:33398098
FLIMJ: An open-source ImageJ toolkit for fluorescence lifetime image data analysis. PMID:33378370
3D Quantification of Vascular-Like Structures in z Stack Confocal Images. PMID:33377074
Quantitative Imaging of MS2-Tagged hTR in Cajal Bodies: Photobleaching and Photoactivation. PMID:33377008
Pancreatlas: Applying an Adaptable Framework to Map the Human Pancreas in Health and Disease. PMID:33294866
3D projection electrophoresis for single-cell immunoblotting. PMID:33277486
Advances and opportunities in image analysis of bacterial cells and communities. PMID:33242074
Inflammasomes within Hyperactive Murine Dendritic Cells Stimulate Long-Lived T Cell-Mediated Anti-tumor Immunity. PMID:33207188
Hindbrain and Spinal Cord Contributions to the Cutaneous Sensory Innervation of the Larval Zebrafish Pectoral Fin. PMID:33192344
Unifying the mechanism of mitotic exit control in a spatiotemporal logical model. PMID:33180788
The ImageJ ecosystem: Open-source software for image visualization, processing, and analysis. PMID:33166005
ImageBox 2 - Efficient and Rapid Access of Image Tiles from Whole-Slide Images Using Serverless HTTP Range Requests. PMID:33163255
Motion magnification analysis of microscopy videos of biological cells. PMID:33151976
Bringing SEM and MSI Closer Than Ever Before: Visualizing Aspergillus and Pseudomonas Infection in the Rat Lungs. PMID:33143040
Social attraction in Drosophila is regulated by the mushroom body and serotonergic system. PMID:33093442
Loss of PRCD alters number and packaging density of rhodopsin in rod photoreceptor disc membranes. PMID:33087780
Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data. PMID:33076428
Integration of geoscience frameworks into digital pathology analysis permits quantification of microarchitectural relationships in histological landscapes. PMID:33067578
A MAC2-positive progenitor-like microglial population is resistant to CSF1R inhibition in adult mouse brain. PMID:33054973
LibMI: An Open Source Library for Efficient Histopathological Image Processing. PMID:33042605
Machine Learning Methods for Fluorescence Lifetime Imaging (FLIM) Based Label-Free Detection of Microglia. PMID:33013309
Heterogeneity in VEGF Receptor-2 Mobility and Organization on the Endothelial Cell Surface Leads to Diverse Models of Activation by VEGF. PMID:32997988
Whole-Brain Image Analysis and Anatomical Atlas 3D Generation Using MagellanMapper. PMID:32981139
Integration of the ImageJ Ecosystem in the KNIME Analytics Platform. PMID:32905440
The Human and Mouse Enteric Nervous System at Single-Cell Resolution. PMID:32888429
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications. PMID:32873787
Universal motion of mirror-symmetric microparticles in confined Stokes flow. PMID:32839312
Combined Porogen Leaching and Emulsion Templating to produce Bone Tissue Engineering Scaffolds. PMID:32782992
Imaging methods are vastly underreported in biomedical research. PMID:32780019
Gap junctions deliver malonyl-CoA from soma to germline to support embryogenesis in Caenorhabditis elegans. PMID:32735213
Ketogenic Diet Provided During Three Months Increases KCC2 Expression but Not NKCC1 in the Rat Dentate Gyrus. PMID:32733191
3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing. PMID:32719531
Multiparametric Analysis of Longitudinal Quantitative MRI data to Identify Distinct Tumor Habitats in Preclinical Models of Breast Cancer. PMID:32599906
Tetramerisation of the CRISPR ring nuclease Crn3/Csx3 facilitates cyclic oligoadenylate cleavage. PMID:32597755
The fasn-1(g14ts) allele is a Gly1830Arg missense mutation in C. elegans FASN-1. PMID:32550489
Caenorhabditis elegans PIEZO channel coordinates multiple reproductive tissues to govern ovulation. PMID:32490809
TissUUmaps: interactive visualization of large-scale spatial gene expression and tissue morphology data. PMID:32449759
CofActor: A light- and stress-gated optogenetic clustering tool to study disease-associated cytoskeletal dynamics in living cells. PMID:32424038
CytoCensus, mapping cell identity and division in tissues and organs using machine learning. PMID:32423529
eBreCaP: extreme learning-based model for breast cancer survival prediction. PMID:32406380
Community standards for open cell migration data. PMID:32396199
