Maize Genetics and Genomics Database
Names
More detailed information about this field from each metasource.
Maize Genetics and Genomics Database
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
MaizeGDB
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
Maize genetics and genomics database (MaizeGDB)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
maizegdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Names
More detailed information about this field from each metasource.
Maize Genetics and Genomics Database
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
MaizeGDB
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
Maize genetics and genomics database (MaizeGDB)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
maizegdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
Other names: MaizeGDB, Maize genetics and genomics database (MaizeGDB), maizegdb
Names
More detailed information about this field from each metasource.
Maize Genetics and Genomics Database
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
MaizeGDB
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
Maize genetics and genomics database (MaizeGDB)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
maizegdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
MaizeGDB is the maize research community's central repository for genetics and genomics information.
Description
More detailed information about this field from each metasource.
MaizeGDB is the maize research community's central repository for genetics and genomics information.
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Maize Genetics and Genomics Database (MaizeGDB) is a central repository for maize sequence, stock, phenotype, genotypic and karyotypic variation, and chromosomal mapping data. In addition, MaizeGDB provides contact information for over 2,400 maize cooperative researchers, facilitating interactions among members of the rapidly expanding maize community. MaizeGDB represents the synthesis of all data available previously from ZmDB and from MaizeDB - databases that have been superseded by MaizeGDB. MaizeGDB provides web-based tools for ordering maize stocks from several organizations including the Maize Genetics Cooperation Stock Center and the North Central Regional Plant Introduction Station (NCRPIS). Sequence searches yield records displayed with embedded links to facilitate ordering cloned sequences from various groups including the Maize Gene Discovery Project and the Clemson University Genomics Institute (CUGI). An intuitive web interface is implemented to facilitate navigation among related data, and analytical tools are embedded within data displays. Web-based curation tools for both designated experts and general researchers facilitate community-aided data acquisition.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The Maize Genetics and Genomics Database focuses on collecting data related to the crop plant and model organism Zea mays. The project's goals are to synthesize, display, and provide access to maize genomics and genetics data, prioritizing mutant and phenotype data and tools, structural and genetic map sets, and gene models. MaizeGDB also aims to make the Maize Newsletter available, and provide support services to the community of maize researchers. MaizeGDB is working with the Schnable lab, the Panzea project, The Genome Reference Consortium, and iPlant Collaborative to create a plan for archiving, dessiminating, visualizing, and analyzing diversity data. MMaizeGDB is short for Maize Genetics/Genomics Database. It is a USDA/ARS funded project to integrate the data found in MaizeDB and ZmDB into a single schema, develop an effective interface to access this data, and develop additional tools to make data analysis easier. Our goal in the long term is a true next-generation online maize database.aize genetics and genomics database.
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
Biological information about the crop plant Zea mays ssp. mays. The following datatypes are accessible through this site: genetic, genomic, sequence, gene product, functional characterization, literature reference, and person/organization contact information.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
Webpage:
https://www.maizegdb.orgWebpage
More detailed information about this field from each metasource.
https://www.maizegdb.org
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://www.maizegdb.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Licence:
Name: MaizeGDB Attribution requiredLicence name
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MaizeGDB Attribution required
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Public Domain
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
Licence URL
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https://www.maizegdb.org/cite
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://beta.maizegdb.org/doc
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
Publications:
(6)
Publications
More detailed information about this field from each metasource.
MaizeGDB update: new tools, data and interface for the maize model organism database
PMID: 26432828
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeGDB 2018: the maize multi-genome genetics and genomics database
PMID: 30407532
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeGDB: The maize model organism database for basic, translational, and applied research
PMID: 18769488
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeGDB: The Maize Genetics and Genomics Database
PMID: 26519406
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeDIG: Maize Database of Images and Genomes
PMID: 31555312
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/database/bap020
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Publications
More detailed information about this field from each metasource.
MaizeGDB update: new tools, data and interface for the maize model organism database
PMID: 26432828
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeGDB 2018: the maize multi-genome genetics and genomics database
PMID: 30407532
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeGDB: The maize model organism database for basic, translational, and applied research
PMID: 18769488
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeGDB: The Maize Genetics and Genomics Database
PMID: 26519406
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
MaizeDIG: Maize Database of Images and Genomes
PMID: 31555312
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/database/bap020
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
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MaizeGDB update: new tools, data and interface for the maize model organism database
PubMed citations: 86.
