Four novel candidate causal variants for deficient homozygous haplotypes in Holstein cattle.
PMID:35361830
Variability in Global DNA Methylation Rate Across Tissues and Over Time in Sheep.
PMID:35360841
Significant Upregulation of HERV-K (HML-2) Transcription Levels in Human Lung Cancer and Cancer Cells.
PMID:35359739
A beginner's guide to manual curation of transposable elements.
PMID:35354491
Rethinking Protein Drug Design with Highly Accurate Structure Prediction of Anti-CRISPR Proteins.
PMID:35337108
In Vitro Analysis of Biological Activity of Circulating Cell-Free DNA Isolated from Blood Plasma of Schizophrenic Patients and Healthy Controls.
PMID:35328103
An Expanding Toolkit for Heterochromatin Repair Studies.
PMID:35328082
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies.
PMID:35327572
Transposable Elements: Major Players in Shaping Genomic and Evolutionary Patterns.
PMID:35326499
TrkB Truncated Isoform Receptors as Transducers and Determinants of BDNF Functions.
PMID:35321093
Potential role of KRAB-ZFP binding and transcriptional states on DNA methylation of retroelements in human male germ cells.
PMID:35315771
Teaching cancer imaging in the era of precision medicine: Looking at the big picture.
PMID:35309874
The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes.
PMID:35302893
Short open reading frames (sORFs) and microproteins: an update on their identification and validation measures.
PMID:35300685
FDA-led consortium studies advance quality control of targeted next generation sequencing assays for precision oncology.
PMID:35282311
MER4 endogenous retrovirus correlated with better efficacy of anti-PD1/PD-L1 therapy in non-small cell lung cancer.
PMID:35277462
Principles for the design of multicellular engineered living systems.
PMID:35274072
Indicators of Successful Career Transitions from Physical Sciences and Engineering to Biomedical Research.
PMID:35273460
Inter-Species Rescue of Mutant Phenotype-The Standard for Genetic Analysis of Human Genetic Disorders in Drosophila melanogaster Model.
PMID:35269756
Transposable Elements and Human Diseases: Mechanisms and Implication in the Response to Environmental Pollutants.
PMID:35269693
Constitutive Heterochromatin in Eukaryotic Genomes: A Mine of Transposable Elements.
PMID:35269383
ALU repeat as potential molecular marker in the detection and prognosis of different cancer types: A systematic review.
PMID:35251637
A novel concept of human antiviral protection: It's all about RNA (Review).
PMID:35251616
Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells.
PMID:35243263
Transposable element landscapes in aging Drosophila.
PMID:35239675
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
PMID:35234489
Roles of transposable elements in the regulation of mammalian transcription.
PMID:35228718
A guide for the diagnosis of rare and undiagnosed disease: beyond the exome.
PMID:35220969
The Complexity of the Mammalian Transcriptome.
PMID:35220563
Expanding Gene-Editing Potential in Crop Improvement with Pangenomes.
PMID:35216392
Characterizing mobile element insertions in 5675 genomes.
PMID:35212372
Low Expression of ZNF154 is Related to Poor Prognosis in Gastric Cancer.
PMID:35210862
Insights into the Association Between QSER1 and M2 Macrophages and Remarkable Malignancy Characteristics in Hepatocellular Carcinoma.
PMID:35210841
To Be or Not to Be Mesophilic, That Is the Question for Aeromonas salmonicida.
PMID:35208695
The Ribosomal Protein RpL22 Interacts In Vitro with 5'-UTR Sequences Found in Some Drosophila melanogaster Transposons.
PMID:35205350
Splicing Variants, Protein-Protein Interactions, and Drug Targeting in Hutchinson-Gilford Progeria Syndrome and Small Cell Lung Cancer.
PMID:35205210
Discordant Genome Assemblies Drastically Alter the Interpretation of Single-Cell RNA Sequencing Data Which Can Be Mitigated by a Novel Integration Method.
PMID:35203259
Cryo-EM advances in RNA structure determination.
PMID:35197441
[Web-based gene expression analysis-paving the way to decode healthy and diseased ocular tissue].
PMID:35194679
Functional noncoding SNPs in human endothelial cells fine-map vascular trait associations.
PMID:35193936
An Alu insertion map of the Indian population: identification and analysis in 1021 genomes of the IndiGen project.
PMID:35178516
Particulate matter-induced hypomethylation of Alu and LINE1 in normal human bronchial epithelial cells and epidermal keratinocytes.
PMID:35172897
MxB inhibits long interspersed element type 1 retrotransposition.
PMID:35171907
Machine learning for multi-omics data integration in cancer.
PMID:35169688
The Absence of Retroelement Activity Is Characteristic for Childhood Acute Leukemias and Adult Acute Lymphoblastic Leukemia.
PMID:35163677
A Systematic Review of Expression and Immunogenicity of Human Endogenous Retroviral Proteins in Cancer and Discussion of Therapeutic Approaches.
PMID:35163254
Polycystic Ovary Syndrome: An Evolutionary Adaptation to Lifestyle and the Environment.
PMID:35162359
Disparities in Lung Cancer: miRNA Isoform Characterization in Lung Adenocarcinoma.
PMID:35159038
Bitter taste receptors: Genes, evolution and health.
PMID:35154779
Genetic variation of pharmacogenomic VIP variants in the Chinese Li population: an updated research.
PMID:35146537
Emerging roles of circular RNAs in retinal diseases.
PMID:35142661
Analysis of Pathogenic Pseudoexons Reveals Novel Mechanisms Driving Cryptic Splicing.
PMID:35140743
Functional Precision Medicine: Putting Drugs on Patient Cancer Cells and Seeing What Happens.
PMID:35140175
The mouse resource at National Resource Center for Mutant Mice.
PMID:35138443
WAFNRLTG: A Novel Model for Predicting LncRNA Target Genes Based on Weighted Average Fusion Network Representation Learning Method.
PMID:35127729
Translational Informatics for Natural Products as Antidepressant Agents.
PMID:35127696
Mouse genomic and cellular annotations.
PMID:35124726
Exposome and Skin: Part 1. Bibliometric Analysis and Review of the Impact of Exposome Approaches on Dermatology.
PMID:35112325
Highly sensitive diagnostic method for colorectal cancer using the ratio of free DNA fragments in serum.
PMID:35111495
ATF7ip Targets Transposable Elements for H3K9me3 Deposition to Modify CD8+ T Cell Effector and Memory Responses.
PMID:35110421
Genomic deciphering of sex determination and unique immune system of a potential model species rare minnow (Gobiocypris rarus).
PMID:35108042
Four groups of type 2 diabetes contribute to the etiological and clinical heterogeneity in newly diagnosed individuals: An IMI DIRECT study.
PMID:35106505
LncRNA Tug1 maintains blood-testis barrier integrity by modulating Ccl2 expression in high-fat diet mice.
PMID:35103851
Long Noncoding RNA Mediated Regulation in Human Embryogenesis, Pluripotency, and Reproduction.
PMID:35103065
Context dependency of nucleotide probabilities and variants in human DNA.
PMID:35100973
Analysis of epigenetic features characteristic of L1 loci expressed in human cells.
PMID:35100410
Caenorhabditis elegans transposable elements harbor diverse transcription factor DNA-binding sites.
PMID:35088854
Shaping the Innate Immune Response Through Post-Transcriptional Regulation of Gene Expression Mediated by RNA-Binding Proteins.
PMID:35087521
Exploring clinical implications and role of non-coding RNAs in lung carcinogenesis.
PMID:35076850
A simple guide to de novo transcriptome assembly and annotation.
PMID:35076693
HERV-W Envelope Triggers Abnormal Dopaminergic Neuron Process through DRD2/PP2A/AKT1/GSK3 for Schizophrenia Risk.
PMID:35062349
Endogenous Retroviruses Provide Protection Against Vaginal HSV-2 Disease.
PMID:35058919
Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics.
PMID:35054423
Molecular Mechanisms in Pentanucleotide Repeat Diseases.
PMID:35053321
Recent Advances in RNA Therapy and Its Carriers to Treat the Single-Gene Neurological Disorders.
PMID:35052837
Genome-wide perturbations of Alu expression and Alu-associated post-transcriptional regulations distinguish oligodendroglioma from other gliomas.
PMID:35042936
Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life.
PMID:35042810
Darwinian genomics and diversity in the tree of life.
PMID:35042807
Threatened Species Initiative: Empowering conservation action using genomic resources.
PMID:35042806
Standards recommendations for the Earth BioGenome Project.
PMID:35042802
Why sequence all eukaryotes?
PMID:35042801
LINE1 are spliced in non-canonical transcript variants to regulate T cell quiescence and exhaustion.
PMID:35039641
Core promoter mutation contributes to abnormal gene expression in bladder cancer.
PMID:35033028
GC content of plant genes is linked to past gene duplications.
PMID:35025913
Identification of human gene research articles with wrongly identified nucleotide sequences.
PMID:35022248
Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome.
PMID:35022065
Automated prediction of the clinical impact of structural copy number variations.
PMID:35017614
Canonical WNT signaling-dependent gating of MYC requires a noncanonical CTCF function at a distal binding site.
PMID:35017527
Mechanism for inverted-repeat recombination induced by a replication fork barrier.
PMID:35013185
PBRM1 Inactivation Promotes Upregulation of Human Endogenous Retroviruses in a HIF-Dependent Manner.
PMID:35013001
Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species.
PMID:35007277
The evolution of knowledge on genes associated with human diseases.
PMID:35005554
Cohort Profile: The Alliance for Maternal and Newborn Health Improvement (AMANHI) biobanking study.
PMID:34999881
The characteristics of early-stage research into human genes are substantially different from subsequent research.
PMID:34990452
Cure and Long-Term Remission Strategies.
PMID:34985678
Assessing reproducibility of inherited variants detected with short-read whole genome sequencing.
PMID:34980216
Firing up Cold Tumors-Targeting the Epigenetic Machinery to Enhance Cancer Immunotherapy.
PMID:34968298
Epigenetic Regulation of the Non-Coding Genome: Opportunities for Immuno-Oncology.
PMID:34968293
EZH2 suppresses endogenous retroviruses and an interferon response in cancers.
PMID:34966479
Structure, Activity, and Function of SETMAR Protein Lysine Methyltransferase.
PMID:34947873
Chromatography-Free Purification Strategies for Large Biological Macromolecular Complexes Involving Fractionated PEG Precipitation and Density Gradients.
PMID:34947821
Endogenous Retroviral Elements in Human Development and Central Nervous System Embryonal Tumors.
PMID:34945804
Expression of Endogenous Retroviral RNA in Prostate Tumors has Prognostic Value and Shows Differences among Americans of African Versus European/Middle Eastern Ancestry.
PMID:34944967
Methylation Markers in Cutaneous Melanoma: Unravelling the Potential Utility of Their Tracking by Liquid Biopsy.
PMID:34944843
Reverse Genetic Screen for Deleterious Recessive Variants in the Local Simmental Cattle Population of Switzerland.
PMID:34944310
Transgenic Model Systems Have Revolutionized the Study of Disease.
PMID:34941457
Long-range promoter-enhancer contacts are conserved during evolution and contribute to gene expression robustness.
PMID:34930799
Molecular Diagnostics for Ocular Infectious Diseases: LXXVIII Edward Jackson Memorial Lecture.
PMID:34921773
Human endogenous retroviruses (HERV) and non-HERV viruses incorporated into the human genome and their role in the development of autoimmune diseases.
PMID:34917914
Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success.
PMID:34915862
Gauging the role and impact of drug interactions and repurposing in neurodegenerative disorders.
PMID:34909657
The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites.
PMID:34908915
Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era.
PMID:34901902
A Method for Localizing Non-Reference Sequences to the Human Genome.
PMID:34890159
Targeted insertion of large genetic payloads using cas directed LINE-1 reverse transcriptase.
PMID:34880381
Transcription factor network analysis based on single cell RNA-seq identifies that Trichostatin-a reverses docetaxel resistance in prostate Cancer.
PMID:34879849
DNA Profiling in Forensic Science: A Review.
PMID:34877570
Human endogenous retroviruses in development and disease.
PMID:34849202
Chronic cortisol differentially impacts stem cell-derived astrocytes from major depressive disorder patients.
PMID:34848679
Advances in Non-Coding RNA Sequencing.
PMID:34842804
DNA sequencing: an overview of solid-state and biological nanopore-based methods.
PMID:34840616
From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo.
PMID:34837040
Pathophysiological role of growth differentiation factor 15 (GDF15) in obesity, cancer, and cachexia.
PMID:34836750
Stochastic Effects in Retrotransposon Dynamics Revealed by Modeling under Competition for Cellular Resources.
PMID:34833085
Diversity-Oriented Synthesis: Amino Acetophenones as Building Blocks for the Synthesis of Natural Product Analogs.
PMID:34832909
The Evolutionary Volte-Face of Transposable Elements: From Harmful Jumping Genes to Major Drivers of Genetic Innovation.
PMID:34831175
Evidence of G-Protein-Coupled Receptors (GPCR) in the Parasitic Protozoa Plasmodium falciparum-Sensing the Host Environment and Coupling within Its Molecular Signaling Toolkit.
PMID:34830263
Role of Non-Coding RNAs in Post-Transcriptional Regulation of Lung Diseases.
PMID:34819948
Emerging roles for endogenous retroviruses in immune epigenetic regulation.
PMID:34816452
Bringing precision oncology to cellular resolution with single-cell genomics.
