Bovine Genome Database

Names

More detailed information about this field from each metasource. ×

Bovine Genome Database

metasource: Fairsharing.org
version: None

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BGD

metasource: Fairsharing.org
version: None

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Bovine Genome

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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The Bovine Genome Database (BGD)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

---

bgd

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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Other names: BGD, Bovine Genome, The Bovine Genome Database (BGD), bgd

The Bovine Genome Database project is developed to support the efforts of bovine genomics researchers by providing data mining, genome navigation and annotation tools for the bovine reference genome based on the hereford cow, L1 Dominette 01449.

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

Bovine Genome Database: new tools for gleaning function from the Bos taurus genome
PMID: 26481361

metasource: Fairsharing.org
version: None

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Bovine Genome Database: integrated tools for genome annotation and discovery
PMID: 21123190

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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Bovine Genome Database: new annotation tools for a new reference genome
PMID: 31647100

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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http://nar.oxfordjournals.org/content/39/suppl_1/D830

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• Bovine Genome Database: new tools for gleaning function from the Bos taurus genome PubMed citations: 45.

  45 articles citing: Bovine Genome Database: new tools for gleaning function from the Bos taurus genome

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  The Agricultural Genome to Phenome Initiative (AG2PI): creating a shared vision across crop and livestock research communities. PMID:34980221

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  The Role of microRNAs in the Mammary Gland Development, Health, and Function of Cattle, Goats, and Sheep. PMID:34940759

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  Discovering of Genomic Variations Associated to Growth Traits by GWAS in Braunvieh Cattle. PMID:34828272

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  iSheep: an Integrated Resource for Sheep Genome, Variant and Phenotype. PMID:34490043

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  β-Lactoglobulin and Glycodelin: Two Sides of the Same Coin? PMID:34093238

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  Single nucleotide polymorphisms affect miRNA target prediction in bovine. PMID:33882076

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  Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle 'in vitro' experimentally infected macrophages. PMID:33678157

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  Genomic Prediction Based on SNP Functional Annotation Using Imputed Whole-Genome Sequence Data in Korean Hanwoo Cattle. PMID:33552124

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  Metagenomic Quantification of Genes with Internal Standards. PMID:33531401

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  Improvement of Disease Resistance in Livestock: Application of Immunogenomics and CRISPR/Cas9 Technology. PMID:33260762

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  Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313

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  Molecular Dissection of the Antibody Response: Opportunities and Needs for Application in Cattle. PMID:32595642

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  BGVD: An Integrated Database for Bovine Sequencing Variations and Selective Signatures. PMID:32540200

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  Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome. PMID:32537769

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  A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. PMID:32473013

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  A Gene-Set Enrichment and Protein-Protein Interaction Network-Based GWAS with Regulatory SNPs Identifies Candidate Genes and Pathways Associated with Carcass Traits in Hanwoo Cattle. PMID:32188084

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  Transcriptome Analysis of The Inflammatory Responses of Bovine Mammary Epithelial Cells: Exploring Immunomodulatory Target Genes for Bovine Mastitis. PMID:32182886

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  An Evolutionary Insertion in the Mxra8 Receptor-Binding Site Confers Resistance to Alphavirus Infection and Pathogenesis. PMID:32075743

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  Survey of mitochondrial sequences integrated into the bovine nuclear genome. PMID:32034268

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  Whole genome detection of recent selection signatures in Sarabi cattle: a unique Iranian taurine breed. PMID:31808064

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  Bovine Genome Database: new annotation tools for a new reference genome. PMID:31647100

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  A Broad Role for Cysteines in Bovine Antibody Diversity. PMID:31619454

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  Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation. PMID:31513639

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  The Caribou (Rangifer tarandus) Genome. PMID:31319535

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  Transcriptome Analyses Reveal Effects of Vitamin C-Treated Donor Cells on Cloned Bovine Embryo Development. PMID:31142052

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  Bovine leukemia virus proviral load is more strongly associated with bovine major histocompatibility complex class II DRB3 polymorphism than with DQA1 polymorphism in Holstein cow in Japan. PMID:31096993

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  Physiological profile of undifferentiated bovine blastocyst-derived trophoblasts. PMID:30952696

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  Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle. PMID:30836944

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  In silico identification of conserved miRNAs and their selective target gene prediction in indicine (Bos indicus) cattle. PMID:30365525

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  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679

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  Functional Partitioning of Genomic Variance and Genome-Wide Association Study for Carcass Traits in Korean Hanwoo Cattle Using Imputed Sequence Level SNP Data. PMID:29988410

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  A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds. PMID:29965995

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  Comparative transcriptome analysis to investigate the potential role of miRNAs in milk protein/fat quality. PMID:29674689

