Genome Database for Rosaceae

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Genome Database for Rosaceae

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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GDR

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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Genome Database for Rosaceae (GDR)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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gdr

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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Other names: GDR, Genome Database for Rosaceae (GDR), gdr

The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database providing centralized access to Rosaceae genomics and genetics data and analysis tools to facilitate cross-species utilization of data.

Webpage:

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Publications:

Publications

More detailed information about this field from each metasource. ×

GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data
PMID: 17932055

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research
PMID: 15357877

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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http://dx.doi.org/10.1093/nar/gkt1012

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data PubMed citations: 67.

  67 articles citing: GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data

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  Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members. PMID:35842574

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  Fruit Development in Sweet Cherry. PMID:35736682

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  Almond diversity and homozygosity define structure, kinship, inbreeding, and linkage disequilibrium in cultivated germplasm, and reveal genomic associations with nut and seed weight. PMID:33423037

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  Cloning and Functional Determination of Ammonium Transporter PpeAMT3;4 in Peach. PMID:33344631

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  Identification and characterization of QTLs for fruit quality traits in peach through a multi-family approach. PMID:32727362

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  Foliar Spraying with Compound Amino Acid-Iron Fertilizer Increases Leaf Fresh Weight, Photosynthesis, and Fe-S Cluster Gene Expression in Peach (Prunus persica (L.) Batsch). PMID:32596289

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  Characterization and Expression of KT/HAK/KUP Transporter Family Genes in Willow under Potassium Deficiency, Drought, and Salt Stresses. PMID:32596286

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  N 6-Methyladenine DNA Modification in the Woodland Strawberry (Fragaria vesca) Genome Reveals a Positive Relationship With Gene Transcription. PMID:31998359

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  Genome-wide analysis of polygalacturonase gene family from pear genome and identification of the member involved in pear softening. PMID:31881836

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  Posttranscriptional Regulation of RhBRC1 (Rosa hybrida BRANCHED1) in Response to Sugars is Mediated via its Own 3' Untranslated Region, with a Potential Role of RhPUF4 (Pumilio RNA-Binding Protein Family). PMID:31382685

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  High-density multi-population consensus genetic linkage map for peach. PMID:30462743

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  15 years of GDR: New data and functionality in the Genome Database for Rosaceae. PMID:30357347

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  Identification of a strawberry NPR-like gene involved in negative regulation of the salicylic acid-mediated defense pathway. PMID:30312354

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  Recent progress in whole genome sequencing, high-density linkage maps, and genomic databases of ornamental plants. PMID:29681748

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  The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry). PMID:29659812

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  Genome-wide characterization, evolution, and expression analysis of the leucine-rich repeat receptor-like protein kinase (LRR-RLK) gene family in Rosaceae genomes. PMID:29017442

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  The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding. PMID:28541388

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  Phylogenetic analysis of IDD gene family and characterization of its expression in response to flower induction in Malus. PMID:28314937

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  Bioinformatics Approach in Plant Genomic Research. PMID:27499685

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  Identification of Known and Novel microRNAs and Their Targets in Peach (Prunus persica) Fruit by High-Throughput Sequencing. PMID:27466805

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  Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum. PMID:27146851

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  Genomics-assisted breeding in fruit trees. PMID:27069395

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  Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars. PMID:26912051

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  Cell wall-related genes studies on peach cultivars with differential susceptibility to woolliness: looking for candidates as indicators of chilling tolerance. PMID:26905727

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  A new three-locus model for rootstock-induced dwarfing in apple revealed by genetic mapping of root bark percentage. PMID:26826217

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  Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.). PMID:26499487

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  Identification, validation and cross-species transferability of novel Lavandula EST-SSRs. PMID:25534945

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  solGS: a web-based tool for genomic selection. PMID:25495537

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  The Sol Genomics Network (SGN)--from genotype to phenotype to breeding. PMID:25428362

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  Exploring the genes of yerba mate (Ilex paraguariensis A. St.-Hil.) by NGS and de novo transcriptome assembly. PMID:25330175

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  High-throughput sequencing reveals small RNAs involved in ASGV infection. PMID:24998458

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  Characterization of an apple TT2-type R2R3 MYB transcription factor functionally similar to the poplar proanthocyanidin regulator PtMYB134. PMID:24923676

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  Anchoring linkage groups of the Rosa genetic map to physical chromosomes with tyramide-FISH and EST-SNP markers. PMID:24755945

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  Extending the sRNAome of apple by next-generation sequencing. PMID:24752316

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  Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697

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  A bulk segregant gene expression analysis of a peach population reveals components of the underlying mechanism of the fruit cold response. PMID:24598973

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  Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica. PMID:24341635

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  MEGANTE: a web-based system for integrated plant genome annotation. PMID:24253915

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  Addition of a breeding database in the Genome Database for Rosaceae. PMID:24247530

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  The Genome Database for Rosaceae (GDR): year 10 update. PMID:24225320

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  20 years since the introduction of DNA barcoding: from theory to application. PMID:24203863

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  CottonGen: a genomics, genetics and breeding database for cotton research. PMID:24203703

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  Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases. PMID:24163125

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  Evaluation of genome sequencing quality in selected plant species using expressed sequence tags. PMID:23922843

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  Comparative genomics analysis in Prunoideae to identify biologically relevant polymorphisms. PMID:23763653

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  A genome-wide analysis of the LBD (LATERAL ORGAN BOUNDARIES domain) gene family in Malus domestica with a functional characterization of MdLBD11. PMID:23468909

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  Construction and comparative analyses of highly dense linkage maps of two sweet cherry intra-specific progenies of commercial cultivars. PMID:23382953

