R3KK7K last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

ipd
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

Other names: Immuno Polymorphism Database, IPD, ipd

The Immuno Polymorphism Database (IPD) is a set of specialist databases related to the study of polymorphic genes in the immune system. IPD currently consists of four databases: IPD-KIR, contains the allelic sequences of Killer-cell Immunoglobulin-like Receptors, IPD-MHC, is a database of sequences of the major histocompatibility complex of different species; IPD-HPA, alloantigens expressed only on platelets; and IPD-ESTAB, which provides access to the European Searchable Tumour Cell-Line Database, a cell bank of immunologically characterised melanoma cell lines. The IPD project works with specialist groups or nomenclature committees who provide and curate individual sections before they are submitted to IPD for online publication. The IPD project stores all the data in a set of related databases. Those sections with similar data, such as IPD-KIR and IPD-MHC share the same database structure. The sharing of a common database structure makes it easier to implement common tools for data submission and retrieval. The data is currently available online from the website and ftp directory; files will also be made available in different formats to download from the website and ftp server. The data will also be included into SRS, BLAST and FASTA search engines at the European Bioinformatics Institute.

Webpage:

http://www.ebi.ac.uk/ipd/

Licence:

Name: CC
URL: https://creativecommons.org/licenses/by-nd/4.0/

Publications:

Publications
More detailed information about this field from each metasource.

IPD--the Immuno Polymorphism Database
PMID: 19875415
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

http://dx.doi.org/10.1093/nar/gku1161
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

IPD--the Immuno Polymorphism Database PubMed citations: 70.

