Xenopus laevis and tropicalis biology and genomics resource
Names
More detailed information about this field from each metasource.
Xenopus laevis and tropicalis biology and genomics resource
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
XenBase
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Xenopus Genomics Database
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
xenbase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Names
More detailed information about this field from each metasource.
Xenopus laevis and tropicalis biology and genomics resource
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
XenBase
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Xenopus Genomics Database
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
xenbase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
Other names: Xenbase, XenBase, Xenopus Genomics Database, xenbase
Names
More detailed information about this field from each metasource.
Xenopus laevis and tropicalis biology and genomics resource
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
XenBase
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Xenopus Genomics Database
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
xenbase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis which was created to improve knowledge of developmental and disease processes. Through curation and automated data provisioning from various sources, Xenbase aims to integrate the body of knowledge on Xenopus genomics and biology together with the visualization of biologically-significant interactions.
Description
More detailed information about this field from each metasource.
Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis which was created to improve knowledge of developmental and disease processes. Through curation and automated data provisioning from various sources, Xenbase aims to integrate the body of knowledge on Xenopus genomics and biology together with the visualization of biologically-significant interactions.
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase (www.xenbase.org) is a model organism database integrating a diverse array of biological and genomic data on the frogs, Xenopus laevis and Xenopus (Silurana) tropicalis. Data is collected from high-throughput screens, other databases, community submissions and scientific literature and integrated into a number of database modules covering subjects such as genes, gene expression, genomic analysis, literature and community. Searchable interfaces are provided for finding genes, publications, people, labs, organizations, Xenopus lines, and for browsing the X. tropicalis genome.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Xenbase's mission is to provide the international research community with a comprehensive, integrated and easy to use web based resource that gives access the diverse and rich genomic, expression and functional data available from Xenopus research. Xenbase also provides a critical data sharing infrastructure for many other NIH-funded projects, and is a focal point for the Xenopus community. In addition to our primary goal of supporting Xenopus researchers, Xenbase enhances the availability and visibility of Xenopus data to the broader biomedical research community.
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
The model organism database for Xenopus laevis and X. (Silurana) tropicalis.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
Webpage:
http://www.xenbase.orgWebpage
More detailed information about this field from each metasource.
http://www.xenbase.org
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
https://www.xenbase.org/entry/
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Copyrights
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://www.xenbase.org/other/static-xenbase/aboutMOD.jsp
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
Publications:
(9)
Publications
More detailed information about this field from each metasource.
Xenbase: gene expression and improved integration
PMID: 19884130
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes
PMID: 25313157
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
PMID: 24139024
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase: Facilitating the Use of Xenopus to Model Human Disease
PMID: 30863320
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database
PMID: 29761462
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
PMID: 31733057
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenopus genomic data and browser resources
PMID: 27039265
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud
PMID: 25380782
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gku956
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Xenbase: gene expression and improved integration
PMID: 19884130
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes
PMID: 25313157
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
PMID: 24139024
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase: Facilitating the Use of Xenopus to Model Human Disease
PMID: 30863320
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database
PMID: 29761462
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
PMID: 31733057
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xenopus genomic data and browser resources
PMID: 27039265
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud
PMID: 25380782
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gku956
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
-
Xenbase: gene expression and improved integration
PubMed citations: 76.
