The Zebrafish Information Network
Names
More detailed information about this field from each metasource.
The Zebrafish Information Network
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
ZFIN
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
The zebrafish model organism database (formerly)
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
zfin
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
Names
More detailed information about this field from each metasource.
The Zebrafish Information Network
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
ZFIN
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
The zebrafish model organism database (formerly)
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
zfin
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.938941
Other names: ZFIN, The zebrafish model organism database (formerly), zfin
Names
More detailed information about this field from each metasource.
The Zebrafish Information Network
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
ZFIN
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
The zebrafish model organism database (formerly)
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
zfin
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.938941
The Zebrafish Information Network, ZFIN, serves as the primary community database resource for the laboratory use of zebrafish. We develop and support integrated zebrafish genetic, genomic, developmental and physiological information and link this information extensively to corresponding data in other model organism and human databases.
Description
More detailed information about this field from each metasource.
The Zebrafish Information Network, ZFIN, serves as the primary community database resource for the laboratory use of zebrafish. We develop and support integrated zebrafish genetic, genomic, developmental and physiological information and link this information extensively to corresponding data in other model organism and human databases.
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ZFIN, the Zebrafish Model Organism Database (http://zfin.org), is the central resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN curators manually curate and integrate comprehensive data involving zebrafish genes, mutants, transgenics, phenotypes, genotypes, gene expressions, morpholinos, antibodies, anatomical structures and publications. Integrated views of these data, as well as data gathered through collaborations and data exchanges, are provided through a wide selection of web-based search forms. Among the vertebrate model organisms, zebrafish are uniquely well suited for rapid and targeted generation of mutant lines. The recent rapid production of mutants and transgenic zebrafish is making management of data associated with these resources particularly important to the research community. Here, we describe recent enhancements to ZFIN aimed at improving our support for mutant and transgenic lines, including (i) enhanced mutant/transgenic search functionality; (ii) more expressive phenotype curation methods; (iii) new downloads files and archival data access; (iv) incorporation of new data loads from laboratories undertaking large-scale generation of mutant or transgenic lines and (v) new GBrowse tracks for transgenic insertions, genes with antibodies and morpholinos.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ZFIN serves as the zebrafish model organism database. The long term goals for ZFIN are a) to be the community database resource for the laboratory use of zebrafish, b) to develop and support integrated zebrafish genetic, genomic and developmental information, c) to maintain the definitive reference data sets of zebrafish research information, d) to link this information extensively to corresponding data in other model organism and human databases, e) to facilitate the use of zebrafish as a model for human biology and f) to serve the needs of the research community. ZIRC is the Zebrafish International Resource Center, an independent NIH-funded facility providing a wide range of zebrafish lines, probes and health services. ZFIN works closely with ZIRC to connect our genetic data with available probes and fish lines.
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
Central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. It manually curates comprehensive data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, anatomical structures and publications. A wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. Data formats include text, images and graphical representations.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.938941
Webpage:
https://zfin.org/Webpage
More detailed information about this field from each metasource.
https://zfin.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://zfin.org/
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
http://zfin.org
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.938941
Licence:
Name: ZFIN Terms of UseLicence name
More detailed information about this field from each metasource.
ZFIN Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Copyrights
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://wiki.zfin.org/display/general/WARRANTY+AND+LIABILITY+DISCLAIMER%2C+OWNERSHIP%2C+AND+LIMITS+ON+USE
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://zfin.org/warranty.html
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
Publications:
(10)
Publications
More detailed information about this field from each metasource.
ZFIN: enhancements and updates to the Zebrafish Model Organism Database
PMID: 21036866
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics
PMID: 23074187
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network: the zebrafish model organism database
PMID: 16381936
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
PMID: 17991680
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
PMID: 30407545
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network (ZFIN): the zebrafish model organism database
PMID: 12519991
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Zebrafish in the Net
PMID: 10354586
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Exploring zebrafish genomic, functional and phenotypic data using ZFIN
PMID: 20836073
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Data extraction, transformation, and dissemination through ZFIN
PMID: 21924170
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://doi.org/10.1093/nar/gkaa1010
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
ZFIN: enhancements and updates to the Zebrafish Model Organism Database
PMID: 21036866
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics
PMID: 23074187
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network: the zebrafish model organism database
PMID: 16381936
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
PMID: 17991680
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
PMID: 30407545
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Zebrafish Information Network (ZFIN): the zebrafish model organism database
PMID: 12519991
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Zebrafish in the Net
PMID: 10354586
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Exploring zebrafish genomic, functional and phenotypic data using ZFIN
PMID: 20836073
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Data extraction, transformation, and dissemination through ZFIN
PMID: 21924170
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://doi.org/10.1093/nar/gkaa1010
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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ZFIN: enhancements and updates to the Zebrafish Model Organism Database
PubMed citations: 123.