70 articles citing: IPD--the Immuno Polymorphism Database

Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes. PMID:35410384
ERAP, KIR, and HLA-C Profile in Recurrent Implantation Failure. PMID:34745129
Donor Killer Immunoglobulin Receptor Gene Content and Ligand Matching and Outcomes of Pediatric Patients with Juvenile Myelomonocytic Leukemia Following Unrelated Donor Transplantation. PMID:34407489
Targeting NK Cell Inhibitory Receptors for Precision Multiple Myeloma Immunotherapy. PMID:33304346
Human Platelet Antigen Datasets for Malays, Chinese, and Indians in Peninsular Malaysia. PMID:32539307
KIR and HLA-C genes in male infertility. PMID:32436047
Immunogenetics in stem cell donor registry work: The DKMS example (Part 2). PMID:32034894
The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system. PMID:31641782
Nomenclature report 2019: major histocompatibility complex genes and alleles of Great and Small Ape and Old and New World monkey species. PMID:31624862
Monkeying Around: Using Non-human Primate Models to Study NK Cell Biology in HIV Infections. PMID:31191520
Fluctuating and Geographically Specific Selection Characterize Rapid Evolution of the Human KIR Region. PMID:31156615
Allele and haplotype frequencies of human platelet and leukocyte antigens in platelet donors. PMID:30758400
Design and Validation of a Multiplex KIR and HLA Class I Genotyping Method Using Next Generation Sequencing. PMID:30619344
Extensive Alternative Splicing of KIR Transcripts. PMID:30564240
Single-cell reconstruction of the early maternal-fetal interface in humans. PMID:30429548
Report from the Killer-cell Immunoglobulin-like Receptors (KIR) component of the 17th International HLA and Immunogenetics Workshop. PMID:30321631
KIR content genotypes associate with carriage of hepatitis B surface antigen, e antigen and HBV viral load in Gambians. PMID:29149205
AIDS in chimpanzees: the role of MHC genes. PMID:28695283
Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis. PMID:28348866
2.7 million samples genotyped for HLA by next generation sequencing: lessons learned. PMID:28196473
Allelic Polymorphism Determines Surface Expression or Intracellular Retention of the Human NK Cell Receptor KIR2DL5A (CD158f). PMID:28144240
Activating KIR2DS4 Is Expressed by Uterine NK Cells and Contributes to Successful Pregnancy. PMID:27815424
High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs. PMID:27792722
Genetic barriers in transplantation medicine. PMID:27683631
A novel RNAseq-assisted method for MHC class I genotyping in a non-model species applied to a lethal vaccination-induced alloimmune disease. PMID:27188848
Gene Association with Leprosy: A Review of Published Data. PMID:26793196
Comprehensive red blood cell and platelet antigen prediction from whole genome sequencing: proof of principle. PMID:26634332
Choosy Wolves? Heterozygote Advantage But No Evidence of MHC-Based Disassortative Mating. PMID:26610365
KIR Genes and Patterns Given by the A Priori Algorithm: Immunity for Haematological Malignancies. PMID:26495028
The killer-cell immunoglobulin-like receptors of macaques. PMID:26284482
KIR and HLA under pressure: evidences of coevolution across worldwide populations. PMID:26099314
Evaluation of host genetics on outcome of tuberculosis infection due to differences in killer immunoglobulin-like receptor gene frequencies and haplotypes. PMID:26077983
Pemphigus is associated with KIR3DL2 expression levels and provides evidence that KIR3DL2 may bind HLA-A3 and A11 in vivo. PMID:25867094
Time to seroconversion in HIV-exposed subjects carrying protective versus non protective KIR3DS1/L1 and HLA-B genotypes. PMID:25330014
Rapid induction of single donor chimerism after double umbilical cord blood transplantation preceded by reduced intensity conditioning: results of the HOVON 106 phase II study. PMID:25107890
Molecular characterization of swine leukocyte antigen class I genes by sequence-based and PCR-SSP method in Guizhou minipigs. PMID:25096513
A hybrid qPCR/SNP array approach allows cost efficient assessment of KIR gene copy numbers in large samples. PMID:24720548
Exome capture from saliva produces high quality genomic and metagenomic data. PMID:24708091
Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment. PMID:24447175
Copy number and nucleotide variation of the LILR family of myelomonocytic cell activating and inhibitory receptors. PMID:24257760
Identification and diversity of killer cell Ig-like receptors in Aotus vociferans, a New World monkey. PMID:24223188
Co-evolution of human leukocyte antigen (HLA) class I ligands with killer-cell immunoglobulin-like receptors (KIR) in a genetically diverse population of sub-Saharan Africans. PMID:24204327
KIR gene content in amerindians indicates influence of demographic factors. PMID:23451080
16(th) IHIW: population global distribution of killer immunoglobulin-like receptor (KIR) and ligands. PMID:23280119
Ligand specificity of Killer cell Immunoglobulin-like Receptors: a brief history of KIR. PMID:23269923
Molecular monitoring of minimal residual disease in two patients with MLL-rearranged acute myeloid leukemia and haploidentical transplantation after relapse. PMID:23211007
Diverse functionality among human NK cell receptors for the C1 epitope of HLA-C: KIR2DS2, KIR2DL2, and KIR2DL3. PMID:23189078
Allele-level haplotype frequencies and pairwise linkage disequilibrium for 14 KIR loci in 506 European-American individuals. PMID:23139747
Role of KIR3DS1 in human diseases. PMID:23125843
KIR2DL5: An Orphan Inhibitory Receptor Displaying Complex Patterns of Polymorphism and Expression. PMID:23060877
Natural selection on marine carnivores elaborated a diverse family of classical MHC class I genes exhibiting haplotypic gene content variation and allelic polymorphism. PMID:23001684
Copy number variation leads to considerable diversity for B but not A haplotypes of the human KIR genes encoding NK cell receptors. PMID:22948769
Nomenclature report on the major histocompatibility complex genes and alleles of Great Ape, Old and New World monkey species. PMID:22526602
Cattle MHC nomenclature: is it possible to assign sequences to discrete class I genes? PMID:22419150
A shared MHC supertype motif emerges by convergent evolution in macaques and mice, but is totally absent in human MHC molecules. PMID:22322672
Review: Immunogenetics of human placentation. PMID:22177321
A community standard for immunogenomic data reporting and analysis: proposal for a STrengthening the REporting of Immunogenomic Studies statement. PMID:21988720
Vaccine-induced antibodies linked to bovine neonatal pancytopenia (BNP) recognize cattle major histocompatibility complex class I (MHC I). PMID:21878124
Conserved KIR allele-level haplotypes are altered by microvariation in individuals with European ancestry. PMID:21796155
Characterization of killer immunoglobulin-like receptor genetics and comprehensive genotyping by pyrosequencing in rhesus macaques. PMID:21645414
KIR gene diversity in Mexican mestizos of San Luis Potosí. PMID:21638211
Screening and confirmatory testing of MHC class I alleles in pig-tailed macaques. PMID:21556859
KIR polymorphisms modulate peptide-dependent binding to an MHC class I ligand with a Bw6 motif. PMID:21423672
Spectrum of MHC class II variability in Darwin's finches and their close relatives. PMID:21273633
Structure/function of human killer cell immunoglobulin-like receptors: lessons from polymorphisms, evolution, crystal structures and mutations. PMID:21214544
Although divergent in residues of the peptide binding site, conserved chimpanzee Patr-AL and polymorphic human HLA-A*02 have overlapping peptide-binding repertoires. PMID:21209280
Interactions of NK cell receptor KIR3DL1*004 with chaperones and conformation-specific antibody reveal a functional folded state as well as predominant intracellular retention. PMID:21115737
Characterization of Mauritian cynomolgus macaque major histocompatibility complex class I haplotypes by high-resolution pyrosequencing. PMID:20882385
Thirty allele-level haplotypes centered around KIR2DL5 define the diversity in an African American population. PMID:20585770
The mosaic of KIR haplotypes in rhesus macaques. PMID:20204612
http://dx.doi.org/10.1093/nar/gku1161