Primary Human Osteoblasts Cultured in a 3D Microenvironment Create a Unique Representative Model of Their Differentiation Into Osteocytes. PMID:32391343
Bacterial cell growth is arrested by violet and blue, but not yellow light excitation during fluorescence microscopy. PMID:32357828
Crocetin Prevents RPE Cells from Oxidative Stress through Protection of Cellular Metabolic Function and Activation of ERK1/2. PMID:32331354
Multiresolution Application of Artificial Intelligence in Digital Pathology for Prediction of Positive Lymph Nodes From Primary Tumors in Bladder Cancer. PMID:32330067
Effect of Vectashield-induced fluorescence quenching on conventional and super-resolution microscopy. PMID:32296095
Tutorial: guidance for quantitative confocal microscopy. PMID:32235926
Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid. PMID:32210076
GLP-1 Notch-LAG-1 CSL control of the germline stem cell fate is mediated by transcriptional targets lst-1 and sygl-1. PMID:32196486
Spatial density and diversity of architectural histology in prostate cancer: influence on diffusion weighted magnetic resonance imaging. PMID:32190560
Structure and mechanism of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate. PMID:31980625
An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity. PMID:31942067
Video compression to support the expansion of whole-slide imaging into cytology. PMID:31890747
HHV-7 U21 exploits Golgi quality control carriers to reroute class I MHC molecules to lysosomes. PMID:31851583
Replication Study: Biomechanical remodeling of the microenvironment by stromal caveolin-1 favors tumor invasion and metastasis. PMID:31845647
High Throughput Traction Force Microscopy for Multicellular Islands on Combinatorial Microarrays. PMID:31815156
Aurora B functions at the apical surface after specialized cytokinesis during morphogenesis in C. elegans. PMID:31806662
Long-term monitoring in a microfluidic system to study tumour spheroid response to chronic and cycling hypoxia. PMID:31780697
Developmental Stage-Specific Distribution of Macrophages in Mouse Mammary Gland. PMID:31709255
Testing Models of mRNA Localization Reveals Robustness Regulated by Reducing Transport between Cells. PMID:31708163
Facile autofluorescence suppression enabling tracking of single viruses in live cells. PMID:31694918
Dendritic Cell Vaccination in Metastatic Melanoma Turns "Non-T Cell Inflamed" Into "T-Cell Inflamed" Tumors. PMID:31649669
Quantifying cellulose accessibility during enzyme-mediated deconstruction using 2 fluorescence-tagged carbohydrate-binding modules. PMID:31636211
Bringing Open Data to Whole Slide Imaging. PMID:31579322
Fog signaling has diverse roles in epithelial morphogenesis in insects. PMID:31573513
Gotta Trace 'em All: A Mini-Review on Tools and Procedures for Segmenting Single Neurons Toward Deciphering the Structural Connectome. PMID:31555642
mycelyso - high-throughput analysis of Streptomyces mycelium live cell imaging data. PMID:31484491
β-glucan-dependent shuttling of conidia from neutrophils to macrophages occurs during fungal infection establishment. PMID:31483778
The BEACH Domain Is Critical for Blue Cheese Function in a Spatial and Epistatic Autophagy Hierarchy. PMID:31428609
Nessys: A new set of tools for the automated detection of nuclei within intact tissues and dense 3D cultures. PMID:31398189
IA-Lab: A MATLAB framework for efficient microscopy image analysis development, applied to quantifying intracellular transport of internalized peptide-drug conjugate. PMID:31369634
Factors Controlling Floc Formation and Structure in the Cyanobacterium Synechocystis sp. Strain PCC 6803. PMID:31262837
Hydra image processor: 5-D GPU image analysis library with MATLAB and python wrappers. PMID:31240306
Light-dependent single-cell heterogeneity in the chloroplast redox state regulates cell fate in a marine diatom. PMID:31232691
Longitudinal preclinical magnetic resonance imaging of diffuse tumor burden in intramedullary myeloma following bortezomib therapy. PMID:31206946
Fast and reliable advanced two-step pore-size analysis of biomimetic 3D extracellular matrix scaffolds. PMID:31175320
Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data. PMID:31126321
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues. PMID:31110282
