Hymenoptera Genome Database

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Hymenoptera Genome Database

metasource: Fairsharing.org
version: None

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HGD

metasource: Fairsharing.org
version: None

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Hymenoptera Genome

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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The Hymenoptera Genome Database (HGD)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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hgd

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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Other names: HGD, Hymenoptera Genome, The Hymenoptera Genome Database (HGD), hgd

The Hymenoptera Genome Database (HGD) is a genome informatics resource that supports the research of insects of the order Hymenoptera (e.g. bees, wasps, ants). HGD is divided into three main divisions: BeeBase, which hosts bee genomes and the Bee Pests and Pathogens resource; NasoniaBase, which hosts the genome of the Jewel wasp (Nasonia vitripennis); and the Ant Genomes Portal, which hosts the genomes of several ant species.

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Publications

More detailed information about this field from each metasource. ×

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera
PMID: 21071397

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
PMID: 26578564

metasource: Fairsharing.org
version: None

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http://nar.oxfordjournals.org/content/39/suppl_1/D658

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera PubMed citations: 77.

  77 articles citing: Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

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  A combined RAD-Seq and WGS approach reveals the genomic basis of yellow color variation in bumble bee Bombus terrestris. PMID:33846496

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  Striking parallels between dorsoventral patterning in Drosophila and Gryllus reveal a complex evolutionary history behind a model gene regulatory network. PMID:33783353

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  Honey Bee and Bumble Bee Antiviral Defense. PMID:30060518

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  Signatures of DNA Methylation across Insects Suggest Reduced DNA Methylation Levels in Holometabola. PMID:29697817

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  Characterization and expression profiling of serine protease inhibitors in the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). PMID:28196471

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  Standard Codon Substitution Models Overestimate Purifying Selection for Nonstationary Data. PMID:28175284

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  A variant reference data set for the Africanized honeybee, Apis mellifera. PMID:27824336

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  Lateralization of gene expression in the honeybee brain during olfactory learning. PMID:27703214

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  OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis. PMID:27561358

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  Phylogenomics and Divergence Dating of Fungus-Farming Ants (Hymenoptera: Formicidae) of the Genera Sericomyrmex and Apterostigma. PMID:27466804

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  Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia. PMID:27380029

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  ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. PMID:27242037

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  Structure and function of gene regulatory networks associated with worker sterility in honeybees. PMID:26925214

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  Transcriptome Analysis and Discovery of Genes Relevant to Development in Bradysia odoriphaga at Three Developmental Stages. PMID:26891450

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  Ligand selectivity in tachykinin and natalisin neuropeptidergic systems of the honey bee parasitic mite Varroa destructor. PMID:26817786

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  Differential Properties of Venom Peptides and Proteins in Solitary vs. Social Hunting Wasps. PMID:26805885

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  InsectBase: a resource for insect genomes and transcriptomes. PMID:26578584

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  Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine. PMID:26578564

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  Analysis of 5' gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals. PMID:26482678

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  WaspAtlas: a Nasonia vitripennis gene database and analysis platform. PMID:26452372

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  Diversification of the ant odorant receptor gene family and positive selection on candidate cuticular hydrocarbon receptors. PMID:26306879

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  Trends in genome dynamics among major orders of insects revealed through variations in protein families. PMID:26251035

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  Transcriptome of the egg parasitoid Fopius arisanus: an important biocontrol tool for Tephritid fruit fly suppression. PMID:26244090

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  Evolutionary history of the Azteca-like mariner transposons and their host ants. PMID:26195134

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  ProtoBug: functional families from the complete proteomes of insects. PMID:25911153

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  The genomes of two key bumblebee species with primitive eusocial organization. PMID:25908251

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  Characterization and expression profiling of glutathione S-transferases in the diamondback moth, Plutella xylostella (L.). PMID:25887517

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  Amino acid transporter expansions associated with the evolution of obligate endosymbiosis in sap-feeding insects (Hemiptera: sternorrhyncha). PMID:25887093