86 articles citing: MaizeGDB update: new tools, data and interface for the maize model organism database
Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize. PMID:35641525
Effect of aneuploidy of a non-essential chromosome on gene expression in maize. PMID:34997647
The Agricultural Genome to Phenome Initiative (AG2PI): creating a shared vision across crop and livestock research communities. PMID:34980221
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE). PMID:34911434
Bringing the Animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services. PMID:34850103
Integrating Genomic and Phenomic Approaches to Support Plant Genetic Resources Conservation and Use. PMID:34834625
Genetics of Germination and Seedling Traits under Drought Stress in a MAGIC Population of Maize. PMID:34579319
The utility of metabolomics as a tool to inform maize biology. PMID:34327322
Reference Gene Selection for RT-qPCR Analysis in Maize Kernels Inoculated with Aspergillus flavus. PMID:34071223
Gene Ontology Meta Annotator for Plants (GOMAP). PMID:34034755
Prediction and Activity of a Cationic α-Helix Antimicrobial Peptide ZM-804 from Maize. PMID:33807972
Genome-wide analysis of growth-regulating factors (GRFs) in Triticum aestivum. PMID:33552727
Engineering 6-phosphogluconate dehydrogenase improves grain yield in heat-stressed maize. PMID:33323483
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS. PMID:33313522
Genetic Basis of Maize Resistance to Multiple Insect Pests: Integrated Genome-Wide Comparative Mapping and Candidate Gene Prioritization. PMID:32599710
Maize Glossy2 and Glossy2-like Genes Have Overlapping and Distinct Functions in Cuticular Lipid Deposition. PMID:32430462
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Identification of Structural Variants in Two Novel Genomes of Maize Inbred Lines Possibly Related to Glyphosate Tolerance. PMID:32325671
Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions. PMID:32184350
TeaMiD: a comprehensive database of simple sequence repeat markers of tea. PMID:32159215
Seed Weight as a Covariate in Association and Prediction Studies for Biomass Traits in Maize Seedlings. PMID:32093233
Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Subdomain Adjacent to the Embryo Scutellum. PMID:32086366
Deducing signaling pathways from parallel actions of arsenite and antimonite in human epidermal keratinocytes. PMID:32076005
Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize. PMID:31900107
Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude. PMID:31860672
Water-deficit responsive microRNAs in the primary root growth zone of maize. PMID:31651253
Genetic and environmental variation impact the cuticular hydrocarbon metabolome on the stigmatic surfaces of maize. PMID:31623561
Meiotic crossovers characterized by haplotype-specific chromosome painting in maize. PMID:31601818
MaizeDIG: Maize Database of Images and Genomes. PMID:31555312
Characterization of natural genetic variation identifies multiple genes involved in salt tolerance in maize. PMID:31522293
Classifying cold-stress responses of inbred maize seedlings using RGB imaging. PMID:31245751
Maize GO Annotation-Methods, Evaluation, and Review (maize-GAMER). PMID:31245718
Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize. PMID:31239390
Combining next-generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M2 individuals. PMID:31169333
Proteases Underground: Analysis of the Maize Root Apoplast Identifies Organ Specific Papain-Like Cysteine Protease Activity. PMID:31114592
Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize. PMID:31110920
Tissue and nitrogen-linked expression profiles of ammonium and nitrate transporters in maize. PMID:31109290
Identification and characterization of a novel stay-green QTL that increases yield in maize. PMID:31033139
Genome-Wide Association Study and Pathway-Level Analysis of Kernel Color in Maize. PMID:31010822
Spontaneous mutations in maize pollen are frequent in some lines and arise mainly from retrotranspositions and deletions. PMID:30992374
Tasselseed5 overexpresses a wound-inducible enzyme, ZmCYP94B1, that affects jasmonate catabolism, sex determination, and plant architecture in maize. PMID:30937397
