RNA Atlas of Structure Probing
Names
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RNA Atlas of Structure Probing
metasource: Fairsharing.org
version: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
RASP
metasource: Fairsharing.org
version: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
RNA Atlas of Structure Probing
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
RASP
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
RNA Atlas of Structure Probing
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
RASP
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
RASP (RNA Atlas of Structure Probing) is build from 161 deduplicated transcriptome-wide RNA secondary structures from datasets culled from 38 papers. RASP covers 18 species across animals, plants, bacteria, fungi, and also viruses, and categorizes 18 experimental methods including DMS-seq, SHAPE-Seq, SHAPE-MaP, and icSHAPE, etc. Specially, RASP curates the up-to-date datasets of several RNA secondary structure probing studies for the RNA genome of SARS-CoV-2, the RNA virus that caused the on-going COVID-19 pandemic. RASP also provides a user-friendly interface to query, browse, and visualize RNA structure profiles, offering a shortcut to accessing RNA secondary structures grounded in experimental data.
Description
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RASP (RNA Atlas of Structure Probing) is build from 161 deduplicated transcriptome-wide RNA secondary structures from datasets culled from 38 papers. RASP covers 18 species across animals, plants, bacteria, fungi, and also viruses, and categorizes 18 experimental methods including DMS-seq, SHAPE-Seq, SHAPE-MaP, and icSHAPE, etc. Specially, RASP curates the up-to-date datasets of several RNA secondary structure probing studies for the RNA genome of SARS-CoV-2, the RNA virus that caused the on-going COVID-19 pandemic. RASP also provides a user-friendly interface to query, browse, and visualize RNA structure profiles, offering a shortcut to accessing RNA secondary structures grounded in experimental data.
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
RNA secondary structure probing data
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://rasp.zhanglab.netWebpage
More detailed information about this field from each metasource.
http://rasp.zhanglab.net
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://rasp.zhanglab.net/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)Licence name
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Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Licence URL
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https://creativecommons.org/licenses/by-nc/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
https://doi.org/10.1093/nar/gkaa880
metasource: Fairsharing.org
version: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
https://doi.org/10.1093/nar/gkaa880
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags:
Tags
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rna secondary structure
metasource: Fairsharing.org
version: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequence
metasource: Fairsharing.org
version: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Tags
More detailed information about this field from each metasource.
rna secondary structure
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: RASP; RNA Atlas of Structure Probing; DOI: https://doi.org/10.25504/FAIRsharing.H3pwqc; Last edited: April 27, 2021, 8:01 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna secondary structure rna sequence
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