123 articles citing: ZFIN: enhancements and updates to the Zebrafish Model Organism Database
Genomic changes underlying repeated niche shifts in an adaptive radiation. PMID:35398888
Zebrafish Model-Based Assessment of Indoxyl Sulfate-Induced Oxidative Stress and Its Impact on Renal and Cardiac Development. PMID:35204282
Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish. PMID:34607603
ZebraShare: a new venue for rapid dissemination of zebrafish mutant data. PMID:33954026
Gene coexpression networks reveal molecular interactions underlying cichlid jaw modularity. PMID:33888061
The Human Phenotype Ontology in 2021. PMID:33264411
Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility. PMID:32106888
Zebrafish preserve global germline DNA methylation while sex-linked rDNA is amplified and demethylated during feminisation. PMID:31311924
Insertional mutagenesis in ChordinA induced by endogenous ΔTgf2 transposon leads to bifurcation of axial skeletal systems in grass goldfish. PMID:30858477
miRNA analysis with Prost! reveals evolutionary conservation of organ-enriched expression and post-transcriptional modifications in three-spined stickleback and zebrafish. PMID:30850632
Antarctic blackfin icefish genome reveals adaptations to extreme environments. PMID:30804520
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. PMID:30576485
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish. PMID:29764394
Evolution of caudal fin ray development and caudal fin hypural diastema complex in spotted gar, teleosts, and other neopterygian fishes. PMID:29569346
Uncovering the regeneration strategies of zebrafish organs: a comprehensive systems biology study on heart, cerebellum, fin, and retina regeneration. PMID:29560825
Skeletal development in the heterocercal caudal fin of spotted gar (lepisosteus oculatus) and other lepisosteiformes. PMID:29330942
Inferring ontology graph structures using OWL reasoning. PMID:29304741
Biotagging of Specific Cell Populations in Zebrafish Reveals Gene Regulatory Logic Encoded in the Nuclear Transcriptome. PMID:28402863
Mapping autosomal recessive intellectual disability: combined microarray and exome sequencing identifies 26 novel candidate genes in 192 consanguineous families. PMID:28397838
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource. PMID:27903883
Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building. PMID:27855645
Analysis of the dynamic co-expression network of heart regeneration in the zebrafish. PMID:27241320
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish. PMID:27189439
Investigation of the effects of estrogen on skeletal gene expression during zebrafish larval head development. PMID:27069811
Goldfish morphology as a model for evolutionary developmental biology. PMID:26952007
Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PMID:26925837
A targeted next-generation sequencing assay for the molecular diagnosis of genetic disorders with orodental involvement. PMID:26502894
Identification of sensory hair-cell transcripts by thiouracil-tagging in zebrafish. PMID:26494580
The LRR receptor Islr2 is required for retinal axon routing at the vertebrate optic chiasm. PMID:26492970
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants. PMID:26453491
Postembryonic staging of wild-type goldfish, with brief reference to skeletal systems. PMID:26316229
Orthology for comparative genomics in the mouse genome database. PMID:26223881
RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates. PMID:26170238
ZFIN, The zebrafish model organism database: Updates and new directions. PMID:26097180
The mouse gene expression database: New features and how to use them effectively. PMID:26045019
Development and origins of zebrafish ocular vasculature. PMID:25888280
What to compare and how: Comparative transcriptomics for Evo-Devo. PMID:25864439
Biochemical functional predictions for protein structures of unknown or uncertain function. PMID:25848497
Defining the gene repertoire and spatiotemporal expression profiles of adhesion G protein-coupled receptors in zebrafish. PMID:25715737
Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos. PMID:25697895
A gene mapping bottleneck in the translational route from zebrafish to human. PMID:25628646
Recording field potentials from zebrafish larvae during escape responses. PMID:25565920
Animal model of Sar1b deficiency presents lipid absorption deficits similar to Anderson disease. PMID:25559265
Activity-dependent expression of neuronal PAS domain-containing protein 4 (npas4a) in the developing zebrafish brain. PMID:25538572
The BioGRID interaction database: 2015 update. PMID:25428363
Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr. PMID:25419450
Phylostratigraphic profiles in zebrafish uncover chordate origins of the vertebrate brain. PMID:25415965
A manual small molecule screen approaching high-throughput using zebrafish embryos. PMID:25407322
Comparability of behavioural assays using zebrafish larvae to assess neurotoxicity. PMID:25399529
Behavioral and proteomic analysis of stress response in zebrafish (Danio rerio). PMID:25398274
Genenames.org: the HGNC resources in 2015. PMID:25361968
Do fish perceive illusory motion? PMID:25246001
Lrp13 is a novel vertebrate lipoprotein receptor that binds vitellogenins in teleost fishes. PMID:25217480
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. PMID:25140222
Exome sequencing identifies a recurrent de novo ZSWIM6 mutation associated with acromelic frontonasal dysostosis. PMID:25105228
Production of haploid zebrafish embryos by in vitro fertilization. PMID:25046024
Recent advances using zebrafish animal models for muscle disease drug discovery. PMID:24931439
On the crucial cerebellar wound healing-related pathways and their cross-talks after traumatic brain injury in Danio rerio. PMID:24926785
Using zebrafish to study podocyte genesis during kidney development and regeneration. PMID:24920186
Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing. PMID:24850832
Essential functional modules for pathogenic and defensive mechanisms in Candida albicans infections. PMID:24757665
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation. PMID:24578356
The origin of the bifurcated axial skeletal system in the twin-tail goldfish. PMID:24569511
CiteAb: a searchable antibody database that ranks antibodies by the number of times they have been cited. PMID:24528853
GOLink: Finding Cooccurring Terms across Gene Ontology Namespaces. PMID:24524070
C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human. PMID:24475127
Targeted transgene integration overcomes variability of position effects in zebrafish. PMID:24449846
Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish. PMID:24346703
PaGenBase: a pattern gene database for the global and dynamic understanding of gene function. PMID:24312499
A mobile insulator system to detect and disrupt cis-regulatory landscapes in vertebrates. PMID:24277716
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. PMID:24038354
On the reproducibility of science: unique identification of research resources in the biomedical literature. PMID:24032093
Dynamic transcript profiling of Candida albicans infection in zebrafish: a pathogen-host interaction study. PMID:24019870
New and TALENted genome engineering toolbox. PMID:23948583
Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study. PMID:23947337
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species. PMID:23937709
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research. PMID:23935057
Embryonic development of goldfish (Carassius auratus): a model for the study of evolutionary change in developmental mechanisms by artificial selection. PMID:23913853
Saltatory evolution of the ectodermal neural cortex gene family at the vertebrate origin. PMID:23843192
A guide to best practices for Gene Ontology (GO) manual annotation. PMID:23842463
Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish. PMID:23814184
GoSynthetic database tool to analyse natural and engineered molecular processes. PMID:23813641
A comparative analysis of transcription factor expression during metazoan embryonic development. PMID:23799133
Pbx and Prdm1a transcription factors differentially regulate subsets of the fast skeletal muscle program in zebrafish. PMID:23789105
Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. PMID:23684812
Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish. PMID:23676078
FYPO: the fission yeast phenotype ontology. PMID:23658422
InterMOD: integrated data and tools for the unification of model organism research. PMID:23652793
An inducible transgene expression system for zebrafish and chick. PMID:23633515
Integrating anatomy and function for zebrafish circuit analysis. PMID:23630469
Systematic analysis of experimental phenotype data reveals gene functions. PMID:23626672
Human amyloidogenic light chain proteins result in cardiac dysfunction, cell death, and early mortality in zebrafish. PMID:23624626
Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems. PMID:23587066
Pregnancy-associated plasma protein A (PAPP-A) modulates the early developmental rate in zebrafish independently of its proteolytic activity. PMID:23430244
De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes. PMID:23326453
Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork. PMID:23284293
Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression. PMID:23253453
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
The BioGRID interaction database: 2013 update. PMID:23203989
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791
The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion. PMID:23180778
Genenames.org: the HGNC resources in 2013. PMID:23161694
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. PMID:23161684
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish. PMID:23104991
Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing. PMID:23052906
Autotaxin/ENPP2 regulates oligodendrocyte differentiation in vivo in the developing zebrafish hindbrain. PMID:22821873
Computational tools for comparative phenomics: the role and promise of ontologies. PMID:22814867
Tissue-specific differential induction of duplicated fatty acid-binding protein genes by the peroxisome proliferator, clofibrate, in zebrafish (Danio rerio). PMID:22776158
IMGT-ONTOLOGY 2012. PMID:22654892
A query integrator and manager for the query web. PMID:22531831
Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report. PMID:22434826
Generation of highly homogeneous strains of zebrafish through full sib-pair mating. PMID:22384348
vHOG, a multispecies vertebrate ontology of homologous organs groups. PMID:22285560
AutismKB: an evidence-based knowledgebase of autism genetics. PMID:22139918
modMine: flexible access to modENCODE data. PMID:22080565
zfishbook: connecting you to a world of zebrafish revertible mutants. PMID:22067444
Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens. PMID:22039101
The metabolic regulator PGC-1α directly controls the expression of the hypothalamic neuropeptide oxytocin. PMID:22016516
New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models. PMID:21987712
Transcriptomic analysis of the zebrafish inner ear points to growth hormone mediated regeneration following acoustic trauma. PMID:21888654
GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets. PMID:21798041 -
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics
PubMed citations: 123.
