Xenopus Anatomy Ontology
Names
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Xenopus Anatomy Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
XAO
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
Names
More detailed information about this field from each metasource.
Xenopus Anatomy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
XAO
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
Names
More detailed information about this field from each metasource.
Xenopus Anatomy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
XAO
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
This source may no longer be available. No known URL could be resolved successfully.
The Xenopus Anatomical Ontology (XAO) describes Xenopus anatomy and embryological development using a 'controlled vocabulary' of anatomy terms that are organized in an hierarchy with a graphical structure. XAO terms describe gene expression, and the XAO is constantly being updated in response to the latest published Xenopus research.
Description
More detailed information about this field from each metasource.
The Xenopus Anatomical Ontology (XAO) describes Xenopus anatomy and embryological development using a 'controlled vocabulary' of anatomy terms that are organized in an hierarchy with a graphical structure. XAO terms describe gene expression, and the XAO is constantly being updated in response to the latest published Xenopus research.
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
A structured, controlled vocabulary of the anatomy and development of the African clawed frogs (Xenopus laevis and tropicalis).
metasource: Biontology / Bioportalversion: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
Webpage:
http://www.xenbase.org/anatomy/xao.do?method=displayWebpage
More detailed information about this field from each metasource.
http://www.xenbase.org/anatomy/xao.do?method=display
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
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https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
An ontology for Xenopus anatomy and development
PMID: 18817563
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
PMID: 24139024
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://www.jbiomedsem.com/content/4/1/31/abstract
metasource: Biontology / Bioportal
version: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
Publications
More detailed information about this field from each metasource.
An ontology for Xenopus anatomy and development
PMID: 18817563
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
PMID: 24139024
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://www.jbiomedsem.com/content/4/1/31/abstract
metasource: Biontology / Bioportalversion: releases/2022-08-29 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/XAO
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An ontology for Xenopus anatomy and development
PubMed citations: 30.
30 articles citing: An ontology for Xenopus anatomy and development
Cellular Distribution Pattern of tjp1 (ZO-1) in Xenopus laevis Oocytes Heterologously Expressing Claudins. PMID:35737002
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
The Ontology of the Amphioxus Anatomy and Life Cycle (AMPHX). PMID:33981708
The skin microbiome of Xenopus laevis and the effects of husbandry conditions. PMID:33546771
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. PMID:33319712
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. PMID:29761462
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. PMID:29700227
Where to search top-K biomedical ontologies? PMID:29579141
Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine. PMID:29402212
COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. PMID:29083911
Xenbase: a genomic, epigenomic and transcriptomic model organism database. PMID:29059324
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. PMID:24568621
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. PMID:24139024
From ontology to semantic similarity: calculation of ontology-based semantic similarity. PMID:23533360
The Xenbase literature curation process. PMID:23303299
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
Xenbase: expansion and updates of the Xenopus model organism database. PMID:23125366
A UML profile for the OBO relation ontology. PMID:23095840
Evaluation of research in biomedical ontologies. PMID:22962340
On-line resources for Xenopus. PMID:22956109
Probing the Xenopus laevis inner ear transcriptome for biological function. PMID:22676585
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
A comparative gene expression database for invertebrates. PMID:21861937
Interoperability between phenotype and anatomy ontologies. PMID:20971987
The teleost anatomy ontology: anatomical representation for the genomics age. PMID:20547776
Xenbase: gene expression and improved integration. PMID:19884130 -
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
PubMed citations: 19.
19 articles citing: Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
Temporal and spatial transcriptomic dynamics across brain development in Xenopus laevis tadpoles. PMID:34751375
The ontology of the anatomy and development of the solitary ascidian Ciona: the swimming larva and its metamorphosis. PMID:33087765
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. PMID:31733057
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. PMID:31651362
New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images. PMID:30157169
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. PMID:29761462
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. PMID:29700227
Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine. PMID:29402212
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM(®) genes for hereditary disorders of hearing and balance. PMID:26582541
Xenopus as a Model for GI/Pancreas Disease. PMID:26236566
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Xenbase: Core features, data acquisition, and data processing. PMID:26150211
Flow sensing in developing Xenopus laevis is disrupted by visual cues and ototoxin exposure. PMID:25380559
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. PMID:25313157
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. PMID:25140222
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384 - http://www.jbiomedsem.com/content/4/1/31/abstract
Tags:
Tags
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life cycle
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
life cycle stage
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
morphology
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
life cycle
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
life cycle stage
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
morphology
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
life cycle life cycle stage morphology structure
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