PMID:34807338
Alu insertion variants alter gene transcript levels.
PMID:34799402
Inhibitor of growth protein 3 epigenetically silences endogenous retroviral elements and prevents innate immune activation.
PMID:34791430
Cumulative Roles for Epstein-Barr Virus, Human Endogenous Retroviruses, and Human Herpes Virus-6 in Driving an Inflammatory Cascade Underlying MS Pathogenesis.
PMID:34790199
Characterization of DNA methylation and promoter activity of long terminal repeat elements of feline endogenous retrovirus RDRS C2a.
PMID:34787790
Locus-specific expression of transposable elements in single cells with CELLO-seq.
PMID:34782740
Adaptive homeostasis and the p53 isoform network.
PMID:34779563
Targeting Phosphatases and Kinases: How to Checkmate Cancer.
PMID:34778245
Accurate long-read de novo assembly evaluation with Inspector.
PMID:34775997
Mutagenesis of human genomes by endogenous mobile elements on a population scale.
PMID:34772701
Histone Modification in NSCLC: Molecular Mechanisms and Therapeutic Targets.
PMID:34769131
Recent development of nucleic acid nanosensors to detect sequence-specific binding interactions: From metal ions, small molecules to proteins and pathogens.
PMID:34766041
AI applications in functional genomics.
PMID:34765093
Computational modeling of RNase, antisense ORF0 RNA, and intracellular compartmentation and their impact on the life cycle of the line retrotransposon.
PMID:34765087
Perfect and imperfect views of ultraconserved sequences.
PMID:34764456
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data.
PMID:34755848
Roles and mechanisms of exosomal non-coding RNAs in human health and diseases.
PMID:34753929
The transposable element-rich genome of the cereal pest Sitophilus oryzae.
PMID:34749730
Post-transcriptional regulation in spermatogenesis: all RNA pathways lead to healthy sperm.
PMID:34748024
The Genomic Organization of the LILR Region Remained Largely Conserved Throughout Primate Evolution: Implications for Health And Disease.
PMID:34737739
Non-Coding RNAs in the Etiology and Control of Major and Neglected Human Tropical Diseases.
PMID:34737736
'Omics' of suicidal behaviour: A path to personalised psychiatry.
PMID:34733641
BST2 Suppresses LINE-1 Retrotransposition by Reducing the Promoter Activity of LINE-1 5' UTR.
PMID:34730388
An integrative analysis of genomic and exposomic data for complex traits and phenotypic prediction.
PMID:34728654
An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity.
PMID:34727520
Chromatin accessibility and gene expression during adipocyte differentiation identify context-dependent effects at cardiometabolic GWAS loci.
PMID:34699533
Comparative Analysis of Plasmodium falciparum Genotyping via SNP Detection, Microsatellite Profiling, and Whole-Genome Sequencing.
PMID:34694871
Transposable Element Dynamics and Regulation during Zygotic Genome Activation in Mammalian Embryos and Embryonic Stem Cell Model Systems.
PMID:34691189
Genetic Regulation of Immunoglobulin G Glycosylation.
PMID:34687013
Integration of Epigenetic Mechanisms into Non-Genotoxic Carcinogenicity Hazard Assessment: Focus on DNA Methylation and Histone Modifications.
PMID:34681626
Implications of Antigen Selection on T Cell-Based Immunotherapy.
PMID:34681217
Factors Regulating the Activity of LINE1 Retrotransposons.
PMID:34680956
The Quest for Genes Involved in Adaptation to Climate Change in Ruminant Livestock.
PMID:34679854
Embryonic LTR retrotransposons supply promoter modules to somatic tissues.
PMID:34675070
Alu RNA and their roles in human disease states.
PMID:34672903
Pathogenic tau accelerates aging-associated activation of transposable elements in the mouse central nervous system.
PMID:34670118
Comprehensive molecular characterization of lung tumors implicates AKT and MYC signaling in adenocarcinoma to squamous cell transdifferentiation.
PMID:34656143
MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells.
PMID:34650118
Low-bias ncRNA libraries using ordered two-template relay: Serial template jumping by a modified retroelement reverse transcriptase.
PMID:34649994
Complex Transposon Insertion as a Novel Cause of Pompe Disease.
PMID:34639227
Phospho-Tau and Chromatin Landscapes in Early and Late Alzheimer's Disease.
PMID:34638632
Emerging Functions for snoRNAs and snoRNA-Derived Fragments.
PMID:34638533
RNA Therapeutics - Research and Clinical Advancements.
PMID:34631795
Genome-wide analysis of DNA methylation in 106 schizophrenia family trios in Han Chinese.
PMID:34628353
Telomere-specific chromatin capture using a pyrrole-imidazole polyamide probe for the identification of proteins and non-coding RNAs.
PMID:34627342
High-quality reference genome of Fasciola gigantica: Insights into the genomic signatures of transposon-mediated evolution and specific parasitic adaption in tropical regions.
PMID:34610021
Regulated splicing of large exons is linked to phase-separation of vertebrate transcription factors.
PMID:34605568
Easy and fast PCR-based protocol allows characterization of breakpoints resulting from Alu/Alu-mediated genomic rearrangements.
PMID:34596355
Evolutionary genetics and acclimatization in nephrology.
PMID:34584272
Androgen-Binding Protein (Abp) Evolutionary History: Has Positive Selection Caused Fixation of Different Paralogs in Different Taxa of the Genus Mus?
PMID:34581786
Does the Zinc Finger Antiviral Protein (ZAP) Shape the Evolution of Herpesvirus Genomes?
PMID:34578438
Identification of Abundant and Functional dodecaRNAs (doRNAs) Derived from Ribosomal RNA.
PMID:34575920
The Sound of Silence: How Silenced Chromatin Orchestrates the Repair of Double-Strand Breaks.
PMID:34573397
Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19.
PMID:34572502
Phosphorylation-Mediated Molecular Pathway Changes in Human Pituitary Neuroendocrine Tumors Identified by Quantitative Phosphoproteomics.
PMID:34571875
Bioinformatics and Machine Learning Approaches to Understand the Regulation of Mobile Genetic Elements.
PMID:34571773
A broad analysis of splicing regulation in yeast using a large library of synthetic introns.
PMID:34570750
Detection of Alu Exonization Events in Human Frontal Cortex From RNA-Seq Data.
PMID:34568430
Editorial: Pathogens, Pathobionts, and Autoimmunity.
PMID:34567014
The Interplay Among HIV, LINE-1, and the Interferon Signaling System.
PMID:34566998
Sex, rurality and socioeconomical status in Spanish centennial population (2017).
PMID:34565717
Proteomes Are of Proteoforms: Embracing the Complexity.
PMID:34564541
Transposon-triggered innate immune response confers cancer resistance to the blind mole rat.
PMID:34556881
Pharmaceutical drug development: high drug prices and the hidden role of public funding.
PMID:34554467
The function of twister ribozyme variants in non-LTR retrotransposition in Schistosoma mansoni.
PMID:34551436
Data Management and Modeling in Plant Biology.
PMID:34539712
Characterization of full-length LINE-1 insertions in 154 genomes.
PMID:34534648
International strategy in cancer epidemiology: Japan's involvement in global projects and future role.
PMID:34532599
DNA double-strand break repair in cancer: A path to achieving precision medicine.
PMID:34507781
Possible Roles of tRNA Fragments, as New Regulatory ncRNAs, in the Pathogenesis of Rheumatoid Arthritis.
PMID:34502386
Proximity labeling and other novel mass spectrometric approaches for spatiotemporal protein dynamics.
PMID:34496693
Endogenous Feline Leukemia Virus (FeLV) siRNA Transcription May Interfere with Exogenous FeLV Infection.
PMID:34495702
A functional genomics pipeline identifies pleiotropy and cross-tissue effects within obesity-associated GWAS loci.
PMID:34489471
Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and Accuracy.
PMID:34485311
Systematic Comparison of the Performances of De Novo Genome Assemblers for Oxford Nanopore Technology Reads From Piroplasm.
PMID:34485177
Shared properties and singularities of exoribonuclease-resistant RNAs in viruses.
PMID:34471487
Alpha Satellite Insertion Close to an Ancestral Centromeric Region.
PMID:34464971
The Propagation of Racial Disparities in Cardiovascular Genomics Research.
PMID:34461749
DNA methyltransferase inhibitors combination therapy for the treatment of solid tumor: mechanism and clinical application.
PMID:34452630
Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAs.
PMID:34445436
The Role of lncRNA in the Development of Tumors, including Breast Cancer.
PMID:34445129
Suggested Absence of Horizontal Transfer of Retrotransposons between Humans and Domestic Mammal Species.
PMID:34440397
Transposons-Based Clonal Diversity in Trematode Involves Parts of CR1 (LINE) in Eu- and Heterochromatin.
PMID:34440303
The Key Lnc (RNA)s in Cardiac and Skeletal Muscle Development, Regeneration, and Disease.
PMID:34436226
An Ancestral Retrovirus Envelope Protein Regulates Persistent Gammaherpesvirus Lifecycles.
PMID:34434177
Cohort Profile: The Alliance for Maternal and Newborn Health Improvement (AMANHI) biobanking study.
PMID:34426827
Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9.
PMID:34425899
Study of lncRNA TPA in Promoting Invasion and Metastasis of Breast Cancer Mediated by TGF-β Signaling Pathway.
PMID:34422811
Appropriate Clinical Genetic Testing of Hemochromatosis Type 2-4, Including Ferroportin Disease.
PMID:34413666
One-carbon metabolism and global DNA methylation in mothers of individuals with Down syndrome.
PMID:34410622
The Oldest Co-opted gag Gene of a Human Endogenous Retrovirus Shows Placenta-Specific Expression and Is Upregulated in Diffuse Large B-Cell Lymphomas.
PMID:34410386
A comprehensive analysis of gorilla-specific LINE-1 retrotransposons.
PMID:34406591
Segmental duplication as potential biomarkers for non-invasive prenatal testing of aneuploidies.
PMID:34391089
A strategy for building and using a human reference pangenome.
PMID:34386196
Expression of a human cDNA in moss results in spliced mRNAs and fragmentary protein isoforms.
PMID:34385580
DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regions.
PMID:34383754
Exploring tissue architecture using spatial transcriptomics.
PMID:34381231
Genome-wide mapping of binding sites of the transposase-derived SETMAR protein in the human genome.
PMID:34377368
Viral Suppression of RIPK1-Mediated Signaling.
PMID:34372694
JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.
PMID:34370400
Application of NGS Technology in Understanding the Pathology of Autoimmune Diseases.
PMID:34362117
Signaling Pathways Regulated by UBR Box-Containing E3 Ligases.
PMID:34361089
Genomic Mosaicism Formed by Somatic Variation in the Aging and Diseased Brain.
PMID:34356087
Transposable elements shape the evolution of mammalian development.
PMID:34354263
Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
PMID:34337360
Current diagnostic approaches to detect two important betacoronaviruses: Middle East respiratory syndrome coronavirus (MERS-CoV) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
PMID:34333398
Replication protein A: a multifunctional protein with roles in DNA replication, repair and beyond.
PMID:34316690
Haplotypic Associations and Differentiation of MHC Class II Polymorphic Alu Insertions at Five Loci With HLA-DRB1 Alleles in 12 Minority Ethnic Populations in China.
PMID:34305999
Role of long interspersed nuclear element-1 in the regulation of chromatin landscapes and genome dynamics.
PMID:34304633
Adenosine-to-inosine Alu RNA editing controls the stability of the pro-inflammatory long noncoding RNA NEAT1 in atherosclerotic cardiovascular disease.
PMID:34302813
Expanding studies of chromosome structure and function in the era of T2T genomics.
PMID:34302168
Activation of Endogenous Retrovirus, Brain Infections and Environmental Insults in Neurodegeneration and Alzheimer's Disease.
PMID:34298881
Discovery of genomic variation across a generation.
PMID:34296264
New Genes Born-In or Invading Vertebrate Genomes.
PMID:34295903
Highly accurate protein structure prediction for the human proteome.
PMID:34293799
Perturbed DNA methylation by Gadd45b induces chromatin disorganization, DNA strand breaks and dopaminergic neuron death.
PMID:34278264
A pooled CRISPR/AsCpf1 screen using paired gRNAs to induce genomic deletions in Chinese hamster ovary cells.
PMID:34277363
Folate Deficiency Triggers the Abnormal Segregation of a Region With Large Cluster of CG-Rich Trinucleotide Repeats on Human Chromosome 2.
PMID:34276797
Impact of Genetic Variation in Gene Regulatory Sequences: A Population Genomics Perspective.
PMID:34276769
Distinct Retrotransposon Evolution Profile in the Genome of Rabbit (Oryctolagus cuniculus).
PMID:34270728
The International Human Genome Project.
PMID:34264324
Metagenomics: a path to understanding the gut microbiome.
PMID:34259891
Levenshtein Distance, Sequence Comparison and Biological Database Search.
PMID:34257466
Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs.
PMID:34253730
A direct capture method for purification and detection of viral nucleic acid enables epidemiological surveillance of SARS-CoV-2.
PMID:34252764
Markov chain Monte Carlo Gibbs sampler approach for estimating haplotype frequencies among multiple malaria infected human blood samples.
PMID:34246273
Global mapping of cancers: The Cancer Genome Atlas and beyond.
PMID:34245122
Single-molecule, full-length transcript isoform sequencing reveals disease-associated RNA isoforms in cardiomyocytes.