76 articles citing: Xenbase: gene expression and improved integration
dmrt2 and myf5 Link Early Somitogenesis to Left-Right Axis Determination in Xenopus laevis. PMID:35813209
Hif1α and Wnt are required for posterior gene expression during Xenopus tropicalis tail regeneration. PMID:35065905
Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network. PMID:35049502
Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms. PMID:34900995
Evolutionary dynamics of DIRS-like and Ngaro-like retrotransposons in Xenopus laevis and Xenopus tropicalis genomes. PMID:34792579
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. PMID:34791383
Temporal and spatial transcriptomic dynamics across brain development in Xenopus laevis tadpoles. PMID:34751375
Bicc1 and Dicer regulate left-right patterning through post-transcriptional control of the Nodal inhibitor Dand5. PMID:34531379
Identification of the Fc-alpha/mu receptor in Xenopus provides insight into the emergence of the poly-Ig receptor (pIgR) and mucosal Ig transport. PMID:34411303
Tau, XMAP215/Msps and Eb1 co-operate interdependently to regulate microtubule polymerisation and bundle formation in axons. PMID:34228717
Functional assessment of the "two-hit" model for neurodevelopmental defects in Drosophila and X. laevis. PMID:33819264
From whole-mount to single-cell spatial assessment of gene expression in 3D. PMID:33097816
Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development. PMID:30352852
Wnt evolution and function shuffling in liberal and conservative chordate genomes. PMID:30045756
Specifying neural crest cells: From chromatin to morphogens and factors in between. PMID:29722151
Role of maternal Xenopus syntabulin in germ plasm aggregation and primordial germ cell specification. PMID:29037933
Desynchronizing Embryonic Cell Division Waves Reveals the Robustness of Xenopus laevis Development. PMID:28978482
The WAGR syndrome gene PRRG4 is a functional homologue of the commissureless axon guidance gene. PMID:28859078
Dual control of pcdh8l/PCNS expression and function in Xenopus laevis neural crest cells by adam13/33 via the transcription factors tfap2α and arid3a. PMID:28829038
Limited genomic consequences of hybridization between two African clawed frogs, Xenopus gilli and X. laevis (Anura: Pipidae). PMID:28439068
Quantifying the relative contributions of different solute carriers to aggregate substrate transport. PMID:28091567
BMP and retinoic acid regulate anterior-posterior patterning of the non-axial mesoderm across the dorsal-ventral axis. PMID:27406002
Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm. PMID:27092474
Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula. PMID:27016259
Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development. PMID:26774488
Expression pattern of bcar3, a downstream target of Gata2, and its binding partner, bcar1, during Xenopus development. PMID:26631802
On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development. PMID:26555057
Genome-Wide Identification and Expression of Xenopus F-Box Family of Proteins. PMID:26327321
Short linear motif acquisition, exon formation and alternative splicing determine a pathway to diversity for NCoR-family co-repressors. PMID:26289800
Annexin A3 Regulates Early Blood Vessel Formation. PMID:26182056
Xenbase: Core features, data acquisition, and data processing. PMID:26150211
The mouse gene expression database: New features and how to use them effectively. PMID:26045019
Identification of REST targets in the Xenopus tropicalis genome. PMID:25971704
What to compare and how: Comparative transcriptomics for Evo-Devo. PMID:25864439
A regression-based differential expression detection algorithm for microarray studies with ultra-low sample size. PMID:25738861
Regulation of ECM degradation and axon guidance by growth cone invadosomes. PMID:25564649
Loss of Extended Synaptotagmins ESyt2 and ESyt3 does not affect mouse development or viability, but in vitro cell migration and survival under stress are affected. PMID:25486202
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. PMID:25313157
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. PMID:24397936
Protein interactions in Xenopus germ plasm RNP particles. PMID:24265795
A functional genome-wide in vivo screen identifies new regulators of signalling pathways during early Xenopus embryogenesis. PMID:24244509
Wnt11b is involved in cilia-mediated symmetry breakage during Xenopus left-right development. PMID:24058481
On the reproducibility of science: unique identification of research resources in the biomedical literature. PMID:24032093
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. PMID:23599415
Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems. PMID:23587066
Regulation of germ layer formation by pluripotency factors during embryogenesis. PMID:23497659
The Xenopus oocyte: a single-cell model for studying Ca2+ signaling. PMID:23457336