Biomedical Image Processing with Containers and Deep Learning: An Automated Analysis Pipeline: Data architecture, artificial intelligence, automated processing, containerization, and clusters orchestration ease the transition from data acquisition to insights in medium-to-large datasets. PMID:31094000
Full volume super-resolution imaging of thick mitotic spindle using 3D AO STED microscope. PMID:31086714
Open access image repositories: high-quality data to enable machine learning research. PMID:31040006
Targeting LIF-mediated paracrine interaction for pancreatic cancer therapy and monitoring. PMID:30996350
Fluorescence-detected linear dichroism imaging in a re-scan confocal microscope equipped with differential polarization attachment. PMID:30982120
Yap and its subcellular localization have distinct compartment-specific roles in the developing lung. PMID:30944105
Designing a rigorous microscopy experiment: Validating methods and avoiding bias. PMID:30894402
Calculating the motion of highly confined, arbitrary-shaped particles in Hele-Shaw channels. PMID:30881266
Independent and Collaborative Visualization Tool Development. PMID:30869597
Data science for the scientific life cycle. PMID:30839275
High-throughput Evaluation of Protein Migration and Localization after Laser Micro-Irradiation. PMID:30816253
Universal light-sheet generation with field synthesis. PMID:30804550
Missense variants in NOX1 and p22phox in a case of very-early-onset inflammatory bowel disease are functionally linked to NOD2. PMID:30709874
DEFiNE: A Method for Enhancement and Quantification of Fluorescently Labeled Axons. PMID:30687025
SOD1 activity threshold and TOR signalling modulate VAP(P58S) aggregation via reactive oxygen species-induced proteasomal degradation in a Drosophila model of amyotrophic lateral sclerosis. PMID:30635270
A high-avidity biosensor reveals plasma membrane PI(3,4)P2 is predominantly a class I PI3K signaling product. PMID:30591513
Spatial patterning of liver progenitor cell differentiation mediated by cellular contractility and Notch signaling. PMID:30589410
Hyperoxia-induced Cellular Senescence in Fetal Airway Smooth Muscle Cells. PMID:30508396
Accelerating single molecule localization microscopy through parallel processing on a high-performance computing cluster. PMID:30508256
Temperature Sensing Is Distributed throughout the Regulatory Network that Controls FLC Epigenetic Silencing in Vernalization. PMID:30503646
A rapid computational approach identifies SPICE1 as an Aurora kinase substrate. PMID:30485161
Characterizing Trastuzumab-Induced Alterations in Intratumoral Heterogeneity with Quantitative Imaging and Immunohistochemistry in HER2+ Breast Cancer. PMID:30472501
Quantifying Tissue-Specific Overexpression of FOXO in Drosophila via mRNA Fluorescence In Situ Hybridization Using Branched DNA Probe Technology. PMID:30414154
A call for public archives for biological image data. PMID:30377375
Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID. PMID:30341436
DREADD technology reveals major impact of Gq signalling on cardiac electrophysiology. PMID:30321287
Disrupted alternative splicing for genes implicated in splicing and ciliogenesis causes PRPF31 retinitis pigmentosa. PMID:30315276
Ring nucleases deactivate type III CRISPR ribonucleases by degrading cyclic oligoadenylate. PMID:30232454
Remodeling neuronal ER-PM junctions is a conserved nonconducting function of Kv2 plasma membrane ion channels. PMID:30091655
Iron-Sulfur Cluster Biosynthesis in Algae with Complex Plastids. PMID:30085124
Fabrication approaches for the creation of physical models from microscopy data. PMID:30050979
Optimal fluorescent protein tags for quantifying protein oligomerization in living cells. PMID:30006597
Control of cyclic oligoadenylate synthesis in a type III CRISPR system. PMID:29963983
Characterization of an Inducible Alcoholic Liver Fibrosis Model for Hepatocellular Carcinoma Investigation in a Transgenic Porcine Tumorigenic Platform. PMID:29887183
Sharing and reusing cell image data. PMID:29851565
Semi-automated quantification and neuroanatomical mapping of heterogeneous cell populations. PMID:29782884
Automated Morphological Analysis of Microglia After Stroke. PMID:29725290
Investigation of Protein Recruitment to DNA Lesions Using 405 Nm Laser Micro-irradiation. PMID:29630045
