Genomic changes underlying repeated niche shifts in an adaptive radiation.
PMID:35398888
Zebrafish Model-Based Assessment of Indoxyl Sulfate-Induced Oxidative Stress and Its Impact on Renal and Cardiac Development.
PMID:35204282
Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish.
PMID:34607603
ZebraShare: a new venue for rapid dissemination of zebrafish mutant data.
PMID:33954026
Gene coexpression networks reveal molecular interactions underlying cichlid jaw modularity.
PMID:33888061
The Human Phenotype Ontology in 2021.
PMID:33264411
Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility.
PMID:32106888
Zebrafish preserve global germline DNA methylation while sex-linked rDNA is amplified and demethylated during feminisation.
PMID:31311924
Insertional mutagenesis in ChordinA induced by endogenous ΔTgf2 transposon leads to bifurcation of axial skeletal systems in grass goldfish.
PMID:30858477
miRNA analysis with Prost! reveals evolutionary conservation of organ-enriched expression and post-transcriptional modifications in three-spined stickleback and zebrafish.
PMID:30850632
Antarctic blackfin icefish genome reveals adaptations to extreme environments.
PMID:30804520
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.
PMID:30576485
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish.
PMID:29764394
Evolution of caudal fin ray development and caudal fin hypural diastema complex in spotted gar, teleosts, and other neopterygian fishes.
PMID:29569346
Uncovering the regeneration strategies of zebrafish organs: a comprehensive systems biology study on heart, cerebellum, fin, and retina regeneration.
PMID:29560825
Skeletal development in the heterocercal caudal fin of spotted gar (lepisosteus oculatus) and other lepisosteiformes.
PMID:29330942
Inferring ontology graph structures using OWL reasoning.
PMID:29304741
Biotagging of Specific Cell Populations in Zebrafish Reveals Gene Regulatory Logic Encoded in the Nuclear Transcriptome.
PMID:28402863
Mapping autosomal recessive intellectual disability: combined microarray and exome sequencing identifies 26 novel candidate genes in 192 consanguineous families.
PMID:28397838
The anatomy of phenotype ontologies: principles, properties and applications.
PMID:28387809
Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource.
PMID:27903883
Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.
PMID:27855645
Analysis of the dynamic co-expression network of heart regeneration in the zebrafish.
PMID:27241320
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design.
PMID:27206491
Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish.
PMID:27189439
Investigation of the effects of estrogen on skeletal gene expression during zebrafish larval head development.
PMID:27069811
Goldfish morphology as a model for evolutionary developmental biology.
PMID:26952007
Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback.
PMID:26925837
A targeted next-generation sequencing assay for the molecular diagnosis of genetic disorders with orodental involvement.
PMID:26502894
Identification of sensory hair-cell transcripts by thiouracil-tagging in zebrafish.
PMID:26494580
The LRR receptor Islr2 is required for retinal axon routing at the vertebrate optic chiasm.
PMID:26492970
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.
PMID:26453491
Postembryonic staging of wild-type goldfish, with brief reference to skeletal systems.
PMID:26316229
Orthology for comparative genomics in the mouse genome database.
PMID:26223881
RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates.
PMID:26170238
ZFIN, The zebrafish model organism database: Updates and new directions.
PMID:26097180
The mouse gene expression database: New features and how to use them effectively.
PMID:26045019
Development and origins of zebrafish ocular vasculature.
PMID:25888280
What to compare and how: Comparative transcriptomics for Evo-Devo.
PMID:25864439
Biochemical functional predictions for protein structures of unknown or uncertain function.
PMID:25848497
Defining the gene repertoire and spatiotemporal expression profiles of adhesion G protein-coupled receptors in zebrafish.
PMID:25715737
Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos.
PMID:25697895
A gene mapping bottleneck in the translational route from zebrafish to human.
PMID:25628646
Recording field potentials from zebrafish larvae during escape responses.
PMID:25565920
Animal model of Sar1b deficiency presents lipid absorption deficits similar to Anderson disease.
PMID:25559265
Activity-dependent expression of neuronal PAS domain-containing protein 4 (npas4a) in the developing zebrafish brain.
PMID:25538572
The BioGRID interaction database: 2015 update.
PMID:25428363
Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr.
PMID:25419450
Phylostratigraphic profiles in zebrafish uncover chordate origins of the vertebrate brain.
PMID:25415965
A manual small molecule screen approaching high-throughput using zebrafish embryos.
PMID:25407322
Comparability of behavioural assays using zebrafish larvae to assess neurotoxicity.
PMID:25399529
Behavioral and proteomic analysis of stress response in zebrafish (Danio rerio).
PMID:25398274
Genenames.org: the HGNC resources in 2015.
PMID:25361968
Do fish perceive illusory motion?
PMID:25246001
Lrp13 is a novel vertebrate lipoprotein receptor that binds vitellogenins in teleost fishes.
PMID:25217480
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.