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  Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle. PMID:29636028

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  Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data. PMID:29618048

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  Weighting genomic and genealogical information for genetic parameter estimation and breeding value prediction in tropical beef cattle. PMID:29385460

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  Constructing a comprehensive gene co-expression based interactome in Bos taurus. PMID:29226034

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  Changes in circulating microRNA levels can be identified as early as day 8 of pregnancy in cattle. PMID:28380001

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  Blubber transcriptome response to acute stress axis activation involves transient changes in adipogenesis and lipolysis in a fasting-adapted marine mammal. PMID:28186107

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  Breed and adaptive response modulate bovine peripheral blood cells' transcriptome. PMID:28149510

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  Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis. PMID:28045068

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  Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes. PMID:27892494

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  Comparison of gene-based rare variant association mapping methods for quantitative traits in a bovine population with complex familial relationships. PMID:27534618

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  Circulating microRNA Profiles during the Bovine Oestrous Cycle. PMID:27340826

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  Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing. PMID:27245094
• Bovine Genome Database: integrated tools for genome annotation and discovery PubMed citations: 16.

  16 articles citing: Bovine Genome Database: integrated tools for genome annotation and discovery

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  Runs of Homozygosity and Quantitative Trait Locus/Association for Semen Parameters in Selected Chinese and South African Beef Cattle. PMID:35739882

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  Chromosomal Aberrations in Cattle. PMID:34573313

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  BGVD: An Integrated Database for Bovine Sequencing Variations and Selective Signatures. PMID:32540200

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  Bovine Genome Database: new annotation tools for a new reference genome. PMID:31647100

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  Immune signatures of pathogenesis in the peritoneal compartment during early infection of sheep with Fasciola hepatica. PMID:28584245

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  Application of Functional Genomics for Bovine Respiratory Disease Diagnostics. PMID:26526746

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  Bovine Genome Database: new tools for gleaning function from the Bos taurus genome. PMID:26481361

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  Genome-wide association study for female fertility in Nordic Red cattle. PMID:26369327

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  Large animal models of rare genetic disorders: sheep as phenotypically relevant models of human genetic disease. PMID:26329332

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  Vertebrate pheromones and other semiochemicals: the potential for accommodating complexity in signalling by volatile compounds for vertebrate management. PMID:25109967

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  Characterisation and expression profile of the bovine cathelicidin gene repertoire in mammary tissue. PMID:24524771

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  Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism. PMID:23372424

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  Community gene annotation in practice. PMID:22434843

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  Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes. PMID:22182502

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  Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle. PMID:22129081

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  Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping. PMID:22082336
• Bovine Genome Database: new annotation tools for a new reference genome PubMed citations: 10.

  10 articles citing: Bovine Genome Database: new annotation tools for a new reference genome

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  Transcriptional atlas analysis from multiple tissues reveals the expression specificity patterns in beef cattle. PMID:35351103

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  Genomic Analysis, Progress and Future Perspectives in Dairy Cattle Selection: A Review. PMID:33668747

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  Regulation of gene expression in the bovine blastocyst by colony-stimulating factor 2 is disrupted by CRISPR/Cas9-mediated deletion of CSF2RA. PMID:33524138

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  Coronavirus genomes carry the signatures of their habitats. PMID:33351847

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  Frameshift Variant in Novel Adenosine-A1-Receptor Homolog Associated With Bovine Spastic Syndrome/Late-Onset Bovine Spastic Paresis in Holstein Sires. PMID:33329738

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  Gene co-expression and alternative splicing analysis of key metabolic tissues to unravel the regulatory signatures of fatty acid composition in cattle. PMID:32931715

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  Evolutionary-driven C-MYC gene expression in mammalian fibroblasts. PMID:32632086

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  Molecular Dissection of the Antibody Response: Opportunities and Needs for Application in Cattle. PMID:32595642

  ---

  Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome. PMID:32537769

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  RNA-Seq Analysis Identifies Differentially Expressed Genes Insubcutaneous Adipose Tissuein Qaidamford Cattle, Cattle-Yak, and Angus Cattle. PMID:31816988
• http://nar.oxfordjournals.org/content/39/suppl_1/D830

Tags:

Tags

More detailed information about this field from each metasource. ×

genome

metasource: Fairsharing.org
version: None

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genome annotation

metasource: Fairsharing.org
version: None

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genome visualization

metasource: Fairsharing.org
version: None

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human and other vertebrate genomes

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

model organisms, comparative genomics

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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dna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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zoology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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genetic variation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:45.088559

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genome genome annotation genome visualization human and other vertebrate genomes model organisms gene transcripts dna zoology gene expression genetic variation