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  The expanding genetic toolbox of the wasp Nasonia vitripennis and its relatives. PMID:25855650

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  Genetic architecture of a hormonal response to gene knockdown in honey bees. PMID:25596612

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  Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing. PMID:25553907

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  OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. PMID:25428351

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  The red imported fire ant (Solenopsis invicta Buren) kept Y not F: predicted sNPY endogenous ligands deorphanize the short NPF (sNPF) receptor. PMID:25310341

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  Phylogenetic analyses and characterization of RNase X25 from Drosophila melanogaster suggest a conserved housekeeping role and additional functions for RNase T2 enzymes in protostomes. PMID:25133712

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  Genome-wide comparison of genes involved in the biosynthesis, metabolism, and signaling of juvenile hormone between silkworm and other insects. PMID:25071411

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  Insights into the evolution and domain structure of Ataxin-2 proteins across eukaryotes. PMID:25027299

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  NeuroPID: a classifier of neuropeptide precursors. PMID:24792159

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  Patterns of positive selection in seven ant genomes. PMID:24782441

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  Gene co-citation networks associated with worker sterility in honey bees. PMID:24669853

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  Components of the dorsal-ventral pathway also contribute to anterior-posterior patterning in honeybee embryos (Apis mellifera). PMID:24620747

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  Transcriptome analysis in venom gland of the predatory giant ant Dinoponera quadriceps: insights into the polypeptide toxin arsenal of hymenopterans. PMID:24498135

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  Finding the missing honey bee genes: lessons learned from a genome upgrade. PMID:24479613

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  Whole-genome DNA methylation profile of the jewel wasp (Nasonia vitripennis). PMID:24381191

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  The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes. PMID:24359881

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  Chronic parasitization by Nosema microsporidia causes global expression changes in core nutritional, metabolic and behavioral pathways in honey bee workers (Apis mellifera). PMID:24245482

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  Development of a Nasonia vitripennis outbred laboratory population for genetic analysis. PMID:24215457

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  Function and evolution of DNA methylation in Nasonia vitripennis. PMID:24130511

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  Transcriptome profiling of Nasonia vitripennis testis reveals novel transcripts expressed from the selfish B chromosome, paternal sex ratio. PMID:23893741

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  Transcriptome characterisation of the ant Formica exsecta with new insights into the evolution of desaturase genes in social hymenoptera. PMID:23874539

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  KONAGAbase: a genomic and transcriptomic database for the diamondback moth, Plutella xylostella. PMID:23837716

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  Identification of novel arthropod vector G protein-coupled receptors. PMID:23705687

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  Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. PMID:23636946

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  Computational identification of functional introns: high positional conservation of introns that harbor RNA genes. PMID:23605046

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  Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum. PMID:23445305

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  Behavioural and genetic analyses of Nasonia shed light on the evolution of sex pheromones. PMID:23407492

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  Comparative genomics of chemosensory protein genes reveals rapid evolution and positive selection in ant-specific duplicates. PMID:23403962

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  Evolutionary history of eukaryotic α-glucosidases from the α-amylase family. PMID:23397242

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  Mechanisms and dynamics of orphan gene emergence in insect genomes. PMID:23348040

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  A novel family of terminal-repeat retrotransposon in miniature (TRIM) in the genome of the red harvester ant, Pogonomyrmex barbatus. PMID:23285291

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  The BioGRID interaction database: 2013 update. PMID:23203989

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  Fife, a Drosophila Piccolo-RIM homolog, promotes active zone organization and neurotransmitter release. PMID:23197698

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  OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. PMID:23180791

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  Comparing alternative methods for holding virgin honey bee queens for one week in mailing cages before mating. PMID:23166832

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  Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. PMID:22952454

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  Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis. PMID:22747707

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  A beginner's guide to eukaryotic genome annotation. PMID:22510764

