Tag: zoology

The Gene Ontology resource provides a computational representation of our current scientific knowledge about the functions of genes (or, more properly, the protein and non-coding RNA molecules produced by genes) from many different organisms, from hu ...

The International Mouse Phenotyping Consortium (IMPC) is an international effort by 21 research institutions to identify the function of every protein-coding gene in the mouse genome. To achieve this, the IMPC is systematically switching off or ‘knoc ...

This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The purpose of this database is to advance research on cellular ...

The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped ...

microRNA-mRNA interaction maps

REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly regulatory elements along with their DNA sequence ...

Useful biological numbers

AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.

miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being gradually developed to create an integrative resource of miRNA-associated data. The data comes from our computational predictions (new miRNAs, targets, mi ...

dbSUPER is the first integrated and interactive database of super-enhancers, which contains 82234 super-enhancers in 102 human and 25 mouse tissue/cell types.

Sequence, structure and activity of protein toxins from spider venom

PRGdb is an open and daily updated space about plant resistance genes, in which all information about this family is stored, curated and discussed. This resource encourages research community curation of plant resistance genes.

The ApiDB website (http://eupathdb.org/eupathdb) represents a unified entry point for the NIH-funded Apicomplexan Bioinformatics Resource Center that integrates numerous database resources. The phylum Apicomplexa comprises numerous veterinary and med ...

The Bovine Genome Database project is developed to support the efforts of bovine genomics researchers by providing data mining, genome navigation and annotation tools for the bovine reference genome based on the hereford cow, L1 Dominette 01449.

The Immuno Polymorphism Database (IPD) is a set of specialist databases related to the study of polymorphic genes in the immune system. IPD currently consists of four databases: IPD-KIR, contains the allelic sequences of Killer-cell Immunoglobulin-li ...

Nematode.net is the home page of the parasitic nematode EST project at The Genome Institute at Washington University in St. Louis. The site was established in 2000 as a component of the NIH-NIAID grant "A Genomic Approach to Parasites from the Phylum ...

Mitochondrial genome database of fish with an accurate and automatic annotation pipeline.

<<<!!!<<< This repository is no longer available >>>!!!>>>

The GrainGenes website hosts a wealth of information for researchers working on Triticeae species, oat and their wild relatives. The website hosts a database encompassing information such as genetic maps, genes, alleles, genetic markers, phenotypic d ...

This tool is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. The system also simplifies cross-databas ...

Coexpressed genes and networks in human and mouse

PDBselect (http://bioinfo.tg.fh-giessen.de/pdbselect/) is a list of representative protein chains with low mutal sequence identity selected from the protein data bank (PDB) to enable unbiased statistics. The list increased from 155 chains in 1992 to ...

Analyzing curated annotations to associate animal models with human diseases.

The MMRRC distributes and cryopreserves scientifically valuable, genetically engineered mouse strains and mouse ES cell lines with potential value for the genetics and biomedical research community. The Catalog provides information on the strains ava ...

Wiki for coordinating nematode sequencing projects

Curated compendium of specific DNA-binding RNA polymerase II transcription factors.

Anatomy ontology for planaria and terms specific to the developmental stages of the planarian Schmidtea mediterranea. As the regenerative flatworm Schmidtea mediterranea gains popularity as a developmental research organism the need for standard nome ...

Mutant mouse lines held at MRC Harwell

Comparative genomics of Fusarium strains

GELBANK is a publicly available database of two-dimensional gel electrophoresis (2DE) gel images of proteomes from organisms with known genome information (available at http://gelbank.anl.gov). GELBANK serves as a database for those proteomics labs t ...

> CORRECT NAME OF TOOL COULD ALSO BE 'TreeshrewDB v2.0' | Chromosomal level assembly and population sequencing of the Chinese tree shrew genome | Symbol Accession number Full gene name | &nbspFan Y, Yu D et al., 2014. Tree shrew database (TreeshrewDB ...

Databases for genetic resources and plant disease information

System for collecting, preserving and providing bioresources for use as experimental materials for life science research.

The Canadian Rare Diseases Models and Mechanisms (RDMM) Network. Japanese Rare Disease Models & Mechanisms Network.

The British natural history collection is one of the most important in the world, documenting 4.5 billion years of life, the Earth and the solar system. Almost all animal, plant, mineral and fossil groups are represented. The portal's main dataset co ...

Laminins (LM) correspond to a large number of heretotrimeric glycoproteins, playing and a major role in several cell functions, including differentiation, proliferation, adhesion, and migration [1-3]. In addition to binding to other extracellular mat ...