123 articles citing: ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics
Appetite regulating genes in zebrafish gut; a gene expression study. PMID:35853004
Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database. PMID:35735230
Reduced physiological plasticity in a fish adapted to stable temperatures. PMID:35617428
MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses. PMID:35614082
TFAP2 paralogs facilitate chromatin access for MITF at pigmentation and cell proliferation genes. PMID:35580127
Convergent evolution of polyploid genomes from across the eukaryotic tree of life. PMID:35451464
Genomic changes underlying repeated niche shifts in an adaptive radiation. PMID:35398888
Elevated Hoxb5b Expands Vagal Neural Crest Pool and Blocks Enteric Neuronal Development in Zebrafish. PMID:35174164
Single-cell Iso-Sequencing enables rapid genome annotation for scRNAseq analysis. PMID:35143654
Tetraspanin Cd9b and Cxcl12a/Cxcr4b have a synergistic effect on the control of collective cell migration. PMID:34847198
A Meta-Analysis of Bioelectric Data in Cancer, Embryogenesis, and Regeneration. PMID:34476377
Modeling Parkinson's Disease: Not Only Rodents? PMID:34421573
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students. PMID:34318869
Transcriptional study reveals a potential leptin-dependent gene regulatory network in zebrafish brain. PMID:34236575
Zebrafish Heart Failure Models. PMID:34095129
Rapid Generation of Pigment Free, Immobile Zebrafish Embryos and Larvae in Any Genetic Background Using CRISPR-Cas9 dgRNPs. PMID:34077687
Knockdown of hspg2 is associated with abnormal mandibular joint formation and neural crest cell dysfunction in zebrafish. PMID:33678174
Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data. PMID:33633771
Comparative Transcriptome Analysis During the Seven Developmental Stages of Channel Catfish (Ictalurus punctatus) and Tra Catfish (Pangasianodon hypophthalmus) Provides Novel Insights for Terrestrial Adaptation. PMID:33552125
Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior. PMID:33357413
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Selective Histone Deacetylase 6 Inhibitors Restore Cone Photoreceptor Vision or Outer Segment Morphology in Zebrafish and Mouse Models of Retinal Blindness. PMID:32984302
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data. PMID:32972997
SLC20A1 Is Involved in Urinary Tract and Urorectal Development. PMID:32850778
Synchrotron microCT imaging of soft tissue in juvenile zebrafish reveals retinotectal projections. PMID:32733117
Genomic Analysis of the Only Blind Cichlid Reveals Extensive Inactivation in Eye and Pigment Formation Genes. PMID:32653909
An Improved Phenotype-Driven Tool for Rare Mendelian Variant Prioritization: Benchmarking Exomiser on Real Patient Whole-Exome Data. PMID:32340307
Wnt-PLC-IP3-Connexin-Ca2+ axis maintains ependymal motile cilia in zebrafish spinal cord. PMID:32312952
The lasting after-effects of an ancient polyploidy on the genomes of teleosts. PMID:32298330
A unified nomenclature for vertebrate olfactory receptors. PMID:32295537
Genomic Access to the Diversity of Fishes. PMID:31975176
The peptide transporter 1a of the zebrafish Danio rerio, an emerging model in nutrigenomics and nutrition research: molecular characterization, functional properties, and expression analysis. PMID:31890051
Transcriptional study of appetite regulating genes in the brain of zebrafish (Danio rerio) with impaired leptin signalling. PMID:31882937
A systems biology approach reveals neuronal and muscle developmental defects after chronic exposure to ionising radiation in zebrafish. PMID:31882844
A single-cell transcriptome atlas for zebrafish development. PMID:31782996
A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress. PMID:31727854
The Grass Carp Genomic Visualization Database (GCGVD): an informational platform for genome biology of grass carp. PMID:31592084
Zebrafish: Housing and husbandry recommendations. PMID:31510859
Comparative transcriptomic analysis and structure prediction of novel Newt proteins. PMID:31419228
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. PMID:31328773
Are model organisms representative for climate change research? Testing thermal tolerance in wild and laboratory zebrafish populations. PMID:31249690
On the traces of tcf12: Investigation of the gene expression pattern during development and cranial suture patterning in zebrafish (Danio rerio). PMID:31188878
Development of a Zebrafish S1500+ Sentinel Gene Set for High-Throughput Transcriptomics. PMID:31188086
Map and model-moving from observation to prediction in toxicogenomics. PMID:31140561
modEnrichr: a suite of gene set enrichment analysis tools for model organisms. PMID:31069376
Insights into regeneration tool box: An animal model approach. PMID:30986388
ChlamBase: a curated model organism database for the Chlamydia research community. PMID:30985891
Gene expression imputation across multiple brain regions provides insights into schizophrenia risk. PMID:30911161
Acute exposure to 4-OH-A, not PCB1254, alters brain aromatase activity but does not adversely affect growth in zebrafish. PMID:30889543
An interaction-based model for neuropsychiatric features of copy-number variants. PMID:30653500
Non-pathological Chondrogenic Features of Valve Interstitial Cells in Normal Adult Zebrafish. PMID:30620237
Ensembl variation resources. PMID:30576484
B Chromosomes of the Asian Seabass (Lates calcarifer) Contribute to Genome Variations at the Level of Individuals and Populations. PMID:30241368
Functional and phylogenetic characterization of noncanonical vitamin B12-binding proteins in zebrafish suggests involvement in cobalamin transport. PMID:30237171
Model organism data evolving in support of translational medicine. PMID:30224793
Systematic pharmacological screens uncover novel pathways involved in cerebral cavernous malformations. PMID:30181117
