Expression Atlas
Names
More detailed information about this field from each metasource.
Expression Atlas
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
Gene Expression Atlas
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
gene_expression_atlas
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
Names
More detailed information about this field from each metasource.
Expression Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
Gene Expression Atlas
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
gene_expression_atlas
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.256341
Other names: Gene Expression Atlas, gene_expression_atlas
Names
More detailed information about this field from each metasource.
Expression Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
Gene Expression Atlas
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
gene_expression_atlas
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.256341
The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?" The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answer questions such as what cell population a gene can act as a marker gene.
Description
More detailed information about this field from each metasource.
The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns, allowing a user to ask questions such as "what are the genes expressed in normal human liver" and "what genes are differentially expressed between water-stressed rice plants and controls with normal watering?" The resource features proteomics data sets provided by collaborators for corroboration between gene- and protein-level expression results. The latest component, Single Cell Expression Atlas, systematically reanalyses and visualises single cell RNA-sequencing datasets and helps answer questions such as what cell population a gene can act as a marker gene.
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Gene Expression Atlas is an added value database providing information about gene expression in different cell types, organism parts, developmental stages, disease states, sample treatments, and other biological/experimental conditions. The content of this database derives from curation, re-annotation and statistical analysis of selected data from the ArrayExpress Archive of Functional Genomics Data. A simple interface allows the user to query for differential gene expression either 1) by gene names or attributes such as Gene Ontology terms, or 2) by biological conditions, e.g. diseases, organism parts or cell types. The gene queries return the conditions where expression has been reported, while condition queries return which genes are reported to be expressed in these conditions. A combination of both query types is possible. The query results are ranked using various statistical measures and by how many independent studies in the database show the particular gene-condition association. Currently the database contains information about more than 200,000 genes from 9 species and almost 4,500 biological conditions studied in over 30,000 assays from over 1,000 independent studies.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The Expression Atlas provides information on gene expression patterns under different biological conditions such as a gene knock out, a plant treated with a compound, or in a particular organism part or cell. It includes both microarray and RNA-seq data. The data is re-analysed in-house to detect interesting expression patterns under the conditions of the original experiment. There are two components to the Expression Atlas, the Baseline Atlas and the Differential Atlas. The Baseline Atlas displays information about which gene products are present (and at what abundance) in "normal" conditions (e.g. tissue, cell type). It aims to answer questions such as "which genes are specifically expressed in human kidney?". This component of the Expression Atlas consists of highly-curated and quality-checked RNA-seq experiments from ArrayExpress. It has data for many different animal and plant species. New experiments are added as they become available. The Differential Atlas allows users to identify genes that are up- or down-regulated in a wide variety of different experimental conditions such as yeast mutants, cadmium treated plants, cystic fibrosis or the effect on gene expression of mind-body practice. Both microarray and RNA-seq experiments are included in the Differential Atlas. Experiments are selected from ArrayExpress and groups of samples are manually identified for comparison e.g. those with wild type genotype compared to those with a gene knock out. Each experiment is processed through our in-house differential expression statistical analysis pipeline to identify genes with a high probability of differential expression.
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
Semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.256341
Webpage:
http://www.ebi.ac.uk/gxaWebpage
More detailed information about this field from each metasource.
http://www.ebi.ac.uk/gxa
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
https://www.ebi.ac.uk/gxa/home
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
http://www.ebi.ac.uk/gxa/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.256341
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
CC
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
Publications:
(7)
Publications
More detailed information about this field from each metasource.
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants
PMID: 26481351
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
PMID: 24304889
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Expression Atlas: gene and protein expression across multiple studies and organisms
PMID: 29165655
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Expression Atlas update: from tissues to single cells
PMID: 31665515
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Gene expression atlas at the European bioinformatics institute
PMID: 19906730
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments
PMID: 22064864
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
http://dx.doi.org/10.1093/nar/gkt1270
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants
PMID: 26481351
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
PMID: 24304889
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Expression Atlas: gene and protein expression across multiple studies and organisms
PMID: 29165655
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Expression Atlas update: from tissues to single cells
PMID: 31665515
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Gene expression atlas at the European bioinformatics institute
PMID: 19906730
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments
PMID: 22064864
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
http://dx.doi.org/10.1093/nar/gkt1270
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants
PubMed citations: 272.
272 articles citing: Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants
High Oxytocin Receptor Expression Linked to Increased Cell Migration and Reduced Survival in Patients with Triple-Negative Breast Cancer. PMID:35884900
Generation of Astrocyte-Specific MAOB Conditional Knockout Mouse with Minimal Tonic GABA Inhibition. PMID:35786639
Hepatic hormone FGF21 and its analogues in clinical trials. PMID:35620160
Gene expression data classification using topology and machine learning models. PMID:35596135
DBHR: a collection of databases relevant to human research. PMID:35251694
Scripting Analyses of Genomes in Ensembl Plants. PMID:35037199
A computational exploration of resilience and evolvability of protein-protein interaction networks. PMID:34857859
BP180/Collagen XVII: A Molecular View. PMID:34830116
Plant PhysioSpace: a robust tool to compare stress response across plant species. PMID:34734276
ScaffComb: A Phenotype-Based Framework for Drug Combination Virtual Screening in Large-Scale Chemical Datasets. PMID:34723439
Fibroblast growth factor 21 in dairy cows: current knowledge and potential relevance. PMID:34517929
Retroviruses of Bats: a Threat Waiting in the Wings? PMID:34488459
Tissue distribution of stem cell factor in adults. PMID:34450114
Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base. PMID:34379637
Genetic mapping of renal glutathione suggests a novel regulatory locus on the murine X chromosome and overlap with hepatic glutathione regulation. PMID:34324982
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery. PMID:34146471
Engineering an anti-HER2 biparatopic antibody with a multimodal mechanism of action. PMID:34145240
SARS-CoV-2 and other human coronavirus show genome patterns previously associated to reduced viral recognition and altered immune response. PMID:34021237
Osteocyte transcriptome mapping identifies a molecular landscape controlling skeletal homeostasis and susceptibility to skeletal disease. PMID:33953184
The ZEB2-dependent EMT transcriptional programme drives therapy resistance by activating nucleotide excision repair genes ERCC1 and ERCC4 in colorectal cancer. PMID:33931939
Distinct PRC2 subunits regulate maintenance and establishment of Polycomb repression during differentiation. PMID:33887196
Skeletal Muscle and Bone - Emerging Targets of Fibroblast Growth Factor-21. PMID:33762965
Transcriptome-based approaches for clarification of nutritional responses and improvement of crop production. PMID:33762878
Genetic variation and microRNA targeting of A-to-I RNA editing fine tune human tissue transcriptomes. PMID:33685485
Deletion of hippocampal Glucocorticoid receptors unveils sex-biased microRNA expression and neuronal morphology alterations in mice. PMID:33665240
Single-cell molecular profiling of all three components of the HPA axis reveals adrenal ABCB1 as a regulator of stress adaptation. PMID:33571131
LincRNA-immunity landscape analysis identifies EPIC1 as a regulator of tumor immune evasion and immunotherapy resistance. PMID:33568470
Molecular Evolution of Antigen-Processing Genes in Salamanders: Do They Coevolve with MHC Class I Genes? PMID:33501944
PRMT3 interacts with ALDH1A1 and regulates gene-expression by inhibiting retinoic acid signaling. PMID:33495566
Identification of potential biomarkers of peripheral blood mononuclear cell in hepatocellular carcinoma using bioinformatic analysis: A protocol for systematic review and meta-analysis. PMID:33466191
Overcoming hypoxia-induced resistance of pancreatic and lung tumor cells by disrupting the PERK-NRF2-HIF-axis. PMID:33441543
NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks. PMID:33400606
What Can We Learn from FGF-2 Isoform-Specific Mouse Mutants? Differential Insights into FGF-2 Physiology In Vivo. PMID:33396566
VLA4-Targeted Nanoparticles Hijack Cell Adhesion-Mediated Drug Resistance to Target Refractory Myeloma Cells and Prolong Survival. PMID:33355244
MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression. PMID:33353933
Hearing impairment due to Mir183/96/182 mutations suggests both loss and gain of function effects. PMID:33318051
An Automated Functional Annotation Pipeline That Rapidly Prioritizes Clinically Relevant Genes for Autism Spectrum Disorder. PMID:33261099
Ribosomal Protein RPL10A Contributes to Early Plant Development and Abscisic Acid-Dependent Responses in Arabidopsis. PMID:33250910
Developmental constraint shaped genome evolution and erythrocyte loss in Antarctic fishes following paleoclimate change. PMID:33108368
Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks. PMID:33076821
Associations between Pregnane X Receptor and Breast Cancer Growth and Progression. PMID:33076284
Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy. PMID:33009409
Database: web application for visualization of the cumulated RNAseq data against the salicylic acid (SA) and methyl jasmonate (MeJA) treatment of Arabidopsis thaliana. PMID:33008298
Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness. PMID:33003522
Ionotropic Receptors as a Driving Force behind Human Synapse Establishment. PMID:32986821
Transmembrane BAX Inhibitor-1 Motif Containing Protein 5 (TMBIM5) Sustains Mitochondrial Structure, Shape, and Function by Impacting the Mitochondrial Protein Synthesis Machinery. PMID:32977469
High Expression of FGD3, a Putative Regulator of Cell Morphology and Motility, Is Prognostic of Favorable Outcome in Multiple Cancers. PMID:32913979
Finding semantic patterns in omics data using concept rule learning with an ontology-based refinement operator. PMID:32905086
Rational design of minimal synthetic promoters for plants. PMID:32856047
ERINA Is an Estrogen-Responsive LncRNA That Drives Breast Cancer through the E2F1/RB1 Pathway. PMID:32826278
Global multi-omics and systems pharmacological strategy unravel the multi-targeted therapeutic potential of natural bioactive molecules against COVID-19: An in silico approach. PMID:32771622
The therapeutic potential of FGF21 in metabolic diseases: from bench to clinic. PMID:32764725
Subcellular compartmentalization of the plant antioxidant system: an integrated overview. PMID:32742779
Prediction of the Receptorome for the Human-Infecting Virome. PMID:32725480
The oilseed rape developmental expression resource: a resource for the investigation of gene expression dynamics during the floral transition in oilseed rape. PMID:32693783
The genetic factors of bilaterian evolution. PMID:32672535
Cytosine methylation patterns suggest a role of methylation in plastic and adaptive responses to temperature in European grayling (Thymallus thymallus) populations. PMID:32660325
Obesity and Cancer: 27-Hydroxycholesterol, the Missing Link. PMID:32650428