Technological advances in maize breeding: past, present and future. PMID:30798332
Diverse Components of Resistance to Fusarium verticillioides Infection and Fumonisin Contamination in Four Maize Recombinant Inbred Families. PMID:30717228
Genome-wide association analysis of stalk biomass and anatomical traits in maize. PMID:30704393
Comprehensive Analysis of the Cadmium Tolerance of Abscisic Acid-, Stress- and Ripening-Induced Proteins (ASRs) in Maize. PMID:30609672
PhytoTypeDB: a database of plant protein inter-cultivar variability and function. PMID:30576486
Camoco: A Net for the Sea of Candidate Genes. PMID:30509899
Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize. PMID:30413654
MaizeGDB 2018: the maize multi-genome genetics and genomics database. PMID:30407532
Whole-Genome and Expression Analyses of Bamboo Aquaporin Genes Reveal Their Functions Involved in Maintaining Diurnal Water Balance in Bamboo Shoots. PMID:30400256
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding. PMID:30353370
The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement. PMID:30343386
PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System. PMID:30266409
Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm. PMID:30262552
Carbon isotope composition, water use efficiency, and drought sensitivity are controlled by a common genomic segment in maize. PMID:30244394
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
The Quantitative Genetic Control of Root Architecture in Maize. PMID:30020530
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Activities and specificities of CRISPR/Cas9 and Cas12a nucleases for targeted mutagenesis in maize. PMID:29972722
Genome-wide identification and characterization of the RIO atypical kinase family in plants. PMID:29892951
Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize. PMID:29879919
The Challenge of Analyzing the Sugarcane Genome. PMID:29868072
Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions. PMID:29766351
SNPversity: a web-based tool for visualizing diversity. PMID:29688387
Long Non-Coding RNAs Responsive to Salt and Boron Stress in the Hyper-Arid Lluteño Maize from Atacama Desert. PMID:29558449
Maize leaf PPDK regulatory protein isoform-2 is specific to bundle sheath chloroplasts and paradoxically lacks a Pi-dependent PPDK activation activity. PMID:29281064
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. PMID:29220435
Cell-Type Transcriptomes of the Multicellular Green Alga Volvox carteri Yield Insights into the Evolutionary Origins of Germ and Somatic Differentiation Programs. PMID:29208647
Investigation of Antimicrobial Peptide Genes Associated with Fungus and Insect Resistance in Maize. PMID:28914754
Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips. PMID:28842533
Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response. PMID:28764653
Characterization of the maize lipoxygenase gene family in relation to aflatoxin accumulation resistance. PMID:28715485
Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation. PMID:28605768
Naming CRISPR alleles: endonuclease-mediated mutation nomenclature across species. PMID:28589392
PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. PMID:28365721
Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development. PMID:28242684
Gibberellin in plant height control: old player, new story. PMID:28160061
Protein Bioinformatics Databases and Resources. PMID:28150231
Synthesis and Functions of Jasmonates in Maize. PMID:27916835
A preliminary identification of Rf*-A619, a novel restorer gene for CMS-C in maize (Zea mays L.). PMID:27904810
The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize. PMID:27899149
The earliest maize from San Marcos Tehuacán is a partial domesticate with genomic evidence of inbreeding. PMID:27872313
Gain-of-function in Arabidopsis (GAINA) for identifying functional genes in Hevea brasiliensis. PMID:27818891
Plant Reactome: a resource for plant pathways and comparative analysis. PMID:27799469
High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events. PMID:27047500
NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data. PMID:26848255 -
MaizeGDB 2018: the maize multi-genome genetics and genomics database
PubMed citations: 81.