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immunological databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

bioinformatics
metasource: re3data.org
version: re3data.org: Immuno Polymorphism Database; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KK7K last accessed: 2022-11-04

chromosome polymorphism
metasource: re3data.org
version: re3data.org: Immuno Polymorphism Database; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KK7K last accessed: 2022-11-04

genetic code - research
metasource: re3data.org
version: re3data.org: Immuno Polymorphism Database; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KK7K last accessed: 2022-11-04

genetic recombination
metasource: re3data.org
version: re3data.org: Immuno Polymorphism Database; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KK7K last accessed: 2022-11-04

genetics
metasource: re3data.org
version: re3data.org: Immuno Polymorphism Database; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KK7K last accessed: 2022-11-04

immune system
metasource: re3data.org
version: re3data.org: Immuno Polymorphism Database; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KK7K last accessed: 2022-11-04

molecular biology
metasource: re3data.org
version: re3data.org: Immuno Polymorphism Database; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KK7K last accessed: 2022-11-04

immunoproteins, genes and antigens
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

genetic variation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

immunology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

zoology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

immunology bioinformatics chromosome polymorphism genetic code - research genetic recombination genetics immune system molecular biology immunoproteins, genes and antigens genetic variation immunology zoology

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IPD-ESTDAB

IPD-HPA - Human Platelet Antigens

IPD-MHC - Major Histocompatibility Complex Database

IPD-KIR - Killer-cell Immunoglobulin-like Receptors

IPD-NHKIR - Non-Human Killer-cell Immunoglobulin-like Receptors

IPD-IMGT/HLA - Human Leukocyte Antigen Sequence Database

Allele Frequency Net Database

Cellosaurus

IMGT database of human MHC

MaHCO

Molecular Connections Cell Line Ontology

National Collection of Authenticated Cell Cultures

Drosophila polymorphism database

Cell Line Ontology

ImMunoGeneTics Information System

The European Bioinformatics Institute Tools

HyperCLDB

HipSci

Cell Line Integrated Molecular Authentication Database

Immune Epitope Database