TFcheckpoint

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TFcheckpoint

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:50.796008

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tfcheckpoint

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:50.796008

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Other names: tfcheckpoint

Curated compendium of specific DNA-binding RNA polymerase II transcription factors.

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Publications

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TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors
PMID: 23933972

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:50.796008

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• TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors PubMed citations: 44.

  44 articles citing: TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors

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  Placental genomics mediates genetic associations with complex health traits and disease. PMID:35121757

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  Systems biology and machine learning approaches identify drug targets in diabetic nephropathy. PMID:34873190

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  Significant transcriptomic changes are associated with the inhibitory effects of 5-aza-2-deoxycytidine during adipogenic differentiation of MG-63 cells. PMID:34867036

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  ImmReg: the regulon atlas of immune-related pathways across cancer types. PMID:34755873

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  Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues. PMID:34094972

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  Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories. PMID:34011578

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  Discovering key transcriptomic regulators in pancreatic ductal adenocarcinoma using Dirichlet process Gaussian mixture model. PMID:33846515

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  Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms. PMID:33828580

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  Novel Lesional Transcriptional Signature Separates Atherosclerosis With and Without Diabetes in Yorkshire Swine and Humans. PMID:33567868

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  Nicotine promotes breast cancer metastasis by stimulating N2 neutrophils and generating pre-metastatic niche in lung. PMID:33473115

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  Epigenetic landscape of pancreatic neuroendocrine tumours reveals distinct cells of origin and means of tumour progression. PMID:33288854

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  Differentially Expressed mRNAs and Their Long Noncoding RNA Regulatory Network with Helicobacter pylori-Associated Diseases including Atrophic Gastritis and Gastric Cancer. PMID:33282942

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  HAHmiR.DB: a server platform for high-altitude human miRNA-gene coregulatory networks and associated regulatory circuits. PMID:33259604

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  nSARS-Cov-2, pulmonary edema and thrombosis: possible molecular insights using miRNA-gene circuits in regulatory networks. PMID:33209992

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  Significant transcriptomic changes are associated with differentiation of bone marrow-derived mesenchymal stem cells into neural progenitor-like cells in the presence of bFGF and EGF. PMID:33133516

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  The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization. PMID:33060136

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  Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples. PMID:32597303

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  MyomirDB: A unified database and server platform for muscle atrophy myomiRs, coregulatory networks and regulons. PMID:32451429

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  3'-UTR Shortening Contributes to Subtype-Specific Cancer Growth by Breaking Stable ceRNA Crosstalk of Housekeeping Genes. PMID:32411683

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  Single-cell expression and Mendelian randomization analyses identify blood genes associated with lifespan and chronic diseases. PMID:32358504

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  Comparative Transcriptomic Analyses of Developing Melanocortin Neurons Reveal New Regulators for the Anorexigenic Neuron Identity. PMID:32213554

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  Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data. PMID:32197580

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  Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly. PMID:32161263

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  Identification of Key Transcription Factors AP-1 and AP-1-Dependent miRNAs Forming a Co-Regulatory Network Controlling PTEN in Liver Ischemia/Reperfusion Injury. PMID:31781649

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  Deep Sequencing of Somatosensory Neurons Reveals Molecular Determinants of Intrinsic Physiological Properties. PMID:31248728

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  A catalog of single nucleotide changes distinguishing modern humans from archaic hominins. PMID:31186485

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  Laser capture microdissection of human pancreatic islets reveals novel eQTLs associated with type 2 diabetes. PMID:30956117

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  Characterization of the European Sea Bass (Dicentrarchus labrax) Gonadal Transcriptome During Sexual Development. PMID:30919121

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  Single cell RNA sequencing identifies TGFβ as a key regenerative cue following LPS-induced lung injury. PMID:30913038

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  Putative contributions of the sex chromosome proteins SOX3 and SRY to neurodevelopmental disorders. PMID:30537354

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  Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer. PMID:30323202

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  Construction and analysis of mRNA, miRNA, lncRNA, and TF regulatory networks reveal the key genes associated with prostate cancer. PMID:30138363

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  Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells. PMID:30086151

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  Species-Specific Changes in a Primate Transcription Factor Network Provide Insights into the Molecular Evolution of the Primate Prefrontal Cortex. PMID:30059966

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  A validation and extended description of the Lund taxonomy for urothelial carcinoma using the TCGA cohort. PMID:29487377

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  Transcriptomic correlates of neuron electrophysiological diversity. PMID:29069078

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  In silico design of context-responsive mammalian promoters with user-defined functionality. PMID:28977454

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  Transcriptome of neonatal preBötzinger complex neurones in Dbx1 reporter mice. PMID:28819234

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  TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions. PMID:27789689

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  A Single-Cell Transcriptome Atlas of the Human Pancreas. PMID:27693023

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  Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. PMID:27270715

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  Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage. PMID:26658111

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  TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability. PMID:26307407

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  Finding gene regulatory network candidates using the gene expression knowledge base. PMID:25490885

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human biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:50.796008

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zoology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:50.796008

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transcription factors and regulatory sites

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:50.796008

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human zoology transcription factors and regulatory sites