Regulatory effects of the Uty/Ddx3y locus on neighboring chromosome Y genes and autosomal mRNA transcripts in adult mouse non-reproductive cells.
PMID:32913328
Network-guided search for genetic heterogeneity between gene pairs.
PMID:32573681
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference.
PMID:30462320
Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data.
PMID:30371680
Towards a gene regulatory network shaping the fins of the Princess cichlid.
PMID:29942008
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index.
PMID:29216398
Anterior-posterior gene expression differences in three Lake Malawi cichlid fishes with variation in body stripe orientation.
PMID:29158996
Modular reorganization of the global network of gene regulatory interactions during perinatal human brain development.
PMID:27175727
Investigation of the effects of estrogen on skeletal gene expression during zebrafish larval head development.
PMID:27069811
MIrExpress: A Database for Gene Coexpression Correlation in Immune Cells Based on Mutual Information and Pearson Correlation.
PMID:26881263
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression.
PMID:26546318
Differential expression of the aryl hydrocarbon receptor pathway associates with craniofacial polymorphism in sympatric Arctic charr.
PMID:26388986
Modular and coordinated expression of immune system regulatory and signaling components in the developing and adult nervous system.
PMID:26379506
Proportionality: a valid alternative to correlation for relative data.
PMID:25775355
Protein complex discovery by interaction filtering from protein interaction networks using mutual rank coexpression and sequence similarity.
PMID:25692131
A systems-level approach to parental genomic imprinting: the imprinted gene network includes extracellular matrix genes and regulates cell cycle exit and differentiation.
PMID:25614607
Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr.
PMID:25419450
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.
PMID:25392420
Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data.
PMID:25300367
Deregulation of the replisome factor MCMBP prompts oncogenesis in colorectal carcinomas through chromosomal instability.
PMID:25246271
Efficient and simple production of insulin-producing cells from embryonal carcinoma stem cells using mouse neonate pancreas extract, as a natural inducer.
PMID:24614166
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa.
PMID:24498971
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.
PMID:24334350
Orchestration of neurodevelopmental programs by RBFOX1: implications for autism spectrum disorder.
PMID:24290388
Nodes and biological processes identified on the basis of network analysis in the brain of the senescence accelerated mice as an Alzheimer's disease animal model.
PMID:24194717
Integrative 'omic' approach towards understanding the nature of human diseases.
PMID:24052743
The interaction of polymorphisms of IL10 and DBH was associated with general symptoms of PANSS with TD in Chinese Han schizophrenic patients.
PMID:23951054
MelanomaDB: A Web Tool for Integrative Analysis of Melanoma Genomic Information to Identify Disease-Associated Molecular Pathways.
PMID:23875173
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis.
PMID:23650583
Protein complex-based analysis framework for high-throughput data sets.
PMID:23443684
Network graph analysis of gene-gene interactions in genome-wide association study data.
PMID:23346039
Reuse of public genome-wide gene expression data.
PMID:23269463
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.
PMID:23203868
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments.
PMID:23071097
Coevolution reveals a network of human proteins originating with multicellularity.
PMID:22977115
Genome-wide matching of genes to cellular roles using guilt-by-association models derived from single sample analysis.
PMID:22824328
CombFunc: predicting protein function using heterogeneous data sources.
PMID:22641853
Cell cycle gene networks are associated with melanoma prognosis.
PMID:22536322
Spatial proximity and similarity of the epigenetic state of genome domains.
PMID:22496774
GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
PMID:22369687
Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks.
PMID:22369639
LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes.
PMID:22267903
OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm.
PMID:21912859
Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice.
PMID:21606319
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants.
PMID:21217125