81 articles citing: MaizeGDB 2018: the maize multi-genome genetics and genomics database
Bioinformatics approaches and applications in plant biotechnology. PMID:35838847
Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach. PMID:35719692
G4Boost: a machine learning-based tool for quadruplex identification and stability prediction. PMID:35717172
GrainGenes: a data-rich repository for small grains genetics and genomics. PMID:35616118
The BAM7 gene in Zea mays encodes a protein with similar structural and catalytic properties to Arabidopsis BAM2. PMID:35503205
Using iRNA-seq analysis to predict gene expression regulatory level and activity in Zea mays tissues. PMID:35404453
Targeted suppression of gibberellin biosynthetic genes ZmGA20ox3 and ZmGA20ox5 produces a short stature maize ideotype. PMID:35244326
XSim version 2: simulation of modern breeding programs. PMID:35244161
Plant Public RNA-seq Database: a comprehensive online database for expression analysis of ~45 000 plant public RNA-Seq libraries. PMID:35218297
Identification and fine mapping of a major QTL (qRtsc8-1) conferring resistance to maize tar spot complex and validation of production markers in breeding lines. PMID:35181836
Modeling allelic diversity of multiparent mapping populations affects detection of quantitative trait loci. PMID:35100382
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
Plant height heterosis is quantitatively associated with expression levels of plastid ribosomal proteins. PMID:34782463
Maize Transformation: From Plant Material to the Release of Genetically Modified and Edited Varieties. PMID:34721493
Distinct Evolutionary Profiles and Functions of microRNA156 and microRNA529 in Land Plants. PMID:34681763
Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. PMID:34634032
Introgression of Maize Diversity for Drought Tolerance: Subtropical Maize Landraces as Source of New Positive Variants. PMID:34630452
Fine Mapping of a New Major QTL-qGLS8 for Gray Leaf Spot Resistance in Maize. PMID:34603363
MuWU: Mutant-seq library analysis and annotation. PMID:34586393
Leveraging histone modifications to improve genome annotations. PMID:34568920
Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements. PMID:34503979
Vision, challenges and opportunities for a Plant Cell Atlas. PMID:34491200
A pan-genomic approach to genome databases using maize as a model system. PMID:34416864
Global Pharmacopoeia Genome Database is an integrated and mineable genomic database for traditional medicines derived from eight international pharmacopoeias. PMID:34378141
Establishing a genomic database for the medicinal plants in the Brazilian Pharmacopoeia. PMID:34353338
Genetic Dissection of Quantitative Resistance to Common Rust (Puccinia sorghi) in Tropical Maize (Zea mays L.) by Combined Genome-Wide Association Study, Linkage Mapping, and Genomic Prediction. PMID:34276741
Maize Inbred Line B96 Is the Source of Large-Effect Loci for Resistance to Generalist but Not Specialist Spider Mites. PMID:34234802
A forward genetics approach integrating genome-wide association study and expression quantitative trait locus mapping to dissect leaf development in maize (Zea mays). PMID:34087008
New Insights Into Structure and Function of TIFY Genes in Zea mays and Solanum lycopersicum: A Genome-Wide Comprehensive Analysis. PMID:34054921
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics. PMID:34050180
IsoSplitter: identification and characterization of alternative splicing sites without a reference genome. PMID:34021065
Structural variation at the maize WUSCHEL1 locus alters stem cell organization in inflorescences. PMID:33888716
Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics. PMID:33852055
Genome-wide discovery of G-quadruplexes in barley. PMID:33846409
Widespread imprinting of transposable elements and variable genes in the maize endosperm. PMID:33830994
Genetic diversity and selection signatures in maize landraces compared across 50 years of in situ and ex situ conservation. PMID:33785893
Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain. PMID:33681994
Linking anthocyanin diversity, hue, and genetics in purple corn. PMID:33585872
Gene duplication at the Fascicled ear1 locus controls the fate of inflorescence meristem cells in maize. PMID:33579824
Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis. PMID:33410508
The Past, Present, and Future of Maize Improvement: Domestication, Genomics, and Functional Genomic Routes toward Crop Enhancement. PMID:33404535
Using single-plant-omics in the field to link maize genes to functions and phenotypes. PMID:33346944
Computing on Phenotypic Descriptions for Candidate Gene Discovery and Crop Improvement. PMID:33313544
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ. PMID:33303762
Gene regulatory effects of a large chromosomal inversion in highland maize. PMID:33270639
MutRank: an R shiny web-application for exploratory targeted mutual rank-based coexpression analyses integrated with user-provided supporting information. PMID:33240618
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database. PMID:33193550
PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs. PMID:33079992
Differential Expression of Maize and Teosinte microRNAs under Submergence, Drought, and Alternated Stress. PMID:33076374
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
Maize Introgression Library Provides Evidence for the Involvement of liguleless1 in Resistance to Northern Leaf Blight. PMID:32816917