Quantitative SIMS Imaging of Agar-Based Microbial Communities. PMID:29623707
Degenerate Pax2 and Senseless binding motifs improve detection of low-affinity sites required for enhancer specificity. PMID:29617378
β-Secretase BACE1 Promotes Surface Expression and Function of Kv3.4 at Hippocampal Mossy Fiber Synapses. PMID:29507146
Transcriptional Regulation of Carnitine Catabolism in Pseudomonas aeruginosa by CdhR. PMID:29435492
Stellate Cells in the Medial Entorhinal Cortex Are Required for Spatial Learning. PMID:29386117
NETQUANT: Automated Quantification of Neutrophil Extracellular Traps. PMID:29379509
Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts. PMID:29349300
WorMachine: machine learning-based phenotypic analysis tool for worms. PMID:29338709
QuPath: Open source software for digital pathology image analysis. PMID:29203879
ImageJ2: ImageJ for the next generation of scientific image data. PMID:29187165
An adaptation of astronomical image processing enables characterization and functional 3D mapping of individual sites of excitation-contraction coupling in rat cardiac muscle. PMID:29135437
Pharmacological augmentation of nicotinamide phosphoribosyltransferase (NAMPT) protects against paclitaxel-induced peripheral neuropathy. PMID:29125463
A New Role for Helicobacter pylori Urease: Contributions to Angiogenesis. PMID:29021786
Direct evidence of amyloid precursor-like protein 1 trans interactions in cell-cell adhesion platforms investigated via fluorescence fluctuation spectroscopy. PMID:29021345
Enrichment of dynamic chromosomal crosslinks drive phase separation of the nucleolus. PMID:28977453
The duration of mitosis and daughter cell size are modulated by nutrients in budding yeast. PMID:28939614
Protein-Mediated Colloidal Assembly. PMID:28898068
Heterogeneity in Kv2 Channel Expression Shapes Action Potential Characteristics and Firing Patterns in CA1 versus CA2 Hippocampal Pyramidal Neurons. PMID:28856240
Methods for Quantifying Fibrillar Collagen Alignment. PMID:28836218
Protease dead separase inhibits chromosome segregation and RAB-11 vesicle trafficking. PMID:28820333
Quantitative Dextran Trafficking to the Coxiella burnetii Parasitophorous Vacuole. PMID:28800156
Long-term direct visualization of passively transferred fluorophore-conjugated antibodies. PMID:28780040
The Image Data Resource: A Bioimage Data Integration and Publication Platform. PMID:28775673
Challenges for visualizing three-dimensional data in genomic browsers. PMID:28771695
A durable and biocompatible ascorbic acid-based covalent coating method of polydimethylsiloxane for dynamic cell culture. PMID:28747398
SlideJ: An ImageJ plugin for automated processing of whole slide images. PMID:28683129
Spatial analysis of Cdc42 activity reveals a role for plasma membrane-associated Cdc42 in centrosome regulation. PMID:28539409
Spectral imaging toolbox: segmentation, hyperstack reconstruction, and batch processing of spectral images for the determination of cell and model membrane lipid order. PMID:28494801
MAARS: a novel high-content acquisition software for the analysis of mitotic defects in fission yeast. PMID:28450455
Activation of the hypothalamic feeding centre upon visual prey detection. PMID:28425439
Quantitative 3D structured illumination microscopy of nuclear structures. PMID:28406495
Input-Specific Plasticity and Homeostasis at the Drosophila Larval Neuromuscular Junction. PMID:28285823
Automated mitotic spindle tracking suggests a link between spindle dynamics, spindle orientation, and anaphase onset in epithelial cells. PMID:28100633
A method for detecting single mRNA molecules in Arabidopsis thaliana. PMID:28035231
The brain parenchyma has a type I interferon response that can limit virus spread. PMID:27980033
Imaging the mammary gland and mammary tumours in 3D: optical tissue clearing and immunofluorescence methods. PMID:27964754
SCIFIO: an extensible framework to support scientific image formats. PMID:27927161
jicbioimage: a tool for automated and reproducible bioimage analysis. PMID:27896026
Highly aligned stromal collagen is a negative prognostic factor following pancreatic ductal adenocarcinoma resection. PMID:27776346
Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machine Experiments. PMID:27661996