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  Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PMID:23284615

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  The first genetic map of the American cranberry: exploration of synteny conservation and quantitative trait loci. PMID:23224333

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  Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars. PMID:23171001

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  Genome wide identification of chilling responsive microRNAs in Prunus persica. PMID:22978558

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  The peach (Prunus persica L. Batsch) genome harbours 10 KNOX genes, which are differentially expressed in stem development, and the class 1 KNOPE1 regulates elongation and lignification during primary growth. PMID:22888130

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  Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. PMID:22631220

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  AlliumMap-A comparative genomics resource for cultivated Allium vegetables. PMID:22559261

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  Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies. PMID:22475018

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  A microsatellite linkage map for the cultivated strawberry (Fragaria × ananassa) suggests extensive regions of homozygosity in the genome that may have resulted from breeding and selection. PMID:22218676

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  VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. PMID:22135296

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  The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. PMID:22120662

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  Phytozome: a comparative platform for green plant genomics. PMID:22110026

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  Metabolic profiling during peach fruit development and ripening reveals the metabolic networks that underpin each developmental stage. PMID:22021422

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  Tripal: a construction toolkit for online genome databases. PMID:21959868

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  Construction of an almond linkage map in an Australian population Nonpareil x Lauranne. PMID:20932335

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  An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database). PMID:20576098

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  A fruit quality gene map of Prunus. PMID:19995417

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  Comparative EST transcript profiling of peach fruits under different post-harvest conditions reveals candidate genes associated with peach fruit quality. PMID:19744325

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  A blackberry (Rubus L.) expressed sequence tag library for the development of simple sequence repeat markers. PMID:18570660

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  Multiple models for Rosaceae genomics. PMID:18487361
• GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research PubMed citations: 33.

  33 articles citing: GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research

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  Time Is of the Essence-Early Activation of the Mevalonate Pathway in Apple Challenged With Gray Mold Correlates With Reduced Susceptibility During Postharvest Storage. PMID:35633666

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  Genome-wide characterization of PEBP family genes in nine Rosaceae tree species and their expression analysis in P. mume. PMID:33622244

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  Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. PMID:32621602

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  DNA N6-Methyladenine Modification in Plant Genomes-A Glimpse into Emerging Epigenetic Code. PMID:32075056

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  MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae. PMID:31240103

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  15 years of GDR: New data and functionality in the Genome Database for Rosaceae. PMID:30357347

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  Recent progress in whole genome sequencing, high-density linkage maps, and genomic databases of ornamental plants. PMID:29681748

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  Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data. PMID:29423238

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  Bioinformatics identification and transcript profile analysis of the mitogen-activated protein kinase gene family in the diploid woodland strawberry Fragaria vesca. PMID:28562633

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  In silico search, characterization and validation of new EST-SSR markers in the genus Prunus. PMID:27389023

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  Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.). PMID:26499487

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  High-throughput sequencing reveals small RNAs involved in ASGV infection. PMID:24998458

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  Genomic analysis reveals MATH gene(s) as candidate(s) for Plum pox virus (PPV) resistance in apricot (Prunus armeniaca L.). PMID:23672686

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  An S-locus independent pollen factor confers self-compatibility in 'Katy' apricot. PMID:23342044

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  Physical mapping of a pollen modifier locus controlling self-incompatibility in apricot and synteny analysis within the Rosaceae. PMID:22481163

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  BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. PMID:22139929

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  Tripal: a construction toolkit for online genome databases. PMID:21959868

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  New approaches to Prunus transcriptome analysis. PMID:21584650

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  Comparative EST transcript profiling of peach fruits under different post-harvest conditions reveals candidate genes associated with peach fruit quality. PMID:19744325

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  Synteny of Prunus and other model plant species. PMID:19208249

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  Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology. PMID:18652646

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  Synteny conservation between two distantly-related Rosaceae genomes: Prunus (the stone fruits) and Fragaria (the strawberry). PMID:18564412

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  A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance. PMID:18554400

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  Multiple models for Rosaceae genomics. PMID:18487361

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  Identification of woolliness response genes in peach fruit after post-harvest treatments. PMID:18453640

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  GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. PMID:17932055

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  Mapping of A1 conferring resistance to the aphid Amphorophora idaei and dw (dwarfing habit) in red raspberry (Rubus idaeus L.) using AFLP and microsatellite markers. PMID:17374159

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  The development and mapping of functional markers in Fragaria and their transferability and potential for mapping in other genera. PMID:17091261

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  CMD: a Cotton Microsatellite Database resource for Gossypium genomics. PMID:16737546

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  Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. PMID:16615871

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  An enhanced microsatellite map of diploid Fragaria. PMID:16505996

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  Identification and mapping of resistance gene analogs (RGAs) in Prunus: a resistance map for Prunus. PMID:16195885

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  FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression. PMID:15610557
• http://dx.doi.org/10.1093/nar/gkt1012

Tags:

Tags

More detailed information about this field from each metasource. ×

annotation

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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dna sequence data

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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gene

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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genome

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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genotype

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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messenger rna

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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phenotype

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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publication

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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transcript

metasource: Fairsharing.org
version: FAIRsharing.org: GDR; Genome Database for Rosaceae; DOI: https://doi.org/10.25504/FAIRsharing.6v96ma; Last edited: April 26, 2021, 3:57 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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plant databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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other plants

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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mapping

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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dna polymorphism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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physics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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genetic variation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.464456

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dna sequences gene genome genotype messenger rna phenotype publication transcript plant other plants mapping gene transcripts dna polymorphism physics genetic variation