COXPRESdb

Names
More detailed information about this field from each metasource.

COXPRESdb
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:21.567213

coxpresdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:21.567213

Other names: coxpresdb

Coexpressed genes and networks in human and mouse

Webpage:

http://coxpresdb.jp/

Publications:

Publications
More detailed information about this field from each metasource.

COXPRESdb: a database to compare gene coexpression in seven model animals
PMID: 21081562
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:21.567213

http://dx.doi.org/10.1093/nar/gku1163
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

COXPRESdb: a database to compare gene coexpression in seven model animals PubMed citations: 45.

45 articles citing: COXPRESdb: a database to compare gene coexpression in seven model animals

Regulatory effects of the Uty/Ddx3y locus on neighboring chromosome Y genes and autosomal mRNA transcripts in adult mouse non-reproductive cells. PMID:32913328
Network-guided search for genetic heterogeneity between gene pairs. PMID:32573681
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. PMID:30462320
Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data. PMID:30371680
Towards a gene regulatory network shaping the fins of the Princess cichlid. PMID:29942008
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index. PMID:29216398
Anterior-posterior gene expression differences in three Lake Malawi cichlid fishes with variation in body stripe orientation. PMID:29158996
Modular reorganization of the global network of gene regulatory interactions during perinatal human brain development. PMID:27175727
Investigation of the effects of estrogen on skeletal gene expression during zebrafish larval head development. PMID:27069811
MIrExpress: A Database for Gene Coexpression Correlation in Immune Cells Based on Mutual Information and Pearson Correlation. PMID:26881263
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression. PMID:26546318
Differential expression of the aryl hydrocarbon receptor pathway associates with craniofacial polymorphism in sympatric Arctic charr. PMID:26388986
Modular and coordinated expression of immune system regulatory and signaling components in the developing and adult nervous system. PMID:26379506
Proportionality: a valid alternative to correlation for relative data. PMID:25775355
Protein complex discovery by interaction filtering from protein interaction networks using mutual rank coexpression and sequence similarity. PMID:25692131
A systems-level approach to parental genomic imprinting: the imprinted gene network includes extracellular matrix genes and regulates cell cycle exit and differentiation. PMID:25614607
Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr. PMID:25419450
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. PMID:25392420
Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data. PMID:25300367
Deregulation of the replisome factor MCMBP prompts oncogenesis in colorectal carcinomas through chromosomal instability. PMID:25246271
Efficient and simple production of insulin-producing cells from embryonal carcinoma stem cells using mouse neonate pancreas extract, as a natural inducer. PMID:24614166
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa. PMID:24498971
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. PMID:24334350
Orchestration of neurodevelopmental programs by RBFOX1: implications for autism spectrum disorder. PMID:24290388
Nodes and biological processes identified on the basis of network analysis in the brain of the senescence accelerated mice as an Alzheimer's disease animal model. PMID:24194717
Integrative 'omic' approach towards understanding the nature of human diseases. PMID:24052743
The interaction of polymorphisms of IL10 and DBH was associated with general symptoms of PANSS with TD in Chinese Han schizophrenic patients. PMID:23951054
MelanomaDB: A Web Tool for Integrative Analysis of Melanoma Genomic Information to Identify Disease-Associated Molecular Pathways. PMID:23875173
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis. PMID:23650583
Protein complex-based analysis framework for high-throughput data sets. PMID:23443684
Network graph analysis of gene-gene interactions in genome-wide association study data. PMID:23346039
Reuse of public genome-wide gene expression data. PMID:23269463
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. PMID:23203868
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097
Coevolution reveals a network of human proteins originating with multicellularity. PMID:22977115
Genome-wide matching of genes to cellular roles using guilt-by-association models derived from single sample analysis. PMID:22824328
CombFunc: predicting protein function using heterogeneous data sources. PMID:22641853
Cell cycle gene networks are associated with melanoma prognosis. PMID:22536322
Spatial proximity and similarity of the epigenetic state of genome domains. PMID:22496774
GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group. PMID:22369687
Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks. PMID:22369639
LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes. PMID:22267903
OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm. PMID:21912859
Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice. PMID:21606319
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. PMID:21217125
http://dx.doi.org/10.1093/nar/gku1163

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Tags
More detailed information about this field from each metasource.

nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

zoology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:21.567213

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:21.567213

plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:21.567213

nucleic acid sequence transcription zoology molecular interactions, pathways and networks plant biology

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