SNARE-mediated Fusion of Single Proteoliposomes with Tethered Supported Bilayers in a Microfluidic Flow Cell Monitored by Polarized TIRF Microscopy. PMID:27585113
Technical Challenges of Enterprise Imaging: HIMSS-SIIM Collaborative White Paper. PMID:27576909
Diffusion Tensor Analysis by Two-Dimensional Pair Correlation of Fluorescence Fluctuations in Cells. PMID:27558727
Analysis of RPE morphometry in human eyes. PMID:27555739
Mechanisms by Which Interleukin-12 Corrects Defective NK Cell Anticryptococcal Activity in HIV-Infected Patients. PMID:27555306
Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features. PMID:27527408
LEVER: software tools for segmentation, tracking and lineaging of proliferating cells. PMID:27423896
Scaling effect on the mid-diaphysis properties of long bones-the case of the Cervidae (deer). PMID:27350329
Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned. PMID:27255914
Quantifying the plant actin cytoskeleton response to applied pressure using nanoindentation. PMID:27180193
KiT: a MATLAB package for kinetochore tracking. PMID:27153705
Nuclear transport of paxillin depends on focal adhesion dynamics and FAT domains. PMID:27068537
From morphology to biochemical state - intravital multiphoton fluorescence lifetime imaging of inflamed human skin. PMID:27004454
Advanced Intestinal Cancers often Maintain a Multi-Ancestral Architecture. PMID:26919712
Web-based volume slicer for 3D electron-microscopy data from EMDB. PMID:26876163
Microscopy Image Browser: A Platform for Segmentation and Analysis of Multidimensional Datasets. PMID:26727152
Ceramides And Stress Signalling Intersect With Autophagic Defects In Neurodegenerative Drosophila blue cheese (bchs) Mutants. PMID:26639035
High-throughput imaging: Focusing in on drug discovery in 3D. PMID:26608110
Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes. PMID:26498517
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping. PMID:26492141
Metadata management for high content screening in OMERO. PMID:26476368
TASK Channels on Basal Forebrain Cholinergic Neurons Modulate Electrocortical Signatures of Arousal by Histamine. PMID:26446210
High-throughput fluorescence imaging approaches for drug discovery using in vitro and in vivo three-dimensional models. PMID:26394277
Periductal stromal collagen topology of pancreatic ductal adenocarcinoma differs from that of normal and chronic pancreatitis. PMID:26336888
A novel assay uncovers an unexpected role for SR-BI in LDL transcytosis. PMID:26334034
K-factor image deshadowing for three-dimensional fluorescence microscopy. PMID:26333693
Structural organization of nuclear lamins A, C, B1, and B2 revealed by superresolution microscopy. PMID:26310440
BEMOVI, software for extracting behavior and morphology from videos, illustrated with analyses of microbes. PMID:26257872
The yeast genome undergoes significant topological reorganization in quiescence. PMID:26202961
Biomedical imaging ontologies: A survey and proposal for future work. PMID:26167381
The ImageJ ecosystem: An open platform for biomedical image analysis. PMID:26153368
Spatiotemporal dynamics of traction forces show three contraction centers in migratory neurons. PMID:26056143
BigDataViewer: visualization and processing for large image data sets. PMID:26020499
Intuitive web-based experimental design for high-throughput biomedical data. PMID:25954760
A Synthetic Lethal Screen Identifies a Role for Lin-44/Wnt in C. elegans Embryogenesis. PMID:25938228
Genetic chimeras reveal the autonomy requirements for Vsx2 in embryonic retinal progenitor cells. PMID:25927996
Design, implementation and operation of a multimodality research imaging informatics repository. PMID:25870760
Optical reconstruction of murine colorectal mucosa at cellular resolution. PMID:25721303
What drives academic data sharing? PMID:25714752
An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution. PMID:25712513
Quantitative analysis and modeling probe polarity establishment in C. elegans embryos. PMID:25692585
IQM: an extensible and portable open source application for image and signal analysis in Java. PMID:25612319
Automated quantification of aligned collagen for human breast carcinoma prognosis. PMID:25250186
Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages. PMID:25230706
