RNAcentral
Names
More detailed information about this field from each metasource.
RNAcentral
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
rnacentral
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
Names
More detailed information about this field from each metasource.
RNAcentral
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
rnacentral
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:39.141159
Names
More detailed information about this field from each metasource.
RNAcentral
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
rnacentral
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:39.141159
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of databases representing a broad range of organisms and RNA types.
Description
More detailed information about this field from each metasource.
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of databases representing a broad range of organisms and RNA types.
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Data for non-protein coding RNA genes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
RNAcentral is a comprehensive database of non-coding RNA sequences that represents all types of ncRNA from a broad range of organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:39.141159
Webpage:
https://rnacentral.orgWebpage
More detailed information about this field from each metasource.
https://rnacentral.org
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://rnacentral.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://rnacentral.org
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:39.141159
Licence:
Name: EMBL-EBI Terms of UseLicence name
More detailed information about this field from each metasource.
EMBL-EBI Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
More detailed information about this field from each metasource.
http://www.ebi.ac.uk/about/terms-of-use
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
RNAcentral: a comprehensive database of non-coding RNA sequences
PMID: 27794554
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
RNAcentral: a hub of information for non-coding RNA sequences
PMID: 30395267
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
RNAcentral: an international database of ncRNA sequences
PMID: 25352543
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
http://dx.doi.org/10.1093/nar/gky1034
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
RNAcentral: a comprehensive database of non-coding RNA sequences
PMID: 27794554
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
RNAcentral: a hub of information for non-coding RNA sequences
PMID: 30395267
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
RNAcentral: an international database of ncRNA sequences
PMID: 25352543
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
http://dx.doi.org/10.1093/nar/gky1034
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
-
RNAcentral: a comprehensive database of non-coding RNA sequences
PubMed citations: 94.
94 articles citing: RNAcentral: a comprehensive database of non-coding RNA sequences
Are miRNAs Dynamic Biomarkers in Keratoconus? A Review of the Literature. PMID:35456395
Developing Community Resources for Nucleic Acid Structures. PMID:35455031
Thoughts on how to think (and talk) about RNA structure. PMID:35439059
Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway. PMID:35438544
SwissBioPics-an interactive library of cell images for the visualization of subcellular location data. PMID:35411389
Variation in the co-expression profile highlights a loss of miRNA-mRNA regulation in multiple cancer types. PMID:35387279
Description of the female, nymph and larva and mitochondrial genome, and redescription of the male of Ixodes barkeri Barker, 2019 (Acari: Ixodidae), from the short-beaked echidna, Tachyglossus aculeatus, with a consideration of the most suitable subgenus for this tick. PMID:35365195
Probing RNA structures and functions by solvent accessibility: an overview from experimental and computational perspectives. PMID:35348613
Towards SINEUP-based therapeutics: Design of an in vitro synthesized SINEUP RNA. PMID:35228902
Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning. PMID:35211670
Weight Change Alters the Small RNA Profile of Urinary Extracellular Vesicles in Obesity. PMID:35008090
Altered microRNAs in C3H10T1/2 cells induced by p.E95K mutant IHH signaling. PMID:34922634
Multiomics Landscape Uncovers the Molecular Mechanism of the Malignant Evolution of Lung Adenocarcinoma Cells to Chronic Low Dose Cadmium Exposure. PMID:34858801
A Survey of Spontaneous Antibiotic-Resistant Mutants of the Halophilic, Thermophilic Bacterium Rhodothermus marinus. PMID:34827322