Malignant tissues produce divergent antibody glycosylation of relevance for cancer gene therapy effectiveness. PMID:32643525
A user guide for the online exploration and visualization of PCAWG data. PMID:32636365
Effects of Exenatide and Humalog Mix25 on Fat Distribution, Insulin Sensitivity, and β-Cell Function in Normal BMI Patients with Type 2 Diabetes and Visceral Adiposity. PMID:32566685
The ATGL lipase cooperates with ABHD5 to mobilize lipids for hepatitis C virus assembly. PMID:32542055
TNFAIP8 controls murine intestinal stem cell homeostasis and regeneration by regulating microbiome-induced Akt signaling. PMID:32444641
Determinants of transcription factor regulatory range. PMID:32424124
Meta-Analysis of Expression Profiling Data Indicates Need for Combinatorial Biomarkers in Pediatric Ulcerative Colitis. PMID:32411805
Intron and gene size expansion during nervous system evolution. PMID:32410625
The mRNA Cap 2'-O-Methyltransferase CMTR1 Regulates the Expression of Certain Interferon-Stimulated Genes. PMID:32404510
Inhibition of HIF-1α by Atorvastatin During 131I-RTX Therapy in Burkitt's Lymphoma Model. PMID:32403237
Regulation of Energy Metabolism by Receptor Tyrosine Kinase Ligands. PMID:32372975
Uptake of high-density lipoprotein by scavenger receptor class B type 1 is associated with prostate cancer proliferation and tumor progression in mice. PMID:32358065
FGF21 Mimics a Fasting-Induced Metabolic State and Increases Appetite in Zebrafish. PMID:32332781
Infectious KoRV-related retroviruses circulating in Australian bats. PMID:32284399
Bacopa monnieri and Their Bioactive Compounds Inferred Multi-Target Treatment Strategy for Neurological Diseases: A Cheminformatics and System Pharmacology Approach. PMID:32252235
Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts. PMID:32246943
Streamlined selection of cancer antigens for vaccine development through integrative multi-omics and high-content cell imaging. PMID:32245999
Bacterially produced metabolites protect C. elegans neurons from degeneration. PMID:32208418
Step by step evolution of Indeterminate Domain (IDD) transcriptional regulators: from algae to angiosperms. PMID:32206771
UBB pseudogene 4 encodes functional ubiquitin variants. PMID:32161257
HDMAC: A Web-Based Interactive Program for High-Dimensional Analysis of Molecular Alterations in Cancer. PMID:32127576
PXR: a center of transcriptional regulation in cancer. PMID:32082968
Exploration of databases and methods supporting drug repurposing: a comprehensive survey. PMID:32055842
Synthetic analogues of 2-oxo acids discriminate metabolic contribution of the 2-oxoglutarate and 2-oxoadipate dehydrogenases in mammalian cells and tissues. PMID:32024885
An optimized chemical-genetic method for cell-specific metabolic labeling of RNA. PMID:32015544
Open Data for Differential Network Analysis in Glioma. PMID:31952211
Independent Transposon Exaptation Is a Widespread Mechanism of Redundant Enhancer Evolution in the Mammalian Genome. PMID:31950992
SERINC5 Is an Unconventional HIV Restriction Factor That Is Upregulated during Myeloid Cell Differentiation. PMID:31935717
Identification of Key Genes and Prognostic Value Analysis in Hepatocellular Carcinoma by Integrated Bioinformatics Analysis. PMID:31886163
The evolutionary history of the sucrose synthase gene family in higher plants. PMID:31852440
Transcriptome profiling reveals exposure to predicted end-of-century ocean acidification as a stealth stressor for Atlantic cod larvae. PMID:31729401
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients. PMID:31694641
Characterization of HMGB1/2 Interactome in Prostate Cancer by Yeast Two Hybrid Approach: Potential Pathobiological Implications. PMID:31694235
Stimulation of cell invasion by the Golgi Ion Channel GAAP/TMBIM4 via an H2O2-Dependent Mechanism. PMID:31693977
Williams syndrome hemideletion and LIMK1 variation both affect dorsal stream functional connectivity. PMID:31687737
An algorithm-based meta-analysis of genome- and proteome-wide data identifies a combination of potential plasma biomarkers for colorectal cancer. PMID:31666584
Inhibition of ErbB kinase signalling promotes resolution of neutrophilic inflammation. PMID:31613219
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. PMID:31597973
Fibroblast Growth Factor 21 and the Adaptive Response to Nutritional Challenges. PMID:31546675
Protein kinase C inhibitors override ZEB1-induced chemoresistance in HCC. PMID:31543517
Urinary ketone body loss leads to degeneration of brain white matter in elderly SLC5A8-deficient mice. PMID:31506013
Daphnia stressor database: Taking advantage of a decade of Daphnia '-omics' data for gene annotation. PMID:31366898
Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response. PMID:31335644
VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases. PMID:31317185
GEDS: A Gene Expression Display Server for mRNAs, miRNAs and Proteins. PMID:31277321
Systematic identification of recognition motifs for the hub protein LC8. PMID:31266884
Long noncoding RNA NEAT1 mediates neuronal histone methylation and age-related memory impairment. PMID:31266852
Nutrient availability shapes methionine metabolism in p16/MTAP-deleted cells. PMID:31249865
Common and distinct transcriptional signatures of mammalian embryonic lethality. PMID:31243271
Editing the immunopeptidome of melanoma cells using a potent inhibitor of endoplasmic reticulum aminopeptidase 1 (ERAP1). PMID:31222486
Chickspress: a resource for chicken gene expression. PMID:31210271
Analysis of factor V in zebrafish demonstrates minimal levels needed for early hemostasis. PMID:31167819
Sulforaphane Bioavailability and Chemopreventive Activity in Men Presenting for Biopsy of the Prostate Gland: A Randomized Controlled Trial. PMID:31155953
The Impact of Protein Architecture on Adaptive Evolution. PMID:31147689
Evolutionary Analyses Reveal Diverged Patterns of SQUAMOSA Promoter Binding Protein-Like (SPL) Gene Family in Oryza Genus. PMID:31139200
Widespread selection for extremely high and low levels of secondary structure in coding sequences across all domains of life. PMID:31138098
Gi/o-Protein Coupled Receptors in the Aging Brain. PMID:31105551
Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling. PMID:31101498
The clinical spectrum of the congenital myasthenic syndrome resulting from COL13A1 mutations. PMID:31081514
Genotify: Fast, lightweight gene lookup and summarization. PMID:31080942
Navigating in vitro bioactivity data by investigating available resources using model compounds. PMID:31036807
Mechanistic identification of biofluid metabolite changes as markers of acetaminophen-induced liver toxicity in rats. PMID:30974156
Evolutionary expression differences of creatine synthesis-related genes: Implications for skeletal muscle metabolism in fish. PMID:30931999
Primate piRNA Cluster Evolution Suggests Limited Relevance of Pseudogenes in piRNA-Mediated Gene Regulation. PMID:30888404
Angiosperm-Wide and Family-Level Analyses of AP2/ERF Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication. PMID:30863419
A wheat NAC interacts with an orphan protein and enhances resistance to Fusarium head blight disease. PMID:30821405
Independent Association of Serum Fibroblast Growth Factor 21 Levels With Impaired Liver Enzymes in Hyperthyroid Patients. PMID:30692965
Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow. PMID:30692556
Astrocyte Specificity and Coverage of hGFAP-CreERT2 [Tg(GFAP-Cre/ERT2)13Kdmc] Mouse Line in Various Brain Regions. PMID:30636902
NOTUM inhibition increases endocortical bone formation and bone strength. PMID:30622831
CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency. PMID:30545847
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PMID:30500839
Coordinated histone modifications and chromatin reorganization in a single cell revealed by FRET biosensors. PMID:30478057
TissueEnrich: Tissue-specific gene enrichment analysis. PMID:30346488
Advances in metabolic flux analysis toward genome-scale profiling of higher organisms. PMID:30341247
Comprehensive analysis of long noncoding RNA expression in dorsal root ganglion reveals cell-type specificity and dysregulation after nerve injury. PMID:30335683
PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System. PMID:30266409
Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise. PMID:30252882
Functional and phylogenetic characterization of noncanonical vitamin B12-binding proteins in zebrafish suggests involvement in cobalamin transport. PMID:30237171
Screening the full leucocyte receptor complex genomic region revealed associations with pemphigus that might be explained by gene regulation. PMID:30216441
AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors. PMID:30204897
Formin Proteins FHOD1 and INF2 in Triple-Negative Breast Cancer: Association With Basal Markers and Functional Activities. PMID:30158824
Systematic identification of non-coding pharmacogenomic landscape in cancer. PMID:30093685
BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery. PMID:30053270
Opportunities for utilizing polysomnography signals to characterize obstructive sleep apnea subtypes and severity. PMID:30047487
Targeting Pim Kinases and DAPK3 to Control Hypertension. PMID:30033129
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Circulating miR-30a-5p as a prognostic biomarker of left ventricular dysfunction after acute myocardial infarction. PMID:29959359
Long Noncoding RNAs in Colorectal Adenocarcinoma; an in silico Analysis. PMID:29948619
Analyses of the genetic diversity and protein expression variation of the acyl: CoA medium-chain ligases, ACSM2A and ACSM2B. PMID:29948332
RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins. PMID:29931156
A Novel Loss-of-Function Variant in Transmembrane Protein 263 (TMEM263) of Autosomal Dwarfism in Chicken. PMID:29930570
Whole Exome Sequencing of Patients from Multicase Families with Systemic Lupus Erythematosus Identifies Multiple Rare Variants. PMID:29884787
Pre- and postnatal exposure of mice to concentrated urban PM2.5 decreases the number of alveoli and leads to altered lung function at an early stage of life. PMID:29883952
RegenDbase: a comparative database of noncoding RNA regulation of tissue regeneration circuits across multiple taxa. PMID:29872545
Sex-Specific Transcriptome Differences in Substantia Nigra Tissue: A Meta-Analysis of Parkinson's Disease Data. PMID:29799491
Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3. PMID:29730990
Microdeletion on chromosome 8p23.1 in a familial form of severe Buruli ulcer. PMID:29708969
New perspectives: systems medicine in cardiovascular disease. PMID:29699591
Transcriptomic Studies of Malaria: a Paradigm for Investigation of Systemic Host-Pathogen Interactions. PMID:29695497
Interferon-Stimulated Gene (ISG)-Expression Screening Reveals the Specific Antibunyaviral Activity of ISG20. PMID:29695422
Genome-Wide Association Analyses Highlight the Potential for Different Genetic Mechanisms for Litter Size Among Sheep Breeds. PMID:29692799
The number of titrated microRNA species dictates ceRNA regulation. PMID:29684207
Mutation hotspots at CTCF binding sites coupled to chromosomal instability in gastrointestinal cancers. PMID:29670109
Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa. PMID:29642851
Massive mining of publicly available RNA-seq data from human and mouse. PMID:29636450
Blockade of Tumor-Expressed PD-1 promotes lung cancer growth. PMID:29632720
Cardiac arrhythmia and neuroexcitability gene variants in resected brain tissue from patients with sudden unexpected death in epilepsy (SUDEP). PMID:29619247
Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases. PMID:29579191
CD117/c-kit in Cancer Stem Cell-Mediated Progression and Therapeutic Resistance. PMID:29518044
The regulation of glycogenolysis in the brain. PMID:29483194
Recently Evolved Tumor Suppressor Transcript TP73-AS1 Functions as Sponge of Human-Specific miR-941. PMID:29474580
Diverse Regulators of Human Ribosome Biogenesis Discovered by Changes in Nucleolar Number. PMID:29444442
Combining asymmetric PCR-based enzymatic amplification with silicon photonic microring resonators for the detection of lncRNAs from low input human RNA samples. PMID:29431756
Targeted deletion of the Ncoa7 gene results in incomplete distal renal tubular acidosis in mice. PMID:29384414
Mechanogenetics for the remote and noninvasive control of cancer immunotherapy. PMID:29343642
Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues. PMID:29282079
A polygenic score for schizophrenia predicts glycemic control. PMID:29249829
Combination of Classifiers Identifies Fungal-Specific Activation of Lysosome Genes in Human Monocytes. PMID:29238336
SNP co-association and network analyses identify E2F3, KDM5A and BACH2 as key regulators of the bovine milk fatty acid profile. PMID:29230020
Genome-wide DNA methylation profiling using the methylation-dependent restriction enzyme LpnPI. PMID:29222086
SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets. PMID:29220461
Target and Tissue Selectivity Prediction by Integrated Mechanistic Pharmacokinetic-Target Binding and Quantitative Structure Activity Modeling. PMID:29204742
Evaluation and validation of commercial antibodies for the detection of Shb. PMID:29194461
Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis. PMID:29190970
Expression Atlas: gene and protein expression across multiple studies and organisms. PMID:29165655
Gramene 2018: unifying comparative genomics and pathway resources for plant research. PMID:29165610
A high-resolution mRNA expression time course of embryonic development in zebrafish. PMID:29144233
A nanobody-based tracer targeting DPP6 for non-invasive imaging of human pancreatic endocrine cells. PMID:29123178
