PlantCircNet

PlantCircNet is a database that provides plant circRNA-miRNA-gene regulatory networks, as well as circRNA information and circRNA expression profiles. It provides convenient search functions for circRNA-associated regulatory networks and enables users to retrieve regulatory interactions of interest by circRNAs, miRNAs and mRNAs across eight model species. Sequences search is also available. And an enrichment analysis tool has been provided for Gene Ontology categories of miRNA targets.

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Publications

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PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks
PMID: 31725858

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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• PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks PubMed citations: 11.

  11 articles citing: PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks

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  Genome-Wide Identification of Circular RNAs Potentially Involved in the Biosynthesis of Secondary Metabolites in Salvia miltiorrhiza. PMID:34804110

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  At-C-RNA database, a one-stop source for information on circRNAs in Arabidopsis thaliana in a unified format. PMID:34788390

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  MicroRNA-mediated bioengineering for climate-resilience in crops. PMID:34747296

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  Computational Analysis of Transposable Elements and CircRNAs in Plants. PMID:34195962

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  CircR2Cancer: a manually curated database of associations between circRNAs and cancers. PMID:33181824

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  Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network. PMID:32580123

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  GreenCircRNA: a database for plant circRNAs that act as miRNA decoys. PMID:32510565

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  Characterization and Function of Circular RNAs in Plants. PMID:32509801

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  HIPK3 Promotes Growth and Metastasis of Esophageal Squamous Cell Carcinoma via Regulation of miR-599/c-MYC Axis. PMID:32189968

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  The bioinformatics toolbox for circRNA discovery and analysis. PMID:32103237

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  Circular RNAs-The Road Less Traveled. PMID:31998746

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functional, regulatory and non-coding rna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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plant biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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ontology and terminology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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functional, regulatory and non-coding rna plant biology gene transcripts molecular interactions, pathways and networks ontology and terminology