Metabolic regulation of CaMKII protein and caspases in Xenopus laevis egg extracts. PMID:23400775
PAK-PIX interactions regulate adhesion dynamics and membrane protrusion to control neurite outgrowth. PMID:23321640
The Xenbase literature curation process. PMID:23303299
Elk3 is essential for the progression from progenitor to definitive neural crest cell. PMID:23266330
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. PMID:23161684
Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis. PMID:23154985
Xenbase: expansion and updates of the Xenopus model organism database. PMID:23125366
Next generation sequencing and comparative analyses of Xenopus mitogenomes. PMID:22992290
Agonistic and antagonistic roles for TNIK and MINK in non-canonical and canonical Wnt signalling. PMID:22984420
On-line resources for Xenopus. PMID:22956109
Deep ancestry of mammalian X chromosome revealed by comparison with the basal tetrapod Xenopus tropicalis. PMID:22800176
Probing the Xenopus laevis inner ear transcriptome for biological function. PMID:22676585
Photoconversion for tracking the dynamics of cell movement in Xenopus laevis embryos. PMID:22661444
FGF signaling establishes the anterior border of the Ciona neural tube. PMID:22627287
A versatile protocol for mRNA electroporation of Xenopus laevis embryos. PMID:22474651
Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis. PMID:22159581
Developing a community-based genetic nomenclature for anole lizards. PMID:22077994
HDAC activity is required during Xenopus tail regeneration. PMID:22022609
Xenopus research: metamorphosed by genetics and genomics. PMID:21963197
Toward an unbiased evolutionary platform for unraveling Xenopus developmental gene networks. PMID:21956895
Regulation of endothelial cell development by ETS transcription factors. PMID:21945894
A comparative gene expression database for invertebrates. PMID:21861937
Differential RNA-binding activity of the hnRNP G protein correlated with the sex genotype in the amphibian oocyte. PMID:21278421
Rapid differential transport of Nodal and Lefty on sulfated proteoglycan-rich extracellular matrix regulates left-right asymmetry in Xenopus. PMID:21205792
The mouse Gene Expression Database (GXD): 2011 update. PMID:21062809
Aging of Xenopus tropicalis eggs leads to deadenylation of a specific set of maternal mRNAs and loss of developmental potential. PMID:21042572
The HUDSEN Atlas: a three-dimensional (3D) spatial framework for studying gene expression in the developing human brain. PMID:20979583
genenames.org: the HGNC resources in 2011. PMID:20929869
Functional implications of the emergence of alternative splicing in hnRNP A/B transcripts. PMID:20651029 -
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes
PubMed citations: 70.
70 articles citing: Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes
miR 31-3p Has the Highest Expression in Cesarean Scar Endometriosis. PMID:35563053
Cryopreservation and Laser Nanowarming of Zebrafish Embryos Followed by Hatching and Spawning. PMID:32996298
A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery. PMID:32898505
"Lost and Found": snoRNA Annotation in the Xenopus Genome and Implications for Evolutionary Studies. PMID:31553476
Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals. PMID:31537794
Comparative transcriptomics suggest unique molecular adaptations within tardigrade lineages. PMID:31340759
Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development. PMID:30352852
Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. PMID:30351380
A rapid rate of sex-chromosome turnover and non-random transitions in true frogs. PMID:30291233
Wnt evolution and function shuffling in liberal and conservative chordate genomes. PMID:30045756
Histological Observation of Teratogenic Phenotypes Induced in Frog Embryo Assays. PMID:29896700
Specifying neural crest cells: From chromatin to morphogens and factors in between. PMID:29722151
Transcriptomics of dorso-ventral axis determination in Xenopus tropicalis. PMID:29709598
Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa. PMID:29642851
Transgenic Xenopus laevis Line for In Vivo Labeling of Nephrons within the Kidney. PMID:29642376
Chromatin Characterization in Xenopus laevis Cell-Free Egg Extracts and Embryos. PMID:29475998
Reference gene identification and validation for quantitative real-time PCR studies in developing Xenopus laevis. PMID:29323148
Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos. PMID:29286491
Genome-wide transcriptomics analysis identifies sox7 and sox18 as specifically regulated by gata4 in cardiomyogenesis. PMID:29229250
Tissue-Specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9. PMID:29187504
Xenbase: a genomic, epigenomic and transcriptomic model organism database. PMID:29059324
Role of maternal Xenopus syntabulin in germ plasm aggregation and primordial germ cell specification. PMID:29037933