Wnt evolution and function shuffling in liberal and conservative chordate genomes. PMID:30045756
Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation. PMID:29942074
Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag. PMID:29765956
Using ZFIN: Data Types, Organization, and Retrieval. PMID:29761463
Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars. PMID:29644996
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. PMID:29608178
An optimised pipeline for parallel image-based quantification of gene expression and genotyping after in situ hybridisation. PMID:29535102
Compound heterozygous loss-of-function mutations in KIF20A are associated with a novel lethal congenital cardiomyopathy in two siblings. PMID:29357359
The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish. PMID:29304078
The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna. PMID:29298680
Histone Lysine Methylases and Demethylases in the Landscape of Human Developmental Disorders. PMID:29276005
The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations. PMID:29220445
A high-resolution mRNA expression time course of embryonic development in zebrafish. PMID:29144233
Functional and evolutionary insights from the Ciona notochord transcriptome. PMID:28928284
Development of zebrafish medulloblastoma-like PNET model by TALEN-mediated somatic gene inactivation. PMID:28903419
Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN. PMID:28838067
In Vivo Regulation of the Zebrafish Endoderm Progenitor Niche by T-Box Transcription Factors. PMID:28658625
Naming CRISPR alleles: endonuclease-mediated mutation nomenclature across species. PMID:28589392
ZEBRAFISH AS AN IN VIVO MODEL FOR SUSTAINABLE CHEMICAL DESIGN. PMID:28461781
Semantic prioritization of novel causative genomic variants. PMID:28414800
Defining the transcriptomic landscape of the developing enteric nervous system and its cellular environment. PMID:28403821
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. PMID:28365742
The Transcriptome of the Zebrafish Embryo After Chemical Exposure: A Meta-Analysis. PMID:28329862
A GCSFR/CSF3R zebrafish mutant models the persistent basal neutrophil deficiency of severe congenital neutropenia. PMID:28281657
TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF. PMID:28249010
WNK Kinases in Development and Disease. PMID:28236964
Protein Bioinformatics Databases and Resources. PMID:28150231
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource. PMID:27903883
The mouse Gene Expression Database (GXD): 2017 update. PMID:27899677
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. PMID:27899582
Ensembl 2017. PMID:27899575
A scientist's guide for submitting data to ZFIN. PMID:27443940
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
An Experimental Model for Simultaneous Study of Migration of Cell Fragments, Single Cells, and Cell Sheets. PMID:27271908
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Pleiotropic effect of thyroid hormones on gene expression in fish as exemplified from the blue bream Ballerus ballerus (Cyprinidae): Results of transcriptomic analysis. PMID:27193715
Capturing phenotypes for precision medicine. PMID:27148566
Vaxar: A Web-Based Database of Laboratory Animal Responses to Vaccinations and Its Application in the Meta-Analysis of Different Animal Responses to Tuberculosis Vaccinations. PMID:27053566
A multi-ethnic genome-wide association study identifies novel loci for non-syndromic cleft lip with or without cleft palate on 2p24.2, 17q23 and 19q13. PMID:27033726
Advancements in zebrafish applications for 21st century toxicology. PMID:27016469
Comparative analysis of the human and zebrafish kinomes: focus on the development of kinase inhibitors. PMID:27011661
A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation. PMID:26823433
Accelerating Adverse Outcome Pathway Development Using Publicly Available Data Sources. PMID:26809562
The digital revolution in phenotyping. PMID:26420780
Use of model organism and disease databases to support matchmaking for human disease gene discovery. PMID:26269093
Cross-organism analysis using InterMine. PMID:26097192
ZFIN, The zebrafish model organism database: Updates and new directions. PMID:26097180
Gene Perturbation Atlas (GPA): a single-gene perturbation repository for characterizing functional mechanisms of coding and non-coding genes. PMID:26039571
Spatial reconstruction of single-cell gene expression data. PMID:25867923
Web resources for model organism studies. PMID:25707592
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. PMID:25428351
A manual small molecule screen approaching high-throughput using zebrafish embryos. PMID:25407322
Clinical interpretation of CNVs with cross-species phenotype data. PMID:25280750
A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo. PMID:25111899
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384
Representing kidney development using the gene ontology. PMID:24941002
Interpreting human genetic variation with in vivo zebrafish assays. PMID:24887202
Commentary on Shimoyama et al. (2012): three ontologies to define phenotype measurement data. PMID:24795755
Phenotype ontologies and cross-species analysis for translational research. PMID:24699242
Rich annotation of DNA sequencing variants by leveraging the Ensembl Variant Effect Predictor with plugins. PMID:24626529
The Vertebrate Genome Annotation browser 10 years on. PMID:24316575
Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. PMID:24162064
GEISHA: an evolving gene expression resource for the chicken embryo. PMID:24150938
The mouse pathology ontology, MPATH; structure and applications. PMID:24033988
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. PMID:23660285
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. PMID:23203983 -
The Zebrafish Information Network: the zebrafish model organism database
PubMed citations: 122.