Chromosome preference of disease genes and vectorization for the prediction of non-coding disease genes. PMID:29108274
Matrix metalloproteinase 14 modulates diabetes and Alzheimer's disease cross-talk: a meta-analysis. PMID:29103177
ExpressionDB: An open source platform for distributing genome-scale datasets. PMID:29095940
COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. PMID:29083911
StemMapper: a curated gene expression database for stem cell lineage analysis. PMID:29045725
Functional Genomics Approach Identifies Novel Signaling Regulators of TGFα Ectodomain Shedding. PMID:29018056
Detection of two non-synonymous SNPs in SLC45A2 on BTA20 as candidate causal mutations for oculocutaneous albinism in Braunvieh cattle. PMID:28982372
IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactions. PMID:28977416
Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples. PMID:28968689
Computational Approaches to Identify Genetic Interactions for Cancer Therapeutics. PMID:28941356
A molecular view of the normal human thyroid structure and function reconstructed from its reference transcriptome map. PMID:28923001
MCbiclust: a novel algorithm to discover large-scale functionally related gene sets from massive transcriptomics data collections. PMID:28911113
Critical Roles of Dual-Specificity Phosphatases in Neuronal Proteostasis and Neurological Diseases. PMID:28902166
Pitfalls of exome sequencing: a case study of the attribution of HABP2 rs7080536 in familial non-medullary thyroid cancer. PMID:28884020
Expression of transcription factor genes in cell lines corresponding to different stages of pancreatic cancer progression. PMID:28864901
A systematic analysis of orphan cyclins reveals CNTD2 as a new oncogenic driver in lung cancer. PMID:28860486
Position Matters: Network Centrality Considerably Impacts Rates of Protein Evolution in the Human Protein-Protein Interaction Network. PMID:28854629
Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells. PMID:28854368
RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes. PMID:28850115
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse. PMID:28838066
Discovery of Variants Underlying Host Susceptibility to Virus Infection Using Whole-Exome Sequencing. PMID:28808973
The Image Data Resource: A Bioimage Data Integration and Publication Platform. PMID:28775673
Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity. PMID:28755007
BOK displays cell death-independent tumor suppressor activity in non-small-cell lung carcinoma. PMID:28744854
Developmental and extrahepatic physiological functions of SREBP pathway genes in mice. PMID:28736205
Maml1 acts cooperatively with Gli proteins to regulate sonic hedgehog signaling pathway. PMID:28726779
Genomewide identification of genes involved in the potato response to drought indicates functional evolutionary conservation with Arabidopsis plants. PMID:28718511
Gramene Database: Navigating Plant Comparative Genomics Resources. PMID:28713666
Identification and characterization of BATF3 as a context-specific coactivator of the glucocorticoid receptor. PMID:28708849
Differential requirements for Tousled-like kinases 1 and 2 in mammalian development. PMID:28708136
Genomic analysis of an infant with intractable diarrhea and dilated cardiomyopathy. PMID:28701297
CD40L and Its Receptors in Atherothrombosis-An Update. PMID:28676852
Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium. PMID:28650483
Spatial Mapping and Profiling of Metabolite Distributions during Germination. PMID:28634228
High-throughput validation of ceRNA regulatory networks. PMID:28558729
Global Transcriptome Analysis of Combined Abiotic Stress Signaling Genes Unravels Key Players in Oryza sativa L.: An In silico Approach. PMID:28555143
Transcriptomics technologies. PMID:28545146
Long Non-Coding RNA SNHG6 as a Potential Biomarker for Hepatocellular Carcinoma. PMID:28508329
Structural-Functional Features of the Thyrotropin Receptor: A Class A G-Protein-Coupled Receptor at Work. PMID:28484426
Heritable L1 retrotransposition in the mouse primordial germline and early embryo. PMID:28483779
Most Alternative Isoforms Are Not Functionally Important. PMID:28483377
De Novo Coding Variants Are Strongly Associated with Tourette Disorder. PMID:28472652
Golgi anti-apoptotic protein: a tale of camels, calcium, channels and cancer. PMID:28469007
Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates. PMID:28464795
Intrinsic protein disorder reduces small-scale gene duplicability. PMID:28430886
GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses. PMID:28407145
Reproducible RNA-seq analysis using recount2. PMID:28398307
A Circadian Genomic Signature Common to Ketamine and Sleep Deprivation in the Anterior Cingulate Cortex. PMID:28395871
Novel RNA biomarkers of prostate cancer revealed by RNA-seq analysis of formalin-fixed samples obtained from Russian patients. PMID:28380430
Plant specimen contextual data consensus. PMID:28369359
The RNASeq-er API-a gateway to systematically updated analysis of public RNA-seq data. PMID:28369191
MRL proteins cooperate with activated Ras in glia to drive distinct oncogenic outcomes. PMID:28346426
Elucidation of MRAS-mediated Noonan syndrome with cardiac hypertrophy. PMID:28289718
LocExpress: a web server for efficiently estimating expression of novel transcripts. PMID:28155723
Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer. PMID:28131897
RNA binding motif protein 3: a potential biomarker in cancer and therapeutic target in neuroprotection. PMID:28118608
A novel role for transcription-coupled nucleotide excision repair for the in vivo repair of 3,N4-ethenocytosine. PMID:28115629
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones. PMID:28096900
Computational polypharmacology: a new paradigm for drug discovery. PMID:28067061
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. PMID:28025337
Secreted Proteins Defy the Expression Level-Evolutionary Rate Anticorrelation. PMID:28007979
Loss of expression of the recycling receptor, FcRn, promotes tumor cell growth by increasing albumin consumption. PMID:27974681
Gene-specific correlation of RNA and protein levels in human cells and tissues. PMID:27951527
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. PMID:27924033
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants. PMID:27924018
DNA methylation and substance-use risk: a prospective, genome-wide study spanning gestation to adolescence. PMID:27922636
The mouse Gene Expression Database (GXD): 2017 update. PMID:27899677
Open Targets: a platform for therapeutic target identification and validation. PMID:27899665
European Nucleotide Archive in 2016. PMID:27899630
WormBase ParaSite - a comprehensive resource for helminth genomics. PMID:27899279
Evaluation of the genetic basis of primary hypoadrenocorticism in Standard Poodles using SNP array genotyping and whole-genome sequencing. PMID:27864587
Plant Reactome: a resource for plant pathways and comparative analysis. PMID:27799469
TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions. PMID:27789689
Diabetes-linked transcription factor HNF4α regulates metabolism of endogenous methylarginines and β-aminoisobutyric acid by controlling expression of alanine-glyoxylate aminotransferase 2. PMID:27752141
Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis. PMID:27687780
Co-regulation of paralog genes in the three-dimensional chromatin architecture. PMID:27634932
Systems Medicine as an Emerging Tool for Cardiovascular Genetics. PMID:27626034
Mammalian PNLDC1 is a novel poly(A) specific exonuclease with discrete expression during early development. PMID:27515512
Identification of lung-specific genes by meta-analysis of multiple tissue RNA-seq data. PMID:27398317
Research Resources for Nuclear Receptor Signaling Pathways. PMID:27216565
Transcriptomics resources of human tissues and organs. PMID:27044256
Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates. PMID:27042287
Identifying ligands at orphan GPCRs: current status using structure-based approaches. PMID:26837045
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705 -
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
PubMed citations: 181.
181 articles citing: Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
Downregulation of LRRC19 Is Associated with Poor Prognosis in Colorectal Cancer. PMID:35794979
Screening of Immune-Related Genes and Predicting the Immunotherapeutic Effects of Formononetin in Breast Cancer: A Bioinformatics Analysis. PMID:35463082
Increased SERPINA3 Level Is Associated with Ulcerative Colitis. PMID:34943607
Bioinformatics analyses of the pathogenesis and new biomarkers of chronic obstructive pulmonary disease. PMID:34797299
Different members of the APOBEC3 family of DNA mutators have opposing associations with the landscape of breast cancer. PMID:34765315
Identification of Candidate Genes Related to Synovial Macrophages in Rheumatoid Arthritis by Bioinformatics Analysis. PMID:34764682
miRNATissueAtlas2: an update to the human miRNA tissue atlas. PMID:34570238
Identification of abnormally high expression of POGZ as a new biomarker associated with a poor prognosis in osteosarcoma. PMID:34474553
Identification and analysis of genes associated with epithelial ovarian cancer by integrated bioinformatics methods. PMID:34143800
DGLinker: flexible knowledge-graph prediction of disease-gene associations. PMID:34125897
SNX10 and PTGDS are associated with the progression and prognosis of cervical squamous cell carcinoma. PMID:34116656
CRED9: A differentially expressed elncRNA regulates expression of transcription factor CEBPA. PMID:34039742
Integrated analysis and identification of nine-gene signature associated to oral squamous cell carcinoma pathogenesis. PMID:33928003
MAFG-driven osteosarcoma cell progression is inhibited by a novel miRNA miR-4660. PMID:33868783
Identification of Pivotal MicroRNAs and Target Genes Associated with Persistent Atrial Fibrillation Based on Bioinformatics Analysis. PMID:33747117
Five candidate biomarkers associated with the diagnosis and prognosis of cervical cancer. PMID:33616161
Protease-activated receptors: An illustrated review. PMID:33537526
Dermatomyositis: immunological landscape, biomarkers, and potential candidate drugs. PMID:33389314
Integrated Bioinformatics Analysis Reveals Key Candidate Genes and Cytokine Pathways Involved in COVID-19 After Rhinovirus Infection in Asthma Patients. PMID:33315853
Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus. PMID:33287703
Identification of Potential Core Genes Associated With the Progression of Stomach Adenocarcinoma Using Bioinformatic Analysis. PMID:33193601
Integrating multiple microarray dataset analysis and machine learning methods to reveal the key genes and regulatory mechanisms underlying human intervertebral disc degeneration. PMID:33083145
iPSC Modeling of RBM20-Deficient DCM Identifies Upregulation of RBM20 as a Therapeutic Strategy. PMID:32905764
Identification of C3 as a therapeutic target for diabetic nephropathy by bioinformatics analysis. PMID:32778679
Genetic Basis of Maize Resistance to Multiple Insect Pests: Integrated Genome-Wide Comparative Mapping and Candidate Gene Prioritization. PMID:32599710
Prediction of the Secretome and the Surfaceome: A Strategy to Decipher the Crosstalk between Adipose Tissue and Muscle during Fetal Growth. PMID:32575512
Extracellular matrix-related genes play an important role in the progression of NMIBC to MIBC: a bioinformatics analysis study. PMID:32391563
TCTEX1D1 is a genetic modifier of disease progression in Duchenne muscular dystrophy. PMID:31896777
Multi-species annotation of transcriptome and chromatin structure in domesticated animals. PMID:31884969
Underlying Genes Involved in Atherosclerotic Macrophages: Insights from Microarray Data Mining. PMID:31875420
Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A. PMID:31814998
Identification of Potential Biomarkers in Association With Progression and Prognosis in Epithelial Ovarian Cancer by Integrated Bioinformatics Analysis. PMID:31708970
Enabling semantic queries across federated bioinformatics databases. PMID:31697362
Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module. PMID:31597271
Roundabout signaling pathway involved in the pathogenesis of COPD by integrative bioinformatics analysis. PMID:31571851
IRNdb: the database of immunologically relevant non-coding RNAs. PMID:31414702
Identification of candidate biomarkers correlated with the diagnosis and prognosis of cervical cancer via integrated bioinformatics analysis. PMID:31354287
Benchmark and integration of resources for the estimation of human transcription factor activities. PMID:31340985
Multi-omics Characterization of Interaction-mediated Control of Human Protein Abundance levels. PMID:31239291
MutationDistiller: user-driven identification of pathogenic DNA variants. PMID:31106342
Identification of key candidate genes and pathways in oral squamous cell carcinoma by integrated Bioinformatics analysis. PMID:31007745
Isoform-specific GSK3A activity is negatively correlated with human sperm motility. PMID:30824926
IPCT: Integrated Pharmacogenomic Platform of Human Cancer Cell Lines and Tissues. PMID:30813377
A Retrospective Analysis of the Cartilage Kunitz Protease Inhibitory Proteins Identifies These as Members of the Inter-α-Trypsin Inhibitor Superfamily with Potential Roles in the Protection of the Articulatory Surface. PMID:30678366
Deduction of Novel Genes Potentially Involved in Upper Tract Urothelial Carcinoma Using Next-Generation Sequencing and Bioinformatics Approaches. PMID:30662333
Arid3a regulates nephric tubule regeneration via evolutionarily conserved regeneration signal-response enhancers. PMID:30616715