Dual control of pcdh8l/PCNS expression and function in Xenopus laevis neural crest cells by adam13/33 via the transcription factors tfap2α and arid3a. PMID:28829038
Modeling Dominant and Recessive Forms of Retinitis Pigmentosa by Editing Three Rhodopsin-Encoding Genes in Xenopus Laevis Using Crispr/Cas9. PMID:28761125
Coordinating heart morphogenesis: A novel role for hyperpolarization-activated cyclic nucleotide-gated (HCN) channels during cardiogenesis in Xenopus laevis. PMID:28702127
Gene2Function: An Integrated Online Resource for Gene Function Discovery. PMID:28663344
Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates. PMID:28663133
Naming CRISPR alleles: endonuclease-mediated mutation nomenclature across species. PMID:28589392
Dissecting BMP signaling input into the gene regulatory networks driving specification of the blood stem cell lineage. PMID:28584091
Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases. PMID:28504275
A novel role of the organizer gene Goosecoid as an inhibitor of Wnt/PCP-mediated convergent extension in Xenopus and mouse. PMID:28220837
Spinal cord regeneration in Xenopus laevis. PMID:28102835
High-throughput analysis reveals novel maternal germline RNAs crucial for primordial germ cell preservation and proper migration. PMID:28096217
What we can learn from a tadpole about ciliopathies and airway diseases: Using systems biology in Xenopus to study cilia and mucociliary epithelia. PMID:28095645
Quantifying the relative contributions of different solute carriers to aggregate substrate transport. PMID:28091567
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. PMID:27940157
Reversible developmental stasis in response to nutrient availability in the Xenopus laevis central nervous system. PMID:27875263
Thyroid Hormone-Induced Activation of Notch Signaling is Required for Adult Intestinal Stem Cell Development During Xenopus Laevis Metamorphosis. PMID:27870267
CardioTF, a database of deconstructing transcriptional circuits in the heart system. PMID:27635320
Ciliary transcription factors and miRNAs precisely regulate Cp110 levels required for ciliary adhesions and ciliogenesis. PMID:27623009
N6-Methyladenosine Sequencing Highlights the Involvement of mRNA Methylation in Oocyte Meiotic Maturation and Embryo Development by Regulating Translation in Xenopus laevis. PMID:27613873
A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. PMID:27475627
Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis. PMID:27471010
Leapfrogging: primordial germ cell transplantation permits recovery of CRISPR/Cas9-induced mutations in essential genes. PMID:27385011
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Expansion of amphibian intronless interferons revises the paradigm for interferon evolution and functional diversity. PMID:27356970
Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS). PMID:27317400
Technique to Target Microinjection to the Developing Xenopus Kidney. PMID:27168375
Cell-free Xenopus egg extracts for studying DNA damage response pathways. PMID:27160070
The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery. PMID:27158779
Genome-wide identification of Wnt/β-catenin transcriptional targets during Xenopus gastrulation. PMID:27091726
ATtRACT-a database of RNA-binding proteins and associated motifs. PMID:27055826
A versatile multivariate image analysis pipeline reveals features of Xenopus extract spindles. PMID:27044897
Xenopus genomic data and browser resources. PMID:27039265
Towards the bridging of molecular genetics data across Xenopus species. PMID:26925848
Functional Cloning Using a Xenopus Oocyte Expression System. PMID:26862700
The old and new face of craniofacial research: How animal models inform human craniofacial genetic and clinical data. PMID:26808208
Identifying domains of EFHC1 involved in ciliary localization, ciliogenesis, and the regulation of Wnt signaling. PMID:26783883
Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development. PMID:26774488
Homology-driven assembly of NOn-redundant protEin sequence sets (NOmESS) for mass spectrometry. PMID:26743511
RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM(®) genes for hereditary disorders of hearing and balance. PMID:26582541
A Database of microRNA Expression Patterns in Xenopus laevis. PMID:26506012
The Xenopus ORFeome: A resource that enables functional genomics. PMID:26391338
Genome-Wide Identification and Expression of Xenopus F-Box Family of Proteins. PMID:26327321
Xenopus as a Model for GI/Pancreas Disease. PMID:26236566
Orthology for comparative genomics in the mouse genome database. PMID:26223881
Xenbase: Core features, data acquisition, and data processing. PMID:26150211
Xenopus TACC1 is a microtubule plus-end tracking protein that can regulate microtubule dynamics during embryonic development. PMID:26012630
Web resources for model organism studies. PMID:25707592 -
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
PubMed citations: 19.