BonnMu: A Sequence-Indexed Resource of Transposon-Induced Maize Mutations for Functional Genomics Studies. PMID:32769162
Quantitative, super-resolution localization of small RNAs with sRNA-PAINT. PMID:32716042
The unusual dRemp retrotransposon is abundant, highly mutagenic, and mobilized only in the second pollen mitosis of some maize lines. PMID:32661148
A maize LIPID TRANSFER PROTEIN may bridge the gap between PHYTOCHROME-mediated light signaling and cuticle biosynthesis. PMID:32631108
ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era. PMID:32629608
MaizeCUBIC: a comprehensive variation database for a maize synthetic population. PMID:32548639
SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat. PMID:32501478
RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum. PMID:32500918
Gapless assembly of maize chromosomes using long-read technologies. PMID:32434565
Complex Trait Loci in Maize Enabled by CRISPR-Cas9 Mediated Gene Insertion. PMID:32431725
Maize Glossy2 and Glossy2-like Genes Have Overlapping and Distinct Functions in Cuticular Lipid Deposition. PMID:32430462
Regulation of Sulfur Homeostasis in Mycorrhizal Maize Plants Grown in a Fe-Limited Environment. PMID:32375343
Identifying genetic variants underlying phenotypic variation in plants without complete genomes. PMID:32284578
Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus. PMID:32280432
High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements. PMID:32236090
De novo Assembly of Transcriptomes From a B73 Maize Line Introgressed With a QTL for Resistance to Gray Leaf Spot Disease Reveals a Candidate Allele of a Lectin Receptor-Like Kinase. PMID:32231673
Molecular characterization of teosinte branched1 gene governing branching architecture in cultivated maize and wild relatives. PMID:32058540
PAST: The Pathway Association Studies Tool to Infer Biological Meaning from GWAS Datasets. PMID:31906457
Transcriptome assembly from long-read RNA-seq alignments with StringTie2. PMID:31842956
MaizeSNPDB: A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines. PMID:31762961
ORCAE-AOCC: A Centralized Portal for the Annotation of African Orphan Crop Genomes. PMID:31757073
Whole-Genome and Transposed Duplication Contributes to the Expansion and Diversification of TLC Genes in Maize. PMID:31689978
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
MaizeDIG: Maize Database of Images and Genomes. PMID:31555312
Identification of the expressome by machine learning on omics data. PMID:31420517
Perspectives on microRNAs and Phased Small Interfering RNAs in Maize (Zea mays L.): Functions and Big Impact on Agronomic Traits Enhancement. PMID:31212808
Analysis of the genetic architecture of maize kernel size traits by combined linkage and association mapping. PMID:31199064
Haploid male fertility and spontaneous chromosome doubling evaluated in a diallel and recurrent selection experiment in maize. PMID:31062045
A Portion of the Apomixis Locus of Paspalum Simplex is Microsyntenic with an Unstable Chromosome Segment Highly Conserved Among Poaceae. PMID:30824748 -
MaizeGDB: The maize model organism database for basic, translational, and applied research
PubMed citations: 49.
49 articles citing: MaizeGDB: The maize model organism database for basic, translational, and applied research
Genomic Prediction Strategies for Dry-Down-Related Traits in Maize. PMID:35845649
Genome-Wide Association Study Dissects the Genetic Architecture of Maize Husk Tightness. PMID:32695127
Structural basis for monolignol oxidation by a maize laccase. PMID:32123349
Maize GO Annotation-Methods, Evaluation, and Review (maize-GAMER). PMID:31245718
Genome-wide association study for kernel composition and flour pasting behavior in wholemeal maize flour. PMID:30940081
Technological advances in maize breeding: past, present and future. PMID:30798332
MaizeGDB 2018: the maize multi-genome genetics and genomics database. PMID:30407532
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
QTLTableMiner++: semantic mining of QTL tables in scientific articles. PMID:29801439
Biochemical and genetic analyses of N metabolism in maize testcross seedlings: 2. Roots. PMID:29541827
Long-term on-farm participatory maize breeding by stratified mass selection retains molecular diversity while improving agronomic performance. PMID:29387160
Setting Up Decision-Making Tools toward a Quality-Oriented Participatory Maize Breeding Program. PMID:29312428
Genome-wide trait-trait dynamics correlation study dissects the gene regulation pattern in maize kernels. PMID:29037150
Characterization of the maize lipoxygenase gene family in relation to aflatoxin accumulation resistance. PMID:28715485
Biochemical and genetic analyses of N metabolism in maize testcross seedlings: 1. Leaves. PMID:28444412
MODEM: multi-omics data envelopment and mining in maize. PMID:27504011
Serine carboxypeptidase 46 Regulates Grain Filling and Seed Germination in Rice (Oryza sativa L.). PMID:27448032
PPIM: A Protein-Protein Interaction Database for Maize. PMID:26620522
Genetic control of morphometric diversity in the maize shoot apical meristem. PMID:26584889
The Impact of Genetic Relationship and Linkage Disequilibrium on Genomic Selection. PMID:26148055
Characterization of the Maize Chitinase Genes and Their Effect on Aspergillus flavus and Aflatoxin Accumulation Resistance. PMID:26090679
Genetic Architecture of Ear Fasciation in Maize (Zea mays) under QTL Scrutiny. PMID:25923975
Genetic and genomic toolbox of Zea mays. PMID:25740912
Transformation of rice with large maize genomic DNA fragments containing high content repetitive sequences. PMID:25700981