PIWI interacting RNAs perspectives: a new avenues in future cancer investigations. PMID:34723746
Integration of Epigenetic Mechanisms into Non-Genotoxic Carcinogenicity Hazard Assessment: Focus on DNA Methylation and Histone Modifications. PMID:34681626
Small Non-coding RNA Expression Following Respiratory Syncytial Virus or Measles Virus Infection of Neuronal Cells. PMID:34539595
The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation. PMID:34526021
Multi-Transcript Level Profiling Revealed Distinct mRNA, miRNA, and tRNA-Derived Fragment Bio-Signatures for Coping Behavior Linked Haplotypes in HPA Axis and Limbic System. PMID:34490028
Review of machine learning methods for RNA secondary structure prediction. PMID:34437528
A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis. PMID:34429124
MiREDiBase, a manually curated database of validated and putative editing events in microRNAs. PMID:34349127
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome. PMID:34187812
The architecture of the SARS-CoV-2 RNA genome inside virion. PMID:34168138
Suppression of circulating AP001429.1 long non-coding RNA in obese patients with breast cancer. PMID:33986869
Endothelial Exosome Plays a Functional Role during Rickettsial Infection. PMID:33975935
Identification of the conserved long non-coding RNAs in myogenesis. PMID:33971818
Comparative Transcriptomes of the Body Wall of Wild and Farmed Sea Cucumber Isostichopus badionotus. PMID:33918680
MicroRNA expression profile in bovine mammary gland parenchyma infected by coagulase-positive or coagulase-negative staphylococci. PMID:33676576
NK/ILC1 cells mediate neuroinflammation and brain pathology following congenital CMV infection. PMID:33630019
Role of Transposable Elements in Gene Regulation in the Human Genome. PMID:33557056
Identification of SNPs Associated with Somatic Cell Score in Candidate Genes in Italian Holstein Friesian Bulls. PMID:33535694
IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner. PMID:33522913
LazySampling and LinearSampling: Fast Stochastic Sampling of RNA Secondary Structure with Applications to SARS-CoV-2. PMID:33398265
Hepatocyte-specific IL11 cis-signaling drives lipotoxicity and underlies the transition from NAFLD to NASH. PMID:33397952
HAHmiR.DB: a server platform for high-altitude human miRNA-gene coregulatory networks and associated regulatory circuits. PMID:33259604
RMVar: an updated database of functional variants involved in RNA modifications. PMID:33021671
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities. PMID:32657379
Elongating maize root: zone-specific combinations of polysaccharides from type I and type II primary cell walls. PMID:32616810
mirnaQC: a webserver for comparative quality control of miRNA-seq data. PMID:32484556
PIWIL-2 and piRNAs are regularly expressed in epithelia of the skin and their expression is related to differentiation. PMID:32166374
Differential expression analysis comparing EBV uninfected to infected human cell lines identifies induced non-micro small non-coding RNAs. PMID:32154466
Engineering salinity tolerance in plants: progress and prospects. PMID:32152761
Long noncoding RNAs: new insights in modulating mammalian spermatogenesis. PMID:32128162
Postprandial transfer of colostral extracellular vesicles and their protein and miRNA cargo in neonatal calves. PMID:32109241
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. PMID:32034905
Reducing the structure bias of RNA-Seq reveals a large number of non-annotated non-coding RNA. PMID:31980822
LncDisAP: a computation model for LncRNA-disease association prediction based on multiple biological datasets. PMID:31787106
RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning. PMID:31776342
Assessment of methods for serum extracellular vesicle small RNA sequencing to support biomarker development. PMID:31741724
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search. PMID:31510672
Deep sequencing of small non-coding RNA highlights brain-specific expression patterns and RNA cleavage. PMID:31432767
Widespread Translational Control of Fibrosis in the Human Heart by RNA-Binding Proteins. PMID:31284728
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication. PMID:31249862
Comparing small urinary extracellular vesicle purification methods with a view to RNA sequencing-Enabling robust and non-invasive biomarker research. PMID:31194192
Heat shock protein DNAJA1 stabilizes PIWI proteins to support regeneration and homeostasis of planarian Schmidtea mediterranea. PMID:31076507
Nitric oxide-dependent regulation of sweet pepper fruit ripening. PMID:31046097