CRlncRC: a machine learning-based method for cancer-related long noncoding RNA identification using integrated features. PMID:30598114
Identification of new molecular targets for PET imaging of the microglial anti-inflammatory activation state. PMID:30555554
SeqOthello: querying RNA-seq experiments at scale. PMID:30340508
Modified LDL Particles Activate Inflammatory Pathways in Monocyte-derived Macrophages: Transcriptome Analysis. PMID:30205792
Explaining cancer type specific mutations with transcriptomic and epigenomic features in normal tissues. PMID:30061703
Long Noncoding RNAs in Colorectal Adenocarcinoma; an in silico Analysis. PMID:29948619
Multi-omics "upstream analysis" of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer. PMID:29900117
A survey of microRNA single nucleotide polymorphisms identifies novel breast cancer susceptibility loci in a case-control, population-based study of African-American women. PMID:29871690
Molecular Evolution and Functional Divergence of the IgLON Family. PMID:29844654
Bioinformatics challenges and perspectives when studying the effect of epigenetic modifications on alternative splicing. PMID:29685977
A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. PMID:29668722
Unifying cancer and normal RNA sequencing data from different sources. PMID:29664468
Identification of differentially expressed genes and signaling pathways in ovarian cancer by integrated bioinformatics analysis. PMID:29588600
Where to search top-K biomedical ontologies? PMID:29579141
Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs. PMID:29315213
Prophetic Granger Causality to infer gene regulatory networks. PMID:29211761
Calpain-5 gene expression in the mouse eye and brain. PMID:29157313
Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq. PMID:29047256
dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals. PMID:28977473
SIDT2 Transports Extracellular dsRNA into the Cytoplasm for Innate Immune Recognition. PMID:28916264
Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma. PMID:28810145
Genomewide identification of genes involved in the potato response to drought indicates functional evolutionary conservation with Arabidopsis plants. PMID:28718511
CSmiRTar: Condition-Specific microRNA targets database. PMID:28704505
CARMIL family proteins as multidomain regulators of actin-based motility. PMID:28663287
Dosage compensation in the process of inactivation/reactivation during both germ cell development and early embryogenesis in mouse. PMID:28623283
Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. PMID:28609292
Computational prediction of lncRNA-mRNA interactionsby integrating tissue specificity in human transcriptome. PMID:28595592
Long-Term Culture of Self-renewing Pancreatic Progenitors Derived from Human Pluripotent Stem Cells. PMID:28591650
The microprotein Minion controls cell fusion and muscle formation. PMID:28569745
On the effects of alternative optima in context-specific metabolic model predictions. PMID:28557990
Long Non-Coding RNA SNHG6 as a Potential Biomarker for Hepatocellular Carcinoma. PMID:28508329
De Novo Coding Variants Are Strongly Associated with Tourette Disorder. PMID:28472652
Gene ORGANizer: linking genes to the organs they affect. PMID:28444223
The RNASeq-er API-a gateway to systematically updated analysis of public RNA-seq data. PMID:28369191
A genome wide association study identifies a lncRna as risk factor for pathological inflammatory responses in leprosy. PMID:28222097
Protein Bioinformatics Databases and Resources. PMID:28150231
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets. PMID:28108657
Establishment of a integrative multi-omics expression database CKDdb in the context of chronic kidney disease (CKD). PMID:28079125
Properties of human disease genes and the role of genes linked to Mendelian disorders in complex disease aetiology. PMID:28053046
FHF2 isoforms differentially regulate Nav1.6-mediated resurgent sodium currents in dorsal root ganglion neurons. PMID:27999940
EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY. PMID:27896970
HDBR Expression: A Unique Resource for Global and Individual Gene Expression Studies during Early Human Brain Development. PMID:27833533
A Precision Medicine Approach to the Rescue of Function on Malignant Calmodulinopathic Long-QT Syndrome. PMID:27765793
Meta-Analysis of Parkinson's Disease Transcriptome Data Using TRAM Software: Whole Substantia Nigra Tissue and Single Dopamine Neuron Differential Gene Expression. PMID:27611585
"Upstream Analysis": An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data. PMID:27600225
Data sources for in vivo molecular profiling of human phenotypes. PMID:27599755
Coding and noncoding variants in HFM1, MLH3, MSH4, MSH5, RNF212, and RNF212B affect recombination rate in cattle. PMID:27516620
Meta-Analysis of Tourette Syndrome and Attention Deficit Hyperactivity Disorder Provides Support for a Shared Genetic Basis. PMID:27499730
Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments. PMID:27401233
Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma. PMID:27367781
Computational Analysis of Single Nucleotide Polymorphisms Associated with Altered Drug Responsiveness in Type 2 Diabetes. PMID:27347941
Evaluating biomarkers to model cancer risk post cosmic ray exposure. PMID:27345199
Myosin 1e promotes breast cancer malignancy by enhancing tumor cell proliferation and stimulating tumor cell de-differentiation. PMID:27329840
Mechanisms of transcription factor evolution in Metazoa. PMID:27288445
The Ensembl Variant Effect Predictor. PMID:27268795
Inverse Association of Plasma Level of Glutathione Peroxidase with Liver Fibrosis in Chronic Hepatitis B: Potential Role of Iron. PMID:27252819
dbCPG: A web resource for cancer predisposition genes. PMID:27192119
Separating the wheat from the chaff: systematic identification of functionally relevant noncoding variants in ADHD. PMID:27113999
Trisomy 21 Alters DNA Methylation in Parent-of-Origin-Dependent and -Independent Manners. PMID:27100087
Complementarity of medium-throughput in situ RNA hybridization and tissue-specific transcriptomics: case study of Arabidopsis seed development kinetics. PMID:27095274
Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. PMID:27092246
Genome-wide DNA methylation analysis of transient neonatal diabetes type 1 patients with mutations in ZFP57. PMID:27075368
Small Maf proteins (MafF, MafG, MafK): History, structure and function. PMID:27058431
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
HNdb: an integrated database of gene and protein information on head and neck squamous cell carcinoma. PMID:27013077
miTALOS v2: Analyzing Tissue Specific microRNA Function. PMID:26998997
Assignment of Functional Relevance to Genes at Type 2 Diabetes-Associated Loci Through Investigation of β-Cell Mass Deficits. PMID:26963759
A Human "eFP" Browser for Generating Gene Expression Anatograms. PMID:26954504
Distribution of miRNA expression across human tissues. PMID:26921406
The RNase PARN-1 Trims piRNA 3' Ends to Promote Transcriptome Surveillance in C. elegans. PMID:26919432
NABIC Microarray: an integrated database of high throughput data for gene expression profiles. PMID:26912952
Systems Perturbation Analysis of a Large-Scale Signal Transduction Model Reveals Potentially Influential Candidates for Cancer Therapeutics. PMID:26904540
Distinct Transcriptional and Anti-Mycobacterial Profiles of Peripheral Blood Monocytes Dependent on the Ratio of Monocytes: Lymphocytes. PMID:26870787
Pluralistic and stochastic gene regulation: examples, models and consistent theory. PMID:26823500
MTD: a mammalian transcriptomic database to explore gene expression and regulation. PMID:26822098
Global analysis of human duplicated genes reveals the relative importance of whole-genome duplicates originated in the early vertebrate evolution. PMID:26801093
TRANS PROF DB: A new resource for sharing translational profiles. PMID:26779411
Epithelial sodium channel (ENaC) family: Phylogeny, structure-function, tissue distribution, and associated inherited diseases. PMID:26772908
Ensembl 2016. PMID:26687719
Dynamic sensitivity and nonlinear interactions influence the system-level evolutionary patterns of phototransduction proteins. PMID:26631565
MERAV: a tool for comparing gene expression across human tissues and cell types. PMID:26626150
RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles. PMID:26597164
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. PMID:26590256
Are Human Translated Pseudogenes Functional? PMID:26589994
The potential role of PHF6 as an oncogene: a genotranscriptomic/proteomic meta-analysis. PMID:26561469
Exome sequencing reveals a high genetic heterogeneity on familial Hirschsprung disease. PMID:26559152
Gramene 2016: comparative plant genomics and pathway resources. PMID:26553803
Identification of shared and unique susceptibility pathways among cancers of the lung, breast, and prostate from genome-wide association studies and tissue-specific protein interactions. PMID:26483192
WikiPathways: capturing the full diversity of pathway knowledge. PMID:26481357
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants. PMID:26481351
Cyclic thrombospondin-1 mimetics: grafting of a thrombospondin sequence into circular disulfide-rich frameworks to inhibit endothelial cell migration. PMID:26464514
Turning publicly available gene expression data into discoveries using gene set context analysis. PMID:26350211
Growth and hormone profiling in children with congenital melanocytic naevi. PMID:26286459
Homozygous loss-of-function variants in European cosmopolitan and isolate populations. PMID:26173456
The extracellular matrix: Tools and insights for the "omics" era. PMID:26163349
Anatomy of BioJS, an open source community for the life sciences. PMID:26153621
SNP array and FISH analysis of a proband with a 22q13.2- 22qter duplication shed light on the molecular origin of the rearrangement. PMID:26149167
Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine. PMID:26147095
Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium. PMID:26117540
CTNNA3 and SEMA3D: Promising loci for asthma exacerbation identified through multiple genome-wide association studies. PMID:26073756
RPdb: a database of experimentally verified cellular reprogramming records. PMID:26026167
UPF0586 Protein C9orf41 Homolog Is Anserine-producing Methyltransferase. PMID:26001783
PALM-IST: Pathway Assembly from Literature Mining--an Information Search Tool. PMID:25989388
ImmuSort, a database on gene plasticity and electronic sorting for immune cells. PMID:25988315
Roles of solvent accessibility and gene expression in modeling protein sequence evolution. PMID:25987828
Unique Features of Human Protein Arginine Methyltransferase 9 (PRMT9) and Its Substrate RNA Splicing Factor SF3B2. PMID:25979344
piRNAs from Pig Testis Provide Evidence for a Conserved Role of the Piwi Pathway in Post-Transcriptional Gene Regulation in Mammals. PMID:25950437
GXD: a community resource of mouse Gene Expression Data. PMID:25939429
Systems medicine: evolution of systems biology from bench to bedside. PMID:25891169
Assessing the impact of mutations found in next generation sequencing data over human signaling pathways. PMID:25883139
GeneTIER: prioritization of candidate disease genes using tissue-specific gene expression profiles. PMID:25861967
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI. PMID:25855807
Genome-wide epistatic expression quantitative trait loci discovery in four human tissues reveals the importance of local chromosomal interactions governing gene expression. PMID:25765234
Biological databases for human research. PMID:25712261
Enhancer evolution across 20 mammalian species. PMID:25635462
limma powers differential expression analyses for RNA-sequencing and microarray studies. PMID:25605792
The transcriptomic and proteomic landscapes of bone marrow and secondary lymphoid tissues. PMID:25541736
Regulatory insight into the European human pluripotent stem cell registry. PMID:25457963
Triticeae resources in Ensembl Plants. PMID:25432969
Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level. PMID:25428432
arrayMap 2014: an updated cancer genome resource. PMID:25428357
DDMGD: the database of text-mined associations between genes methylated in diseases from different species. PMID:25398897
ArrayExpress update--simplifying data submissions. PMID:25361974
Mg2+ effect on argonaute and RNA duplex by molecular dynamics and bioinformatics implications. PMID:25330448
Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters. PMID:25204982
A novel binary T-vector with the GFP reporter gene for promoter characterization. PMID:25197968
BioModels linked dataset. PMID:25182954
Bioinformatic approaches to augment study of epithelial-to-mesenchymal transition in lung cancer. PMID:25096367
BioJS: an open source standard for biological visualisation - its status in 2014. PMID:25075290
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384
A bioinformatic and computational study of myosin phosphatase subunit diversity. PMID:24898838
FANSe2: a robust and cost-efficient alignment tool for quantitative next-generation sequencing applications. PMID:24743329
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. PMID:24723265
miR-Synth: a computational resource for the design of multi-site multi-target synthetic miRNAs. PMID:24627222
Human-specific epigenetic variation in the immunological Leukotriene B4 Receptor (LTB4R/BLT1) implicated in common inflammatory diseases. PMID:24598577 -
Expression Atlas: gene and protein expression across multiple studies and organisms
PubMed citations: 167.