GoIFISH: a system for the quantification of single cell heterogeneity from IFISH images. PMID:25168174
Anima: modular workflow system for comprehensive image data analysis. PMID:25126541
Automated quantitative multiplex immunofluorescence in situ imaging identifies phospho-S6 and phospho-PRAS40 as predictive protein biomarkers for prostate cancer lethality. PMID:25075204
Nanoscale protein diffusion by STED-based pair correlation analysis. PMID:24967681
Preparation of mica supported lipid bilayers for high resolution optical microscopy imaging. PMID:24961277
A new tool to quantify receptor recruitment to cell contact sites during host-pathogen interaction. PMID:24874253
Sample drift correction following 4D confocal time-lapse imaging. PMID:24747942
A rapid and efficient 2D/3D nuclear segmentation method for analysis of early mouse embryo and stem cell image data. PMID:24672759
Species-specific differences in the medial prefrontal projections to the pons between rat and rabbit. PMID:24639247
The myImageAnalysis project: a web-based application for high-content screening. PMID:24547743
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh. PMID:24525752
Differential roles of the ubiquitin proteasome system and autophagy in the clearance of soluble and aggregated TDP-43 species. PMID:24424030
A Mason-Pfizer Monkey virus Gag-GFP fusion vector allows visualization of capsid transport in live cells and demonstrates a role for microtubules. PMID:24386297
PCaAnalyser: a 2D-image analysis based module for effective determination of prostate cancer progression in 3D culture. PMID:24278197
ConfocalCheck--a software tool for the automated monitoring of confocal microscope performance. PMID:24224017
BIOCAT: a pattern recognition platform for customizable biological image classification and annotation. PMID:24090164
Clonal variants of Plasmodium falciparum exhibit a narrow range of rolling velocities to host receptor CD36 under dynamic flow conditions. PMID:24014767
RNAi screens in mice identify physiological regulators of oncogenic growth. PMID:23945586
Analyzing huge pathology images with open source software. PMID:23829479
Automated processing of zebrafish imaging data: a survey. PMID:23758125
Software tool for 3D extraction of germinal centers. PMID:23735122
Endrov: an integrated platform for image analysis. PMID:23722203
Proprotein convertase 1/3 (PC1/3) in the rat alveolar macrophage cell line NR8383: localization, trafficking and effects on cytokine secretion. PMID:23637853
CellH5: a format for data exchange in high-content screening. PMID:23595665
Light microscopy applications in systems biology: opportunities and challenges. PMID:23578051
Data management challenges in three-dimensional EM. PMID:23211764
The cell: an image library-CCDB: a curated repository of microscopy data. PMID:23203874
ADAM: automated data management for research datasets. PMID:23109181
Cell-to-cell diversity in a synchronized Chlamydomonas culture as revealed by single-cell analyses. PMID:23009858
ImgLib2--generic image processing in Java. PMID:22962343
NIH Image to ImageJ: 25 years of image analysis. PMID:22930834
Biological imaging software tools. PMID:22743775
BioImageXD: an open, general-purpose and high-throughput image-processing platform. PMID:22743773
A call for bioimaging software usability. PMID:22743771
TrakEM2 software for neural circuit reconstruction. PMID:22723842
Emergent functional properties of neuronal networks with controlled topology. PMID:22493706
Spatial modeling of cell signaling networks. PMID:22482950
OMERO: flexible, model-driven data management for experimental biology. PMID:22373911
High-throughput screening in primary neurons. PMID:22341232
Data ontology and an information system realization for web-based management of image measurements. PMID:22275893
Imaging cardiac extracellular matrices: a blueprint for regeneration. PMID:22209562
New concepts for building vocabulary for cell image ontologies. PMID:22188658
ATOM - an OMERO add-on for automated import of image data. PMID:21978452
Assessing the quality of annotations in asthma gene expression experiments. PMID:21044366
Friends, colleagues, authors, lend us your data. PMID:20921131
Descriptive no more: the dawn of high-throughput microscopy. PMID:20667736 -
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
PubMed citations: 90.
