R3Q022 last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

mouse_atlas
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

Other names: mouse_atlas

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Webpage:

http://www.mouseatlas.org/mouseatlas_index_html

Licence:

Name: CC
URL: https://creativecommons.org/licenses/by/2.5/

Publications:

Publications
More detailed information about this field from each metasource.

A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells
PMID: 16352711
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells PubMed citations: 60.

60 articles citing: A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells

Transcriptional atlas analysis from multiple tissues reveals the expression specificity patterns in beef cattle. PMID:35351103
Role of Claudins in Renal Branching Morphogenesis. PMID:32975899
A high resolution atlas of gene expression in the domestic sheep (Ovis aries). PMID:28915238
De Novo and Rare Variants at Multiple Loci Support the Oligogenic Origins of Atrioventricular Septal Heart Defects. PMID:27058611
The old and new face of craniofacial research: How animal models inform human craniofacial genetic and clinical data. PMID:26808208
Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development. PMID:26204903
Claudin-7, -16, and -19 during mouse kidney development. PMID:25610756
MitProNet: A knowledgebase and analysis platform of proteome, interactome and diseases for mammalian mitochondria. PMID:25347823
Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain. PMID:25145340
The predictive power of brain mRNA mappings for in vivo protein density: a positron emission tomography correlation study. PMID:24496175
Integrative proteomic and transcriptomic analyses reveal multiple post-transcriptional regulatory mechanisms of mouse spermatogenesis. PMID:23325766
Identification and analysis of murine pancreatic islet enhancers. PMID:23238790
Tissue-specific functional networks for prioritizing phenotype and disease genes. PMID:23028291
Rare copy number variants contribute to congenital left-sided heart disease. PMID:22969434
"Guilt by association" is the exception rather than the rule in gene networks. PMID:22479173
Tissue-specific alternative polyadenylation at the imprinted gene Mest regulates allelic usage at Copg2. PMID:22053079
piRNA profiling during specific stages of mouse spermatogenesis. PMID:21602304
Serial analysis of gene expression (SAGE) in normal human trabecular meshwork. PMID:21528004
Functional genomics complements quantitative genetics in identifying disease-gene associations. PMID:21085640
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation. PMID:20961407
LNCaP Atlas: gene expression associated with in vivo progression to castration-recurrent prostate cancer. PMID:20868494
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. PMID:20551221
Expression of two novel transcripts in the mouse definitive endoderm. PMID:20153842
Integrative approaches to the prediction of protein functions based on the feature selection. PMID:20043848
Genomic analysis distinguishes phases of early development of the mouse atrio-ventricular canal. PMID:19952280
Expression analysis of novel striatal-enriched genes in Huntington disease. PMID:19934114
Identification of novel androgen-responsive genes by sequencing of LongSAGE libraries. PMID:19832994
Next-generation tag sequencing for cancer gene expression profiling. PMID:19541910
Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. PMID:19372383
ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. PMID:19111532
Noncoding RNA in development. PMID:18839252
A genomewide functional network for the laboratory mouse. PMID:18818725
A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome. PMID:18796152
A seriation approach for visualization-driven discovery of co-expression patterns in Serial Analysis of Gene Expression (SAGE) data. PMID:18787709
Expression of Groucho/TLE proteins during pancreas development. PMID:18778483
Identification and characterization of novel human tissue-specific RFX transcription factors. PMID:18673564
Identification of a set of genes showing regionally enriched expression in the mouse brain. PMID:18625066
An en masse phenotype and function prediction system for Mus musculus. PMID:18613952
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. PMID:18613946
Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing. PMID:18611952
Identification of transcripts with enriched expression in the developing and adult pancreas. PMID:18554416
Exploiting orthologue diversity for systematic detection of gain-of-function phenotypes. PMID:18510758
Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data. PMID:18234097
Sharing and reusing gene expression profiling data in neuroscience. PMID:17917127
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. PMID:17850180
antiCODE: a natural sense-antisense transcripts database. PMID:17760969
A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE). PMID:17683524
Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD. PMID:17623072
LongSAGE profiling of nine human embryonic stem cell lines. PMID:17570852
Unexpected observations after mapping LongSAGE tags to the human genome. PMID:17504516
Beyond the 3' end: experimental validation of extended transcript isoforms. PMID:17339231
NeuroTerrain--a client-server system for browsing 3D biomedical image data sets. PMID:17280615
DiscoverySpace: an interactive data analysis application. PMID:17210078
Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines. PMID:17135571
SAGE detects microRNA precursors. PMID:17090314
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. PMID:17010196
The complexity of the mammalian transcriptome. PMID:16857706
Sequence biases in large scale gene expression profiling data. PMID:16840527
Genome Network and FANTOM3: assessing the complexity of the transcriptome. PMID:16683037
SAGE2Splice: unmapped SAGE tags reveal novel splice junctions. PMID:16683015

Tags:

Tags
More detailed information about this field from each metasource.

dna
metasource: re3data.org
version: re3data.org: Mouse Atlas of Gene Expression; editing status 2022-06-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Q022 last accessed: 2022-11-04

expressed sequence tag (est)
metasource: re3data.org
version: re3data.org: Mouse Atlas of Gene Expression; editing status 2022-06-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Q022 last accessed: 2022-11-04

sage
metasource: re3data.org
version: re3data.org: Mouse Atlas of Gene Expression; editing status 2022-06-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Q022 last accessed: 2022-11-04

cancer
metasource: re3data.org
version: re3data.org: Mouse Atlas of Gene Expression; editing status 2022-06-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Q022 last accessed: 2022-11-04

mammals
metasource: re3data.org
version: re3data.org: Mouse Atlas of Gene Expression; editing status 2022-06-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Q022 last accessed: 2022-11-04

tumour
metasource: re3data.org
version: re3data.org: Mouse Atlas of Gene Expression; editing status 2022-06-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Q022 last accessed: 2022-11-04

gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

zoology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

gene regulation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

dna expressed sequence tag (est) sage cancer mammals tumour gene expression gene transcripts zoology gene regulation gene and protein families

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