PMID:34244519
Molecular mechanisms of pulmonary carcinogenesis by polycyclic aromatic hydrocarbons (PAHs): Implications for human lung cancer.
PMID:34242741
Multiscale modeling of genome organization with maximum entropy optimization.
PMID:34241389
Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements.
PMID:34235430
Differential efficacies of Cas nucleases on microsatellites involved in human disorders and associated off-target mutations.
PMID:34233005
Cognate restriction of transposition by piggyBac-like proteins.
PMID:34232995
The RNA editing enzyme ADAR2 restricts L1 mobility.
PMID:34224323
Nanopore Technology and Its Applications in Gene Sequencing.
PMID:34208844
The Structural, Functional and Evolutionary Impact of Transposable Elements in Eukaryotes.
PMID:34203645
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome.
PMID:34187812
Evolution of mouse circadian enhancers from transposable elements.
PMID:34187518
Expression of Retroelements in Mammalian Gametes and Embryos.
PMID:34182464
Lack of relationship between Alu repetitive elements in angiotensin converting enzyme and the severity of diabetic retinopathy.
PMID:34177375
Man is a "Rope" Stretched Between Virosphere and Humanoid Robots: On the Urgent Need of an Ethical Code for Ecosystem Survival.
PMID:34177285
A perspective on the molecular simulation of DNA from structural and functional aspects.
PMID:34168783
Debugging: putting the synthetic yeast chromosome to work.
PMID:34168782
Genetics of white color and iridophoroma in "Lemon Frost" leopard geckos.
PMID:34166378
Genome-wide binding analysis of 195 DNA binding proteins reveals "reservoir" promoters and human specific SVA-repeat family regulation.
PMID:34166368
Unraveling Genome Evolution Throughout Visual Analysis: The XCout Portal.
PMID:34163150
Haplotype diversity and sequence heterogeneity of human telomeres.
PMID:34162698
Viewing Victor McKusick's legacy through the lens of his bibliography.
PMID:34159717
History of the methodology of disease gene identification.
PMID:34159713
Endogenous reverse transcriptase and RNase H-mediated antiviral mechanism in embryonic stem cells.
PMID:34158624
Mobile element insertions and associated structural variants in longitudinal breast cancer samples.
PMID:34158539
Comprehensive identification of transposable element insertions using multiple sequencing technologies.
PMID:34158502
Sequence determinants, function, and evolution of CpG islands.
PMID:34156435
Hepatocellular adenoma in men: A nationwide assessment of pathology and correlation with clinical course.
PMID:34155783
SMARCB1 deletion in atypical teratoid rhabdoid tumors results in human endogenous retrovirus K (HML-2) expression.
PMID:34145313
Molecular mechanisms underlying nucleotide repeat expansion disorders.
PMID:34140671
Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA.
PMID:34140313
Convergent and distributed effects of the 3q29 deletion on the human neural transcriptome.
PMID:34131099
Paternal MTHFR deficiency leads to hypomethylation of young retrotransposons and reproductive decline across two successive generations.
PMID:34128976
Haplotype Shuffling and Dimorphic Transposable Elements in the Human Extended Major Histocompatibility Complex Class II Region.
PMID:34122517
UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction.
PMID:34122513
Cas9 targeted enrichment of mobile elements using nanopore sequencing.
PMID:34117247
Interphase Chromosomes in Replicative Senescence: Chromosome Positioning as a Senescence Biomarker and the Lack of Nuclear Motor-Driven Chromosome Repositioning in Senescent Cells.
PMID:34113611
Specialty Grand Challenge for Molecular Signalling and Pathways in Molecular Neuroscience.
PMID:34108865
RNA m6A modification orchestrates a LINE-1-host interaction that facilitates retrotransposition and contributes to long gene vulnerability.
PMID:34108665
The pseudogene PRELID1P6 promotes glioma progression via the hnHNPH1-Akt/mTOR axis.
PMID:34108621
The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis.
PMID:34108012
LINE-1 transcription in round spermatids is associated with accretion of 5-carboxylcytosine in their open reading frames.
PMID:34099857
Sequencing and comparative genome analysis of three Indians.
PMID:34086082
The Rhox gene cluster suppresses germline LINE1 transposition.
PMID:34083437
Losing DNA methylation at repetitive elements and breaking bad.
PMID:34082816
Genetics, its role in preventing the pandemic of coronary artery disease.
PMID:34080689
Infection by Diverse HIV-1 Subtypes Leads to Different Elevations in HERV-K Transcriptional Levels in Human T Cell Lines.
PMID:34079529
Human Endogenous Retrovirus as Therapeutic Targets in Neurologic Disease.
PMID:34073730
Alternate Roles of Sox Transcription Factors beyond Transcription Initiation.
PMID:34073089
Triazole-Modified Nucleic Acids for the Application in Bioorganic and Medicinal Chemistry.
PMID:34073038
THAP9 Transposase Cleaves DNA via Conserved Acidic Residues in an RNaseH-Like Domain.
PMID:34072453
Malaria in the 'Omics Era'.
PMID:34070769
Widespread Exaptation of L1 Transposons for Transcription Factor Binding in Breast Cancer.
PMID:34070697
Implementing Pharmacogenomics Testing: Single Center Experience at Arkansas Children's Hospital.
PMID:34064668
Proteomics, Personalized Medicine and Cancer.
PMID:34063807
Ancient Adversary - HERV-K (HML-2) in Cancer.
PMID:34055625
IgG and IgA autoantibodies against L1 ORF1p expressed in granulocytes correlate with granulocyte consumption and disease activity in pediatric systemic lupus erythematosus.
PMID:34051843
Emerging Classes of Small Non-Coding RNAs With Potential Implications in Diabetes and Associated Metabolic Disorders.
PMID:34040585
Genetic effects on liver chromatin accessibility identify disease regulatory variants.
PMID:34038741
Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments.
PMID:34029068
Overexpression of Endogenous Retroviruses and Malignancy Markers in Neuroblastoma Cell Lines by Medium-Induced Microenvironmental Changes.
PMID:34026614
Organ-, sex- and age-dependent patterns of endogenous L1 mRNA expression at a single locus resolution.
PMID:34023901
The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions.
PMID:34021759
Common DNA methylation dynamics in endometriod adenocarcinoma and glioblastoma suggest universal epigenomic alterations in tumorigenesis.
PMID:34021236
Chromatin-associated MRN complex protects highly transcribing genes from genomic instability.
PMID:34020942
Antibodies against human endogenous retrovirus K102 envelope activate neutrophils in systemic lupus erythematosus.
PMID:34019642
Structural analysis of the SRP Alu domain from Plasmodium falciparum reveals a non-canonical open conformation.
PMID:34017052
Placental outcomes of phthalate exposure.
PMID:34015474
Roles of long non‑coding RNA in osteoarthritis (Review).
PMID:34013375
MIR-NATs repress MAPT translation and aid proteostasis in neurodegeneration.
PMID:34012113
Unique evolutionary trajectories of breast cancers with distinct genomic and spatial heterogeneity.
PMID:34011996
Transcriptome Analyses Implicate Endogenous Retroviruses Involved in the Host Antiviral Immune System through the Interferon Pathway.
PMID:34009516
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation.
PMID:34006179
Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes.
PMID:34002224
Identification of Differentially Expressed Human Endogenous Retrovirus Families in Human Leukemia and Lymphoma Cell Lines and Stem Cells.
PMID:33996550
Enabling Genomics Pipelines in Commodity Personal Computers With Flash Storage.
PMID:33995473
DoChaP: the domain change presenter.
PMID:33988713
Dissecting polygenic signals from genome-wide association studies on human behaviour.
PMID:33986517
Evolution of default genetic control mechanisms.
PMID:33984070
High throughput quantification of short nucleic acid samples by capillary electrophoresis with automated data processing.
PMID:33979658
Overexpression of ZNF460 predicts worse survival and promotes metastasis through JAK2/STAT3 signaling pathway in patient with colon cancer.
PMID:33976729
The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality.
PMID:33973013
Endogenous retroviruses in the origins and treatment of cancer.
PMID:33971937
A Population-Specific Major Allele Reference Genome From The United Arab Emirates Population.
PMID:33968136
Toward Genome-Based Selection in Asian Seabass: What Can We Learn From Other Food Fishes and Farm Animals?
PMID:33968125
A Human Endogenous Bornavirus-Like Nucleoprotein Encodes a Mitochondrial Protein Associated with Cell Viability.
PMID:33952640
Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.
PMID:33946766
Adhesion GPR123 is an indicator for recurrence and prognosis in bladder cancer.
PMID:33945147
Targeting DDX3X Triggers Antitumor Immunity via a dsRNA-Mediated Tumor-Intrinsic Type I Interferon Response.
PMID:33941613
The genomic history of the Aegean palatial civilizations.
PMID:33930288
The Need for a Human Pangenome Reference Sequence.
PMID:33929893
The Startling Role of Mismatch Repair in Trinucleotide Repeat Expansions.
PMID:33925919
The "Genomic Code": DNA Pervasively Moulds Chromatin Structures Leaving no Room for "Junk".
PMID:33924668
Genetic Diversity and Population Structures in Chinese Miniature Pigs Revealed by SINE Retrotransposon Insertion Polymorphisms, a New Type of Genetic Markers.
PMID:33921134
In Vivo and In Vitro Assays Evaluating the Biological Activity of Taurine, Glucose and Energetic Beverages.
PMID:33920365
The Involvement of Long Non-Coding RNAs in Bone.
PMID:33920083
Sequence, Chromatin and Evolution of Satellite DNA.
PMID:33919233
Human Endogenous Retroviruses in Glioblastoma Multiforme.
PMID:33917421
Behind the Scenes of the Human Breast Cell Atlas Project.
PMID:33914224
Towards complete and error-free genome assemblies of all vertebrate species.
PMID:33911273
Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome.
PMID:33911077
Virus-derived variation in diverse human genomes.
PMID:33901175
MicroRNAs as theranostic markers in cardiac allograft transplantation: from murine models to clinical practice.
PMID:33897899
Sensing of transposable elements by the antiviral innate immune system.
PMID:33888553
Evolution of genetic networks for human creativity.
PMID:33879864
Advances in epigenetic therapeutics with focus on solid tumors.
PMID:33879235
FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.
PMID:33879057
Hepatitis C virus infection restricts human LINE-1 retrotransposition in hepatoma cells.
PMID:33872335
Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads.
PMID:33872311
Unearthing LTR Retrotransposon gag Genes Co-opted in the Deep Evolution of Eukaryotes.
PMID:33871607
Androgen Receptor-Related Non-coding RNAs in Prostate Cancer.
PMID:33869227
Role of DNA Methylation in Mediating Genetic Risk of Psychiatric Disorders.
PMID:33868039
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters.
PMID:33859876
HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy.
PMID:33858848
Mechanisms of enhancer action: the known and the unknown.
PMID:33858480
Immunotherapy-induced antibodies to endogenous retroviral envelope glycoprotein confer tumor protection in mice.
PMID:33857179
Integration of Transformative Platforms for the Discovery of Causative Genes in Cardiovascular Diseases.
PMID:33856594
Integrated transcription factor profiling with transcriptome analysis identifies L1PA2 transposons as global regulatory modulators in a breast cancer model.
PMID:33850167
Computational prediction of potential siRNA and human miRNA sequences to silence orf1ab associated genes for future therapeutics against SARS-CoV-2.
PMID:33846694
DNA methylation patterns expose variations in enhancer-chromatin modifications during embryonic stem cell differentiation.
PMID:33844685
Horizons in Veterinary Precision Oncology: Fundamentals of Cancer Genomics and Applications of Liquid Biopsy for the Detection, Characterization, and Management of Cancer in Dogs.
PMID:33834049
Silencing of LINE-1 retrotransposons is a selective dependency of myeloid leukemia.
PMID:33833453
A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome.
PMID:33833373
GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data.
PMID:33830196
The structure, function and evolution of a complete human chromosome 8.
PMID:33828295
A ride through the epigenetic landscape: aging reversal by reprogramming.
PMID:33825176
PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads.
PMID:33823910
Low Diversity of Human Variation Despite Mostly Mild Functional Impact of De Novo Variants.
PMID:33816556
DEEPGENTM-A Novel Variant Calling Assay for Low Frequency Variants.
PMID:33808158
Downfalls of Chemical Probes Acting at the Kinase ATP-Site: CK2 as a Case Study.
PMID:33807474
Construction of Whole Genomes from Scaffolds Using Single Cell Strand-Seq Data.
PMID:33807210
Non-Coding RNAs in Cancer Diagnosis and Therapy: Focus on Lung Cancer.
PMID:33803619
How Chaotic Is Genome Chaos?
PMID:33802828
Viroids and the Origin of Life.
PMID:33800543
Flowering and Seed Production across the Lemnaceae.
PMID:33800476
Palindromes in DNA-A Risk for Genome Stability and Implications in Cancer.
PMID:33799581
The Impact of Modern Technologies on Molecular Diagnostic Success Rates, with a Focus on Inherited Retinal Dystrophy and Hearing Loss.
PMID:33799353
The next horizon in precision oncology: Proteogenomics to inform cancer diagnosis and treatment.
PMID:33798439
Variable number tandem repeats - Their emerging role in sickness and health.
PMID:33794697
Pervasive cis effects of variation in copy number of large tandem repeats on local DNA methylation and gene expression.
PMID:33794196
Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome.