19 articles citing: Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
Temporal and spatial transcriptomic dynamics across brain development in Xenopus laevis tadpoles. PMID:34751375
The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis. PMID:33087765
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. PMID:31733057
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. PMID:31651362
New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images. PMID:30157169
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. PMID:29761462
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. PMID:29700227
Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine. PMID:29402212
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM(®) genes for hereditary disorders of hearing and balance. PMID:26582541
Xenopus as a Model for GI/Pancreas Disease. PMID:26236566
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Xenbase: Core features, data acquisition, and data processing. PMID:26150211
Flow sensing in developing Xenopus laevis is disrupted by visual cues and ototoxin exposure. PMID:25380559
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. PMID:25313157
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. PMID:25140222
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384 -
Xenbase: Facilitating the Use of Xenopus to Model Human Disease
PubMed citations: 19.
19 articles citing: Xenbase: Facilitating the Use of Xenopus to Model Human Disease
A Focal Impact Model of Traumatic Brain Injury in Xenopus Tadpoles Reveals Behavioral Alterations, Neuroinflammation, and an Astroglial Response. PMID:35886924
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. PMID:35317743
Enhanced Loss of Retinoic Acid Network Genes in Xenopus laevis Achieves a Tighter Signal Regulation. PMID:35159137
Assays for Apical Constriction Using the Xenopus Model. PMID:35147955
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. PMID:34791383
The Human Disease Ontology 2022 update. PMID:34755882
Research('s) Sweet Hearts: Experimental Biomedical Models of Diabetic Cardiomyopathy. PMID:34368257
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students. PMID:34318869
Aquatic models of human ciliary diseases. PMID:33496382
Xenopus leads the way: Frogs as a pioneering model to understand the human brain. PMID:33369095
The Human Phenotype Ontology in 2021. PMID:33264411
Heart Development and Regeneration in Non-mammalian Model Organisms. PMID:33251221
Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS. PMID:33137227
A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery. PMID:32898505
Maximizing CRISPR/Cas9 phenotype penetrance applying predictive modeling of editing outcomes in Xenopus and zebrafish embryos. PMID:32887910
Blood-Brain Barrier Protein Claudin-5 Expressed in Paired Xenopus laevis Oocytes Mediates Cell-Cell Interaction. PMID:32848831
Xenopus embryos show a compensatory response following perturbation of the Notch signaling pathway. PMID:31899211
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. PMID:31733057
Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis. PMID:31254427 -
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database
PubMed citations: 16.
16 articles citing: Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. PMID:35317743
Whole-genome sequencing identifies I-SceI-mediated transgene integration sites in Xenopus tropicalis snai2:eGFP line. PMID:35171990
Assays for Apical Constriction Using the Xenopus Model. PMID:35147955
Bile Acids Gate Dopamine Transporter Mediated Currents. PMID:34957043
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. PMID:34791383
The Gene Ontology resource: enriching a GOld mine. PMID:33290552
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
Expression Changes of MHC and Other Immune Genes in Frog Skin during Ontogeny. PMID:31935873
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. PMID:31733057
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:31701156
The Many Faces of Xenopus: Xenopus laevis as a Model System to Study Wolf-Hirschhorn Syndrome. PMID:31297068
Xenopus Resources: Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support. PMID:31073289
Xenbase: Facilitating the Use of Xenopus to Model Human Disease. PMID:30863320
A liquid-like organelle at the root of motile ciliopathy. PMID:30561330
Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development. PMID:30352852
New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images. PMID:30157169 -
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
PubMed citations: 12.
