Tag: dna polymorphism


Found 62 sources
Source Match ReputationScore*

Database of Single Nucleotide Polymorphism


dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations an ...
100%

Genome-Wide Association Studies Catalog


The Genome-Wide Association Studies (GWAS) Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, ...
83%

Comprehensive Antibiotic Resistance Database


A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes.
69%

CRISPRFinder


Detects this family of direct repeats found in the DNA of many bacteria and archaea.
65%

Genome Database for Rosaceae


The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database providing centralized access to Rosaceae genomics and genetics data and analysis tools to facilitate cross-species utilization of data.
63%

Polymorphism in microRNAs and their TargetSites


PolymiRTS (Polymorphism in microRNAs and their TargetSites) is a database of naturally occurring DNA variations in microRNA (miRNA) seed regions and miRNA target sites. MicroRNAs pair to the transcripts of protein-coding genes and cause translational ...
60%

SNPedia


SNPedia is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). Curati ...
58%

Autism Knowledgebase


Autism genetics KnowledgeBase, an evidence-based knowledgebase of autism genetics.
54%

GWAS Central


GWAS Central stores genome-wide association study data. The database content comprises direct submissions received from GWAS authors and consortia in addition to actively gathered data sets from various public sources. GWAS data are discoverable from ...
53%

Allele frequency resource for research and teaching


ALFRED is designed to make allele frequency data on human population samples readily available for use by the scientific and educational communities.
51%

Patrocles


Polymorphic miRNA-mediated gene regulation in vertebrates
51%

Selective Targets database


The Selective Targets database (SelTarbase ) is a curated database of public MNR mutation data in microsatellite unstable human tumors. A comprehensive database of all human coding, untranslated, non-coding RNA- and intronic MNRs (MNR_ensembl) is als ...
50%

CADgene


Coronary Artery Disease gene database
49%

non-B DB


non-B DNA forming motifs in mammalian genomes
48%

DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks


The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and genes in their chromosomal context.
48%

LincSNP


Association of human lncRNAs with disease-related SNPs
48%

PmiRKB


Plant microRNA knowledge base
46%

HGVbase


Attempt to summarize all known sequence variations in the human genome, to facilitate research into how genotypes affect common diseases, drug responses, and other complex phenotypes.
46%

ProRepeat: An Integrated Repository for Studying Amino Acid Tandem Repeats in Proteins


ProRepeat is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats. ProRepeat collects repeats from all proteins included in the UniProt knowledgebase, together wit ...
46%

PLANdbAffy


Probe-Level Annotation Database for Affymetrix microarrays
46%

CaSNP


Cancer SNP data on copy number alterations
45%

PhosSNP


A database of phosphorylation-related SNP (phosSNP) which are non-synonymous SNP (nsSNP) that affect the protein phosphorylation status. Using an in-house developed kinase-specific phosphorylation site predictor (GPS 2.0), we computationally detected ...
45%

dbSNP-Q


GWAS prioritization tool
45%

MouseIndelDB


Mouse Indel Polymorphism Database
45%

Satellog


Satellog is a database that catalogs all pure 1-16 repeat unit satellite repeats in the human genome along with supplementary data. Satellog analyzes each pure repeat in UniGene clusters for evidence of repeat polymorphism.
45%

TIARA - Total Integrated Archive of short-Read and Array


The Total Integrated Archive of short-Read and Array (TIARA) accumulates raw-level personal genomic data from whole genome next-generation sequencing (NGS) and comparative genomic hybridization (CGH) arrays. Initially, it contains 36 individual genom ...
44%

SymbioGBR


Database of all currently available Symbiodinium sequences and associated host information of data collected from the Great Barrier Reef into a single relational database.
44%

PSSRdb


Polymorphic Simple Sequence Repeats Database
43%

ePlant


Visualize the natural connections between DNA sequences, natural variation (polymorphisms), molecular structures, protein-protein interactions, and gene expression patterns by combining several data visualization tools with a zoomable user interface.
43%

LncVar


Database of genetic variations associated with long noncoding genes.
43%

The catfish genome database (cBARBEL)


Online open-access database for genome biology of ictalurid catfish (Ictalurus spp.). cBARBEL provides BLAST-based, fuzzy and specific search functions, visualization of catfish linkage, physical and integrated maps, a catfish EST contig viewer with ...
42%

dbDNV


The duplicated gene nucleotide variants database (dbDNV) (http://goods.ibms.sinica.edu.tw/DNVs/) promotes accurate variation annotation. Aside from the flat file download, users can explore the gene-related duplications and the associated DNVs by DGL ...
42%

PGG Han


The Han Chinese Genomes Database (PGG.Han) serves as the central repository of the genomic data of the Han Chinese Genomes Project (Phase I). As is its current version, PGG.Han archives genomic data of 114,783 Han Chinese individuals (a.k.a. Han100 ...
42%

BacWGSTdb


Bacterial whole genome sequence typing database
42%

ncRNA-eQTL


A database to systematically evaluate the effects of SNPs on non-coding RNA expression across cancer types | Numerous studies indicate that ncRNAs have critical functions across biological processes, and single nucleotide polymorphisms (SNPs) could c ...
41%