167 articles citing: Expression Atlas: gene and protein expression across multiple studies and organisms
Insight into the Roles of Proline-Rich Extensin-like Receptor Protein Kinases of Bread Wheat (Triticum aestivum L.). PMID:35888032
The Big Picture of Neurodegeneration: A Meta Study to Extract the Essential Evidence on Neurodegenerative Diseases in a Network-Based Approach. PMID:35832065
Epithelial to mesenchymal transition influences fibroblast phenotype in colorectal cancer by altering miR-200 levels in extracellular vesicles. PMID:35595718
DUSP4 protects BRAF- and NRAS-mutant melanoma from oncogene overdose through modulation of MITF. PMID:35580987
Differential expression analysis of genes and long non-coding RNAs associated with KRAS mutation in colorectal cancer cells. PMID:35562390
SigCom LINCS: data and metadata search engine for a million gene expression signatures. PMID:35524556
Exploring synergies between plant metabolic modelling and machine learning. PMID:35521559
A Cancer Associated Fibroblasts-Related Six-Gene Panel for Anti-PD-1 Therapy in Melanoma Driven by Weighted Correlation Network Analysis and Supervised Machine Learning. PMID:35479936
Molecular Characterization, Evolutionary Analysis, and Expression Profiling of BOR Genes in Important Cereals. PMID:35406892
Investigation of Roles of TaTALE Genes during Development and Stress Response in Bread Wheat. PMID:35270056
Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder. PMID:35215271
RFX transcription factors control a miR-150/PDAP1 axis that restrains the proliferation of human T cells. PMID:35143476
An in silico analysis identifies drugs potentially modulating the cytokine storm triggered by SARS-CoV-2 infection. PMID:35102208
Molecular Characterization Revealed the Role of Thaumatin-Like Proteins of Bread Wheat in Stress Response. PMID:35087559
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
Integrated Genomic and Bioinformatics Approaches to Identify Molecular Links between Endocrine Disruptors and Adverse Outcomes. PMID:35010832
TF-Marker: a comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human. PMID:34986601
Intellectual disability genomics: current state, pitfalls and future challenges. PMID:34930158
Progesterone Receptor Membrane Component (PGRMC)1 and PGRMC2 and Their Roles in Ovarian and Endometrial Cancer. PMID:34885064
High endogenous CCL2 expression promotes the aggressive phenotype of human inflammatory breast cancer. PMID:34824220
Overexpressing IFITM family genes predict poor prognosis in kidney renal clear cell carcinoma. PMID:34804826
ProteomicsDB: toward a FAIR open-source resource for life-science research. PMID:34791421
BioSamples database: FAIRer samples metadata to accelerate research data management. PMID:34747489
ScaffComb: A Phenotype-Based Framework for Drug Combination Virtual Screening in Large-Scale Chemical Datasets. PMID:34723439
New Prognostic Biomarkers and Drug Targets for Skin Cutaneous Melanoma via Comprehensive Bioinformatic Analysis and Validation. PMID:34722301
Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management. PMID:34721467
DBtRend: A Web-Server of tRNA Expression Profiles from Small RNA Sequencing Data in Humans. PMID:34680971
No Expression Divergence despite Transcriptional Interference between Nested Protein-Coding Genes in Mammals. PMID:34573363
Influence of the rs6736 Polymorphism on Ischemic Stroke Susceptibility in Han Chinese Individuals via the Disruption of miR-7-1 Binding to the C14orf119 Gene. PMID:34510374
The grapevine (Vitis vinifera L.) floral transcriptome in Pinot noir variety: identification of tissue-related gene networks and whorl-specific markers in pre- and post-anthesis phases. PMID:34465729
Comprehensive Omics Analysis of a Novel Small-Molecule Inhibitor of Chemoresistant Oncogenic Signatures in Colorectal Cancer Cell with Antitumor Effects. PMID:34440739
Chia (Salvia hispanica) Gene Expression Atlas Elucidates Dynamic Spatio-Temporal Changes Associated With Plant Growth and Development. PMID:34354718
CDH12 as a Candidate Gene for Kidney Injury in Posterior Urethral Valve Cases: A Genome-wide Association Study Among Patients with Obstructive Uropathies. PMID:34337522
A Personalized Therapeutics Approach Using an In Silico Drosophila Patient Model Reveals Optimal Chemo- and Targeted Therapy Combinations for Colorectal Cancer. PMID:34336681
A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle. PMID:34288907
Big Data in Nephrology. PMID:34194006
The Role of GIP Receptor in the CNS for the Pathogenesis of Obesity. PMID:34176784
Transcriptomic studies revealed pathophysiological impact of COVID-19 to predominant health conditions. PMID:34076249
Cancer-Associated circRNA-miRNA-mRNA Regulatory Networks: A Meta-Analysis. PMID:34055888
Exploration of glutathione reductase for abiotic stress response in bread wheat (Triticum aestivum L.). PMID:34032897
ZebraShare: a new venue for rapid dissemination of zebrafish mutant data. PMID:33954026
Genome-wide characterization and expression and co-expression analysis suggested diverse functions of WOX genes in bread wheat. PMID:33937537
Comorbidities and Susceptibility to COVID-19: A Generalized Gene Set Data Mining Approach. PMID:33924631
An integrated landscape of protein expression in human cancer. PMID:33893311
Lysosomal Calcium Channels in Autophagy and Cancer. PMID:33803964
Selective Inhibition of 2-Oxoglutarate and 2-Oxoadipate Dehydrogenases by the Phosphonate Analogs of Their 2-Oxo Acid Substrates. PMID:33511099
AIM2 in regulatory T cells restrains autoimmune diseases. PMID:33505023
Expression and prognostic analyses of SCAMPs in pancreatic adenocarcinoma. PMID:33493138
Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models. PMID:33491336
Detection of aberrant gene expression events in RNA sequencing data. PMID:33462443
A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions. PMID:33431024
Endolysosomal TRPMLs in Cancer. PMID:33419007
Insight into the bZIP Gene Family in Solanum tuberosum: Genome and Transcriptome Analysis to Understand the Roles of Gene Diversification in Spatiotemporal Gene Expression and Function. PMID:33383823
Polo like kinase 1 expression in cervical cancer tissues generated from multiple detection methods. PMID:33354424
Increased NFATC4 Correlates With Poor Prognosis of AML Through Recruiting Regulatory T Cells. PMID:33329712
Common Factors in Neurodegeneration: A Meta-Study Revealing Shared Patterns on a Multi-Omics Scale. PMID:33302607
Prospects for Using Expression Patterns of Paramyxovirus Receptors as Biomarkers for Oncolytic Virotherapy. PMID:33291506
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. PMID:33206638
An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma. PMID:33204302
Insertions of codons encoding basic amino acids in H7 hemagglutinins of influenza A viruses occur by recombination with RNA at hotspots near snoRNA binding sites. PMID:33188057
The mouse Gene Expression Database (GXD): 2021 update. PMID:33104772
Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin. PMID:33075080
[Application of RNA sequencing in clinical diagnosis of Mendelian disease]. PMID:33059815
LncExpDB: an expression database of human long non-coding RNAs. PMID:33045751
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Evaluation of the potential role of long non-coding RNA LINC00961 in luminal breast cancer: a case-control and systems biology study. PMID:33024416
Genome-wide characterization and expression analysis suggested diverse functions of the mechanosensitive channel of small conductance-like (MSL) genes in cereal crops. PMID:33024170
Structural and functional modelling of SARS-CoV-2 entry in animal models. PMID:32985513
Protein-Coding Genes in Euarchontoglires with Pseudogene Homologs in Humans. PMID:32927891
The HMGB1-2 Ovarian Cancer Interactome. The Role of HMGB Proteins and Their Interacting Partners MIEN1 and NOP53 in Ovary Cancer and Drug-Response. PMID:32867128
Novel tumour suppressor roles for GZMA and RASGRP1 in Theileria annulata-transformed macrophages and human B lymphoma cells. PMID:32830401
Collagen Type III Alpha 1 chain regulated by GATA-Binding Protein 6 affects Type II IFN response and propanoate metabolism in the recurrence of lower grade glioma. PMID:32757451
Mutations in MYLPF Cause a Novel Segmental Amyoplasia that Manifests as Distal Arthrogryposis. PMID:32707087
KF-1607, a Novel Pan Src Kinase Inhibitor, Attenuates Obstruction-Induced Tubulointerstitial Fibrosis in Mice. PMID:32690822
Tumors induce de novo steroid biosynthesis in T cells to evade immunity. PMID:32680985
Structural insights into the activity and regulation of human Josephin-2. PMID:32647816
Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies. PMID:32630753
How Do You Identify m6 A Methylation in Transcriptomes at High Resolution? A Comparison of Recent Datasets. PMID:32508872
Heavy Metal Stress-Associated Proteins in Rice and Arabidopsis: Genome-Wide Identification, Phylogenetics, Duplication, and Expression Profiles Analysis. PMID:32457808
In silico identification of MAPK14-related lncRNAs and assessment of their expression in breast cancer samples. PMID:32433496
The Birth of Bio-data Science: Trends, Expectations, and Applications. PMID:32428604
Intron and gene size expansion during nervous system evolution. PMID:32410625
Tryptophan catabolism reflects disease activity in human tuberculosis. PMID:32369456
Bioinformatic analysis and identification of single-stranded RNA sequences recognized by TLR7/8 in the SARS-CoV-2, SARS-CoV, and MERS-CoV genomes. PMID:32361001
Testis-specific serine kinase protein family in male fertility and as targets for non-hormonal male contraception†. PMID:32337545
Identification of Potential Biomarkers for Anti-PD-1 Therapy in Melanoma by Weighted Correlation Network Analysis. PMID:32316408
Test of Arabidopsis Space Transcriptome: A Discovery Environment to Explore Multiple Plant Biology Spaceflight Experiments. PMID:32265943
Genome-wide analysis of glycerol-3-phosphate O-acyltransferase gene family and functional characterization of two cutin group GPATs in Brassica napus. PMID:32246349
A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. PMID:32191846
Drosophila SLC22 Orthologs Related to OATs, OCTs, and OCTNs Regulate Development and Responsiveness to Oxidative Stress. PMID:32183456
UBB pseudogene 4 encodes functional ubiquitin variants. PMID:32161257
Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs. PMID:32150922
BarleyNet: A Network-Based Functional Omics Analysis Server for Cultivated Barley, Hordeum vulgare L. PMID:32133024
A Direct Comparison of Thyroid Hormone Receptor Protein Levels in Mice Provides Unexpected Insights into Thyroid Hormone Action. PMID:32122258
epiCOLOC: Integrating Large-Scale and Context-Dependent Epigenomics Features for Comprehensive Colocalization Analysis. PMID:32117461
Functional Annotation of the Transcriptome of the Pig, Sus scrofa, Based Upon Network Analysis of an RNAseq Transcriptional Atlas. PMID:32117413
Variability in estimated gene expression among commonly used RNA-seq pipelines. PMID:32066774
Loss of phosphatase activity in PTEN (phosphatase and tensin homolog deleted on chromosome ten) results in endometrial carcinoma in humans: An in-silico study. PMID:32042934
Pan-cancer analysis of whole genomes. PMID:32025007
Synthetic analogues of 2-oxo acids discriminate metabolic contribution of the 2-oxoglutarate and 2-oxoadipate dehydrogenases in mammalian cells and tissues. PMID:32024885
miR-TV: an interactive microRNA Target Viewer for microRNA and target gene expression interrogation for human cancer studies. PMID:31950188
Sex Determination Using RNA-Sequencing Analyses in Early Prenatal Pig Development. PMID:31817322
BEST: a web server for brain expression Spatio-temporal pattern analysis. PMID:31805847
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID:31799603
Multivariable regulation of gene expression plasticity in metazoans. PMID:31795914
The role and robustness of the Gini coefficient as an unbiased tool for the selection of Gini genes for normalising expression profiling data. PMID:31784565
miR-590-3p and Its Downstream Target Genes in HCC Cell Lines. PMID:31781476
An omics perspective on drug target discovery platforms. PMID:31774113
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases. PMID:31744855
Screening for mouse genes lost in mammals with long lifespans. PMID:31728160
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. PMID:31686107
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
Expression Atlas update: from tissues to single cells. PMID:31665515
Differential Treatments Based on Drug-induced Gene Expression Signatures and Longitudinal Systemic Lupus Erythematosus Stratification. PMID:31664045
How is the acyl chain composition of phosphoinositides created and does it matter? PMID:31657437
Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development. PMID:31608120
Ensembl Genomes 2020-enabling non-vertebrate genomic research. PMID:31598706
QTLbase: an integrative resource for quantitative trait loci across multiple human molecular phenotypes. PMID:31598699
Estrogen-related receptor β activation and isoform shifting by cdc2-like kinase inhibition restricts migration and intracranial tumor growth in glioblastoma. PMID:31570001
Paralog dependency indirectly affects the robustness of human cells. PMID:31556487
miRDB: an online database for prediction of functional microRNA targets. PMID:31504780
Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency. PMID:31481099
Stimulated upregulation of HO-1 is associated with inadequate response of gastric and ovarian cancer cell lines to hyperthermia and cisplatin treatment. PMID:31423266
Transcriptional Profiling of Stem Cells: Moving from Descriptive to Predictive Paradigms. PMID:31412285
Human APOBEC3G Prevents Emergence of Infectious Endogenous Retrovirus in Mice. PMID:31341050
Functional DNA variations associated with Saudi female with low VO2max: a pilot microarray study. PMID:31312377
NGSEA: Network-Based Gene Set Enrichment Analysis for Interpreting Gene Expression Phenotypes with Functional Gene Sets. PMID:31307154
Cyberbiosecurity Challenges of Pathogen Genome Databases. PMID:31157218
Tau tubulin kinase is required for spermatogenesis and development of motile cilia in planarian flatworms. PMID:31141462
Exome-wide search and functional annotation of genes associated in patients with severe tick-borne encephalitis in a Russian population. PMID:31122248
GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data. PMID:31110304
A novel conserved family of Macro-like domains-putative new players in ADP-ribosylation signaling. PMID:31106069
Computational analysis of data from a genome-wide screening identifies new PARP1 functional interactors as potential therapeutic targets. PMID:31105872
Computational identification of tissue-specific transcription factor cooperation in ten cattle tissues. PMID:31095599
HumCFS: a database of fragile sites in human chromosomes. PMID:30999860
GPR34 in spinal microglia exacerbates neuropathic pain in mice. PMID:30975169
Sclerostin inhibition alleviates breast cancer-induced bone metastases and muscle weakness. PMID:30965315
Digital expression explorer 2: a repository of uniformly processed RNA sequencing data. PMID:30942868
A novel assay for detection and quantification of C-mannosyl tryptophan in normal or diabetic mice. PMID:30886328
The long non-coding RNA LINC00460 predicts the prognosis and promotes the proliferation and migration of cells in bladder urothelial carcinoma. PMID:30881506
Infrastructures of systems biology that facilitate functional genomic study in rice. PMID:30874968
Recent advances in gene function prediction using context-specific coexpression networks in plants. PMID:30800290
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. PMID:30691411
Genome-Wide Characterization and Identification of Trihelix Transcription Factor and Expression Profiling in Response to Abiotic Stresses in Rice (Oryza sativa L.). PMID:30634597
Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome. PMID:30611210
Calmodulinopathy: A Novel, Life-Threatening Clinical Entity Affecting the Young. PMID:30574507
Diagnosing rare diseases after the exome. PMID:30559314
SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data. PMID:30481257
Open Targets Platform: new developments and updates two years on. PMID:30462303
Stemformatics: visualize and download curated stem cell data. PMID:30407577
Lineage-Specific Expression Divergence in Grasses Is Associated with Male Reproduction, Host-Pathogen Defense, and Domestication. PMID:30398650
The protein interaction networks of mucolipins and two-pore channels. PMID:30395881
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
SAGD: a comprehensive sex-associated gene database from transcriptomes. PMID:30380119
A call for public archives for biological image data. PMID:30377375
MatrixDB: integration of new data with a focus on glycosaminoglycan interactions. PMID:30371822
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes. PMID:30357405
ArrayExpress update - from bulk to single-cell expression data. PMID:30357387
PopHumanScan: the online catalog of human genome adaptation. PMID:30335169
POSTAR2: deciphering the post-transcriptional regulatory logics. PMID:30239819
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
A Computational Method for Classifying Different Human Tissues with Quantitatively Tissue-Specific Expressed Genes. PMID:30205473
Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response. PMID:30127393
A tissue-based draft map of the murine MHC class I immunopeptidome. PMID:30084848
Community-driven roadmap for integrated disease maps. PMID:29688273
A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. PMID:29668722
The European Bioinformatics Institute in 2017: data coordination and integration. PMID:29186510 -
Expression Atlas update: from tissues to single cells
PubMed citations: 150.