A database for the integration and access to knowledge on host-symbiont relationships.

Animal Social Networks Repository - repository of interaction data from published studies of wild, captive, and domesticated animals.

A comprehensive database with multiple animal reference panels for genotype imputation.

Re-annotating oligo sets used for expression microarrays is essential to supply biologists with up-to-date annotations. The tool is a query environment populated with regularly updated annotations for different oligo sets. It permits easy extraction ...

A database for construction and analysis of functional interaction networks for any species with a sequenced genome. Earth BioGenome Project has been officially launched in November 2018 with the goal of decoding genomes of Earth’s biome over a peri ...

The database of zoonotic and vector-borne viruses.

A database for single-cell screening of virus target cells in the animal kingdom.

A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences.

WCO-Lite is an online nomenclatural catalogue of harvestmen of the world (Arachnida, Opiliones) curated in TaxonWorks.

A database for alternative splicing atlas in livestock animals. The alternative splicing in livestock animals database (ASlive.org) is a collection of alternative splicing events across tissues in livestock animal speceis in including cattle (Bos ta ...

open-access repository for surveys of antimicrobial resistance in animals.

A global database for bats in karsts and caves.

A comprehensive mitochondrial genome database for Mollusca.

A database for drug-resistant probiotic bacteria.

A comprehensive database of long inverted repeats in eukaryotic genomes.

An integrative database for traditional Chinese medicine plant genomes.

An integrative database of the expression dynamics of proteins in response to hypoxia in animals.

A Comprehensive Protein-coding Gene Origination Database on the Evolutionary Timescale of Life.

A PIWI-bound piRNAs database to mining NGS sncRNA data and beyond.

HORDB a comprehensive database of peptide hormones.

ETph is a database for enhancer and their targets in pig and human.

A platform dedicated to the visualization and analysis of protist co-expression and co-function networks.

A comprehensive repetitive sequence database of over 80 000 species.

GGVD is a goat genome variation database for tracking the dynamic evolutionary process of selective signatures and ancient introgressions.

Publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis.

A database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species.

AnimalTraits is a curated database containing body mass, metabolic rate and brain size measurements across a wide range of terrestrial animal taxa.

A systematic evidence map of health studies on 29 per- and polyfluoroalkyl substances.

CRB-Anim is the online catalog of biological resources of the french national infrastructure supporting research on domestic animals.

Rcompadre and Rage are two R packages to facilitate the use of the COMPADRE and COMADRE databases and calculation of life history traits from matrix population models. It is an R package to facilitate working with the COM(P)ADRE Plant and Animal Matr ...

A comprehensive animal enhancer RNA database.

A Database of Regulatory SNPs for Agricultural Animal Species.

The Animal Proteome Database (AniProtDB) is a comprehensive collection of proteomes from 100 species spanning 21 animal phyla. In addition to providing open access to this collection of high-quality metazoan proteomes, information on predicted protei ...

Database containing 4.373 video, 18.212 still images and 7.771 labels concerning sampled that were prepared and stored from 1910 at the “Stazione Zoologica Anton Dohrn di Napoli (SZN)”. Moreover, the digitised version of 38 documents (totalling 8406 ...

database for eukaryotic single-exon coding sequences. Single-exon coding sequences (CDSs), also known as 'single-exon genes' (SEGs), are defined as nuclear, protein-coding genes that lack introns in their CDSs. They have been studied not only to det ...

A Web Resource of Structure-Function Annotations to Unravel the Allostery of Nicotinic Acetylcholine Receptors. Database of structural-functional annotations of nicotinic acetylcholine receptors. NAChRDB is a web-accessible database of residue-leve ...

The project aims to examine and index the genomic diversity through the generation of complete mitochondrial and nuclear genome sequences of sharks and rays of the Pacific Rim. There is a huge diversity of elasmobranch fishes in this region, but many ...

An online database for the dragonflies and damselflies of Bangladesh. Welcome to the Odonata of Bangladesh, database of the dragonflies and damselflies of Bangladesh. Situated in the South-east Asia, Bangladesh is gifted with the rich network of wat ...

An integrative platform for comparative and functional genomics of marmots. iMarmot: an integrative Marmot database. Marmots are large Holarctic rodents in the genus Marmota with 14 living species. Most marmot species occupy a harsh environment cha ...

A collective database of helmeted guinea fowl genomics. Helmeted guinea fowl (HGF; Numida meleagris) is vigorous, hardy, and mostly disease-free game birds. The rearing of HGF is a potential alternative poultry system. Because of the characteristics ...