122 articles citing: The Zebrafish Information Network: the zebrafish model organism database
Oxidative Stress and AKT-Associated Angiogenesis in a Zebrafish Model and Its Potential Application for Withanolides. PMID:35326412
Genome-wide association analysis of adaptation to oxygen stress in Nile tilapia (Oreochromis niloticus). PMID:34107887
DEEPsc: A Deep Learning-Based Map Connecting Single-Cell Transcriptomics and Spatial Imaging Data. PMID:33833776
Exploratory Factor Analysis of Rainbow Trout Serum Chemistry Variables. PMID:33562845
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. PMID:33319712
Diversity of gut microbiomes in marine fishes is shaped by host-related factors. PMID:33084100
The Melanin-Concentrating Hormone (MCH) System: A Tale of Two Peptides. PMID:31849590
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. PMID:30407545
Using ZFIN: Data Types, Organization, and Retrieval. PMID:29761463
De novo large rare copy-number variations contribute to conotruncal heart disease in Chinese patients. PMID:29263819
Role of WNT10A in failure of tooth development in humans and zebrafish. PMID:29178643
Whole exome sequencing in 342 congenital cardiac left sided lesion cases reveals extensive genetic heterogeneity and complex inheritance patterns. PMID:29089047
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates. PMID:28981708
Zebrafish Get Connected: Investigating Neurotransmission Targets and Alterations in Chemical Toxicity. PMID:28730152
Multi-Shell Nano-CarboScavengers for Petroleum Spill Remediation. PMID:28157204
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. PMID:27899582
Histological and Transcriptomic Changes in Male Zebrafish Testes Due to Early Life Exposure to Low Level 2,3,7,8-Tetrachlorodibenzo-p-Dioxin. PMID:27618130
Identification of p53-target genes in Danio rerio. PMID:27581768
Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs. PMID:26799215
Ensembl 2016. PMID:26687719
A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. PMID:26635538
Database resources of the National Center for Biotechnology Information. PMID:26615191
Investigation of Pathogenic Genes in Chinese sporadic Hypertrophic Cardiomyopathy Patients by Whole Exome Sequencing. PMID:26573135
Regulatory variant in FZD6 gene contributes to nonsyndromic cleft lip and palate in an African-American family. PMID:26436110
The digital revolution in phenotyping. PMID:26420780
ZFIN, The zebrafish model organism database: Updates and new directions. PMID:26097180
A Novel Method for Rearing Zebrafish by Using Freshwater Rotifers (Brachionus calyciflorus). PMID:25938499
Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome. PMID:25908307
Linking gene expression to phenotypes via pathway information. PMID:25901272
A family of transposable elements co-opted into developmental enhancers in the mouse neocortex. PMID:25806706
Chemokine-guided cell migration and motility in zebrafish development. PMID:25762592
Database resources of the National Center for Biotechnology Information. PMID:25398906
Itch is required for lateral line development in zebrafish. PMID:25369329
Efficient homologous recombination-mediated genome engineering in zebrafish using TALE nucleases. PMID:25249466
Inductive matrix completion for predicting gene-disease associations. PMID:24932006
Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period. PMID:24709821
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. PMID:24568621
POMO--Plotting Omics analysis results for Multiple Organisms. PMID:24365393
Database resources of the National Center for Biotechnology Information. PMID:24259429
The medaka mutation tintachina sheds light on the evolution of V-ATPase B subunits in vertebrates. PMID:24225653
Toward knowledge support for analysis and interpretation of complex traits. PMID:24079802
Tmem88a mediates GATA-dependent specification of cardiomyocyte progenitors by restricting WNT signaling. PMID:23903195
Prediction of gene-phenotype associations in humans, mice, and plants using phenologs. PMID:23800157
Estrogen regulation of microRNAs, target genes, and microRNA expression associated with vitellogenesis in the zebrafish. PMID:23767875
Molecular genetic testing and the future of clinical genomics. PMID:23681062
Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets. PMID:23656298
Prediction and validation of gene-disease associations using methods inspired by social network analyses. PMID:23650495
Characterization of the calcium binding protein family in zebrafish. PMID:23341937
Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression. PMID:23253453
Database resources of the National Center for Biotechnology Information. PMID:23193264
Context-dependent proangiogenic function of bone morphogenetic protein signaling is mediated by disabled homolog 2. PMID:22898784
Craniofacial abnormalities result from knock down of nonsyndromic clefting gene, crispld2, in zebrafish. PMID:22887593
Functional divergence of gene duplicates - a domain-centric view. PMID:22839301
Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. PMID:22593555
Transcriptional enhancers in protein-coding exons of vertebrate developmental genes. PMID:22567096
Zebrafish HSF4: a novel protein that shares features of both HSF1 and HSF4 of mammals. PMID:22528049
Nanog-like regulates endoderm formation through the Mxtx2-Nodal pathway. PMID:22421047
Gucy2f zebrafish knockdown--a model for Gucy2d-related leber congenital amaurosis. PMID:22378290
Database resources of the National Center for Biotechnology Information. PMID:22140104
zfishbook: connecting you to a world of zebrafish revertible mutants. PMID:22067444
Notochordal cells in the adult intervertebral disc: new perspective on an old question. PMID:21967331
A comparative gene expression database for invertebrates. PMID:21861937
Evolutionary plasticity of segmentation clock networks. PMID:21652651
Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish. PMID:21637758
Ontogeny of globin expression in zebrafish (Danio rerio). PMID:21614507
The origins, evolution, and functional potential of alternative splicing in vertebrates. PMID:21551269
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. PMID:21472436
Major isoform of zebrafish P0 is a 23.5 kDa myelin glycoprotein expressed in selected white matter tracts of the central nervous system. PMID:21452240
Zebrafish for the study of the biological effects of nicotine. PMID:21385906
Functional and developmental expression of a zebrafish Kir1.1 (ROMK) potassium channel homologue Kcnj1. PMID:21262879
A unique chromatin signature uncovers early developmental enhancers in humans. PMID:21160473
Hedgehog signaling is required at multiple stages of zebrafish tooth development. PMID:21118524
Constructing a fish metabolic network model. PMID:21114829
Database resources of the National Center for Biotechnology Information. PMID:21097890
Understanding kidney disease: toward the integration of regulatory networks across species. PMID:21044762
ZFIN: enhancements and updates to the Zebrafish Model Organism Database. PMID:21036866
Automatic, context-specific generation of Gene Ontology slims. PMID:20929524
Conserved proximal promoter elements control repulsive guidance molecule c/hemojuvelin (Hfe2) gene transcription in skeletal muscle. PMID:20858542
Sustainable digital infrastructure. Although databases and other online resources have become a central tool for biological research, their long-term support and maintenance is far from secure. PMID:20847740
Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example. PMID:20626891
Mib-Jag1-Notch signalling regulates patterning and structural roles of the notochord by controlling cell-fate decisions. PMID:20573700
Morphological and molecular evidence for functional organization along the rostrocaudal axis of the adult zebrafish intestine. PMID:20565988
The teleost anatomy ontology: anatomical representation for the genomics age. PMID:20547776
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy. PMID:20519284
Metadata matters: access to image data in the real world. PMID:20513764
The importance of being cis: evolution of orthologous fish and mammalian enhancer activity. PMID:20494938
Molecular signaling in zebrafish development and the vertebrate phylotypic period. PMID:20433455
Pre-gastrula expression of zebrafish extraembryonic genes. PMID:20423468
Bug22p, a conserved centrosomal/ciliary protein also present in higher plants, is required for an effective ciliary stroke in Paramecium. PMID:20118210
A manual collection of Syt, Esyt, Rph3a, Rph3al, Doc2, and Dblc2 genes from 46 metazoan genomes--an open access resource for neuroscience and evolutionary biology. PMID:20078875
Database resources of the National Center for Biotechnology Information. PMID:19910364
A systematic approach to identify functional motifs within vertebrate developmental enhancers. PMID:19850031
More than a decade of developmental gene expression atlases: where are we now? PMID:19822576
Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets. PMID:19779614
Molecular biology, genetics and biochemistry of the repulsive guidance molecule family. PMID:19698085
Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. PMID:19439512
A primer for morpholino use in zebrafish. PMID:19374550
Coherent but overlapping expression of microRNAs and their targets during vertebrate development. PMID:19240133
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. PMID:19208196
Developmental constraints on vertebrate genome evolution. PMID:19096706
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. PMID:18953041
Database resources of the National Center for Biotechnology Information. PMID:18940862
cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation. PMID:18718943
Ribonuclease A homologues of the zebrafish: polymorphism, crystal structures of two representatives and their evolutionary implications. PMID:18508078
Using imaging and genetics in zebrafish to study developing spinal circuits in vivo. PMID:18383546
Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif. PMID:18334026
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees. PMID:18269696
Analysis of the zebrafish proteome during embryonic development. PMID:18212345
Gene Ontology annotation quality analysis in model eukaryotes. PMID:18187504
Zebrafish in hematology: sushi or science? PMID:18182572
A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information. PMID:18179718
Database resources of the National Center for Biotechnology Information. PMID:18045790
The vertebrate genome annotation (Vega) database. PMID:18003653
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. PMID:17991680
Xenbase: a Xenopus biology and genomics resource. PMID:17984085
The HGNC Database in 2008: a resource for the human genome. PMID:17984084
4DXpress: a database for cross-species expression pattern comparisons. PMID:17916571
RAD marker microarrays enable rapid mapping of zebrafish mutations. PMID:17553171
A major zebrafish polymorphism resource for genetic mapping. PMID:17428331
Database resources of the National Center for Biotechnology Information. PMID:17170002
Organelle DB: an updated resource of eukaryotic protein localization and function. PMID:17130152
PhenomicDB: a new cross-species genotype/phenotype resource. PMID:16982638 -
The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
PubMed citations: 89.
