AgBase
Names
More detailed information about this field from each metasource.
AgBase
metasource: Fairsharing.org
version: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
agbase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
Names
More detailed information about this field from each metasource.
AgBase
metasource: Fairsharing.orgversion: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
agbase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
Names
More detailed information about this field from each metasource.
AgBase
metasource: Fairsharing.orgversion: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
agbase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.
Description
More detailed information about this field from each metasource.
AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.
metasource: Fairsharing.orgversion: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. We have developed a novel method for facilitating structural annotation of genomes, "expressed protein sequence tags" (ePSTs) and these ePSTs are provided through AgBase. We use controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species. We provide tools designed to assist with the analysis of proteomics data and tools to evaluate experimental datasets using the GO.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models.
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
AgBase provides resources to facilitate modeling of functional genomics data and structural and functional annotation of agriculturally important animal, plant, microbe and parasite genomes. One of seven new tools available at AgBase, GOModeler, supports hypothesis testing from functional genomics data. Moreover, we provide comprehensive training resources (including worked examples and tutorials) via links to Educational Resources at the AgBase website.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
Webpage:
http://www.agbase.msstate.edu/Webpage
More detailed information about this field from each metasource.
http://www.agbase.msstate.edu/
metasource: Fairsharing.orgversion: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
https://agbase.arizona.edu/
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
Licence:
Name: CopyrightsLicence name
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Copyrights
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://agbase.arizona.edu/AgBase_TOU.pdf
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
AgBase: supporting functional modeling in agricultural organisms
PMID: 21075795
metasource: Fairsharing.org
version: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
Publications
More detailed information about this field from each metasource.
AgBase: supporting functional modeling in agricultural organisms
PMID: 21075795
metasource: Fairsharing.org
version: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
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AgBase: supporting functional modeling in agricultural organisms
PubMed citations: 31.
31 articles citing: AgBase: supporting functional modeling in agricultural organisms
Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes. PMID:34442314
Identification of canine platelet proteins separated by differential detergent fractionation for nonelectrophoretic proteomics analyzed by Gene Ontology and pathways analysis. PMID:32670841
Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. PMID:31950972
Proteomic study of the membrane components of signalling cascades of Botrytis cinerea controlled by phosphorylation. PMID:31285484
Gene expression profiles that shape high and low oil content sesames. PMID:31096908
A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domestication. PMID:30616511
Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle. PMID:30344530
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update. PMID:28472432
FOXO1, PXK, PYCARD and SAMD9L are differentially expressed by fibroblast-like cells in equine synovial membrane compared to joint capsule. PMID:28410619
Resources and Recommendations for Using Transcriptomics to Address Grand Challenges in Comparative Biology. PMID:27639274
Bioinformatics resources for pollen. PMID:27271281
Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam. PMID:27142387
Tolerant and Susceptible Sesame Genotypes Reveal Waterlogging Stress Response Patterns. PMID:26934874
Application of Functional Genomics for Bovine Respiratory Disease Diagnostics. PMID:26526746
Putative regulatory factors associated with intramuscular fat content. PMID:26042666
ProteINSIDE to Easily Investigate Proteomics Data from Ruminants: Application to Mine Proteome of Adipose and Muscle Tissues in Bovine Foetuses. PMID:26000831
Biochemical functional predictions for protein structures of unknown or uncertain function. PMID:25848497
Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress. PMID:25358745
Transcriptomic dissection of the rice-Burkholderia glumae interaction. PMID:25183458
Computational prediction of disease microRNAs in domestic animals. PMID:24970281
The reference transcriptome of the adult female biting midge (Culicoides sonorensis) and differential gene expression profiling during teneral, blood, and sucrose feeding conditions. PMID:24866149
The spliced leader trans-splicing mechanism in different organisms: molecular details and possible biological roles. PMID:24130571
Ultrasonic incisions produce less inflammatory mediator response during early healing than electrosurgical incisions. PMID:24058457
The plant ontology as a tool for comparative plant anatomy and genomic analyses. PMID:23220694
Developing a biocuration workflow for AgBase, a non-model organism database. PMID:23160411
Cross-Ontology multi-level association rule mining in the Gene Ontology. PMID:23071802
Transcriptome-based differentiation of closely-related Miscanthus lines. PMID:22253803
The UniProt-GO Annotation database in 2011. PMID:22123736
Genetic dissection of the biotic stress response using a genome-scale gene network for rice. PMID:22042862
g:Profiler--a web server for functional interpretation of gene lists (2011 update). PMID:21646343
Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. PMID:21441235
Tags:
Tags
More detailed information about this field from each metasource.
animal research
metasource: Fairsharing.org
version: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
agricultural plants
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
animals
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
microbes
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
parasites
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
post-genome
metasource: re3data.org
version: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
zoology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
Tags
More detailed information about this field from each metasource.
animal research
metasource: Fairsharing.orgversion: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: AgBase; AgBase; DOI: https://doi.org/10.25504/FAIRsharing.kn4ycg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
agricultural plants
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
animals
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
microbes
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
parasites
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
post-genome
metasource: re3data.orgversion: re3data.org: AgBase; editing status 2022-08-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3P772 last accessed: 2022-11-04
zoology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:54.531205
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:54.531205
animal research gene human and other vertebrate genomes model organisms plant plant agricultural plants animals microbes parasites post-genome zoology plant biology model organisms gene expression
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