PMID:33792791
Alternative splicing of lncRNAs in human diseases.
PMID:33791145
Diversity of short interspersed nuclear elements (SINEs) in lepidopteran insects and evidence of horizontal SINE transfer between baculovirus and lepidopteran hosts.
PMID:33789582
X-ray Ptychography Imaging of Human Chromosomes After Low-dose Irradiation.
PMID:33786705
Genetic Risk Stratification: A Paradigm Shift in Prevention of Coronary Artery Disease.
PMID:33778213
Opportunities and challenges of artificial intelligence in the medical field: current application, emerging problems, and problem-solving strategies.
PMID:33771068
The evolution of patient-specific precision biomarkers to guide personalized heart-transplant care.
PMID:33768160
Mechanisms of Action of Hypomethylating Agents: Endogenous Retroelements at the Epicenter.
PMID:33768008
Efficacy and long-term safety of CRISPR/Cas9 genome editing in the SOD1-linked mouse models of ALS.
PMID:33767386
Consequences for Pancreatic β-Cell Identity and Function of Unregulated Transcript Processing.
PMID:33763030
Noncanonical immune response to the inhibition of DNA methylation by Staufen1 via stabilization of endogenous retrovirus RNAs.
PMID:33762305
G-quadruplexes originating from evolutionary conserved L1 elements interfere with neuronal gene expression in Alzheimer's disease.
PMID:33758195
Dissecting the transcriptome in cardiovascular disease.
PMID:33757121
The functional impact of nuclear reorganization in cellular senescence.
PMID:33755107
Evolutionary conservation of RNA sequence and structure.
PMID:33754485
Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics.
PMID:33750298
Advancing drug discovery using the power of the human genome.
PMID:33748968
Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
PMID:33742045
Exosomal Long Non-coding RNAs: Emerging Players in the Tumor Microenvironment.
PMID:33738133
Genomic regions associated with microdeletion/microduplication syndromes exhibit extreme diversity of structural variation.
PMID:33724415
Pinpointing the PRDM9-PRDM7 Gene Duplication Event During Primate Divergence.
PMID:33719332
Reconsidering LINE-1's role in cancer: does LINE-1 function as a reporter detecting early cancer-associated epigenetic signatures?
PMID:33717489
Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high-throughput RNA sequencing and DNA sequence.
PMID:33712618
Assessing the contribution of tumor mutational phenotypes to cancer progression risk.
PMID:33711014
From the discovery of DNA to current tools for DNA editing.
PMID:33710258
Retroviral Elements in Human Evolution and Neural Development.
PMID:33693440
Interrogating lncRNA functions via CRISPR/Cas systems.
PMID:33685382
Localization of RNAs in the nucleus: cis- and trans- regulation.
PMID:33682620
Altered DNA repair creates novel Alu/Alu repeat-mediated deletions.
PMID:33675284
Identification of Germline Genetic Variants that Increase Prostate Cancer Risk and Influence Development of Aggressive Disease.
PMID:33673083
Meta-Analysis of Gene Popularity: Less Than Half of Gene Citations Stem from Gene Regulatory Networks.
PMID:33672419
Transposable Elements and Stress in Vertebrates: An Overview.
PMID:33671215
Implications of Endogenous Retroelements in the Etiopathogenesis of Systemic Lupus Erythematosus.
PMID:33669709
Genetic Mechanisms Underlying Cortical Evolution in Mammals.
PMID:33659245
Structural variant detection in cancer genomes: computational challenges and perspectives for precision oncology.
PMID:33654267
An update of KAIKObase, the silkworm genome database.
PMID:33645624
From Genome-Wide to Environment-Wide: Capturing the Environome.
PMID:33645332
A Mechanism Leading to Changes in Copy Number Variations Affected by Transcriptional Level Might Be Involved in Evolution, Embryonic Development, Senescence, and Oncogenesis Mediated by Retrotransposons.
PMID:33644055
Gene Size Matters: An Analysis of Gene Length in the Human Genome.
PMID:33643374
VISTA: A Target to Manage the Innate Cytokine Storm.
PMID:33643285
Methylation status and long-fragment cell-free DNA are prognostic biomarkers for gastric cancer.
PMID:33641249
Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
PMID:33632895
Epigenetics of cutaneous T-cell lymphoma: biomarkers and therapeutic potentials.
PMID:33628583
Closing in on a complete human genome.
PMID:33619406
Elucidation of Epigenetic Landscape in Coronary Artery Disease: A Review on Basic Concept to Personalized Medicine.
PMID:33598635
The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects.
PMID:33591322
SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans.
PMID:33587037
SARS-CoV-2 Proteins Exploit Host's Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways.
PMID:33585554
Mammalian Germ Cell Development: From Mechanism to In Vitro Reconstitution.
PMID:33577794
Fatal perinatal mitochondrial cardiac failure caused by recurrent de novo duplications in the ATAD3 locus.
PMID:33575671
A random forest-based framework for genotyping and accuracy assessment of copy number variations.
PMID:33575619
Benchmark study comparing liftover tools for genome conversion of epigenome sequencing data.
PMID:33575605
Five Circular RNAs in Metabolism Pathways Related to Prostate Cancer.
PMID:33574834
Sense-oriented AluYRa1 elements provide a lineage-specific transcription environment for polyadenylation.
PMID:33574427
Early life stress during the neonatal period alters social play and Line1 during the juvenile stage of development.
PMID:33574362
LAMA: automated image analysis for the developmental phenotyping of mouse embryos.
PMID:33574040
Systemic Lupus Erythematosus in Children and Young People.
PMID:33569643
The broken promise that undermines human genome research.
PMID:33568833
How the human genome transformed study of rare diseases.
PMID:33568830
A wealth of discovery built on the Human Genome Project - by the numbers.
PMID:33568828
From one human genome to a complex tapestry of ancestry.
PMID:33568827
Breaking through the unknowns of the human reference genome.
PMID:33568817
The Cancer Genome: Paradigm or Paradox?
PMID:33567511
A mesoscopic simulator to uncover heterogeneity and evolutionary dynamics in tumors.
PMID:33566821
L1 retrotransposons exploit RNA m6A modification as an evolutionary driving force.
PMID:33563981
Evolution of genome structure in the Drosophila simulans species complex.
PMID:33563718
RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs.
PMID:33563338
Role of Transposable Elements in Gene Regulation in the Human Genome.
PMID:33557056
Human endogenous retroviruses in cancer: Expression, regulation and function.
PMID:33552242
Sea Urchin as a Universal Model for Studies of Gene Networks.
PMID:33552139
Genomic Variation, Evolvability, and the Paradox of Mental Illness.
PMID:33551865
Invasive and Noninvasive Nonfunctioning Gonadotroph Pituitary Tumors Differ in DNA Methylation Level of LINE-1 Repetitive Elements.
PMID:33546126
Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution.
PMID:33545556
Evolutionary dynamics of transposable elements in bdelloid rotifers.
PMID:33543711
Complicated legacies: The human genome at 20.
PMID:33542123
Creating artificial human genomes using generative neural networks.
PMID:33539374
Benchmarking of next and third generation sequencing technologies and their associated algorithms for de novo genome assembly.
PMID:33537807
Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey.
PMID:33537181
BRCA1 and RNAi factors promote repair mediated by small RNAs and PALB2-RAD52.
PMID:33536619
Circular RNA circPIKfyve acts as a sponge of miR-21-3p to enhance antiviral immunity through regulating MAVS in teleost fish.
PMID:33536171
Impact of short-read sequencing on the misassembly of a plant genome.
PMID:33530937
Targeted next-generation sequencing-based detection of microsatellite instability in colorectal carcinomas.
PMID:33524032
Homotypic clustering of L1 and B1/Alu repeats compartmentalizes the 3D genome.
PMID:33514913
Noncanonical open reading frames encode functional proteins essential for cancer cell survival.
PMID:33510483
tsRNAs: Novel small molecules from cell function and regulatory mechanism to therapeutic targets.
PMID:33507586
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA.
PMID:33506766
Complete sequences of Schizosaccharomyces pombe subtelomeres reveal multiple patterns of genome variation.
PMID:33504776
The impact of purifying and background selection on the inference of population history: problems and prospects.
PMID:33501439
The search for RNA-binding proteins: a technical and interdisciplinary challenge.
PMID:33492363
Genomic Study of COVID-19 Corona Virus Excludes Its Origin from Recombination or Characterized Biological Sources and Suggests a Role for HERVS in Its Wide Range Symptoms.
PMID:33487779
Intercellular Communication in the Nervous System Goes Viral.
PMID:33485691
Machine learning as the new approach in understanding biomarkers of suicidal behavior.
PMID:33485296
Estimating the accuracy of pharmacophore-based detection of cognate receptor-ligand pairs in the immunoglobulin superfamily.
PMID:33483991
A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution.
PMID:33482734
Control of LINE-1 Expression Maintains Genome Integrity in Germline and Early Embryo Development.
PMID:33481218
Epigenetic and non-coding regulation of alcohol abuse and addiction.
PMID:33461665
The Texas Society of Pathologists: molded by the legacy of pathology and focused on excellence in medicine for 100 years and beyond.
PMID:33456200
50th anniversary of the discovery of reverse transcriptase.
PMID:33448895
Recognize Yourself-Innate Sensing of Non-LTR Retrotransposons.
PMID:33445593
A Highly Conserved Circular RNA circRasGEF1B Enhances Antiviral Immunity by Regulating miR-21-3p/MITA Pathway in Lower Vertebrates.
PMID:33441345
Genome diversity in Ukraine.
PMID:33438729
The Dfam community resource of transposable element families, sequence models, and genome annotations.
PMID:33436076
Multiple Alu Exonization in 3'UTR of a Primate-Specific Isoform of CYP20A1 Creates a Potential miRNA Sponge.
PMID:33434274
Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference.
PMID:33431880
Half a century of the reverse transcriptase-happy birthday!
PMID:33430901
Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2.
PMID:33413422
Transposable element-derived sequences in vertebrate development.
PMID:33407840
Signature changes in the expressions of protein-coding genes, lncRNAs, and repeat elements in early and late cellular senescence.
PMID:33402863
TFs for TEs: the transcription factor repertoire of mammalian transposable elements.
PMID:33397727
Expression profiles, biological functions and clinical significance of circRNAs in bladder cancer.
PMID:33397425
Probably Correct: Rescuing Repeats with Short and Long Reads.
PMID:33396198
Alu retrotransposons and COVID-19 susceptibility and morbidity.
PMID:33390179
Seeing the forest for the trees: Retrieving plant secondary biochemical pathways from metabolome networks.
PMID:33384856
Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data.
PMID:33355230
Integrative Analysis of Gene-Specific DNA Methylation and Untargeted Metabolomics Data from the ELEMENT Cohort.
PMID:33354655
Gene regulation by long non-coding RNAs and its biological functions.
PMID:33353982
Adaptive evolution of an essential telomere protein restricts telomeric retrotransposons.
PMID:33350936
Factors that mold the nuclear landscape of HIV-1 integration.
PMID:33337475
Effects of activation of the LINE-1 antisense promoter on the growth of cultured cells.
PMID:33335226
Use of Genomic Information in Health Impact Assessment is Yet to Come: A Systematic Review.
PMID:33334033
Involvement of DNA Repair Genes and System of Radiation-Induced Activation of Transposons in Formation of Transgenerational Effects.
PMID:33329741
Antifreeze protein dispersion in eelpouts and related fishes reveals migration and climate alteration within the last 20 Ma.
PMID:33320906
GAS5 regulates diabetic cardiomyopathy via miR‑221‑3p/p27 axis‑associated autophagy.
PMID:33313941
Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription.
PMID:33303640
Identification of Long Noncoding RNA Biomarkers for Hepatocellular Carcinoma Using Single-Sample Networks.
PMID:33299877
Genotyping of Francisella tularensis subsp. holarctica from Hares in Germany.
PMID:33291395
NGS-based identification and tracing of microsatellite instability from minute amounts DNA using inter-Alu-PCR.
PMID:33290560
Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data.
PMID:33283855
How Retroviruses and Retrotransposons in Our Genome May Contribute to Autoimmunity in Rheumatological Conditions.
PMID:33281822
Epigenetic Alterations in the Gastrointestinal Tract: Current and Emerging Use for Biomarkers of Cancer.
PMID:33279516
Striking heterogeneity of somatic L1 retrotransposition in single normal and cancerous gastrointestinal cells.
PMID:33277430
Building genomes to understand biology.
PMID:33268788
A novel computational model for predicting potential LncRNA-disease associations based on both direct and indirect features of LncRNA-disease pairs.
PMID:33267800
Deep Learning in LncRNAome: Contribution, Challenges, and Perspectives.
PMID:33266128
The Role of APOBECs in Viral Replication.
PMID:33266042
Developmental differences in genome replication program and origin activation.
PMID:33264404
FTH1 Pseudogenes in Cancer and Cell Metabolism.
PMID:33260500
'There and Back Again'-Forward Genetics and Reverse Phenotyping in Pulmonary Arterial Hypertension.
PMID:33256119
Evaluating the Genomic Parameters Governing rAAV-Mediated Homologous Recombination.
PMID:33248247
Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes.
PMID:33244064
CircRNAs open a new era in the study of cardiovascular disease (Review).
PMID:33236162
Challenges of Precision Medicine for Atherosclerotic Cardiovascular Disease Based on Human Genome Information.
PMID:33229815
Identification of the novel Np17 oncogene in human leukemia.