90 articles citing: The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
A data management infrastructure for the integration of imaging and omics data in life sciences. PMID:35130839
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. PMID:34862503
Narrative online guides for the interpretation of digital-pathology images and tissue-atlas data. PMID:34750536
RNA polymerase II clusters form in line with surface condensation on regulatory chromatin. PMID:34569155
Subcellular proteomics. PMID:34549195
High-throughput mapping of a whole rhesus monkey brain at micrometer resolution. PMID:34312500
PicPreview and PicSummary: Two Timesaving Plugins for the Fluorescence Microscopist. PMID:33917996
Microtissue Geometry and Cell-Generated Forces Drive Patterning of Liver Progenitor Cell Differentiation in 3D. PMID:33890430
Transcription organizes euchromatin via microphase separation. PMID:33649325
Community standards for open cell migration data. PMID:32396199
Multiresolution Application of Artificial Intelligence in Digital Pathology for Prediction of Positive Lymph Nodes From Primary Tumors in Bladder Cancer. PMID:32330067
Spatial density and diversity of architectural histology in prostate cancer: influence on diffusion weighted magnetic resonance imaging. PMID:32190560
Engineering Tissue Fabrication With Machine Intelligence: Generating a Blueprint for Regeneration. PMID:31998708
Annot: a Django-based sample, reagent, and experiment metadata tracking system. PMID:31675914
Development of protocols for the first serial block-face scanning electron microscopy (SBF SEM) studies of bone tissue. PMID:31669251
Key challenges facing data-driven multicellular systems biology. PMID:31648301
Bringing Open Data to Whole Slide Imaging. PMID:31579322
Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis. PMID:31570370
Qualifying antibodies for image-based immune profiling and multiplexed tissue imaging. PMID:31534232
The 2019 mathematical oncology roadmap. PMID:30991381
Fluorescence-detected linear dichroism imaging in a re-scan confocal microscope equipped with differential polarization attachment. PMID:30982120
Adaptive particle representation of fluorescence microscopy images. PMID:30514837
Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity. PMID:30254278
Removing physiological motion from intravital and clinical functional imaging data. PMID:29985127
Sharing and reusing cell image data. PMID:29851565
Visualization of Arenavirus RNA Species in Individual Cells by Single-Molecule Fluorescence In Situ Hybridization Suggests a Model of Cyclical Infection and Clearance during Persistence. PMID:29643234
Kaleido: Visualizing Big Brain Data with Automatic Color Assignment for Single-Neuron Images. PMID:29502301
Quantitative imaging of plants: multi-scale data for better plant anatomy. PMID:29370386
ImageJ2: ImageJ for the next generation of scientific image data. PMID:29187165
The Image Data Resource: A Bioimage Data Integration and Publication Platform. PMID:28775673
Knocking down the obstacles to functional genomics data sharing. PMID:28248922
SCIFIO: an extensible framework to support scientific image formats. PMID:27927161
An Interactive Learning Framework for Scalable Classification of Pathology Images. PMID:27796014
TissueWikiMobile: an Integrative Protein Expression Image Browser for Pathological Knowledge Sharing and Annotation on a Mobile Device. PMID:27532057
BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PMID:26978075
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping. PMID:26492141
Metadata management for high content screening in OMERO. PMID:26476368
Survey statistics of automated segmentations applied to optical imaging of mammalian cells. PMID:26472075
High-throughput fluorescence imaging approaches for drug discovery using in vitro and in vivo three-dimensional models. PMID:26394277
Biomedical imaging ontologies: A survey and proposal for future work. PMID:26167381
Fluorescent-protein stabilization and high-resolution imaging of cleared, intact mouse brains. PMID:25993380
Digital Pathology: Data-Intensive Frontier in Medical Imaging: Health-information sharing, specifically of digital pathology, is the subject of this paper which discusses how sharing the rich images in pathology can stretch the capabilities of all otherwise well-practiced disciplines. PMID:25328166
A method for high purity intestinal epithelial cell culture from adult human and murine tissues for the investigation of innate immune function. PMID:25193428
Towards Building a High Performance Spatial Query System for Large Scale Medical Imaging Data. PMID:24501719
A high-performance spatial database based approach for pathology imaging algorithm evaluation. PMID:23599905
Light microscopy applications in systems biology: opportunities and challenges. PMID:23578051
1Click1View: interactive visualization methodology for RNAi cell-based microscopic screening. PMID:23484084
Semantic representation of monogenean haptoral Bar image annotation. PMID:23398696