MBKbase rice


An integrated omics knowledgebase for molecular breeding in rice. Rice Phenotype Search and Summary. Rice Genotype Search and Summary. Molecular Breeding Knowledge Database. Created with the Personal Edition of HelpNDoc: News and information abou ...
41%

ENdb


A manually curated database of experimentally supported enhancers for human and mouse. Enhancers are a class of cis-regulatory elements that can increase gene transcription by forming loops in intergenic regions, introns and exons
40%

HIrisPlex-S


Massively parallel sequencing solutions for two common forensically used platforms | HIrisPlex-S Eye, Hair and Skin Colour DNA Phenotyping Webtool | 8px 9px 10px 11px 12px 13px 14px 15px 16px 17px 18px | With the advancement of DNA phenotyping as a t ...
40%

CAUSALdb


A database for disease/trait causal variants identified using summary statistics of genome-wide association studies. A GWAS fine-mapping pipeline used in CAUSALdb. CAUSALdb integrates large numbers of GWAS summary statistics and identifies credible ...
40%

ImtRDB


Database and software for mitochondrial imperfect interspersed repeats annotation.
40%

VegMarks


Construction of a core collection of eggplant (Solanum melongena L.) based on genome-wide SNP and SSR genotypes. a DNA marker database for vegetables
40%

Animal-ImputeDB


A comprehensive database with multiple animal reference panels for genotype imputation.
40%

inTB


Data integration platform for molecular and clinical epidemiological analysis of tuberculosis.
39%

MAC-INMV-SSR


A web application dedicated to genotyping members of Mycobacterium avium complex (MAC) including Mycobacterium avium subsp. paratuberculosis strains. Genotyping of Mycobacterium avium subsp. paratuberculosis (Map) is an indispensable tool for survei ...
39%

EnhancerDB


Database to discover the regulate relationships in the context of enhancers.
39%

PopTargs


PopTargs is a database for studying population evolutionary genetics of human microRNA target sites. These are the scripts used to create the MySQL database that is used by PopTargs.essex.ac.uk. The pipeline can be altered to create similar database ...
39%

MSDB


A comprehensive, annotated database of microsatellites. Multiple Loci VNTR Analysis databases and software. Multi Locus VNTR Analysis (MLVA) databases and software. MICAS 3.0, Microsatellite Analysis Server is the online repository of All Bacteria ...
39%

RareLSD


a manually curated database of lysosomal enzymes associated with rare diseases. RareLSD: Database for Human Lysosomal Enzymes. RareLSD: A Database for Human Lysosomal Enzymes. RareLSD is a manually curated database of 63 lysosomal enzymes present i ...
39%

PSMD


An extensive database for pan-species microsatellite investigation and marker development. A Django app for Pan-Species Microsatellite Database. Pan-Species Microsatellite Database. Microsatellites (simple repeat sequences, SSRs or short tandem re ...
39%

ATACdb


Human Assay-for-Transposase-Accessible Chromatin data
38%

CRISPRs Database


Gateway to publicly accessible CRISPRs database.
35%

Bovine Genome Variation Database (BGVD)


An integrated Web-database for bovine sequencing variations and selective signatures.
35%

SeattleSNPs variation discovery resource


Database for identifying, genotyping, and modelling the associations between single nucleotide polymorphisms (SNPs) in candidate genes and pathways that underlie inflammatory responses in humans.
35%

SNPs


Genome-wide analysis of polymorphisms identified domestication-associated polymorphism desert carrying important rice grain size/weight QTL | By using SNP-Seek, you abide by the data use license stated | Query for SNPs from the 3000 genome project | ...
35%

ACE2 Netlas


In-silico functional characterization and drug-gene interactions of ACE2 gene network to understand its potential involvement in COVID-19 susceptibility.
35%

GeneSNPs


Gene-centric map of the genome structure, coding sequences, and identified allelic variation in genes being targeted for a role in disease susceptibility by the NIEHS (National Institute of Evironmental Health Sciences). This database provides a grap ...
35%

GWAS-VCF


The variant call format provides efficient and robust storage of GWAS summary statistics. VCF vs plain text GWAS storage formats.
35%

Staphopia


Staphopia is a database focusing on the genomes of the bacterial pathogen Staphylococcus aureus. Life-threatening Methicillin-resistant S. aureus (MRSA) infections strike across our society, both in the community and hospital settings. In recent year ...
35%

BE-FF


BE-FF (Base Editors Functional Finder) is a pythonic tool that identifies suitable base editors to repair a given single nucleotide variation (SNV). The web tool does not require any registration, installation or additional plugins. By inserting the ...
35%

MalariaGEN


An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples. Plasmodium falciparum Community Project. Dried blood spot collection. Photo credit: Will Hamilton. HiSeq machines at the Wellcome Trust Sanger Institute. Photo c ...
35%

AsCRISPR


a web server for allele-specific sgRNA design in precision medicine | Abstract Allele-specific targeting by CRISPR provides a point of entry for personalized gene therapy of dominantly inherited diseases, by selectively disrupting the mutant alleles ...
35%

MaizeSNPDB


A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines. This R script chara-2-sparse.R is used to convert a traditional character genotype matrix into an integer sparse genotype matrix. This R script can be used ...
35%

*ReputationScore indicates how established a given datasource is. Find out more.




Need help integrating and/or managing biomedical data?