PMID:33226963
Perversely expressed long noncoding RNAs can alter host response and viral proliferation in SARS-CoV-2 infection.
PMID:33224264
Identification of high-copy number long terminal repeat retrotransposons and their expansion in Phalaenopsis orchids.
PMID:33213366
Structure of the Receptor Binding Domain of EnvP(b)1, an Endogenous Retroviral Envelope Protein Expressed in Human Tissues.
PMID:33203760
LC-N2G: a local consistency approach for nutrigenomics data analysis.
PMID:33203358
Human Endogenous Retrovirus K Rec forms a Regulatory Loop with MITF that Opposes the Progression of Melanoma to an Invasive Stage.
PMID:33202765
Hotspots of Human Mutation.
PMID:33199048
Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression.
PMID:33197463
Exploring the changing geographical pattern of international scientific collaborations through the prism of cities.
PMID:33196668
Endoplasmic Reticulum Associated Protein Degradation (ERAD) in the Pathology of Diseases Related to TGFβ Signaling Pathway: Future Therapeutic Perspectives.
PMID:33195419
Establishment of Quantitative PCR Assays for Active Long Interspersed Nuclear Element-1 Subfamilies in Mice and Applications to the Analysis of Aging-Associated Retrotransposition.
PMID:33193604
GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline.
PMID:33193602
The Role of DNA Methylation in Ischemic Stroke: A Systematic Review.
PMID:33193003
E3 Ubiquitin Ligases in Neurological Diseases: Focus on Gigaxonin and Autophagy.
PMID:33192535
High levels of LINE-1 transposable elements expressed in Kaposi's sarcoma-associated herpesvirus-related primary effusion lymphoma.
PMID:33188297
Frequency and methylation status of selected retrotransposition competent L1 loci in amyotrophic lateral sclerosis.
PMID:33187550
A SINE-VNTR-Alu in the LRIG2 Promoter Is Associated with Gene Expression at the Locus.
PMID:33187279
The tumor suppressor microRNA let-7 inhibits human LINE-1 retrotransposition.
PMID:33177501
Lung transcriptome of a COVID-19 patient and systems biology predictions suggest impaired surfactant production which may be druggable by surfactant therapy.
PMID:33173052
LINE-1 retrotransposon methylation in chorionic villi of first trimester miscarriages with aneuploidy.
PMID:33170392
Modes of genetic adaptations underlying functional innovations in the rumen.
PMID:33165812
Using Drosophila melanogaster To Discover Human Disease Genes: An Educational Primer for Use with "Amyotrophic Lateral Sclerosis Modifiers in Drosophila Reveal the Phospholipase D Pathway as a Potential Therapeutic Target".
PMID:33158986
Clinical Interpretation and Management of Genetic Variants.
PMID:33145465
Ensembl 2021.
PMID:33137190
Effects of zinc finger protein 403 on the proliferation, migration and invasion abilities of prostate cancer cells.
PMID:33125130
Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus.
PMID:33122305
Strategic vision for improving human health at The Forefront of Genomics.
PMID:33116284
Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists.
PMID:33106560
Comprehensive Transcriptome Profiling of Dairy Goat Mammary Gland Identifies Genes and Networks Crucial for Lactation and Fatty Acid Metabolism.
PMID:33101357
Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans.
PMID:33098466
Beyond the RNA-dependent function of LncRNA genes.
PMID:33095159
Genome streamlining in a minute herbivore that manipulates its host plant.
PMID:33095158
Twenty Years Later: A Comprehensive Review of the X Chromosome Use in Forensic Genetics.
PMID:33093840
A Journey through Genetic Architecture and Predisposition of Coronary Artery Disease.
PMID:33093801
Genetic Aspects in Shoulder Disorders.
PMID:33093716
Endogenous retroviruses drive KRAB zinc-finger protein family expression for tumor suppression.
PMID:33087347
Intrinsic DNA topology as a prioritization metric in genomic fine-mapping studies.
PMID:33084892
Evolutionary History of Alpha Satellite DNA Repeats Dispersed within Human Genome Euchromatin.
PMID:33078196
Next Generation Sequencing Based Forward Genetic Approaches for Identification and Mapping of Causal Mutations in Crop Plants: A Comprehensive Review.
PMID:33066352
An Intronic Alu Element Attenuates the Transcription of a Long Non-coding RNA in Human Cell Lines.
PMID:33061937
p53 directly represses human LINE1 transposons.
PMID:33060137
Whole genome sequencing data of multiple individuals of Pakistani descent.
PMID:33051442
RNA editing in mesothelioma: a look forward.
PMID:33050791
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome.
PMID:33021634
Posttranscriptional regulation of human endogenous retroviruses by RNA-binding motif protein 4, RBM4.
PMID:33020268
New Aspects of the Epigenetics of Pancreatic Carcinogenesis.
PMID:33014438
Variants of significance: medical genetics and surgical outcomes in congenital heart disease.
PMID:33009125
Immunological Features with DNA Microsatellite Alterations in Patients with Colorectal Cancer.
PMID:33000102
Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D.
PMID:32999275
RNA-cDNA hybrids mediate transposition via different mechanisms.
PMID:32994470
Reconstruction of lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveals functional lncRNAs in skin cutaneous melanoma.
PMID:32993558
Host Gene Regulation by Transposable Elements: The New, the Old and the Ugly.
PMID:32993145
tRNA-Derived Small RNAs: Novel Epigenetic Regulators.
PMID:32992597
Tissue-specific usage of transposable element-derived promoters in mouse development.
PMID:32988383
The Role of Micro-RNAs and Circulating Tumor Markers as Predictors of Response to Neoadjuvant Therapy in Locally Advanced Rectal Cancer.
PMID:32987896
A Model-Driven Quantitative Analysis of Retrotransposon Distributions in the Human Genome.
PMID:32986810
Transposon expression in the Drosophila brain is driven by neighboring genes and diversifies the neural transcriptome.
PMID:32973040
Non-Coding RNAs, a Novel Paradigm for the Management of Gastrointestinal Stromal Tumors.
PMID:32972022
Connecting the Missing Dots: ncRNAs as Critical Regulators of Therapeutic Susceptibility in Breast Cancer.
PMID:32967267
Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD.
PMID:32966296
Transposon clusters as substrates for aberrant splice-site activation.
PMID:32965162
Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains.
PMID:32963593
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing.
PMID:32962098
Predicting Response to Immunotherapy in Metastatic Renal Cell Carcinoma.
PMID:32961934
A multi-omics approach to solving problems in plant disease ecology.
PMID:32960892
Analysis, identification and visualization of subgroups in genomics.
PMID:32954413
Intronic regions of the human coagulation factor VIII gene harboring transcription factor binding sites with a strong bias towards the short-interspersed elements.
PMID:32944665
Nucleotide sequencing of the HoxA gene cluster using Gorilla fosmid clones.
PMID:32934753
ZBED1/DREF: A transcription factor that regulates cell proliferation.
PMID:32934705
Immune activation by a multigene family of lectins with variable tandem repeats in oriental river prawn (Macrobrachium nipponense).
PMID:32931720
Mouse tumor susceptibility genes identify drug combinations for multiple myeloma.
PMID:32923678
Block and Lock HIV Cure Strategies to Control the Latent Reservoir.
PMID:32923412
TIP_finder: An HPC Software to Detect Transposable Element Insertion Polymorphisms in Large Genomic Datasets.
PMID:32917036
Mosaicism in Human Health and Disease.
PMID:32916079
At the dawn of the transcriptomic medicine.
PMID:32915637
Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny.
PMID:32912931
Differences between human and chimpanzee genomes and their implications in gene expression, protein functions and biochemical properties of the two species.
PMID:32912141
Proteomic Analysis of Human Endometrial Tissues Reveals the Roles of PI3K/AKT/mTOR Pathway and Tumor Angiogenesis Molecules in the Pathogenesis of Endometrial Cancer.
PMID:32908897
Evaluation of Plasma Circulating Cell Free DNA Concentration and Integrity in Patients with Prostate Cancer in Jamaica: A Preliminary Study.
PMID:32906694
Next-Generation Sequencing at High Sequencing Depth as a Tool to Study the Evolution of Metastasis Driven by Genetic Change Events of Lung Squamous Cell Carcinoma.
PMID:32903616
Use of an Exposome Approach to Understand the Effects of Exposures From the Natural, Built, and Social Environments on Cardio-Vascular Disease Onset, Progression, and Outcomes.
PMID:32903514
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice.
PMID:32899740
Endogenous retroviruses drive species-specific germline transcriptomes in mammals.
PMID:32895553
Aberrant Methylation of LINE-1 Transposable Elements: A Search for Cancer Biomarkers.
PMID:32887319
Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end of the second plague pandemic.
PMID:32884081
Replication stress at microsatellites causes DNA double-strand breaks and break-induced replication.
PMID:32873711
Reverse Transcriptase Affects Gametogenesis and Preimplantation Development in Mouse.
PMID:32871749
Characterization and Localization of Calb2 in Both the Testis and Ovary of the Japanese Flounder (Paralichthys olivaceus).
PMID:32858799
Lamivudine Inhibits Alu RNA-induced Retinal Pigment Epithelium Degeneration via Anti-inflammatory and Anti-senescence Activities.
PMID:32855848
Molecular Characterization of Testicular Germ Cell Tumors Using Tissue Microdissection.
PMID:32852755
New Understanding of the Relevant Role of LINE-1 Retrotransposition in Human Disease and Immune Modulation.
PMID:32850797
Forensic Autosomal Short Tandem Repeats and Their Potential Association With Phenotype.
PMID:32849844
Background Selection Does Not Mimic the Patterns of Genetic Diversity Produced by Selective Sweeps.
PMID:32847814
Potential of transposon-mediated cellular reprogramming towards cell-based therapies.
PMID:32843912
Pan-genomic open reading frames: A potential supplement of single nucleotide polymorphisms in estimation of heritability and genomic prediction.
PMID:32833967
A report on DNA sequence determinants in gene expression.
PMID:32831525
Application of Next Generation Sequencing in Laboratory Medicine.
PMID:32829577
Silencing and Transcriptional Regulation of Endogenous Retroviruses: An Overview.
PMID:32823517
Untangling Data in Precision Oncology - A Model for Chronic Diseases?
PMID:32823314
Identifying and Targeting Human Tumor Antigens for T Cell-Based Immunotherapy of Solid Tumors.
PMID:32822573
Presence of Endogenous Viral Elements Negatively Correlates with Feline Leukemia Virus Susceptibility in Puma and Domestic Cat Cells.
PMID:32817213
Cryptic genetic variation enhances primate L1 retrotransposon survival by enlarging the functional coiled coil sequence space of ORF1p.
PMID:32797042
The Prospective Study of Epigenetic Regulatory Profiles in Sport and Exercise Monitored Through Chromosome Conformation Signatures.
PMID:32784689
Trypanosoma cruzi Genome 15 Years Later: What Has Been Accomplished?
PMID:32781761
The Long Non-coding Road to Atherosclerosis.
PMID:32772181
The Human Genome Project changed everything.
PMID:32770171
Polygenic risk score as clinical utility in psychiatry: a clinical viewpoint.
PMID:32770057
A First NGS Investigation Suggests No Association Between Viruses and Canine Cancers.
PMID:32766289
Analysis of Salmonella typhimurium Protein-Targeting in the Nucleus of Host Cells and the Implications in Colon Cancer: An in-silico Approach.
PMID:32765017
Comparative genomic analysis of eutherian fibroblast growth factor genes.
PMID:32758140
Whole Genome Sequencing of Four Representatives From the Admixed Population of the United Arab Emirates.
PMID:32754195
Proteomics and Metabolomics for Cystic Fibrosis Research.
PMID:32751630
Single-cell proteomic analysis.
PMID:32748522
Genomic Diagnosis for Pediatric Disorders: Revolution and Evolution.
PMID:32733828
Tumor DNA hypomethylation of LINE-1 is associated with low tumor grade of breast cancer in Tunisian patients.
PMID:32724446
Human L1 Transposition Dynamics Unraveled with Functional Data Analysis.
PMID:32722770
How Dietary Factors Affect DNA Methylation: Lesson from Epidemiological Studies.
PMID:32722411
Endogenous Retroviruses Walk a Fine Line between Priming and Silencing.
PMID:32718022
How Will Genetics Inform the Clinical Care of Atrial Fibrillation?
PMID:32716712
BIOMAP: A Home for All Biology Methods.
PMID:32715089
Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci.
PMID:32709900
Consequence of Paradigm Shift with Repeat Landscapes in Reptiles: Powerful Facilitators of Chromosomal Rearrangements for Diversity and Evolution.
PMID:32708239
Brain cell somatic gene recombination and its phylogenetic foundations.
PMID:32699111
Prostate cancer biology & genomics.
PMID:32676435
Regulation of stem cell function and neuronal differentiation by HERV-K via mTOR pathway.
PMID:32669437
Human Cancers Express TRAILshort, a Dominant Negative TRAIL Splice Variant, Which Impairs Immune Effector Cell Killing of Tumor Cells.
PMID:32669373
A deliberative study of public attitudes towards sharing genomic data within NHS genomic medicine services in England.
PMID:32664786
Telomere-to-telomere assembly of a complete human X chromosome.
PMID:32663838
Identification and Genotyping of Transposable Element Insertions From Genome Sequencing Data.
