Tag: invertebrate genome


Found 55 sources
Source Match ReputationScore*

WormBase


WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and related nematod ...
100%

VectorBase


VectorBase is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes providing an integrated resource for the research community. Currently, VectorBase contain ...
92%

DRSC Functional Genomics Resources


DRSC Functional Genomics Resources (DRSC-FGR) began as the Drosophila RNAi Screening Center (DRSC), founded by Prof. Norbert Perrimon in 2003, and the Transgenic RNAi Project (TRiP), founded by Prof. Perrimon in 2008. DRSC-FGR has been previously kno ...
85%

FlyAtlas 2


FlyAtlas 2 is the RNA-Seq successor to the original FlyAtlas (which was based on microarray analysis). Specifically, FlyAtlas 2 now provides access to: transcript information, sex-specific data for adult somatic tissues, and micro-RNA genes. FlyAtlas ...
82%

FlyMine


FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge.
80%

TriTrypDB


TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas ...
79%

i5k [email protected]


The i5k [email protected] has two main goals. First, it aims to help the i5k ‘data producers’, in particular ‘orphaned’ groups without the technical or financial means for genome hosting, at the interface of sequence retrieval and analysis. Specifically, ...
76%

ArachnoServer: Spider toxin database


ArachnoServer is a manually curated database containing information on the sequence, three-dimensional structure, and biological activity of protein toxins derived from spider venom.
74%

Regulatory Element Database for Drosophila


REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly regulatory elements along with their DNA sequence ...
71%

BeetleBase


BeetleBase is a community resource for Tribolium genetics, genomics and developmental biology. The database is built on the Chado generic data model, and is able to store various types of data, ranging from genome sequences to mutant phenotypes.
68%

Hymenoptera Genome Database


The Hymenoptera Genome Database (HGD) is a genome informatics resource that supports the research of insects of the order Hymenoptera (e.g. bees, wasps, ants). HGD is divided into three main divisions: BeeBase, which hosts bee genomes and the Bee Pes ...
67%

Aphid Genomics Database


The Aphid Genome Database's aim is to improve the current pea aphid genome assembly and annotation, and to provide new aphid genome sequences as well as tools for analysis of these genomes.
64%

PlanMine


PlanMine is an integrated web resource of data & tools to mine Planarian biology.
63%

Daphnia Water Flea Genome Database


wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and Daphnia magna, because of the broad set of genomic tools that have already been developed for these animals.
60%

StellaBase


StellaBase is the Nematostella vectensis genomics database.
59%

WorfDB - Worm ORF Database


Predicted proteins from C. elegans
59%

SpodoBase


SpodoBase is an integrated database for the genomics of the Lepidoptera Spodoptera frugiperda. It is a publicly available structured database with insect pest sequences which will allow identification of a number of genes and comprehensive cloning of ...
59%

FlyTF


FlyTF (v2) is a manually curated catalogue of Drosophila site-specific transcription factors (TFs). It integrates proteins identified as DNA-binding TFs by computational prediction based on structural domain assignments, and experimentally verified T ...
58%

RNAiDB


RNAiDB provides access to results from RNAi interference studies in C. elegans , including images, movies, phenotypes, and graphical maps.
57%

CuticleDB


Structural proteins of Arthropod cuticle
57%

Drosophila Species Genomes


The D. melanogaster and eight other eukaryote model genomes, and gene predictions from several groups. Summaries of essential genome statistics include sizes, genes found and predicted, homology among genomes, phylogenetic trees of species, and compa ...
56%

Ciona intestinalis Protein Database


CIPRO is an integrated protein that has been developed to provide widespread information of the proteins expressed in the ascidian Ciona intestinalis, especially for the researcher who wants to get advance and useful information for starting biologic ...
56%

Nematodes.org


Wiki for coordinating nematode sequencing projects
56%

Insect Microsatellite Database


InSatDb, unlike many other microsatellite databases that cater largely to the needs of microsatellites as markers, presents an interactive interface to query information regarding microsatellite characteristics of five fully sequenced insect genomes ...
55%

Drosophila polymorphism database


Drosophila Polymorphism Database, is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Drosophila genus. It allows, for the first time, the search for any polymorphic set according to different par ...
54%