89 articles citing: The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes
Zebrafish information network, the knowledgebase for Danio rerio research. PMID:35166825
FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example. PMID:34823588
Quantitative spatial and temporal assessment of regulatory element activity in zebrafish. PMID:34796872
Activation of WNT signaling restores the facial deficits in a zebrafish with defects in cholesterol metabolism. PMID:33197123
Genetic architecture and genomic selection of female reproduction traits in rainbow trout. PMID:32795250
The Musculoskeletal Knowledge Portal: Making Omics Data Useful to the Broader Scientific Community. PMID:32777102
Diverse Signaling by TGFβ Isoforms in Response to Focal Injury is Associated with Either Retinal Regeneration or Reactive Gliosis. PMID:32219603
Baicalin Ameliorates Dexamethasone-Induced Osteoporosis by Regulation of the RANK/RANKL/OPG Signaling Pathway. PMID:32021104
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. PMID:30407545
Model organism data evolving in support of translational medicine. PMID:30224793
Using ZFIN: Data Types, Organization, and Retrieval. PMID:29761463
Functional enrichment analysis based on long noncoding RNA associations. PMID:29745842
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Identification of common non-coding variants at 1p22 that are functional for non-syndromic orofacial clefting. PMID:28287101
An Experimental Model for Simultaneous Study of Migration of Cell Fragments, Single Cells, and Cell Sheets. PMID:27271908
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Advancements in zebrafish applications for 21st century toxicology. PMID:27016469
2C-Cas9: a versatile tool for clonal analysis of gene function. PMID:26957310
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. PMID:26500251
Cross-organism analysis using InterMine. PMID:26097192
ZFIN, The zebrafish model organism database: Updates and new directions. PMID:26097180
A manual small molecule screen approaching high-throughput using zebrafish embryos. PMID:25407322
iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum. PMID:25378303
Genes and signaling networks regulated during zebrafish optic vesicle morphogenesis. PMID:25266257
The Drosophila anatomy ontology. PMID:24139062
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. PMID:24139024
The Drosophila phenotype ontology. PMID:24138933
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species. PMID:23937709
Tmem88a mediates GATA-dependent specification of cardiomyocyte progenitors by restricting WNT signaling. PMID:23903195
A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design. PMID:23867016
Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets. PMID:23656298
Hierarchical approaches for systems modeling in cardiac development. PMID:23463736
Can zebrafish be used as animal model to study Alzheimer's disease? PMID:23383380
Inhibition of the Pim1 oncogene results in diminished visual function. PMID:23300608
Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity. PMID:23285103
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
Using genome-wide expression profiling to define gene networks relevant to the study of complex traits: from RNA integrity to network topology. PMID:23195313
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. PMID:23046642
Context-dependent proangiogenic function of bone morphogenetic protein signaling is mediated by disabled homolog 2. PMID:22898784
Computational tools for comparative phenomics: the role and promise of ontologies. PMID:22814867
Gucy2f zebrafish knockdown--a model for Gucy2d-related leber congenital amaurosis. PMID:22378290
MouseFinder: Candidate disease genes from mouse phenotype data. PMID:22331800
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
Using ontology databases for scalable query answering, inconsistency detection, and data integration. PMID:22163378
Comparative Structures and Evolution of Vertebrate Carboxyl Ester Lipase (CEL) Genes and Proteins with a Major Role in Reverse Cholesterol Transport. PMID:22162806
GeneWeaver: a web-based system for integrative functional genomics. PMID:22080549
Developing a community-based genetic nomenclature for anole lizards. PMID:22077994
The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata. PMID:22064862
Improving ontologies by automatic reasoning and evaluation of logical definitions. PMID:22032770
Modeling anxiety using adult zebrafish: a conceptual review. PMID:21843537
PhenomeNET: a whole-phenome approach to disease gene discovery. PMID:21737429
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. PMID:21555364
Ontologies and standards in bioscience research: for machine or for human. PMID:21519400
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. PMID:21261995
Human cardiomyopathy mutations induce myocyte hyperplasia and activate hypertrophic pathways during cardiogenesis in zebrafish. PMID:21245263
An ontology-based comparative anatomy information system. PMID:21146377
Ensembl 2011. PMID:21045057
Understanding kidney disease: toward the integration of regulatory networks across species. PMID:21044762
The impact of gene expression regulation on evolution of extracellular signaling pathways. PMID:20935258
genenames.org: the HGNC resources in 2011. PMID:20929869
Exploring zebrafish genomic, functional and phenotypic data using ZFIN. PMID:20836073
A standard variation file format for human genome sequences. PMID:20796305
The teleost anatomy ontology: anatomical representation for the genomics age. PMID:20547776
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature. PMID:20505755
Phenex: ontological annotation of phenotypic diversity. PMID:20463926
Phenotype ontologies for mouse and man: bridging the semantic gap. PMID:20427557
The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. PMID:20157477
Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data. PMID:20089164
Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape. PMID:20087342
Integrating phenotype ontologies across multiple species. PMID:20064205
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. PMID:20015972
Linking human diseases to animal models using ontology-based phenotype annotation. PMID:19956802
NBRP databases: databases of biological resources in Japan. PMID:19934255
A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo. PMID:19880500
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. PMID:19773420
EMAGE mouse embryo spatial gene expression database: 2010 update. PMID:19767607
Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes. PMID:19698106
What we can learn about Escherichia coli through application of Gene Ontology. PMID:19576778
myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks. PMID:19500400
A novel microdeletion syndrome involving 5q14.3-q15: clinical and molecular cytogenetic characterization of three patients. PMID:19471318
A primer for morpholino use in zebrafish. PMID:19374550
Genome and proteome annotation: organization, interpretation and integration. PMID:19019817
The UCSC Genome Browser Database: update 2009. PMID:18996895
Finfish and aquatic invertebrate pathology resources for now and the future. PMID:18948226
The Protein Feature Ontology: a tool for the unification of protein feature annotations. PMID:18936051
Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools. PMID:18828907
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. PMID:18782832
Deciphering animal development through proteomics: requirements and prospects. PMID:18652672
Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes. PMID:18279518 -
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
PubMed citations: 60.