PMID:32662945
Regulation of Error-Prone DNA Double-Strand Break Repair and Its Impact on Genome Evolution.
PMID:32660124
Cancer systems immunology.
PMID:32657757
Maximal Segmental Score Method for Localizing Recessive Disease Variants Based on Sequence Data.
PMID:32655614
Enhancer Function of MicroRNA-3681 Derived from Long Terminal Repeats Represses the Activity of Variable Number Tandem Repeats in the 3' UTR of SHISA7.
PMID:32655015
Cancer Associated Endogenous Retroviruses: Ideal Immune Targets for Adenovirus-Based Immunotherapy.
PMID:32650622
Non-Coding RNA Editing in Cancer Pathogenesis.
PMID:32650588
Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding.
PMID:32649757
Higher Germline Mutagenesis of Genes with Stronger Testis Expressions Refutes the Transcriptional Scanning Hypothesis.
PMID:32638015
Strategies for whole-exome sequencing analysis in a case series study of familial male infertility.
PMID:32637866
Handling multi-mapped reads in RNA-seq.
PMID:32637053
Transposable elements in Drosophila.
PMID:32636946
mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.
PMID:32632025
Fully Phased Sequence of a Diploid Human Genome Determined de Novo from the DNA of a Single Individual.
PMID:32631951
Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns.
PMID:32631327
Pro-Inflammatory Signaling Upregulates a Neurotoxic Conotoxin-Like Protein Encrypted Within Human Endogenous Retrovirus-K.
PMID:32629888
Nasopharyngeal Haemophilus and local immune response during infant respiratory syncytial virus infection.
PMID:32628963
Breathing fresh air into respiratory research with single-cell RNA sequencing.
PMID:32620586
Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
PMID:32616928
Desiccation does not drastically increase the accessibility of exogenous DNA to nuclear genomes: evidence from the frequency of endosymbiotic DNA transfer.
PMID:32611311
LDtrait: An Online Tool for Identifying Published Phenotype Associations in Linkage Disequilibrium.
PMID:32606005
Long noncoding RNA H19X is a key mediator of TGF-β-driven fibrosis.
PMID:32603313
Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates.
PMID:32602886
Retrotransposons in pluripotent stem cells.
PMID:32588192
The IRI-DICE hypothesis: ionizing radiation-induced DSBs may have a functional role for non-deterministic responses at low doses.
PMID:32583290
Infectious Triggers in Periodontitis and the Gut in Rheumatoid Arthritis (RA): A Complex Story About Association and Causality.
PMID:32582191
Efavirenz as a potential drug for the treatment of triple-negative breast cancers.
PMID:32566961
The Battle to Sequence the Bread Wheat Genome: A Tale of the Three Kingdoms.
PMID:32561470
Plasma cell-free DNA predicts pediatric cerebral malaria severity.
PMID:32554925
Characteristics of circular RNAs generated by human Survival Motor Neuron genes.
PMID:32553550
A comparative study of long interspersed element-1 protein immunoreactivity in cutaneous malignancies.
PMID:32552892
High-Throughput Sequencing is a Crucial Tool to Investigate the Contribution of Human Endogenous Retroviruses (HERVs) to Human Biology and Development.
PMID:32545287
Closing Human Reference Genome Gaps: Identifying and Characterizing Gap-Closing Sequences.
PMID:32532800
Multi-branch Convolutional Neural Network for Identification of Small Non-coding RNA genomic loci.
PMID:32528107
Nanopore sequencing as a scalable, cost-effective platform for analyzing polyclonal vector integration sites following clinical T cell therapy.
PMID:32527930
DNA methylation patterns of LINE-1 and Alu for pre-symptomatic dementia in type 2 diabetes.
PMID:32525932
Single-Cell Transcriptomics Analysis Identifies Nuclear Protein 1 as a Regulator of Docetaxel Resistance in Prostate Cancer Cells.
PMID:32513898
Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes.
PMID:32513296
Long-read human genome sequencing and its applications.
PMID:32504078
A single mutation in the ACTR8 gene associated with lineage-specific expression in primates.
PMID:32503430
DNA hypomethylation promotes transposable element expression and activation of immune signaling in renal cell cancer.
PMID:32493845
Education in the genomics era: Generating high-quality genome assemblies in university courses.
PMID:32491162
Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs.
PMID:32489435
Assembly and annotation of an Ashkenazi human reference genome.
PMID:32487205
SETDB1-Mediated Silencing of Retroelements.
PMID:32486217
Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates.
PMID:32479260
The functional cooperation of 5-HT1A and mGlu4R in HEK-293 cell line.
PMID:32472388
The quest to slow ageing through drug discovery.
PMID:32467649
Mosaic Somatic Gene Recombination as a Potentially Unifying Hypothesis for Alzheimer's Disease.
PMID:32457796
Vertical lossless genomic data compression tools for assembled genomes: A systematic literature review.
PMID:32453750
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.
PMID:32442304
Non-coding RNAs in Nervous System Development and Disease.
PMID:32435641
Viral infection impacts transposable element transcript amounts in Drosophila.
PMID:32434916
Reawakening the Developmental Origins of Cancer Through Transposable Elements.
PMID:32432029
Mechanisms of Long Non-Coding RNAs in Cancers and Their Dynamic Regulations.
PMID:32429086
Review: Understanding Rare Genetic Diseases in Low Resource Regions Like Jammu and Kashmir - India.
PMID:32425985
Progress, Challenges, and Surprises in Annotating the Human Genome.
PMID:32421357
Genomic Indexing by Somatic Gene Recombination of mRNA/ncRNA - Does It Play a Role in Genomic Mosaicism, Memory Formation, and Alzheimer's Disease?
PMID:32411177
High Glucose Induces Lipid Accumulation via 25-Hydroxycholesterol DNA-CpG Methylation.
PMID:32408171
Conserved Herpesvirus Kinase ORF36 Activates B2 Retrotransposons during Murine Gammaherpesvirus Infection.
PMID:32404524
Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.
PMID:32404186
Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
PMID:32385271
Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction.
PMID:32383760
A single-cell transcriptomic landscape of primate arterial aging.
PMID:32371953
Oxidative Stress in DNA Repeat Expansion Disorders: A Focus on NRF2 Signaling Involvement.
PMID:32369911
HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C.
PMID:32369554
The Sophisticated Transcriptional Response Governed by Transposable Elements in Human Health and Disease.
PMID:32366056
Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation.
PMID:32360393
The Simons Genome Diversity Project: A Global Analysis of Mobile Element Diversity.
PMID:32359137
Are Pathogenic Germline Variants in Metastatic Melanoma Associated with Resistance to Combined Immunotherapy?
PMID:32354124
DNA methylation level in blood and relations to breast cancer, risk factors and environmental exposure in Greenlandic Inuit women.
PMID:32352194
Comparison of Behavior and Genetic Structure in Populations of Family and Kenneled Beagles.
PMID:32351979
Recent Trends of microRNA Significance in Pediatric Population Glioblastoma and Current Knowledge of Micro RNA Function in Glioblastoma Multiforme.
PMID:32349263
Widespread and tissue-specific expression of endogenous retroelements in human somatic tissues.
PMID:32345368
The functional study of human proteins using humanized yeast.
PMID:32342338
Aging-regulated anti-apoptotic long non-coding RNA Sarrah augments recovery from acute myocardial infarction.
PMID:32341350
The science commons in life science research: structure, function, and value of access to genetic diversity.
PMID:32336774
A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi.
PMID:32326892
Insertion of Telomeric Repeats in the Human and Horse Genomes: An Evolutionary Perspective.
PMID:32325780
Polygenic Scores to Assess Atherosclerotic Cardiovascular Disease Risk: Clinical Perspectives and Basic Implications.
PMID:32324503
Purification of Bionanoparticles.
PMID:32313384
The Biological Functions of Non-coding RNAs: From a Line to a Circle.
PMID:32309571
Identification and Ranking of Biomedical Informatics Researcher Citation Statistics through a Google Scholar Scraper.
PMID:32308860
Fungal evolution: cellular, genomic and metabolic complexity.
PMID:32301582
RepeatModeler2 for automated genomic discovery of transposable element families.
PMID:32300014
TranspoScope: interactive visualization of retrotransposon insertions.
PMID:32298413
A reference map of the human binary protein interactome.
PMID:32296183
Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes.
PMID:32286261
An ancient evolutionary connection between Ribonuclease A and EndoU families.
PMID:32284351
Gallop Racing Shifts Mature mRNA towards Introns: Does Exercise-Induced Stress Enhance Genome Plasticity?
PMID:32283859
Tumour grade significantly correlates with total dysfunction of tumour tissue-infiltrating lymphocytes in renal cell carcinoma.
PMID:32277125
Codon Usage and Splicing Jointly Influence mRNA Localization.
PMID:32275854
Systems Biochemistry Approaches to Defining Mitochondrial Protein Function.
PMID:32268114
Long Non-coding RNAs: Major Regulators of Cell Stress in Cancer.
PMID:32266130
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID:32252787
SAMHD1 Functions and Human Diseases.
PMID:32244340
DNA methylation profiling identifies a high effect genetic variant for lipoprotein(a) levels.
PMID:32237968
Reciprocal regulation between alternative splicing and the DNA damage response.
PMID:32236390
Considerations for Using the Vasculature as a Coordinate System to Map All the Cells in the Human Body.
PMID:32232057
Differential Responses of LINE-1 in the Dentate Gyrus, Striatum and Prefrontal Cortex to Chronic Neurotoxic Methamphetamine: A Study in Rat Brain.
PMID:32231019
The genome-wide landscape of C:G > T:A polymorphism at the CpG contexts in the human population.
PMID:32228436
In or Out? New Insights on Exon Recognition through Splice-Site Interdependency.
PMID:32225107
Divergence-Based Introgression Polarization.
PMID:32219392
Viral component of the human genome.
PMID:32214476
Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
PMID:32213349
How We Think about Targeting RNA with Small Molecules.
PMID:32212706
Gene editing and CRISPR in the clinic: current and future perspectives.
PMID:32207531
Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin.
PMID:32203508
Long non-coding RNA GRASLND enhances chondrogenesis via suppression of the interferon type II signaling pathway.
PMID:32202492
Transient DNMT3L Expression Reinforces Chromatin Surveillance to Halt Senescence Progression in Mouse Embryonic Fibroblast.
PMID:32195249
Discussion of Trial Designs for Biomarker Identification and Validation Through the Use of Case Studies.
PMID:32190807
Dynamic LTR retrotransposon transcriptome landscape in septic shock patients.
PMID:32188504
Is Gene-Size an Issue for the Diagnosis of Skeletal Muscle Disorders?
PMID:32176652
Beyond classic editing: innovative CRISPR approaches for functional studies of long non-coding RNA.
PMID:32161809
Genomic Repeats Categorize Genes with Distinct Functions for Orchestrated Regulation.
PMID:32160538
In Vivo Delivery of Nucleic Acid-Encoded Monoclonal Antibodies.
PMID:32157600
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes.
PMID:32157095
Dynamic Signatures of the Epigenome: Friend or Foe?
PMID:32156057
SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes.
PMID:32153642
Jump around: transposons in and out of the laboratory.
PMID:32148769
A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals.
PMID:32145015
Genetic and Genomic Advances in Developmental Models: Applications for Nutrition Research.
PMID:32135011
RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells.
PMID:32127417
Dnmt3a and Dnmt3b-Decommissioned Fetal Enhancers are Linked to Kidney Disease.
PMID:32127410
Does DNA Methylation Matter in FSHD?
PMID:32121044
Transgene-mediated skeletal phenotypic variation in zebrafish.
PMID:32112658
Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions.
PMID:32110248
Mutational Load and the Functional Fraction of the Human Genome.
PMID:32108234
Data libraries - the missing element for modeling biological systems.
PMID:32100391
Precision health: A nursing perspective.
PMID:32099853
Villains or heroes? The raison d'être of viruses.
PMID:32099651
Micro RNA Molecules as Modulators of Treatment Resistance, Immune Checkpoints Controllers and Sensitive Biomarkers in Glioblastoma Multiforme.
PMID:32098401
Role of Non-Coding RNAs in the Development of Targeted Therapy and Immunotherapy Approaches for Chronic Lymphocytic Leukemia.
PMID:32098192
Finding and extending ancient simple sequence repeat-derived regions in the human genome.
PMID:32095164
Systematic identification of silencers in human cells.
PMID:32094911
Awakening the dark side: retrotransposon activation in neurodegenerative disorders.
PMID:32092528
A guide to naming human non-coding RNA genes.
PMID:32090359
Minireview on the Relations between Gut Microflora and Parkinson's Disease: Further Biochemical (Oxidative Stress), Inflammatory, and Neurological Particularities.
PMID:32089768
Insertion of LINE-1 Retrotransposon Inducing Exon Inversion Causes a Rotor Syndrome Phenotype.
PMID:32082363
Brain Cytoplasmic RNAs in Neurons: From Biosynthesis to Function.
PMID:32079202
Differential Allele-Specific Expression Uncovers Breast Cancer Genes Dysregulated by Cis Noncoding Mutations.
PMID:32078798
Decoding a highly mixed Kazakh genome.
PMID:32076829
Short interspersed nuclear element (SINE)-mediated post-transcriptional effects on human and mouse gene expression: SINE-UP for active duty.
PMID:32075563
sRNA/L1 retrotransposition: using siRNAs and miRNAs to expand the applications of the cell culture-based LINE-1 retrotransposition assay.