The maize brown midrib4 (bm4) gene encodes a functional folylpolyglutamate synthase. PMID:25495051
A computational platform to maintain and migrate manual functional annotations for BioCyc databases. PMID:25304126
Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. PMID:25194793
Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17. PMID:24330725
Genome-wide identification and characterisation of F-box family in maize. PMID:23928825
High-density genotyping: an overkill for QTL mapping? Lessons learned from a case study in maize and simulations. PMID:23860723
Getting to the roots of it: Genetic and hormonal control of root architecture. PMID:23785372
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. PMID:23586394
POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data. PMID:22253616
The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species. PMID:22250003
Chromosome visualization tool: a whole genome viewer. PMID:22220167
Tripal: a construction toolkit for online genome databases. PMID:21959868
MaizeGDB becomes 'sequence-centric'. PMID:21847242
MaizeGDB: curation and outreach go hand-in-hand. PMID:21624896
Multi-source and ontology-based retrieval engine for maize mutant phenotypes. PMID:21558151
Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. PMID:21423772
Patterns of polymorphism and linkage disequilibrium in cultivated barley. PMID:21076812
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database. PMID:20964836
Integrated database for identifying candidate genes for Aspergillus flavus resistance in maize. PMID:20946609
GreenPhylDB v2.0: comparative and functional genomics in plants. PMID:20864446
Choosing a genome browser for a Model Organism Database: surveying the maize community. PMID:20627860
Distributed simple sequence repeat markers for efficient mapping from maize public mutagenesis populations. PMID:20401644
QTLs for the elongation of axile and lateral roots of maize in response to low water potential. PMID:19847387
Accuracy of genotypic value predictions for marker-based selection in biparental plant populations. PMID:19841887
Drought stress and tropical maize: QTL-by-environment interactions and stability of QTLs across environments for yield components and secondary traits. PMID:19597726 -
MaizeGDB: The Maize Genetics and Genomics Database
PubMed citations: 6.
6 articles citing: MaizeGDB: The Maize Genetics and Genomics Database
Epistasis Activation Contributes Substantially to Heterosis in Temperate by Tropical Maize Hybrids. PMID:35898210
A pan-genomic approach to genome databases using maize as a model system. PMID:34416864
MaizeDIG: Maize Database of Images and Genomes. PMID:31555312
MaizeGDB 2018: the maize multi-genome genetics and genomics database. PMID:30407532
ZmCom1 Is Required for Both Mitotic and Meiotic Recombination in Maize. PMID:30061907
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants. PMID:28228535 -
MaizeDIG: Maize Database of Images and Genomes
PubMed citations: 3.
3 articles citing: MaizeDIG: Maize Database of Images and Genomes
Bioinformatics approaches and applications in plant biotechnology. PMID:35838847
MVS-Pheno: A Portable and Low-Cost Phenotyping Platform for Maize Shoots Using Multiview Stereo 3D Reconstruction. PMID:33313542
Genome-wide association analysis for maize stem Cell Wall-bound Hydroxycinnamates. PMID:31775632
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More detailed information about this field from each metasource.
cytogenetic map
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
germplasm
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
pathway model
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
fair
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
corn
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
gene mapping
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genomes
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genotype-environment interaction
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant genome mapping
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant genomes
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Tags
More detailed information about this field from each metasource.
cytogenetic map
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
germplasm
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
pathway model
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: MaizeGDB; Maize Genetics and Genomics Database; DOI: https://doi.org/10.25504/FAIRsharing.aq280w; Last edited: April 26, 2021, 11:34 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
fair
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
corn
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
gene mapping
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genomes
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
genotype-environment interaction
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant genome mapping
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant genomes
metasource: re3data.orgversion: re3data.org: MaizeGDB; editing status 2019-07-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3V32B last accessed: 2022-11-04
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
cytogenetic map dna gene expression polymorphism genome germplasm pathway model phenotype plant other plants corn gene mapping genetics genomes genomics genotype-environment interaction plant genome mapping plant genomes plant biology
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