150 articles citing: Expression Atlas update: from tissues to single cells
Tumor specificity of WNT ligands and receptors reveals universal squamous cell carcinoma oncogenes. PMID:35850748
The TTYH3/MK5 Positive Feedback Loop regulates Tumor Progression via GSK3-β/β-catenin signaling in HCC. PMID:35844789
Prognostic Ability of Enhancer RNAs in Metastasis of Non-Small Cell Lung Cancer. PMID:35807355
The role of toll-like receptors (TLRs) in pan-cancer. PMID:35801728
Aldehyde dehydrogenase superfamily in sorghum: genome-wide identification, evolution, and transcript profiling during development stages and stress conditions. PMID:35786175
First Plant Cell Atlas symposium report. PMID:35774620
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas. PMID:35701420
The Less Well-Known Little Brothers: The SLC9B/NHA Sodium Proton Exchanger Subfamily-Structure, Function, Regulation and Potential Drug-Target Approaches. PMID:35694410
TACSTD2 upregulation is an early reaction to lung infection. PMID:35688908
Expression of Trace Amine-Associated Receptors in the Murine and Human Hippocampus Based on Public Transcriptomic Data. PMID:35681508
Applying transcriptomics to studyglycosylation at the cell type level. PMID:35663018
A genome-wide functional genomics approach uncovers genetic determinants of immune phenotypes in type 1 diabetes. PMID:35638288
The case for increasing diversity in tissue-based functional genomics datasets to understand human disease susceptibility. PMID:35614099
A basement membrane discovery pipeline uncovers network complexity, regulators, and human disease associations. PMID:35584218
Gene Expression Profiling of Glioblastoma to Recognize Potential Biomarker Candidates. PMID:35571016
Galbase: a comprehensive repository for integrating chicken multi-omics data. PMID:35549894
Comprehensive Analysis of Microsatellite-Related Transcriptomic Signature and Identify Its Clinical Value in Colon Cancer. PMID:35433823
CRABP1 in Non-Canonical Activities of Retinoic Acid in Health and Diseases. PMID:35406141
Construction of Bone Metastasis-Specific Regulation Network Based on Prognostic Stemness-Related Signatures in Prostate Cancer. PMID:35392496
Harmonizing model organism data in the Alliance of Genome Resources. PMID:35380658
Evolutionary divergence of Firre localization and expression. PMID:35304421
Integrative approaches for studying the role of noncoding RNAs in influencing drug efficacy and toxicity. PMID:35296201
Seven mysteries of LAG-3: a multi-faceted immune receptor of increasing complexity. PMID:35265944
Hsa-miR-183-5p Modulates Cell Adhesion by Repression of ITGB1 Expression in Prostate Cancer. PMID:35202085
Deep neural network prediction of genome-wide transcriptome signatures - beyond the Black-box. PMID:35197482
Identification of phenotype-specific networks from paired gene expression-cell shape imaging data. PMID:35197309
Epimutation in inherited metabolic disorders: the influence of aberrant transcription in adjacent genes. PMID:35190856
Factors That Affect the Rates of Adaptive and Nonadaptive Evolution at the Gene Level in Humans and Chimpanzees. PMID:35166775
Combined assessment of MHC binding and antigen abundance improves T cell epitope predictions. PMID:35128348
Biochemical and Structural Characterization of Human Core Elongator and Its Subassemblies. PMID:35128251
Mouse genomic and cellular annotations. PMID:35124726
The importance of effective data sharing and reuse to funders and others supporting research. PMID:35082454
Subversion of infiltrating prostate macrophages to a mixed immunosuppressive tumor-associated macrophage phenotype. PMID:35075795
Genome-wide annotation of protein-coding genes in pig. PMID:35073880
CRISPR activation enables high-fidelity reprogramming into human pluripotent stem cells. PMID:35063129
Large-Scale Whole Genome Sequencing Study Reveals Genetic Architecture and Key Variants for Breast Muscle Weight in Native Chickens. PMID:35052342
Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways. PMID:35037202
Co-expression of cancer-testis antigens of MAGE-A6 and MAGE-A11 is associated with tumor aggressiveness in patients with bladder cancer. PMID:35022469
SorghumBase: a web-based portal for sorghum genetic information and community advancement. PMID:35015132
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:34986604
Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data. PMID:34980200
Development of RIKEN Plant Metabolome MetaDatabase. PMID:34918130
scNetViz: from single cells to networks using Cytoscape. PMID:34912541
Benchmarking UMI-based single-cell RNA-seq preprocessing workflows. PMID:34906205
Nuclear Transport Factor 2 (NTF2) suppresses WM983B metastatic melanoma by modifying cell migration, metastasis, and gene expression. PMID:34880267
Hepatectomy-Induced Alterations in Hepatic Perfusion and Function - Toward Multi-Scale Computational Modeling for a Better Prediction of Post-hepatectomy Liver Function. PMID:34867441
Expression Atlas update: gene and protein expression in multiple species. PMID:34850121
Amino acid sequence homology between thyroid autoantigens and central nervous system proteins: Implications for the steroid-responsive encephalopathy associated with autoimmune thyroiditis. PMID:34849350
recount3: summaries and queries for large-scale RNA-seq expression and splicing. PMID:34844637
Diagnostic and Prognostic Implications of Caspase-1 and PD-L1 Co-Expression Patterns in Myelodysplastic Syndromes. PMID:34830867
Integration of Single-Cell RNA- and CAGE-seq Reveals Tooth-Enriched Genes. PMID:34806461
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. PMID:34791415
The reactome pathway knowledgebase 2022. PMID:34788843
The Capacity to Produce Hydrogen Sulfide (H2S) via Cysteine Degradation Is Ubiquitous in the Human Gut Microbiome. PMID:34745023
The nucleoporin Nup50 activates the Ran guanine nucleotide exchange factor RCC1 to promote NPC assembly at the end of mitosis. PMID:34725842
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. PMID:34723319
Effect of SARS-CoV-2 infection on host competing endogenous RNA and miRNA network. PMID:34722003
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
Phoenixin as a New Target in the Development of Strategies for Endometriosis Diagnosis and Treatment. PMID:34680544
(In)Distinctive Role of Long Non-Coding RNAs in Common and Rare Ovarian Cancers. PMID:34680193
Near-Infrared MAO A Inhibitor (NMI) Outperformed FDA-Approved Chemotherapeutic Agents in Brain and Other Cancers: A Bioinformatic Analysis of NCI60 Screening Data. PMID:34679383
Trends in oligomannosylation and α1,2-mannosidase expression in human cancers. PMID:34676051
Identification and quantification of immune infiltration landscape on therapy and prognosis in left- and right-sided colon cancer. PMID:34657172
CancerSCEM: a database of single-cell expression map across various human cancers. PMID:34643725
Steroid Receptors in Breast Cancer: Understanding of Molecular Function as a Basis for Effective Therapy Development. PMID:34638264
VThunter: a database for single-cell screening of virus target cells in the animal kingdom. PMID:34634807
A proteomics sample metadata representation for multiomics integration and big data analysis. PMID:34615866
Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. PMID:34591957
miRNATissueAtlas2: an update to the human miRNA tissue atlas. PMID:34570238
Identification of Key Candidate Genes and Chemical Perturbagens in Diabetic Kidney Disease Using Integrated Bioinformatics Analysis. PMID:34557161
A Multiplex CRISPR-Screen Identifies PLA2G4A as Prognostic Marker and Druggable Target for HOXA9 and MEIS1 Dependent AML. PMID:34502319
A compendium of uniformly processed human gene expression and splicing quantitative trait loci. PMID:34493866
Vision, challenges and opportunities for a Plant Cell Atlas. PMID:34491200
Maternal and offspring genetic risk score analyses of fetal alcohol exposure and attention-deficit hyperactivity disorder risk in offspring. PMID:34486127
Pattern of TAAR5 Expression in the Human Brain Based on Transcriptome Datasets Analysis. PMID:34445502
PathExNET: A tool for extracting pathway expression networks from gene expression statistics. PMID:34429851
VDAC Genes Expression and Regulation in Mammals. PMID:34421651
The Oldest Co-opted gag Gene of a Human Endogenous Retrovirus Shows Placenta-Specific Expression and Is Upregulated in Diffuse Large B-Cell Lymphomas. PMID:34410386
IDO Inhibition Facilitates Antitumor Immunity of Vγ9Vδ2 T Cells in Triple-Negative Breast Cancer. PMID:34381711
SARS-CoV-2 Infected Pediatric Cerebral Cortical Neurons: Transcriptomic Analysis and Potential Role of Toll-like Receptors in Pathogenesis. PMID:34360824
SPOT: a web-tool enabling swift profiling of transcriptomes. PMID:34289024
The tweety Gene Family: From Embryo to Disease. PMID:34262434
E183K Mutation in Chalcone Synthase C2 Causes Protein Aggregation and Maize Colorless. PMID:34249050
UCSC Cell Browser: Visualize Your Single-Cell Data. PMID:34244710
Positive Selection in Gene Regulatory Factors Suggests Adaptive Pleiotropic Changes During Human Evolution. PMID:34079582
In-depth analysis reveals complex molecular aetiology in a cohort of idiopathic cerebral palsy. PMID:34077496
Methylation and Expression of FTO and PLAG1 Genes in Childhood Obesity: Insight into Anthropometric Parameters and Glucose-Lipid Metabolism. PMID:34063412
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. PMID:34048576
Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods. PMID:34031612
Genome-wide associations between alcohol consumption and blood DNA methylation: evidence from twin study. PMID:33993705
Knowledge bases and software support for variant interpretation in precision oncology. PMID:33971666
Protective Role of a TMPRSS2 Variant on Severe COVID-19 Outcome in Young Males and Elderly Women. PMID:33921689
Barley Seeds miRNome Stability during Long-Term Storage and Aging. PMID:33919202
The Transcription Regulator Patz1 Is Essential for Neural Stem Cell Maintenance and Proliferation. PMID:33898458
New monoclonal antibodies that recognize an unglycosylated, conserved, extracellular region of CD44 in vitro and in vivo, and can block tumorigenesis. PMID:33891595
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis. PMID:33782609
Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily. PMID:33777532
Ancient evolution of hepadnaviral paleoviruses and their impact on host genomes. PMID:33747544
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. PMID:33711481
Single-cell RNA sequencing redefines the mesenchymal cell landscape of mouse endometrium. PMID:33710643
COVID-19 during pregnancy and adverse outcomes: Concerns and recommendations from The Brazilian Teratology Information Service. PMID:33710249
Analysing the yeast complexome-the Complex Portal rising to the challenge. PMID:33677561
Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes. PMID:33655208
How to Use Online Tools to Generate New Hypotheses for Mammary Gland Biology Research: A Case Study for Wnt7b. PMID:33625717
Processing and Analysis of RNA-seq Data from Public Resources. PMID:33606253
Curation of over 10 000 transcriptomic studies to enable data reuse. PMID:33599246
The genetics of mitochondrial disease: dissecting mitochondrial pathology using multi-omic pipelines. PMID:33586140
Renaissance of VDAC: New Insights on a Protein Family at the Interface between Mitochondria and Cytosol. PMID:33467485
Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators. PMID:33458747
Homology-Directed Repair in Zebrafish: Witchcraft and Wizardry? PMID:33425990
Evaluation of Male Fertility-Associated Loci in a European Population of Patients with Severe Spermatogenic Impairment. PMID:33383876
USP15 Deubiquitinase Safeguards Hematopoiesis and Genome Integrity in Hematopoietic Stem Cells and Leukemia Cells. PMID:33378683
The uncharacterized protein FAM47E interacts with PRMT5 and regulates its functions. PMID:33376131
PD-L1 Is a Tumor Suppressor in Aggressive Endometrial Cancer Cells and Its Expression Is Regulated by miR-216a and lncRNA MEG3. PMID:33363153
The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis. PMID:33339309
MSI1 Promotes the Expression of the GBM Stem Cell Marker CD44 by Impairing miRNA-Dependent Degradation. PMID:33291443
Inhibition of miR-29-3p isoforms via tough decoy suppresses osteoblast function in homeostasis but promotes intermittent parathyroid hormone-induced bone anabolism. PMID:33253931
Expression Partitioning of Duplicate Genes at Single Cell Resolution in Arabidopsis Roots. PMID:33240334
Computational gene expression profiling in the exploration of biomarkers, non-coding functional RNAs and drug perturbagens for COVID-19. PMID:33228475
From ArrayExpress to BioStudies. PMID:33211879
Open Targets Platform: supporting systematic drug-target identification and prioritisation. PMID:33196847
Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0). PMID:33193703
Guidelines for reporting single-cell RNA-seq experiments. PMID:33188371
TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment. PMID:33179754
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. PMID:33170273
The Zebrafish Information Network: major gene page and home page updates. PMID:33170210
The international nucleotide sequence database collaboration. PMID:33166387
TCRD and Pharos 2021: mining the human proteome for disease biology. PMID:33156327
Automatic Gene Function Prediction in the 2020's. PMID:33120976
Identification, expression, and artificial selection of silkworm epigenetic modification enzymes. PMID:33096977
Predicting candidate genes from phenotypes, functions and anatomical site of expression. PMID:33051643
Is the secret of VDAC Isoforms in their gene regulation? Characterization of human VDAC genes expression profile, promoter activity, and transcriptional regulators. PMID:33036380