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  Social transfer of pathogenic fungus promotes active immunisation in ant colonies. PMID:22509134

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  Metabolic and proteomic profiling of diapause in the aphid parasitoid Praon volucre. PMID:22389713

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  Evolution of a large, conserved, and syntenic gene family in insects. PMID:22384409

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  MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. PMID:22192575

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  Pathogen-origin horizontally transferred genes contribute to the evolution of Lepidopteran insects. PMID:22151541

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  A remarkably stable TipE gene cluster: evolution of insect Para sodium channel auxiliary subunits. PMID:22098672

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  Relaxed selection is a precursor to the evolution of phenotypic plasticity. PMID:21911372

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  Genomic sequence around butterfly wing development genes: annotation and comparative analysis. PMID:21909358

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  Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects. PMID:21843315

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  A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues. PMID:21639908

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  The phylogenetic origin of oskar coincided with the origin of maternally provisioned germ plasm and pole cells at the base of the Holometabola. PMID:21552321
• Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine PubMed citations: 60.

  60 articles citing: Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

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  HumanMine: advanced data searching, analysis and cross-species comparison. PMID:35820040

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  Nuclear translocation of vitellogenin in the honey bee (Apis mellifera). PMID:35309709

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  A peptide toxin in ant venom mimics vertebrate EGF-like hormones to cause long-lasting hypersensitivity in mammals. PMID:35131940

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  Searching beyond the streetlight: Neonicotinoid exposure alters the neurogenomic state of worker honey bees. PMID:35003705

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  The evolution of insect visual opsin genes with specific consideration of the influence of ocelli and life history traits. PMID:34996358

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  Thrice out of Asia and the adaptive radiation of the western honey bee. PMID:34860547

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  InsectBase 2.0: a comprehensive gene resource for insects. PMID:34792158

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  Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses. PMID:34747465

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  Convergent Loss of Chemoreceptors across Independent Origins of Slave-Making in Ants. PMID:34668533

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  Multi-tiered analyses of honey bees that resist or succumb to parasitic mites and viruses. PMID:34610790

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  The genomic basis of army ant chemosensory adaptations. PMID:34582590

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  Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes. PMID:34442314

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  Conservation genomics reveals pesticide and pathogen exposure in the declining bumble bee Bombus terricola. PMID:34181797

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  Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole-genome sequences. PMID:33970494

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  The genomic basis of evolutionary differentiation among honey bees. PMID:33947700

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  Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens. PMID:33944936

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  Reproductive activation in honeybee (Apis mellifera) workers protects against abiotic and biotic stress. PMID:33678021

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  Universal fluorescence in situ hybridization (FISH) protocol for mapping repetitive DNAs in insects and other arthropods. PMID:33625598

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  Local Variation in Recombination Rates of the Honey Bee (Apis mellifera) Genome among Samples from Six Disparate Populations. PMID:33311731

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  Deformed Wing Virus in Two Widespread Invasive Ants: Geographical Distribution, Prevalence, and Phylogeny. PMID:33203145

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  Colony-Level Effects of Amygdalin on Honeybees and Their Microbes. PMID:33187240

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  Genome-wide patterns of differentiation within and among U.S. commercial honey bee stocks. PMID:33032523

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  Transcriptomic signatures of cold adaptation and heat stress in the winter ant (Prenolepis imparis). PMID:33002025

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  High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus. PMID:32859687

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  Saccharomyces cerevisiae fermentation products (SCFP) stabilize the ruminal microbiota of lactating dairy cows during periods of a depressed rumen pH. PMID:32653000

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  Interaction of Varroa destructor and Sublethal Clothianidin Doses during the Larval Stage on Subsequent Adult Honey Bee (Apis mellifera L.) Health, Cellular Immunity, Deformed Wing Virus Levels and Differential Gene Expression. PMID:32517245

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  An Integrated Proteomic and Transcriptomic Analysis Reveals the Venom Complexity of the Bullet Ant Paraponera clavata. PMID:32422990