The cellular landscape of mid-size noncoding RNA. PMID:30843375
metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data. PMID:30821316
Intrusive Growth of Phloem Fibers in Flax Stem: Integrated Analysis of miRNA and mRNA Expression Profiles. PMID:30791461
Methods for Studying Gut Microbiota: A Primer for Physicians. PMID:30774267
Genomic and transcriptional Profiling of tumor infiltrated CD8+ T cells revealed functional heterogeneity of antitumor immunity in hepatocellular carcinoma. PMID:30713796
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products. PMID:30668832
Circular RNA profiling identifies circADAMTS13 as a miR-484 sponge which suppresses cell proliferation in hepatocellular carcinoma. PMID:30537115
miRBase: from microRNA sequences to function. PMID:30423142
IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing maps with rejection. PMID:30423081
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
LNCipedia 5: towards a reference set of human long non-coding RNAs. PMID:30371849
piRBase: a comprehensive database of piRNA sequences. PMID:30371818
Arena-Idb: a platform to build human non-coding RNA interaction networks. PMID:30367585
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes. PMID:30357405
liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies. PMID:30357370
LncBook: a curated knowledgebase of human long non-coding RNAs. PMID:30329098
The ensemble diversity of non-coding RNA structure is lower than random sequence. PMID:30175283
Transcriptional regulation of osmotic stress tolerance in wheat (Triticum aestivum L.). PMID:30109563
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Trends in the development of miRNA bioinformatics tools. PMID:29982332
LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs. PMID:29961817
Non-Coding RNA Analysis Using the Rfam Database. PMID:29927072
Regulatory variants: from detection to predicting impact. PMID:29893792
Towards a complete map of the human long non-coding RNA transcriptome. PMID:29795125
Palladin Is a Neuron-Specific Translational Target of mTOR Signaling That Regulates Axon Morphogenesis. PMID:29712777
Examining the Genetic Background of Porcine Muscle Growth and Development Based on Transcriptome and miRNAome Data. PMID:29659518
Present Scenario of Long Non-Coding RNAs in Plants. PMID:29657289
Natural Antisense Transcripts: Molecular Mechanisms and Implications in Breast Cancers. PMID:29301303
Genetic variation associated with healthy traits and environmental conditions in Vaccinium vitis-idaea. PMID:29291734
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
The European Bioinformatics Institute in 2017: data coordination and integration. PMID:29186510
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. PMID:29112718
Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance. PMID:28951953
The yeast noncoding RNA interaction network. PMID:28701522
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604 -
RNAcentral: a hub of information for non-coding RNA sequences
PubMed citations: 61.
61 articles citing: RNAcentral: a hub of information for non-coding RNA sequences
Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea. PMID:35695572
Comprehensive Characterization of Platelet-Enriched MicroRNAs as Biomarkers of Platelet Activation. PMID:35455934
Profiling Blood Serum Extracellular Vesicles in Plaque Psoriasis and Psoriatic Arthritis Patients Reveals Potential Disease Biomarkers. PMID:35409365
CRISPRs in the human genome are differentially expressed between malignant and normal adjacent to tumor tissue. PMID:35396392
JaponicusDB: rapid deployment of a model organism database for an emerging model species. PMID:35380656
Complete Genome Sequence of Stenotrophomonas maltophilia Myophage Marzo. PMID:35225674
Exosomal miRNAs from Prostate Cancer Impair Osteoblast Function in Mice. PMID:35163219
A MicroRNA Next-Generation-Sequencing Discovery Assay (miND) for Genome-Scale Analysis and Absolute Quantitation of Circulating MicroRNA Biomarkers. PMID:35163149
Integrated analysis of long non-coding RNAs and mRNAs reveals the regulatory network of maize seedling root responding to salt stress. PMID:35026983
The Genome of the "Sea Vomit" Didemnum vexillum. PMID:34947908
RNAPhaSep: a resource of RNAs undergoing phase separation. PMID:34718740
High frequency of intron retention and clustered H3K4me3-marked nucleosomes in short first introns of human long non-coding RNAs. PMID:34579770
Identification and Characterization of Verticillium nonalfalfae-Responsive MicroRNAs in the Roots of Resistant and Susceptible Hop Cultivars. PMID:34579416
SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients. PMID:34570216
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. PMID:34551440
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions. PMID:34549988
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes. PMID:34417604
The Arabidopsis 2'-O-Ribose-Methylation and Pseudouridylation Landscape of rRNA in Comparison to Human and Yeast. PMID:34381476
PlasmiR: A Manual Collection of Circulating microRNAs of Prognostic and Diagnostic Value. PMID:34359584
Hibernation-Promoting Factor Sequesters Staphylococcus aureus Ribosomes to Antagonize RNase R-Mediated Nucleolytic Degradation. PMID:34253058
miRNAs generated from Meg3-Mirg locus are downregulated during aging. PMID:34156971
FGGA-lnc: automatic gene ontology annotation of lncRNA sequences based on secondary structures. PMID:34123354
R2DT is a framework for predicting and visualising RNA secondary structure using templates. PMID:34108470
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs. PMID:33980133
Extracellular Vesicles from Human Adipose-Derived Mesenchymal Stem Cells: A Review of Common Cargos. PMID:33904115
MicroRNAs and Long Non-Coding RNAs as Potential Candidates to Target Specific Motifs of SARS-CoV-2. PMID:33670580
Mapping rRNA 2'-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants. PMID:33596769
HIV-1 Infection Transcriptomics: Meta-Analysis of CD4+ T Cells Gene Expression Profiles. PMID:33557210
Long Non-Coding RNA FENDRR: Gene Structure, Expression, and Biological Relevance. PMID:33513839
Sieving RNA 3D Structures with SHAPE and Evaluating Mechanisms Driving Sequence-Dependent Reactivity Bias. PMID:33497570
Pan-cancer analysis of transcripts encoding novel open-reading frames (nORFs) and their potential biological functions. PMID:33495453
MicroRNA profiling of the pig periaqueductal grey (PAG) region reveals candidates potentially related to sex-dependent differences. PMID:33451362
Next-generation sequencing analysis of circulating micro-RNA expression in response to parabolic flight as a spaceflight analogue. PMID:33298968
Our emerging understanding of the roles of long non-coding RNAs in normal liver function, disease, and malignancy. PMID:33294829
Characterization and validation of long noncoding RNAs as new candidates in prostate cancer. PMID:33292248
DNMT3A Haploinsufficiency Results in Behavioral Deficits and Global Epigenomic Dysregulation Shared across Neurodevelopmental Disorders. PMID:33238114
FlyBase: updates to the Drosophila melanogaster knowledge base. PMID:33219682
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. PMID:33211869
Genenames.org: the HGNC and VGNC resources in 2021. PMID:33152070
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
Reanalysis of Gene Expression Profiles of CD4+ T Cells Treated with HIV-1 Latency Reversal Agents. PMID:33007800
Comprehensive Survey and Comparative Assessment of RNA-Binding Residue Predictions with Analysis by RNA Type. PMID:32961749
Whole transcriptome approach to evaluate the effect of aluminium hydroxide in ovine encephalon. PMID:32943671
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Cryo-electron microscopy visualization of a large insertion in the 5S ribosomal RNA of the extremely halophilic archaeon Halococcus morrhuae. PMID:32865340
The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG). PMID:32585032
Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data. PMID:32417785
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID:32374865
Formation of human long intergenic non-coding RNA genes, pseudogenes, and protein genes: Ancestral sequences are key players. PMID:32214344
ncRPheno: a comprehensive database platform for identification and validation of disease related noncoding RNAs. PMID:32122231
A guide to naming human non-coding RNA genes. PMID:32090359
Initial Virome Characterization of the Common Cnidarian Lab Model Nematostella vectensis. PMID:32075325
Mouse Trmt2B protein is a dual specific mitochondrial metyltransferase responsible for m5U formation in both tRNA and rRNA. PMID:31736397
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. PMID:31732741
SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update. PMID:31665520
snoDB: an interactive database of human snoRNA sequences, abundance and interactions. PMID:31598696
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. PMID:31504201
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175
Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data. PMID:30501127
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657 -
RNAcentral: an international database of ncRNA sequences
PubMed citations: 52.