PMID:25140222
Exome sequencing identifies a recurrent de novo ZSWIM6 mutation associated with acromelic frontonasal dysostosis.
PMID:25105228
Production of haploid zebrafish embryos by in vitro fertilization.
PMID:25046024
Recent advances using zebrafish animal models for muscle disease drug discovery.
PMID:24931439
On the crucial cerebellar wound healing-related pathways and their cross-talks after traumatic brain injury in Danio rerio.
PMID:24926785
Using zebrafish to study podocyte genesis during kidney development and regeneration.
PMID:24920186
Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing.
PMID:24850832
Essential functional modules for pathogenic and defensive mechanisms in Candida albicans infections.
PMID:24757665
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation.
PMID:24578356
The origin of the bifurcated axial skeletal system in the twin-tail goldfish.
PMID:24569511
CiteAb: a searchable antibody database that ranks antibodies by the number of times they have been cited.
PMID:24528853
GOLink: Finding Cooccurring Terms across Gene Ontology Namespaces.
PMID:24524070
C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human.
PMID:24475127
Targeted transgene integration overcomes variability of position effects in zebrafish.
PMID:24449846
Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish.
PMID:24346703
PaGenBase: a pattern gene database for the global and dynamic understanding of gene function.
PMID:24312499
A mobile insulator system to detect and disrupt cis-regulatory landscapes in vertebrates.
PMID:24277716
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases.
PMID:24038354
On the reproducibility of science: unique identification of research resources in the biomedical literature.
PMID:24032093
Dynamic transcript profiling of Candida albicans infection in zebrafish: a pathogen-host interaction study.
PMID:24019870
New and TALENted genome engineering toolbox.
PMID:23948583
Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study.
PMID:23947337
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species.
PMID:23937709
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.
PMID:23935057
Embryonic development of goldfish (Carassius auratus): a model for the study of evolutionary change in developmental mechanisms by artificial selection.
PMID:23913853
Saltatory evolution of the ectodermal neural cortex gene family at the vertebrate origin.
PMID:23843192
A guide to best practices for Gene Ontology (GO) manual annotation.
PMID:23842463
Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish.
PMID:23814184
GoSynthetic database tool to analyse natural and engineered molecular processes.
PMID:23813641
A comparative analysis of transcription factor expression during metazoan embryonic development.
PMID:23799133
Pbx and Prdm1a transcription factors differentially regulate subsets of the fast skeletal muscle program in zebrafish.
PMID:23789105
Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos.
PMID:23684812
Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish.
PMID:23676078
FYPO: the fission yeast phenotype ontology.
PMID:23658422
InterMOD: integrated data and tools for the unification of model organism research.
PMID:23652793
An inducible transgene expression system for zebrafish and chick.
PMID:23633515
Integrating anatomy and function for zebrafish circuit analysis.
PMID:23630469
Systematic analysis of experimental phenotype data reveals gene functions.
PMID:23626672
Human amyloidogenic light chain proteins result in cardiac dysfunction, cell death, and early mortality in zebrafish.
PMID:23624626
Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems.
PMID:23587066
Pregnancy-associated plasma protein A (PAPP-A) modulates the early developmental rate in zebrafish independently of its proteolytic activity.
PMID:23430244
De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes.
PMID:23326453
Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork.
PMID:23284293
Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression.
PMID:23253453
A unified anatomy ontology of the vertebrate skeletal system.
PMID:23251424
The BioGRID interaction database: 2013 update.
PMID:23203989
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs.
PMID:23180791
The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion.
PMID:23180778
Genenames.org: the HGNC resources in 2013.
PMID:23161694
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more.
PMID:23161684
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish.
PMID:23104991
Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing.
PMID:23052906
Autotaxin/ENPP2 regulates oligodendrocyte differentiation in vivo in the developing zebrafish hindbrain.
PMID:22821873
Computational tools for comparative phenomics: the role and promise of ontologies.
PMID:22814867
Tissue-specific differential induction of duplicated fatty acid-binding protein genes by the peroxisome proliferator, clofibrate, in zebrafish (Danio rerio).
PMID:22776158
IMGT-ONTOLOGY 2012.
PMID:22654892
A query integrator and manager for the query web.
PMID:22531831
Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.
PMID:22434826
Generation of highly homogeneous strains of zebrafish through full sib-pair mating.
PMID:22384348
vHOG, a multispecies vertebrate ontology of homologous organs groups.
PMID:22285560
AutismKB: an evidence-based knowledgebase of autism genetics.
PMID:22139918
modMine: flexible access to modENCODE data.
PMID:22080565
zfishbook: connecting you to a world of zebrafish revertible mutants.
PMID:22067444
Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens.
PMID:22039101
The metabolic regulator PGC-1α directly controls the expression of the hypothalamic neuropeptide oxytocin.
PMID:22016516
New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models.
PMID:21987712
Transcriptomic analysis of the zebrafish inner ear points to growth hormone mediated regeneration following acoustic trauma.
PMID:21888654
GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets.
PMID:21798041