60 articles citing: The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. PMID:35789323
Lactate metabolism coordinates macrophage response and regeneration in zebrafish. PMID:35664055
Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary. PMID:35588359
Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms. PMID:35451481
A Critical Review of Zebrafish Models of Parkinson's Disease. PMID:35370740
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. PMID:35317743
Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration. PMID:35179181
A Pilot Single Cell Analysis of the Zebrafish Embryo Cellular Responses to Uropathogenic Escherichia coli Infection. PMID:35178490
Elevated Hoxb5b Expands Vagal Neural Crest Pool and Blocks Enteric Neuronal Development in Zebrafish. PMID:35174164
PCD Genes-From Patients to Model Organisms and Back to Humans. PMID:35163666
Cold Acclimation for Enhancing the Cold Tolerance of Zebrafish Cells. PMID:35153820
Pluripotency factors determine gene expression repertoire at zygotic genome activation. PMID:35145080
Evolution of Transient Receptor Potential (TRP) Ion Channels in Antarctic Fishes (Cryonotothenioidea) and Identification of Putative Thermosensors. PMID:35106545
FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes. PMID:35020925
Pharmacological activation of the Sonic hedgehog pathway with a Smoothened small molecule agonist ameliorates the severity of alcohol-induced morphological and behavioral birth defects in a zebrafish model of fetal alcohol spectrum disorder. PMID:35014067
Conservation of magnetite biomineralization genes in all domains of life and implications for magnetic sensing. PMID:35012979
Review: The Role of Wnt/β-Catenin Signalling in Neural Crest Development in Zebrafish. PMID:34912811
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources. PMID:34897464
ConVarT: a search engine for matching human genetic variants with variants from non-human species. PMID:34718716
Integrative Map of HIF1A Regulatory Elements and Variations. PMID:34680921
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. PMID:34634810
Beyond Neurons: Long Distance Communication in Development and Cancer. PMID:34621752
Primordial Germ Cell Specification in Vertebrate Embryos: Phylogenetic Distribution and Conserved Molecular Features of Preformation and Induction. PMID:34604230
GH Overexpression Alters Spermatic Cells MicroRNAome Profile in Transgenic Zebrafish. PMID:34567067
KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases. PMID:34537014
Transgenic fluorescent zebrafish lines that have revolutionized biomedical research. PMID:34496973
A nomenclature for echinoderm genes. PMID:34386815
Genome-scale metabolic network reconstruction of model animals as a platform for translational research. PMID:34282017
The tweety Gene Family: From Embryo to Disease. PMID:34262434
Integrated in silico MS-based phosphoproteomics and network enrichment analysis of RASopathy proteins. PMID:34229750
Zebrafish as a Model for Anticancer Nanomedicine Studies. PMID:34203407
Updates to HCOP: the HGNC comparison of orthology predictions tool. PMID:33959747
Gene and transgenics nomenclature for the laboratory axolotl-Ambystoma mexicanum. PMID:33896069
Evolution after Whole-Genome Duplication: Teleost MicroRNAs. PMID:33871629
Cardiovascular informatics: building a bridge to data harmony. PMID:33751044
Evolution and Expression of the Immune System of a Facultatively Anadromous Salmonid. PMID:33717060
An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution. PMID:33591267
Vitamin E Deficiency Disrupts Gene Expression Networks during Zebrafish Development. PMID:33573233
Zebrafish Models of Photoreceptor Dysfunction and Degeneration. PMID:33435268
Homology-Directed Repair in Zebrafish: Witchcraft and Wizardry? PMID:33425990
A Slimy Business: the Future of Fish Skin Microbiome Studies. PMID:33410931
CRISPR/Cas9-mediated knock-in of alligator cathelicidin gene in a non-coding region of channel catfish genome. PMID:33335280
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update. PMID:33104800
The mouse Gene Expression Database (GXD): 2021 update. PMID:33104772
OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines. PMID:33084874
Tracking Mechanisms of Viral Dissemination In Vivo. PMID:33023793
The pursuit of precision mitochondrial medicine: Harnessing preclinical cellular and animal models to optimize mitochondrial disease therapeutic discovery. PMID:33006762
Ribosomal proteins: mutant phenotypes by the numbers and associated gene expression changes. PMID:32810425
Building the vertebrate codex using the gene breaking protein trap library. PMID:32779569
Deep Transcriptomic Analysis Reveals the Dynamic Developmental Progression during Early Development of Channel Catfish (Ictalurus punctatus). PMID:32748829
Guidelines for human gene nomenclature. PMID:32747822
Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes. PMID:32640983
Automated generation of gene summaries at the Alliance of Genome Resources. PMID:32559296
Loss of hypoxia-inducible factor 1α affects hypoxia tolerance in larval and adult zebrafish (Danio rerio). PMID:32453991
Functional optical coherence tomography and photoacoustic microscopy imaging for zebrafish larvae. PMID:32341872
Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly. PMID:32161263
Alliance of Genome Resources Portal: unified model organism research platform. PMID:31552413
Using MARRVEL v1.2 for Bioinformatics Analysis of Human Genes and Variant Pathogenicity. PMID:31524990
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175 -
The Zebrafish Information Network (ZFIN): the zebrafish model organism database
PubMed citations: 45.