PMID:32075559
An atlas of transposable element-derived alternative splicing in cancer.
PMID:32075558
Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells.
PMID:32075555
Widespread correlation of KRAB zinc finger protein binding with brain-developmental gene expression patterns.
PMID:32075554
Transposable elements have contributed human regulatory regions that are activated upon bacterial infection.
PMID:32075553
BlobToolKit - Interactive Quality Assessment of Genome Assemblies.
PMID:32071071
Traveler, a New DD35E Family of Tc1/Mariner Transposons, Invaded Vertebrates Very Recently.
PMID:32068835
Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines.
PMID:32055257
What animals can teach us about evolution, the human genome, and human disease.
PMID:32054372
Protective immunity elicited by the nematode-conserved As37 recombinant protein against Ascaris suum infection.
PMID:32053593
Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions.
PMID:32051932
The draft genome of mandrill (Mandrillus sphinx): An Old World monkey.
PMID:32051450
Re-recognition of pseudogenes: From molecular to clinical applications.
PMID:32042317
Tissue and cancer-specific expression of DIEXF is epigenetically mediated by an Alu repeat.
PMID:32041475
Artificial Intelligence for Cardiac Imaging-Genetics Research.
PMID:32039240
Studies on the Small Body Size Mouse Developed by Mutagen N-Ethyl-N-nitrosourea.
PMID:32038779
Pan-genomics in the human genome era.
PMID:32034321
Human Long Noncoding RNA Interactome: Detection, Characterization and Function.
PMID:32033158
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
PMID:32024998
Genetic tests by next-generation sequencing in children with developmental delay and/or intellectual disability.
PMID:32024334
Prediction of short-term neonatal complications in preterm infants using exome-wide genetic variation and gestational age: a pilot study.
PMID:32023625
Precise hepatectomy in the intelligent digital era.
PMID:32015674
Unveiling ncRNA regulatory axes in atherosclerosis progression.
PMID:32009226
ATAC-Me Captures Prolonged DNA Methylation of Dynamic Chromatin Accessibility Loci during Cell Fate Transitions.
PMID:31999955
A New Weighted Imputed Neighborhood-Regularized Tri-Factorization One-Class Collaborative Filtering Algorithm: Application to Target Gene Prediction of Transcription Factors.
PMID:31995498
Towards a comprehensive catalogue of validated and target-linked human enhancers.
PMID:31988385
Tetranucleotide Microsatellite Mutational Behavior Assessed in Real Time: Implications for Future Microsatellite Panels.
PMID:31982570
Aberrantly High Levels of Somatic LINE-1 Expression and Retrotransposition in Human Neurological Disorders.
PMID:31969897
Worldwide carrier frequency and genetic prevalence of autosomal recessive inherited retinal diseases.
PMID:31964843
A potential new mechanism for pregnancy loss: considering the role of LINE-1 retrotransposons in early spontaneous miscarriage.
PMID:31964400
MicroRNAs in Vascular Eye Diseases.
PMID:31963809
In-Depth Mapping of the Urinary N-Glycoproteome: Distinct Signatures of ccRCC-related Progression.
PMID:31963743
Idiopathic Pulmonary Fibrosis: Pathogenesis and the Emerging Role of Long Non-Coding RNAs.
PMID:31947693
The Missing "lnc" between Genetics and Cardiac Disease.
PMID:31947625
The Developmental Gene Hypothesis for Punctuated Equilibrium: Combined Roles of Developmental Regulatory Genes and Transposable Elements.
PMID:31943266
A draft genome sequence of the elusive giant squid, Architeuthis dux.
PMID:31942620
Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters.
PMID:31938044
PP2A Phosphatases Take a Giant Leap in the Post-Genomics Era.
PMID:31929724
Cell-free DNA donor fraction analysis in pediatric and adult heart transplant patients by multiplexed allele-specific quantitative PCR: Validation of a rapid and highly sensitive clinical test for stratification of rejection probability.
PMID:31929557
How technical progress reshaped behavioral neuroendocrinology during the last 50 years… and some methodological remarks.
PMID:31927020
Comparative analysis on the expression of L1 loci using various RNA-Seq preparations.
PMID:31921361
A brief history of human disease genetics.
PMID:31915397
The p53 family reaches the final frontier: the variegated regulation of the dark matter of the genome by the p53 family in cancer.
PMID:31910062
Unzipping haplotypes in diploid and polyploid genomes.
PMID:31908732
Structural variant identification and characterization.
PMID:31907725
The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation.
PMID:31901448
Alpha-hemoglobin-stabilizing protein (AHSP): a modulatory factor in β-thalassemia.
PMID:31894534
LINE-1 ORF2p expression is nearly imperceptible in human cancers.
PMID:31892958
Targeted viral vector transduction of relaxin-3 neurons in the rat nucleus incertus using a novel cell-type specific promoter.
PMID:31890981
Long walk to genomics: History and current approaches to genome sequencing and assembly.
PMID:31890139
A re-evaluation of LINE-1 ORF2 expression in LNCaP prostate cancer cells.
PMID:31890047
Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation.
PMID:31886458
Immunotherapy and next-generation sequencing guided therapy for precision oncology: What have we learnt and what does the future hold?
PMID:31886407
B2 and ALU retrotransposons are self-cleaving ribozymes whose activity is enhanced by EZH2.
PMID:31871160
Epigenetic therapy of myelodysplastic syndromes connects to cellular differentiation independently of endogenous retroelement derepression.
PMID:31870430
A network embedding model for pathogenic genes prediction by multi-path random walking on heterogeneous network.
PMID:31865919
A unified STR profiling system across multiple species with whole genome sequencing data.
PMID:31861983
Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes.
PMID:31860668
Nucleotide composition of transposable elements likely contributes to AT/GC compositional homogeneity of teleost fish genomes.
PMID:31857829
Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology.
PMID:31853540
Novel human sex-typing strategies based on the autism candidate gene NLGN4X and its male-specific gametologue NLGN4Y.
PMID:31852540
Long non-coding RNAs in ovarian cancer: expression profile and functional spectrum.
PMID:31847695
Application of DArT seq derived SNP tags for comparative genome analysis in fishes; An alternative pipeline using sequence data from a non-traditional model species, Macquaria ambigua.
PMID:31830141
A primate-specific retroviral enhancer wires the XACT lncRNA into the core pluripotency network in humans.
PMID:31827084
Arteria: An automation system for a sequencing core facility.
PMID:31825479
TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model.
PMID:31824778
Targeted deep-intronic sequencing in a cohort of unexplained cases of suspected Lynch syndrome.
PMID:31822864
Glyoxalase 1 gene improves the antistress capacity and reduces the immune inflammatory response.
PMID:31822263
Evolutionary Forces and Codon Bias in Different Flavors of Intrinsic Disorder in the Human Proteome.
PMID:31820049
Nutritional Factors Modulating Alu Methylation in an Italian Sample from The Mark-Age Study Including Offspring of Healthy Nonagenarians.
PMID:31817660
Conversion of DNA Sequences: From a Transposable Element to a Tandem Repeat or to a Gene.
PMID:31817529
Pharmacogenomics In Pharmacy Practice: Current Perspectives.
PMID:31807435
Recapitulation-like developmental transitions of chromatin accessibility in vertebrates.
PMID:31807314
Endogenous Retroviruses Activity as a Molecular Signature of Neurodevelopmental Disorders.
PMID:31801288
Artificial intelligence for precision medicine in neurodevelopmental disorders.
PMID:31799421
Endogenous retroviruses are associated with hippocampus-based memory impairment.
PMID:31792184
High-throughput long paired-end sequencing of a Fosmid library by PacBio.
PMID:31788019
The Role of SINE-VNTR-Alu (SVA) Retrotransposons in Shaping the Human Genome.
PMID:31783611
Advances in genetics toward identifying pathogenic cell states of rheumatoid arthritis.
PMID:31782165
Sam68 binds Alu-rich introns in SMN and promotes pre-mRNA circularization.
PMID:31777926
GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs.
PMID:31776332
TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation.
PMID:31759822
Integrative genetic map of repetitive DNA in the sole Solea senegalensis genome shows a Rex transposon located in a proto-sex chromosome.
PMID:31748593
Role of Molecular Profiling of Pancreatic Cancer After Neoadjuvant Therapy: Does it Change Practice?
PMID:31745905
Snapshots of a genetic cut-and-paste.
PMID:31745352
Transposable element expression in tumors is associated with immune infiltration and increased antigenicity.
PMID:31745090
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.
PMID:31744855
Comparative genomic analysis of eutherian connexin genes.
PMID:31729432
Soluble PD-L1 generated by endogenous retroelement exaptation is a receptor antagonist.
PMID:31729316
[Mass spectrometry-applications in pathology].
PMID:31713660
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
PMID:31713622
Synthetic lethality as an engine for cancer drug target discovery.
PMID:31712683
X-ray Structures of the Post-fusion 6-Helix Bundle of the Human Syncytins and their Functional Implications.
PMID:31711961
Genetics of Childhood-onset Schizophrenia 2019 Update.
PMID:31708045
Dynamic DNA Energy Landscapes and Substrate Complexity in Triplet Repeat Expansion and DNA Repair.
PMID:31698848
Nature at 150: evidence in pursuit of truth.
PMID:31695220
Ensembl 2020.
PMID:31691826
A non-coding genetic variant associated with abdominal aortic aneurysm alters ERG gene regulation.
PMID:31691800
The Concomitant Expression of Human Endogenous Retroviruses and Embryonic Genes in Cancer Cells under Microenvironmental Changes is a Potential Target for Antiretroviral Drugs.
PMID:31691184
Recurrent intragenic exon rearrangements of SOBP and AUTS2 in non-Hodgkin B-cell lymphoma.
PMID:31686349
Roles of Topoisomerases in Heterochromatin, Aging, and Diseases.
PMID:31683993
Differential regulatory network-based quantification and prioritization of key genes underlying cancer drug resistance based on time-course RNA-seq data.
PMID:31682596
Widespread sex dimorphism in aging and age-related diseases.
PMID:31677133
The Many Faces of Gene Regulation in Cancer: A Computational Oncogenomics Outlook.
PMID:31671657
Innovating the Concept and Practice of Two-Dimensional Gel Electrophoresis in the Analysis of Proteomes at the Proteoform Level.
PMID:31671630
Protein Structural Information and Evolutionary Landscape by In Vitro Evolution.
PMID:31670785
Comprehensive Scanning Mutagenesis of Human Retrotransposon LINE-1 Identifies Motifs Essential for Function.
PMID:31666291
A 96-multiplex capillary electrophoresis screening platform for product based evolution of P450 BM3.
PMID:31664146
Human-specific tandem repeat expansion and differential gene expression during primate evolution.
PMID:31659027
Molecular determinants of drug response in TNBC cell lines.
PMID:31655920
Comparative Genomics Analysis Reveals High Levels of Differential Retrotransposition among Primates from the Hominidae and the Cercopithecidae Families.
PMID:31651947
Deep Learning Enables Accurate Prediction of Interplay Between lncRNA and Disease.
PMID:31649723
Retrotransposons spread potential cis-regulatory elements during mammary gland evolution.
PMID:31642473
DNA methylation of individual repetitive elements in hepatitis C virus infection-induced hepatocellular carcinoma.
PMID:31639042
Evolutionary history and classification of Micropia retroelements in Drosophilidae species.
PMID:31622354
Recovery of non-reference sequences missing from the human reference genome.
PMID:31619167
Five months of voluntary wheel running downregulates skeletal muscle LINE-1 gene expression in rats.
PMID:31618076
Children With Autism Spectrum Disorder and Their Mothers Share Abnormal Expression of Selected Endogenous Retroviruses Families and Cytokines.
PMID:31616420
Specification of the First Mammalian Cell Lineages In Vivo and In Vitro.
PMID:31615786
Changing expression profiles of lncRNAs, circRNAs and mRNAs in esophageal squamous carcinoma.
PMID:31612046
A Japanese history of the Human Genome Project.
PMID:31611500
Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development.
PMID:31608120
Introducing the first whole genomes of nationals from the United Arab Emirates.
PMID:31604968
On the Function of Trans-Splicing: No Evidence for Widespread Proteome Diversification in Trypanosomes.
PMID:31599940
Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.
PMID:31599933
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.
PMID:31599596
Retroelement-Linked H3K4me1 Histone Tags Uncover Regulatory Evolution Trends of Gene Enhancers and Feature Quickly Evolving Molecular Processes in Human Physiology.
PMID:31597351
Co-Localization of DNA i-Motif-Forming Sequences and 5-Hydroxymethyl-cytosines in Human Embryonic Stem Cells.
PMID:31597270
Lung genotoxicity of benzo(a)pyrene in vivo involves reactivation of LINE-1 retrotransposon and early reprogramming of oncogenic regulatory networks.
PMID:31596105
Functional Genomics of the Retina to Elucidate its Construction and Deconstruction.
PMID:31590277
Reporting on the future of integrative structural biology ORAU workshop.
PMID:31585877
Synonymous genome recoding: a tool to explore microbial biology and new therapeutic strategies.
PMID:31584076
Unraveling the Heterogeneous Mutational Signature of Spontaneously Developing Tumors in MLH1-/- Mice.
PMID:31581674
Break-induced replication plays a prominent role in long-range repeat-mediated deletion.
PMID:31571254
Up-regulation of ZFAS1 indicates dismal prognosis for cholangiocarcinoma and promotes proliferation and metastasis by modulating USF1 via miR-296-5p.