52 articles citing: RNAcentral: an international database of ncRNA sequences
The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders. PMID:35682796
A cancer-associated RNA polymerase III identity drives robust transcription and expression of snaR-A noncoding RNA. PMID:35637192
Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects. PMID:35524574
DBHR: a collection of databases relevant to human research. PMID:35251694
Pairing a high-resolution statistical potential with a nucleobase-centric sampling algorithm for improving RNA model refinement. PMID:33986288
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Radiation Exposure of Peripheral Mononuclear Blood Cells Alters the Composition and Function of Secreted Extracellular Vesicles. PMID:32230970
Molecular bases for drought tolerance in common vetch: designing new molecular breeding tools. PMID:32054459
Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis. PMID:32050897
Transcriptomic profiling of cell-free and vesicular microRNAs from matched arterial and venous sera. PMID:31632620
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle. PMID:31077144
Long Noncoding RNA and Protein Interactions: From Experimental Results to Computational Models Based on Network Methods. PMID:30875752
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
RNA interference: new mechanistic and biochemical insights with application in oral cancer therapy. PMID:29922059
Evaluation of serum extracellular vesicle isolation methods for profiling miRNAs by next-generation sequencing. PMID:29887978
Expanding the horizons of microRNA bioinformatics. PMID:29871895
Present Scenario of Long Non-Coding RNAs in Plants. PMID:29657289
Glucocorticoid receptor overexpression slightly shifts microRNA expression patterns in triple-negative breast cancer. PMID:29620157
An epigenetic basis for an omnigenic model of psychiatric disorders. PMID:29378208
The Dynamics of microRNA Transcriptome in Bovine Corpus Luteum during Its Formation, Function, and Regression. PMID:29326752
Circular RNA expression profiles in the porcine liver of two distinct phenotype pig breeds. PMID:29268579
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
MODOMICS: a database of RNA modification pathways. 2017 update. PMID:29106616
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. PMID:29069520
Physics-based all-atom modeling of RNA energetics and structure. PMID:28815951
The yeast noncoding RNA interaction network. PMID:28701522
In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host physiology. PMID:28473453
Genome-wide identification and characterization of small RNAs in Rhodobacter capsulatus and identification of small RNAs affected by loss of the response regulator CtrA. PMID:28296577
Can milk cell or skim milk miRNAs be used as biomarkers for early pregnancy detection in cattle? PMID:28234939
Y RNA fragment in extracellular vesicles confers cardioprotection via modulation of IL-10 expression and secretion. PMID:28167565
Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools. PMID:28035947
The BIG Data Center: from deposition to integration to translation. PMID:27899658
European Nucleotide Archive in 2016. PMID:27899630
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
The state of play in higher eukaryote gene annotation. PMID:27773922
RNAlien - Unsupervised RNA family model construction. PMID:27330139
Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families. PMID:27322404
SimRNAweb: a web server for RNA 3D structure modeling with optional restraints. PMID:27095203
Guidelines for the functional annotation of microRNAs using the Gene Ontology. PMID:26917558
Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout. PMID:26895175
Consolidating and Exploring Antibiotic Resistance Gene Data Resources. PMID:26818666
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes. PMID:26673694
Long non-coding RNA regulation of reproduction and development. PMID:26517592
ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments. PMID:26237225
R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server. PMID:26048960
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI. PMID:25855807
Biological databases for human research. PMID:25712261
The 2015 Nucleic Acids Research Database Issue and molecular biology database collection. PMID:25593347
Content discovery and retrieval services at the European Nucleotide Archive. PMID:25404130 - http://dx.doi.org/10.1093/nar/gky1034
Tags:
Tags
More detailed information about this field from each metasource.
non-coding rna
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleic acid sequence
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequence annotation
metasource: Fairsharing.org
version: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:39.141159
Tags
More detailed information about this field from each metasource.
non-coding rna
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleic acid sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequence annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAcentral; RNAcentral; DOI: https://doi.org/10.25504/FAIRsharing.KcCjL7; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:39.141159
non-coding rna nucleic acid sequence rna sequence sequence annotation rna sequence functional, regulatory and non-coding rna
Need help integrating and/or managing biomedical data?