45 articles citing: The Zebrafish Information Network (ZFIN): the zebrafish model organism database
Museum of spatial transcriptomics. PMID:35273392
A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease. PMID:34906219
Systematic identification of A-to-I RNA editing in zebrafish development and adult organs. PMID:33872356
Zebrafish for Personalized Regenerative Medicine; A More Predictive Humanized Model of Endocrine Disease. PMID:32765420
Zebrafish as a tool to study schizophrenia-associated copy number variants. PMID:32433025
The Grass Carp Genomic Visualization Database (GCGVD): an informational platform for genome biology of grass carp. PMID:31592084
New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images. PMID:30157169
Computational resources associating diseases with genotypes, phenotypes and exposures. PMID:30102366
Elongator subunit 3 (ELP3) modifies ALS through tRNA modification. PMID:29415125
The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations. PMID:29220445
Fish Ontology framework for taxonomy-based fish recognition. PMID:28929028
Learning to Fish with Genetics: A Primer on the Vertebrate Model Danio rerio. PMID:27384027
Evolutionary and developmental analysis reveals KANK genes were co-opted for vertebrate vascular development. PMID:27292017
Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices. PMID:27191170
Standardized Welfare Terms for the Zebrafish Community. PMID:27096380
Anti-cancer drug discovery: update and comparisons in yeast, Drosophila, and zebrafish. PMID:24993385
Proteomics analysis of the zebrafish skeletal extracellular matrix. PMID:24608635
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. PMID:24568621
Mapping of zebrafish research: a global outlook. PMID:24131434
Functional knowledge transfer for high-accuracy prediction of under-studied biological processes. PMID:23516347
Mechanism of repeat-associated microRNAs in fragile X syndrome. PMID:22779005
Anatomy ontologies and potential users: bridging the gap. PMID:21995944
Informatics and standards for nanomedicine technology. PMID:21721140
Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling. PMID:20802085
The teleost anatomy ontology: anatomical representation for the genomics age. PMID:20547776
High-throughput screening and small animal models, where are we? PMID:20423335
Complexity of cis-regulatory organization of six3a during forebrain and eye development in zebrafish. PMID:20346166
A MOD(ern) perspective on literature curation. PMID:20221640
The role of post-transcriptional RNA processing and plasmid vector sequences on transient transgene expression in zebrafish. PMID:19662507
A primer for morpholino use in zebrafish. PMID:19374550
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data. PMID:18928517
Structural and functional divergence of two fish aquaporin-1 water channels following teleost-specific gene duplication. PMID:18811940
Onto-CC: a web server for identifying Gene Ontology conceptual clusters. PMID:18544607
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). PMID:18327244
Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species. PMID:18272850
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. PMID:17142475
Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage. PMID:16859531
An ontology for PACS integration. PMID:16763933
Zebrafish transgenic Enhancer TRAP line database (ZETRAP). PMID:16478534
The Zebrafish Information Network: the zebrafish model organism database. PMID:16381936
A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. PMID:16271140
The Vertebrate Genome Annotation (Vega) database. PMID:15608237
GOblet: a platform for Gene Ontology annotation of anonymous sequence data. PMID:15215401
Using genomic databases for sequence-based biological discovery. PMID:15208739
Functional annotation of the Arabidopsis genome using controlled vocabularies. PMID:15173566 -
Zebrafish in the Net
PubMed citations: 12.
12 articles citing: Zebrafish in the Net
Discovery of Novel Therapeutics for Muscular Dystrophies using Zebrafish Phenotypic Screens. PMID:31282429
Generation and characterization of a zebrafish muscle specific inducible Cre line. PMID:30353407
Quantifying compressive forces between living cell layers and within tissues using elastic round microgels. PMID:29760452
Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia. PMID:26961822
Efficient extravasation of tumor-repopulating cells depends on cell deformability. PMID:26787224
Actin capping protein CAPZB regulates cell morphology, differentiation, and neural crest migration in craniofacial morphogenesis†. PMID:26758871
Systematic transcriptome analysis of the zebrafish model of diamond-blackfan anemia induced by RPS24 deficiency. PMID:25189322
Assessment of hematopoietic failure due to Rpl11 deficiency in a zebrafish model of Diamond-Blackfan anemia by deep sequencing. PMID:24341334
Transcriptome analysis of the zebrafish model of Diamond-Blackfan anemia from RPS19 deficiency via p53-dependent and -independent pathways. PMID:23990987
Comparative and evolutionary analysis of the HES/HEY gene family reveal exon/intron loss and teleost specific duplication events. PMID:22808219
Zebrafish foxo3b negatively regulates canonical Wnt signaling to affect early embryogenesis. PMID:21915332
Zebrafish eaf1 and eaf2/u19 mediate effective convergence and extension movements through the maintenance of wnt11 and wnt5 expression. PMID:19380582 -
Exploring zebrafish genomic, functional and phenotypic data using ZFIN
PubMed citations: 3.
3 articles citing: Exploring zebrafish genomic, functional and phenotypic data using ZFIN
Animals devoid of pulmonary system as infection models in the study of lung bacterial pathogens. PMID:25699030
Homozygous splice mutation in CWF19L1 in a Turkish family with recessive ataxia syndrome. PMID:25361784
The mouse Gene Expression Database (GXD): 2011 update. PMID:21062809 -
Data extraction, transformation, and dissemination through ZFIN
PubMed citations: 2.
2 articles citing: Data extraction, transformation, and dissemination through ZFIN
Zebrafish information network, the knowledgebase for Danio rerio research. PMID:35166825
Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building. PMID:27855645 - https://doi.org/10.1093/nar/gkaa1010
Tags:
Tags
More detailed information about this field from each metasource.
allele
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
bibliography
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
disease process modeling
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
model organism
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
mutation
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
blast
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
freshwater fish
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
gene expression
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
genetics
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genome sequence
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genotype
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
marine biology
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
molecular neuroanatomy
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
phenotypes
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
vertebrates
metasource: re3data.org
version: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
Tags
More detailed information about this field from each metasource.
allele
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
bibliography
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
disease process modeling
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
model organism
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
mutation
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: ZFIN; The Zebrafish Information Network; DOI: https://doi.org/10.25504/FAIRsharing.ybxnhg; Last edited: March 15, 2021, 2:20 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
blast
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
freshwater fish
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
gene expression
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.938941
genetics
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genome sequence
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genotype
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
marine biology
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
molecular neuroanatomy
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
phenotypes
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
vertebrates
metasource: re3data.orgversion: re3data.org: The Zebrafish Information Network; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3CK5Z last accessed: 2022-11-04
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.938941
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.938941
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.938941
allele bibliography disease process modeling gene gene expression genome model organism mutation phenotype blast freshwater fish gene expression genetics genome sequence genomics genotype marine biology molecular neuroanatomy phenotypes vertebrates genotype and phenotype model organisms transcription factors and regulatory sites
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