The murine Microenvironment Cell Population counter method to estimate abundance of tissue-infiltrating immune and stromal cell populations in murine samples using gene expression. PMID:33023656
Common genetic variation in humans impacts in vitro susceptibility to SARS-CoV-2 infection. PMID:32995783
A simple, scalable approach to building a cross-platform transcriptome atlas. PMID:32986694
Mutational Landscape of Esophageal Squamous Cell Carcinoma in an Indian Cohort. PMID:32974170
Using Deep Learning to Extrapolate Protein Expression Measurements. PMID:32937025
ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. PMID:32907876
A long non-coding RNA (Lrap) modulates brain gene expression and levels of alcohol consumption in rats. PMID:32893479
Comparison of visualization tools for single-cell RNAseq data. PMID:32766548
Expansion of Single Cell Transcriptomics Data of SARS-CoV Infection in Human Bronchial Epithelial Cells to COVID-19. PMID:32754004
Genomic, transcriptomic, and protein landscape profile of CFTR and cystic fibrosis. PMID:32734384
ISOGlyP: de novo prediction of isoform-specific mucin-type O-glycosylation. PMID:32681163
Determination of a Tumor-Promoting Microenvironment in Recurrent Medulloblastoma: A Multi-Omics Study of Cerebrospinal Fluid. PMID:32466393
An up-to-date overview of computational polypharmacology in modern drug discovery. PMID:32452701
ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses. PMID:32449934
Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract. PMID:32425701
Epigenetic Conservation Is a Beacon of Function: An Analysis Using Methcon5 Software for Studying Gene Methylation. PMID:32078366
Open Data for Differential Network Analysis in Glioma. PMID:31952211
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604 -
Gene expression atlas at the European bioinformatics institute
PubMed citations: 117.
117 articles citing: Gene expression atlas at the European bioinformatics institute
Exploiting plant transcriptomic databases: Resources, tools, and approaches. PMID:35605200
Genome-wide analysis of AAAG and ACGT cis-elements in Arabidopsis thaliana reveals their involvement with genes downregulated under jasmonic acid response in an orientation independent manner. PMID:35302624
The expression of essential selenoproteins during development requires SECIS-binding protein 2-like. PMID:35210313
High male specific contribution of the X-chromosome to individual global recombination rate in dairy cattle. PMID:35144552
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research. PMID:34741192
Factors Regulating the Activity of LINE1 Retrotransposons. PMID:34680956
The Expression and Roles of the Super Elongation Complex in Mouse Cochlear Lgr5+ Progenitor Cells. PMID:34658793
No Expression Divergence despite Transcriptional Interference between Nested Protein-Coding Genes in Mammals. PMID:34573363
Maternal and offspring genetic risk score analyses of fetal alcohol exposure and attention-deficit hyperactivity disorder risk in offspring. PMID:34486127
Survey of cancer cell anatomy in nonadhesive confinement reveals a role for filamin-A and fascin-1 in leader bleb-based migration. PMID:34260278
Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP. PMID:33750297
The reuse of public datasets in the life sciences: potential risks and rewards. PMID:33024631
Rapid preliminary purity evaluation of tumor biopsies using deep learning approach. PMID:32695267
The oilseed rape developmental expression resource: a resource for the investigation of gene expression dynamics during the floral transition in oilseed rape. PMID:32693783
Low-Copy Genes in Terpenoid Metabolism: The Evolution and Expression of MVK and DXR Genes in Angiosperms. PMID:32325804
GPCRs in pancreatic adenocarcinoma: Contributors to tumour biology and novel therapeutic targets. PMID:32060895
Expression Atlas update: from tissues to single cells. PMID:31665515
Detection and Quantification of GPCR mRNA: An Assessment and Implications of Data from High-Content Methods. PMID:31646252
Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human. PMID:31400206
Genome wide analysis of W-box element in Arabidopsis thaliana reveals TGAC motif with genes down regulated by heat and salinity. PMID:30737427
Genome-wide association study of inhaled corticosteroid response in admixed children with asthma. PMID:30697902
Lineage-Specific Expression Divergence in Grasses Is Associated with Male Reproduction, Host-Pathogen Defense, and Domestication. PMID:30398650
Mean-Variance QTL Mapping Identifies Novel QTL for Circadian Activity and Exploratory Behavior in Mice. PMID:30389793
Large-scale investigation of the reasons why potentially important genes are ignored. PMID:30226837
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. PMID:29931155
Germline Variation and Breast Cancer Incidence: A Gene-Based Association Study and Whole-Genome Prediction of Early-Onset Breast Cancer. PMID:29898891
Integrative bioinformatics analysis characterizing the role of EDC3 in mRNA decay and its association to intellectual disability. PMID:29685133
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures. PMID:29684165
Expression analysis of candidate genes for fatty acid composition in adipose tissue and identification of regulatory regions. PMID:29391556
Early microbial colonization affects DNA methylation of genes related to intestinal immunity and metabolism in preterm pigs. PMID:29365082
Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches. PMID:29186305
Murine glomerular transcriptome links endothelial cell-specific molecule-1 deficiency with susceptibility to diabetic nephropathy. PMID:28934365
Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression. PMID:28538367
BCIP: a gene-centered platform for identifying potential regulatory genes in breast cancer. PMID:28327601
Genetic determinants of adiponectin regulation revealed by pregnancy. PMID:28317342
Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case. PMID:28196369
SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases. PMID:28178937
18F-5-Fluoroaminosuberic Acid as a Potential Tracer to Gauge Oxidative Stress in Breast Cancer Models. PMID:27789715
Expression-based GWAS identifies variants, gene interactions and key regulators affecting intramuscular fatty acid content and composition in porcine meat. PMID:27666082
Sex-Specific Selection and Sex-Biased Gene Expression in Humans and Flies. PMID:27658217
ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer. PMID:27519173
Withdrawn: Discovering Genes Essential to the Hypothalamic Regulation of Human Reproduction Using a Human Disease Model: Adjusting to Life in the "-Omics" Era. PMID:27454361
The 5'UTR Intron of Arabidopsis GGT1 Aminotransferase Enhances Promoter Activity by Recruiting RNA Polymerase II. PMID:27418588
Computational Analysis of Single Nucleotide Polymorphisms Associated with Altered Drug Responsiveness in Type 2 Diabetes. PMID:27347941
Analysis of aggregated cell-cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells. PMID:27307648
Maternal Smoking during Pregnancy and DNA-Methylation in Children at Age 5.5 Years: Epigenome-Wide-Analysis in the European Childhood Obesity Project (CHOP)-Study. PMID:27171005
Overexpression of Kinesin Associated Protein 3 (KIFAP3) in Breast Cancer. PMID:26843789
A Comprehensive Analysis of Common and Rare Variants to Identify Adiposity Loci in Hispanic Americans: The IRAS Family Study (IRASFS). PMID:26599207
Discovering Genes Essential to the Hypothalamic Regulation of Human Reproduction Using a Human Disease Model: Adjusting to Life in the "-Omics" Era. PMID:26394276
Whole-genome sequencing identifies a novel ABCB7 gene mutation for X-linked congenital cerebellar ataxia in a large family of Mongolian ancestry. PMID:26242992
Comprehensive comparison of large-scale tissue expression datasets. PMID:26157623
What to compare and how: Comparative transcriptomics for Evo-Devo. PMID:25864439
BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis. PMID:25819073
Gateways to the FANTOM5 promoter level mammalian expression atlas. PMID:25723102
Ubiquitin specific protease 21 is dispensable for normal development, hematopoiesis and lymphocyte differentiation. PMID:25680095
Current advances in systems and integrative biology. PMID:25379142
Single-Nucleotide Polymorphisms Within MicroRNAs Sequences and Their 3' UTR Target Sites May Regulate Gene Expression in Gastrointestinal Tract Cancers. PMID:25237569
SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases. PMID:25127889
Semantic Web repositories for genomics data using the eXframe platform. PMID:25093072
Adropin is a brain membrane-bound protein regulating physical activity via the NB-3/Notch signaling pathway in mice. PMID:25074942
yStreX: yeast stress expression database. PMID:25024351
miRror-Suite: decoding coordinated regulation by microRNAs. PMID:24907353
Increasing consistency of disease biomarker prediction across datasets. PMID:24740471
Genome-wide tissue-specific gene expression, co-expression and regulation of co-expressed genes in adult nematode Ascaris suum. PMID:24516681
IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics. PMID:24451627
Aging-induced proteostatic changes in the rat hippocampus identify ARP3, NEB2 and BRAG2 as a molecular circuitry for cognitive impairment. PMID:24069387
Integration of cardiac proteome biology and medicine by a specialized knowledgebase. PMID:23965338
Genome-wide identification, evolutionary and expression analysis of the aspartic protease gene superfamily in grape. PMID:23945092
Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data. PMID:23895370
Differential network analysis for the identification of condition-specific pathway activity and regulation. PMID:23749957
Toxicological effects of the different substances in tobacco smoke on human embryonic development by a systems chemo-biology approach. PMID:23637898
Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology. PMID:23590598
hERG channel function: beyond long QT. PMID:23459091
Pharmacological potential of biogenic amine-polyamine interactions beyond neurotransmission. PMID:23347064
XperimentR: painless annotation of a biological experiment for the laboratory scientist. PMID:23323856
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. PMID:23314754
Online tools for bioinformatics analyses in nutrition sciences. PMID:22983844
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules. PMID:22780989
HEMD: an integrated tool of human epigenetic enzymes and chemical modulators for therapeutics. PMID:22761927
The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output. PMID:22547686
Comprehensive literature review and statistical considerations for microarray meta-analysis. PMID:22262733
Affymetrix GeneChip microarray preprocessing for multivariate analyses. PMID:22210854
An expression map for Anopheles gambiae. PMID:22185628
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. PMID:22110038
Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma. PMID:22106335
Analysis of genome-wide association study data using the protein knowledge base. PMID:22077927
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID:22064864
Anatomy ontologies and potential users: bridging the gap. PMID:21995944
Ortho2ExpressMatrix--a web server that interprets cross-species gene expression data by gene family information. PMID:21970648
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. PMID:21969471
Prediction of biological functions of Shewanella-like protein phosphatases (Shelphs) across different domains of life. PMID:21960277
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species. PMID:21896772
Gene coexpression network analysis as a source of functional annotation for rice genes. PMID:21799793
Functional integrative levels in the human interactome recapitulate organ organization. PMID:21799769
COLOMBOS: access port for cross-platform bacterial expression compendia. PMID:21779320
Pathway annotation and analysis with Reactome: the solute carrier class of membrane transporters. PMID:21712192
GENT: gene expression database of normal and tumor tissues. PMID:21695066
Automating generation of textual class definitions from OWL to English. PMID:21624160
OntoCAT--simple ontology search and integration in Java, R and REST/JavaScript. PMID:21619703
Distinct p53 transcriptional programs dictate acute DNA-damage responses and tumor suppression. PMID:21565614
DREME: motif discovery in transcription factor ChIP-seq data. PMID:21543442
Answering biological questions: querying a systems biology database for nutrigenomics. PMID:21437033
Disease and phenotype data at Ensembl. PMID:21400687
Content-based microarray search using differential expression profiles. PMID:21172034
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle. PMID:21149299
Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins. PMID:21087995
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. PMID:21071405
RBPDB: a database of RNA-binding specificities. PMID:21036867
Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets. PMID:20824171
GeneBrowser 2: an application to explore and identify common biological traits in a set of genes. PMID:20663121
A quick guide to large-scale genomic data mining. PMID:20523745
The case for cloud computing in genome informatics. PMID:20441614
A global map of human gene expression. PMID:20379172
Modeling sample variables with an Experimental Factor Ontology. PMID:20200009
Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer. PMID:20108112
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. PMID:19965766
The European Bioinformatics Institute's data resources. PMID:19934258 -
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments
PubMed citations: 95.