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  Disparate expression specificities coded by a shared Hox-C enhancer. PMID:32342858

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  Characteristic and Functional Study of Intersex, a Gene Related to Female Fertility in Bemisia tabaci. PMID:32158397

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  Genome Architecture Facilitates Phenotypic Plasticity in the Honeybee (Apis mellifera). PMID:32134461

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  Evaluation of reference genes for gene expression analysis by real-time quantitative PCR (qPCR) in three stingless bee species (Hymenoptera: Apidae: Meliponini). PMID:31776359

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  Sequence-Based Prediction of Olfactory Receptor Responses. PMID:31665762

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  Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles. PMID:31590243

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  Cross-Kingdom Analysis of Diversity, Evolutionary History, and Site Selection within the Eukaryotic Macrophage Migration Inhibitory Factor Superfamily. PMID:31554205

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  Immediate Transcriptional Response to a Temperature Pulse under a Fluctuating Thermal Regime. PMID:31173075

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  Honey bee predisposition of resistance to ubiquitous mite infestations. PMID:31127129

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  Transcriptomic responses to diet quality and viral infection in Apis mellifera. PMID:31117959

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  A comparative analysis of methods for de novo assembly of hymenopteran genomes using either haploid or diploid samples. PMID:31019201

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  Rhodnius prolixus: Identification of missing components of the IMD immune signaling pathway and functional characterization of its role in eliminating bacteria. PMID:30943246

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  Effects of sublethal doses of clothianidin and/or V. destructor on honey bee (Apis mellifera) self-grooming behavior and associated gene expression. PMID:30914660

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  Genome-Wide Identification and Expression Profiling of Wnt Family Genes in the Silkworm, Bombyx mori. PMID:30862048

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  Apollo: Democratizing genome annotation. PMID:30726205

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  Sequence and structural properties of circular RNAs in the brain of nurse and forager honeybees (Apis mellifera). PMID:30683059

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  Parasitoid Jewel Wasp Mounts Multipronged Neurochemical Attack to Hijack a Host Brain. PMID:30293061

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  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679

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  Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection. PMID:30134827

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  Pattern of DNA Methylation in Daphnia: Evolutionary Perspective. PMID:30060190

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  Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei). PMID:29496749

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  HsTRPA of the Red Imported Fire Ant, Solenopsis invicta, Functions as a Nocisensor and Uncovers the Evolutionary Plasticity of HsTRPA Channels. PMID:29445768

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  Gene Expression Profile Analysis is Directly Affected by the Selected Reference Gene: The Case of Leaf-Cutting Atta Sexdens. PMID:29419794

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  The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera. PMID:29281964

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  Transcriptome sequencing reveals high isoform diversity in the ant Formica exsecta. PMID:29177112

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  The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma. PMID:28701376

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  Phosphoproteome Analysis Reveals Phosphorylation Underpinnings in the Brains of Nurse and Forager Honeybees (Apis mellifera). PMID:28512345

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  Contrasting Sex-and Caste-Dependent piRNA Profiles in the Transposon Depleted Haplodiploid Honeybee Apis mellifera. PMID:28472327

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  The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636

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  OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. PMID:27899580

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  Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera. PMID:27540087

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  Composition and genomic organization of arthropod Hox clusters. PMID:27168931

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  A comparative cytogenetic study of Drosophila parasitoids (Hymenoptera, Figitidae) using DNA-binding fluorochromes and FISH with 45S rDNA probe. PMID:27150102
• http://nar.oxfordjournals.org/content/39/suppl_1/D658

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More detailed information about this field from each metasource. ×

genome

metasource: Fairsharing.org
version: None

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genome visualization

metasource: Fairsharing.org
version: None

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genomics databases (non-vertebrate)

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

invertebrate genome databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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phylogeny

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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database management

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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genomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:32.749035

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genome genome visualization genomics invertebrate genome gene transcripts model organisms phylogeny data management genomics