12 articles citing: Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
Identification and validation of candidate risk genes in endocytic vesicular trafficking associated with esophageal atresia and tracheoesophageal fistulas. PMID:35519826
Harmonizing model organism data in the Alliance of Genome Resources. PMID:35380658
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. PMID:35317743
Gain of gene regulatory network interconnectivity at the origin of vertebrates. PMID:35263228
Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway. PMID:35132135
Type II Opsins in the Eye, the Pineal Complex and the Skin of Xenopus laevis: Using Changes in Skin Pigmentation as a Readout of Visual and Circadian Activity. PMID:35126061
Effects of lncRNA LINC01320 on Proliferation and Migration of Pancreatic Cancer Cells through Targeted Regulation of miR-324-3p. PMID:34976325
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. PMID:34791383
Functional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis. PMID:34014925
Integration of 1:1 orthology maps and updated datasets into Echinobase. PMID:34010390
The mouse Gene Expression Database (GXD): 2021 update. PMID:33104772
Identification of key microRNAs and target genes for the diagnosis of bone nonunion. PMID:32319614 -
Xenopus genomic data and browser resources
PubMed citations: 5.
5 articles citing: Xenopus genomic data and browser resources
Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate Central Nervous System. PMID:34979916
The DNA-to-cytoplasm ratio broadly activates zygotic gene expression in Xenopus. PMID:34388374
Axial Skeletal Malformations in Genetically Modified Xenopus laevis and Xenopus tropicalis. PMID:33203505
Xenbase: a genomic, epigenomic and transcriptomic model organism database. PMID:29059324
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. PMID:27940157 -
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud
PubMed citations: 3.
3 articles citing: The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. PMID:34791383
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. PMID:29761462
Xenbase: a genomic, epigenomic and transcriptomic model organism database. PMID:29059324 - http://dx.doi.org/10.1093/nar/gku956
Tags:
Tags
More detailed information about this field from each metasource.
antibody
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
bibliography
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
chromatin immunoprecipitation - dna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
differential gene expression analysis
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
differential protein expression analysis
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
disease process modeling
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic strain
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
micro rna
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
model organism
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
next generation dna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
reagent
metasource: Fairsharing.org
version: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
blast
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
frog model
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
genes
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
protocols
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
reagents
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Tags
More detailed information about this field from each metasource.
antibody
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
bibliography
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
chromatin immunoprecipitation - dna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
differential gene expression analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
differential protein expression analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
disease process modeling
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene ontology enrichment
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic strain
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
micro rna
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
model organism
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
next generation dna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
reagent
metasource: Fairsharing.orgversion: FAIRsharing.org: Xenbase; Xenopus laevis and tropicalis biology and genomics resource; DOI: https://doi.org/10.25504/FAIRsharing.jrv6wj; Last edited: March 3, 2021, 7:48 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
blast
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
frog model
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
genes
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
protocols
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
reagents
metasource: re3data.orgversion: re3data.org: Xenbase; editing status 2022-04-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3JH0X last accessed: 2022-11-04
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
ontology and terminology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
antibody bibliography chromatin immunoprecipitation - dna sequencing differential gene expression analysis differential protein expression analysis disease process modeling gene ontology enrichment gene expression gene expression genetic strain genome micro rna model organism next generation dna sequencing phenotype rna sequence reagent human and other vertebrate genomes model organisms blast frog model gene protocols reagents model organisms molecular interactions, pathways and networks gene transcripts ontology and terminology
Need help integrating and/or managing biomedical data?