EMEN2: an object oriented database and electronic lab notebook. PMID:23360752
The cell: an image library-CCDB: a curated repository of microscopy data. PMID:23203874
Using Cell-ID 1.4 with R for microscope-based cytometry. PMID:23026908
Managing and Querying Whole Slide Images. PMID:22844574
BioImageXD: an open, general-purpose and high-throughput image-processing platform. PMID:22743773
A call for bioimaging software usability. PMID:22743771
Web tools for large-scale 3D biological images and atlases. PMID:22676296
OMERO: flexible, model-driven data management for experimental biology. PMID:22373911
Data ontology and an information system realization for web-based management of image measurements. PMID:22275893
New concepts for building vocabulary for cell image ontologies. PMID:22188658
Morphometic analysis of TCGA glioblastoma multiforme. PMID:22185703
A data model and database for high-resolution pathology analytical image informatics. PMID:21845230
BioIMAX: a Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. PMID:21777450
Channeling the data deluge. PMID:21623351
Adaptive informatics for multifactorial and high-content biological data. PMID:21516115
A semantic image annotation model to enable integrative translational research. PMID:21347180
Intelligent Interfaces for Mining Large-Scale RNAi-HCS Image Databases. PMID:21278820
Pattern recognition software and techniques for biological image analysis. PMID:21124870
Metadata matters: access to image data in the real world. PMID:20513764
The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images. PMID:20482811
Visualization of image data from cells to organisms. PMID:20195255
Automated microscopy for high-content RNAi screening. PMID:20176920
Replication factory activation can be decoupled from the replication timing program by modulating Cdk levels. PMID:20083602
Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening. PMID:20041172
Open source bioimage informatics for cell biology. PMID:19833518
Exploration of chromatic aberration for multiplanar imaging: proof of concept with implications for fast, efficient autofocus. PMID:19760744
Information management for high content live cell imaging. PMID:19622144
Generating 'omic knowledge': the role of informatics in high content screening. PMID:19531005
Bioimage informatics for experimental biology. PMID:19416072
Knee x-ray image analysis method for automated detection of osteoarthritis. PMID:19342330
Adaptable data management for systems biology investigations. PMID:19265554
Nonlinear optical imaging of cellular processes in breast cancer. PMID:18986607
Using Cell-ID 1.4 with R for microscope-based cytometry. PMID:18972382
Evaluation of Face Datasets as Tools for Assessing the Performance of Face Recognition Methods. PMID:18776952
IICBU 2008: a proposed benchmark suite for biological image analysis. PMID:18668273
Wndchrm - an open source utility for biological image analysis. PMID:18611266
Systems biology driven software design for the research enterprise. PMID:18578887
An in situ hybridization-based screen for heterogeneously expressed genes in mouse ES cells. PMID:18178135
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. PMID:18054501
Loss of APC induces polyploidy as a result of a combination of defects in mitosis and apoptosis. PMID:17227893
Automated tracking of gene expression in individual cells and cell compartments. PMID:17015304
Imaging of cell migration. PMID:16900100
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biological imaging
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cell
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data storage
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experimental measurement
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experimentally determined
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imaging
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microscopy
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tissue
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biological imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
cell
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data storage
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
experimental measurement
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
experimentally determined
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image
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
microscopy
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
protocol
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study design
metasource: Fairsharing.orgversion: FAIRsharing.org: OME-XML; Open Microscopy Environment eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zk8p4g; Last edited: Feb. 7, 2021, 7:56 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
tissue
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biological imaging cell data storage experimental measurement experimentally determined imaging microscopy protocol study design tissue
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