3DSNP

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3DSNP

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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3dsnp

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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Other names: 3dsnp

3DSNP is a database for comprehensively annotating the regulatory function of human noncoding SNPs by exploring their 3D interactions with genes and genetically associated SNPs mediated by chromatin loops. 3DSNP integrates Hi-C data together with a variety of chromatin signatures across a broad range of cell types and provides a series of sortable and searchable tables and publish-ready figures to help researchers discover the regulatory roles of noncoding SNPs and small Indels upon their 1D and 3D genomic features.

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Publications

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3DSNP 2.0: update and expansion of the noncoding genomic variant annotation database
PMID: 34723317

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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http://dx.doi.org/10.1093/nar/1955

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• 3DSNP 2.0: update and expansion of the noncoding genomic variant annotation database PubMed citations: 1.

  1 articles citing: 3DSNP 2.0: update and expansion of the noncoding genomic variant annotation database

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  The 2022 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:34986604
• http://dx.doi.org/10.1093/nar/1955

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human and other vertebrate genomes

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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human genome databases, maps and viewers

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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dna polymorphism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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transcription factors and regulatory sites

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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chromosome conformation capture

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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mapping

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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epigenetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:47.559600

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human and other vertebrate genomes human genome, maps and viewers dna polymorphism transcription factors and regulatory sites chromosome conformation capture mapping epigenetics