95 articles citing: Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments
Potential Influence of Age and Diabetes Mellitus Type 1 on MSH2 (MutS homolog 2) Expression in a Rat Kidney Tissue. PMID:35741815
Deubiquitylases in developmental ubiquitin signaling and congenital diseases. PMID:33335288
Machine learning: A powerful tool for gene function prediction in plants. PMID:32765975
The oilseed rape developmental expression resource: a resource for the investigation of gene expression dynamics during the floral transition in oilseed rape. PMID:32693783
Multi-species annotation of transcriptome and chromatin structure in domesticated animals. PMID:31884969
Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development. PMID:31608120
Significant prognostic values of aquaporin mRNA expression in breast cancer. PMID:30863160
The function of miR-143, miR-145 and the MiR-143 host gene in cardiovascular development and disease. PMID:30502421
Long Noncoding RNAs in Colorectal Adenocarcinoma; an in silico Analysis. PMID:29948619
Immune cell profiling in cancer: molecular approaches to cell-specific identification. PMID:29872708
A survey of microRNA single nucleotide polymorphisms identifies novel breast cancer susceptibility loci in a case-control, population-based study of African-American women. PMID:29871690
Bioinformatics challenges and perspectives when studying the effect of epigenetic modifications on alternative splicing. PMID:29685977
ZFR coordinates crosstalk between RNA decay and transcription in innate immunity. PMID:29559679
The fungal snoRNAome. PMID:29196413
The Kohlschütter-Tönz syndrome associated gene Rogdi encodes a novel presynaptic protein. PMID:29150638
New astroglial injury-defined biomarkers for neurotrauma assessment. PMID:28816095
Single-cell RNA sequencing to explore immune cell heterogeneity. PMID:28787399
Genomewide identification of genes involved in the potato response to drought indicates functional evolutionary conservation with Arabidopsis plants. PMID:28718511
CARMIL family proteins as multidomain regulators of actin-based motility. PMID:28663287
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. PMID:28535296
Long Non-Coding RNA SNHG6 as a Potential Biomarker for Hepatocellular Carcinoma. PMID:28508329
De Novo Coding Variants Are Strongly Associated with Tourette Disorder. PMID:28472652
Morphological and Transcriptomic Analysis of a Beetle Chemosensory System Reveals a Gnathal Olfactory Center. PMID:27751175
Comprehensive genomic characterization of five canine lymphoid tumor cell lines. PMID:27639374
Gene Expression Profiling Reveals Functional Specialization along the Intestinal Tract of a Carnivorous Teleostean Fish (Dicentrarchus labrax). PMID:27610085
Withdrawn: Discovering Genes Essential to the Hypothalamic Regulation of Human Reproduction Using a Human Disease Model: Adjusting to Life in the "-Omics" Era. PMID:27454361
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki. PMID:27402679
NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease. PMID:27392431
GEE: An Informatics Tool for Gene Expression Data Explore. PMID:27200217
Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer. PMID:27078000
Multifaceted enrichment analysis of RNA-RNA crosstalk reveals cooperating micro-societies in human colorectal cancer. PMID:27067546
HNdb: an integrated database of gene and protein information on head and neck squamous cell carcinoma. PMID:27013077
Spatiotemporal variation of mammalian protein complex stoichiometries. PMID:26975353
Comprehensive Map of Molecules Implicated in Obesity. PMID:26886906
Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. PMID:26876889
Global analysis of human duplicated genes reveals the relative importance of whole-genome duplicates originated in the early vertebrate evolution. PMID:26801093
RNA Sequencing Analysis of the msl2msl3, crl, and ggps1 Mutants Indicates that Diverse Sources of Plastid Dysfunction Do Not Alter Leaf Morphology Through a Common Signaling Pathway. PMID:26734046
Mouse polyQ database: a new online resource for research using mouse models of neurodegenerative diseases. PMID:26515641
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants. PMID:26481351
Discovering Genes Essential to the Hypothalamic Regulation of Human Reproduction Using a Human Disease Model: Adjusting to Life in the "-Omics" Era. PMID:26394276
Vasodilator-stimulated phosphoprotein restricts cell-to-cell spread of Shigella flexneri at the cell periphery. PMID:26358985
In silico and in vitro evaluation of exonic and intronic off-target effects form a critical element of therapeutic ASO gapmer optimization. PMID:26338776
Homozygous loss-of-function variants in European cosmopolitan and isolate populations. PMID:26173456
The extracellular matrix: Tools and insights for the "omics" era. PMID:26163349
A reproducible approach to high-throughput biological data acquisition and integration. PMID:26157642
Database of Gene Co-Regulation (dGCR): A Web Tool for Analysing Patterns of Gene Co-regulation across Publicly Available Expression Data. PMID:25628763
Interactions with the bifunctional interface of the transcriptional coactivator DCoH1 are kinetically regulated. PMID:25538247
Tissue-specific transcriptomics, chromosomal localization, and phylogeny of chemosensory and odorant binding proteins from the red flour beetle Tribolium castaneum reveal subgroup specificities for olfaction or more general functions. PMID:25523483
The EHEC-host interactome reveals novel targets for the translocated intimin receptor. PMID:25519916
linkedISA: semantic representation of ISA-Tab experimental metadata. PMID:25472428
High dimensional biological data retrieval optimization with NoSQL technology. PMID:25435347
MicroRNA related polymorphisms and breast cancer risk. PMID:25390939
Aberrant levels of histone H3 acetylation induce spermatid anomaly in mouse testis. PMID:25326673
BioModels linked dataset. PMID:25182954
Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network. PMID:25163748
Bioinformatic approaches to augment study of epithelial-to-mesenchymal transition in lung cancer. PMID:25096367
Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk. PMID:24836286
Seminal plasma as a diagnostic fluid for male reproductive system disorders. PMID:24709963
MicroRNAs and Molecular Mechanisms of Neurodegeneration. PMID:24705162
The CO-Regulation Database (CORD): a tool to identify coordinately expressed genes. PMID:24599084
Genetic variant in SWI/SNF complexes influences hepatocellular carcinoma risk: a new clue for the contribution of chromatin remodeling in carcinogenesis. PMID:24556940
The WNT receptor FZD7 is required for maintenance of the pluripotent state in human embryonic stem cells. PMID:24474766
The EBI RDF platform: linked open data for the life sciences. PMID:24413672
A computational framework to infer human disease-associated long noncoding RNAs. PMID:24392133
Using expression profiling to understand the effects of chronic cadmium exposure on MCF-7 breast cancer cells. PMID:24376830
Aquaporin water channels in the mammary gland: from physiology to pathophysiology and neoplasia. PMID:24338153
CellFinder: a cell data repository. PMID:24304896
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. PMID:24304889
The Reactome pathway knowledgebase. PMID:24243840
Gramene 2013: comparative plant genomics resources. PMID:24217918
SPIEDw: a searchable platform-independent expression database web tool. PMID:24199845
BloodChIP: a database of comparative genome-wide transcription factor binding profiles in human blood cells. PMID:24185696
CAST-ChIP maps cell-type-specific chromatin states in the Drosophila central nervous system. PMID:24095734
yApoptosis: yeast apoptosis database. PMID:24082050
Aging-induced proteostatic changes in the rat hippocampus identify ARP3, NEB2 and BRAG2 as a molecular circuitry for cognitive impairment. PMID:24069387
The human urine metabolome. PMID:24023812
Integration of cardiac proteome biology and medicine by a specialized knowledgebase. PMID:23965338
An integrative computational analysis provides evidence for FBN1-associated network deregulation in trisomy 21. PMID:23951402
Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data. PMID:23895370
Analysis Tool Web Services from the EMBL-EBI. PMID:23671338
Toxicological effects of the different substances in tobacco smoke on human embryonic development by a systems chemo-biology approach. PMID:23637898
Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines. PMID:23511206
Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. PMID:23402223
UniChem: a unified chemical structure cross-referencing and identifier tracking system. PMID:23317286
Reverse engineering: a key component of systems biology to unravel global abiotic stress cross-talk. PMID:23293646
Reuse of public genome-wide gene expression data. PMID:23269463
Multiscale integration of -omic, imaging, and clinical data in biomedical informatics. PMID:23231990
ArrayExpress update--trends in database growth and links to data analysis tools. PMID:23193272
InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor. PMID:23158523
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis. PMID:23143109
Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome. PMID:23049964
Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans. PMID:22991088
omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification. PMID:22893372
Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL. PMID:22541594
A nonsense mutation in the human homolog of Drosophila rogdi causes Kohlschutter-Tonz syndrome. PMID:22482807 - http://dx.doi.org/10.1093/nar/gkt1270
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More detailed information about this field from each metasource.
differential gene expression analysis
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
rna-seq
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
biological research
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
biomedical research
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
cell type
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
microarray
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
experimental design and studies
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
Tags
More detailed information about this field from each metasource.
differential gene expression analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.256341
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: Expression Atlas; Expression Atlas; DOI: https://doi.org/10.25504/FAIRsharing.f5zx00; Last edited: Feb. 23, 2021, 3:51 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
rna-seq
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
biological research
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
biomedical research
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
cell type
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
microarray
metasource: re3data.orgversion: re3data.org: Expression Atlas; editing status 2019-04-23; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3Z888 last accessed: 2022-11-04
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.256341
experimental design and studies
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.256341
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:04.256341
differential gene expression analysis gene expression gene expression rna sequence microarray data and other gene expression rna sequence biological research biomedical research cell type genomics microarray model organisms experimental design and studies functional, regulatory and non-coding rna
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