C. elegans Natural Diversity Resource


Whole-genome sequence data, variant calls, and annotations of natural genetic variation in C. elegans species.
46%

FlyTrap


Drosophila transgenic lines created using an intron protein trap strategy
46%

iBeetle-Base


Phenotypes of a large scale RNAi screen in the red flour beetle Tribolium castaneum
46%

GadFly


Genome annotation database of Drosophila
43%

Virus Taxonomy


43%

InsectBase


Insect genomes and transcriptomes
43%

NEMBASE


Nematode sequence and functional data database
43%

SmedGD


The Schmidtea mediterranea genome database
43%

WormQTL


Natural variation data in Caenorhabditis spp.
43%

LumbriBASE


ESTs of the earthworm Lumbricus rubellus
43%

FlyBrain


Database of the Drosophila nervous system
43%

FLYSNP


SNP data for Drosophila melanogaster
43%

FlyAtlas


FlyAtlas: the Drosophila gene expression atlas
43%

AppaDB


A database on the nematode Pristionchus pacificus
43%

Sebida


Sex bias in insect gene expression database
43%

InterActive Fly


Drosophila genes and their roles in development
43%

UTRome


3'UTRs and their functional elements in C. elegans
43%

Helminth.net


Parasitic nematode sequencing project
43%

Digital Development Database


Developmental phenomics, cell-specific gene functions and cell differentiation in C. elegans
43%

HOINVGEN


INVHOGEN (INVertebrate HOmologous GENes) is a database combining the available invertebrate protein genes from UniProt (consisting of Swiss-Prot, TrEMBL) into gene families. For each family INVHOGEN provides a multiple protein alignment, a maximum li ...
43%

MonarchBase


The monarch butterfly (Danaus plexippus) is emerging as a model organism to study the mechanisms of circadian clocks and animal navigation, and the genetic underpinnings of long-distance migration (1). MonarchBase was developed as a public database f ...
43%

FlyEx


FlyEx is a spatiotemporal atlas of segmentation gene expression. The important feature that sets FlyEx apart from other spatiotemporal atlases is the availability of highly accurate quantitative gene expression data. FlyEx supports operations on ima ...
43%

Pristionchus.org


Pristionchus pacificus is a nematode (roundworm) in the family Diplogastridae. Its last common ancestor with Caenorhabditis elegans lived 200-300 Mio years ago. Pristionchus pacificus was described as a novel species in 1996 and fulfills many technic ...
43%

SchistoDB


SchistoDB (http://SchistoDB.net) is a genomic database for the parasitic organism Schistosoma mansoni, one of the major causative agents of schistosomiasis worldwide (1,2). It currently incorporates sequences and annotation for S. mansoni in a single ...
43%

MitoDrome


MitoDrome is a database born with the aim of annotating D. melanogaster nuclear genes encoding mitochondrial proteins and contributing to the functional characterisation of these genes to support studies on human diseases related to mitochondrial dys ...
43%

WormBook


WormBook (http://www.wormbook.org) is an open-access, online collection of original, peer-reviewed chapters on the biology of C. elegans and related nematodes. It contains over 100 chapters, covering nearly every aspect of C. elegans research, from c ...
43%

Comparasite


Comparasite is a database for comparative studies of transcriptomes of parasites, which are defined by the full-length cDNAs from various apicomplexan parasites. It integrates seven individual databases consisting of numerous full-length cDNA clones ...
43%

SilkSatDb


SilkSatDb is a comprehensive relational database of silkworm microsatellites that gives description of abundance, frequency and distribution of different classes of microsatellites in autosomes, Z-chromosome and expressed sequence tags (ESTs). Alleli ...
43%

WDDD - Worm Developmental Dynamics Database


Worm Developmental Dynamics Database (WDDD) stores a collection of quantitative information about cell division dynamics in early Caenorhabditis elegans embryos with single genes silenced by RNA-mediated interference (RNAi). The information was obtai ...
43%

KinG: Kinases in Genomes


Protein kinases (PKs), one of the largest and functionally divergent gene families, mediate most of the signal transduction pathways in eukaryotic cells by the modification of substrate activity. They function as key regulators of a number of biologi ...
43%

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