PMID:31565837
Adipose Tissue Gene Expression Associations Reveal Hundreds of Candidate Genes for Cardiometabolic Traits.
PMID:31564431
Discovery of Novel Sequences in 1,000 Swedish Genomes.
PMID:31560401
Large, three-generation human families reveal post-zygotic mosaicism and variability in germline mutation accumulation.
PMID:31549960
RNA ligation precedes the retrotransposition of U6/LINE-1 chimeric RNA.
PMID:31548405
RNA-seq as a tool for evaluating human embryo competence.
PMID:31548358
Dual-Specific Protein and Lipid Phosphatase PTEN and Its Biological Functions.
PMID:31548229
Chromosomal rearrangements as a source of new gene formation in Drosophila yakuba.
PMID:31545792
Chromosome-level assembly of the mustache toad genome using third-generation DNA sequencing and Hi-C analysis.
PMID:31544214
Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.
PMID:31537640
LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly.
PMID:31537638
Xist RNA in action: Past, present, and future.
PMID:31537017
Tracking the Fate of Endogenous Retrovirus Segregation in Wild and Domestic Cats.
PMID:31534037
Overlapping protein-coding genes in human genome and their coincidental expression in tissues.
PMID:31527706
The first enhancer in an enhancer chain safeguards subsequent enhancer-promoter contacts from a distance.
PMID:31514731
SKF-LDA: Similarity Kernel Fusion for Predicting lncRNA-Disease Association.
PMID:31514111
Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment.
PMID:31513617
Mechanisms of nuclear mRNA export: A structural perspective.
PMID:31513326
Current Trends in Applications of Circulatory Microchimerism Detection in Transplantation.
PMID:31509957
The Evolving Field of Genetic Epidemiology: From Familial Aggregation to Genomic Sequencing.
PMID:31509181
Socioeconomic status and DNA methylation from birth through mid-childhood: a prospective study in Project Viva.
PMID:31509016
5-Azacytidine modulates CpG methylation levels of EZH2 and NOTCH1 in myelodysplastic syndromes.
PMID:31506740
SNV identification from single-cell RNA sequencing data.
PMID:31504520
Detection of Microsatellite Instability Biomarkers via Next-Generation Sequencing.
PMID:31502149
The NIH Common Fund/Roadmap Epigenomics Program: Successes of a comprehensive consortium.
PMID:31501771
Whole Genome Analyses of Chinese Population and De Novo Assembly of A Northern Han Genome.
PMID:31494266
Functional disease architectures reveal unique biological role of transposable elements.
PMID:31492842
Retrotransposon insertions can initiate colorectal cancer and are associated with poor survival.
PMID:31492840
A novel evolutionary model for constructing gene coexpression networks with comprehensive features.
PMID:31492104
H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 Histone Tags Suggest Distinct Regulatory Evolution of Open and Condensed Chromatin Landmarks.
PMID:31491936
Food Safety and Nutraceutical Potential of Caramel Colour Class IV Using In Vivo and In Vitro Assays.
PMID:31491925
Expanding the scope and scale of microbiome research.
PMID:31488207
An LTR retrotransposon-derived lncRNA interacts with RNF169 to promote homologous recombination.
PMID:31486214
Clinical value of non-coding RNAs in cardiovascular, pulmonary, and muscle diseases.
PMID:31483703
Transposable Elements, Inflammation, and Neurological Disease.
PMID:31481926
Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays.
PMID:31481462
The Length of the Expressed 3' UTR Is an Intermediate Molecular Phenotype Linking Genetic Variants to Complex Diseases.
PMID:31475030
Dynamical Electrical Complexity Is Reduced during Neuronal Differentiation in Autism Spectrum Disorder.
PMID:31474529
Accumulation of Circulating Cell-Free CpG-Enriched Ribosomal DNA Fragments on the Background of High Endonuclease Activity of Blood Plasma in Schizophrenic Patients.
PMID:31467866
Emerging epigenomic landscapes of pancreatic cancer in the era of precision medicine.
PMID:31462645
A concise review of human brain methylome during aging and neurodegenerative diseases.
PMID:31462381
β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library.
PMID:31453223
Intrauterine programming of obesity and type 2 diabetes.
PMID:31451874
Chromosomics: Bridging the Gap between Genomes and Chromosomes.
PMID:31434289
The lncRNA Malat1 functions as a ceRNA to contribute to berberine-mediated inhibition of HMGB1 by sponging miR-181c-5p in poststroke inflammation.
PMID:31431734
Identification of mutations in HEXA and HEXB in Sandhoff and Tay-Sachs diseases: a new large deletion caused by Alu elements in HEXA.
PMID:31428437
Investigation of NF-κB-94ins/del ATTG and CARD8 (rs2043211) Gene Polymorphism in Acute Lymphoblastic Leukemia.
PMID:31428046
TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements.
PMID:31425522
Transposable element-mediated structural variation analysis in dog breeds using whole-genome sequencing.
PMID:31414176
Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function.
PMID:31413151
Increased HERV-E clone 4-1 expression contributes to DNA hypomethylation and IL-17 release from CD4+ T cells via miR-302d/MBD2 in systemic lupus erythematosus.
PMID:31412880
Biophysics and the Genomic Sciences.
PMID:31409480
A Long Polymorphic GT Microsatellite within a Gene Promoter Mediates Non-Imprinted Allele-Specific DNA Methylation of a CpG Island in a Goldfish Inter-Strain Hybrid.
PMID:31409051
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
PMID:31406327
ADAR1: "Editor-in-Chief" of Cytoplasmic Innate Immunity.
PMID:31404141
Is it time to change the reference genome?
PMID:31399121
Dietary Patterns are Associated with Leukocyte LINE-1 Methylation in Women: A Cross-Sectional Study in Southern Italy.
PMID:31395820
A Genome Model to Explain Major Features of Neurodevelopmental Disorders in Newborns.
PMID:31391780
ARID1A and PI3-kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion.
PMID:31391455
Correlation of long interspersed element-1 open reading frame 1 and c-Met proto-oncogene protein expression in ovarian cancer.
PMID:31388980
Transmissible Cancers and Immune Downregulation in Tasmanian Devil (Sacrophilus harrisii) and Canine Populations.
PMID:31387668
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
PMID:31375807
Patterns of conservation of spliceosomal intron structures and spliceosome divergence in representatives of the diplomonad and parabasalid lineages.
PMID:31375061
Diseases of the nERVous system: retrotransposon activity in neurodegenerative disease.
PMID:31372185
Rare and common variant discovery in complex disease: the IBD case study.
PMID:31363759
Endogenous Retrovirus-Derived Long Noncoding RNA Enhances Innate Immune Responses via Derepressing RELA Expression.
PMID:31363026
Microsatellite Marker Analysis for Laboratory Mice Profiling.
PMID:31360681
AluMine: alignment-free method for the discovery of polymorphic Alu element insertions.
PMID:31360240
FERMI: A Novel Method for Sensitive Detection of Rare Mutations in Somatic Tissue.
PMID:31352405
High Prevalence and Disease Correlation of Autoantibodies Against p40 Encoded by Long Interspersed Nuclear Elements in Systemic Lupus Erythematosus.
PMID:31342656
Human APOBEC3G Prevents Emergence of Infectious Endogenous Retrovirus in Mice.
PMID:31341050
Heterogeneous transposable elements as silencers, enhancers and targets of meiotic recombination.
PMID:31332531
Non-cell autonomous mechanism of Parkinson's disease pathology caused by G2019S LRRK2 mutation in Ashkenazi Jewish patient: Single cell analysis.
PMID:31330122
Repeat-associated RNA structure and aberrant splicing.
PMID:31323433
Identifying causal variants and genes using functional genomics in specialized cell types and contexts.
PMID:31317254
An Evaluation of Machine Learning Approaches for the Prediction of Essential Genes in Eukaryotes Using Protein Sequence-Derived Features.
PMID:31312416
GC content of vertebrate exome landscapes reveal areas of accelerated protein evolution.
PMID:31311498
Fast and accurate medication identification.
PMID:31304359
Sleeping beauty genetic screen identifies miR-23b::BTBD7 gene interaction as crucial for colorectal cancer metastasis.
PMID:31303496
Non-Coding RNAs and their Integrated Networks.
PMID:31301674
Discovery of receptor-ligand interfaces in the immunoglobulin superfamily.
PMID:31298437
Transposable Elements and Their Epigenetic Regulation in Mental Disorders: Current Evidence in the Field.
PMID:31293617
Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data.
PMID:31289836
Alu RNA Modulates the Expression of Cell Cycle Genes in Human Fibroblasts.
PMID:31284509
Brain organoids and insights on human evolution.
PMID:31275562
Mode and Tempo of Microsatellite Length Change in a Malaria Parasite Mutation Accumulation Experiment.
PMID:31273388
Genetic Variation, Comparative Genomics, and the Diagnosis of Disease.
PMID:31269367
Dynamic expression of tRNA-derived small RNAs define cellular states.
PMID:31267708
Centralized scientific communities are less likely to generate replicable results.
PMID:31264964
LLCLPLDA: a novel model for predicting lncRNA-disease associations.
PMID:31250107
Molecular Mechanisms and Determinants of Innovative Correction Approaches in Coagulation Factor Deficiencies.
PMID:31234407
Construction of JRG (Japanese reference genome) with single-molecule real-time sequencing.
PMID:31231536
New pathologic mechanisms in nucleotide repeat expansion disorders.
PMID:31229686
SIRT7 mediates L1 elements transcriptional repression and their association with the nuclear lamina.
PMID:31226208
The role of hydrophobic matching on transmembrane helix packing in cells.
PMID:31225439
Exome Sequencing in Clinical Hepatology.
PMID:31222768
Expression of GCRG213p, LINE-1 endonuclease variant, significantly different in gastric complete and incomplete intestinal metaplasia.
PMID:31221180
Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths.
PMID:31214686
RNA-protein interactions: disorder, moonlighting and junk contribute to eukaryotic complexity.
PMID:31213136
Genetic and Epigenetic Fine Mapping of Complex Trait Associated Loci in the Human Liver.
PMID:31204013
The Hunt for Degrons of the 26S Proteasome.
PMID:31200568
Identification of a Retroelement-Containing Human Transcript Induced in the Nucleus by Vaccination.
PMID:31200438
Using phenome-wide association studies to examine the effect of environmental exposures on human health.
PMID:31200158
Early life exposures, neurodevelopmental disorders, and transposable elements.
PMID:31193573
Patterns in the genome.
PMID:31189906
Genome sequencing-the dawn of a game-changing era.
PMID:31189904
The Potential Role of Genomic Medicine in the Therapeutic Management of Rheumatoid Arthritis.
PMID:31185701
Jérôme Lejeune passed away 25 years ago.
PMID:31182939
CFIm25 and alternative polyadenylation: Conflicting roles in cancer.
PMID:31181319
Novel de novo frameshift variant in the ASXL3 gene in a child with microcephaly and global developmental delay.
PMID:31180560
Mechanisms of genome evolution in Candida albicans.
PMID:31176092
Translational Metabolomics: Current Challenges and Future Opportunities.
PMID:31174372
First Responder to Genomic Information: A Guide for Primary Care Providers.
PMID:31172371
Characterization of bovine (Bos taurus) imprinted genes from genomic to amino acid attributes by data mining approaches.
PMID:31170205
Misassembly of long reads undermines de novo-assembled ethnicity-specific genomes: validation in a Chinese Han population.
PMID:31168775
Modern technologies and algorithms for scaffolding assembled genomes.
PMID:31166948
WashU Epigenome Browser update 2019.
PMID:31165883
Human protein-coding genes and gene feature statistics in 2019.
PMID:31164174
Negative regulation of miR-1275 by H3K27me3 is critical for glial induction of glioblastoma cells.
PMID:31162799
Emerging roles of histone modifications and HDACs in RNA splicing.
PMID:31162605
LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo.
PMID:31159720
RNA Next-Generation Sequencing and a Bioinformatics Pipeline to Identify Expressed LINE-1s at the Locus-Specific Level.
PMID:31157783
The Potential for microRNA Therapeutics and Clinical Research.
PMID:31156715
Variable Baseline Papio cynocephalus Endogenous Retrovirus (PcEV) Expression Is Upregulated in Acutely SIV-Infected Macaques and Correlated to STAT1 Expression in the Spleen.
PMID:31156613
ERCC1/XPF Is Important for Repair of DNA Double-Strand Breaks Containing Secondary Structures.
PMID:31153042
Expression dynamics of repetitive DNA in early human embryonic development.
PMID:31151386
Health Disparities and Sepsis: a Systematic Review and Meta-Analysis on the Influence of Race on Sepsis-Related Mortality.
PMID:31144133
Genomics and data science: an application within an umbrella.
PMID:31142351
The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.
PMID:31139867
Tracing the history of LINE and SINE extinction in sigmodontine rodents.
PMID:31139266
Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation.
PMID:31135340
Long noncoding-RNA component of mitochondrial RNA processing endoribonuclease is involved in the progression of cholangiocarcinoma by regulating microRNA-217.
PMID:31111617
Population genetic data of 20 insertion-null allele markers in the Andalusian population.
PMID:31111220
An ATAC-seq atlas of chromatin accessibility in mouse tissues.
PMID:31110271
MERMAID: dedicated web server to prepare and run coarse-grained membrane protein dynamics.
PMID:31106328
Molecular pattern of lncRNAs in hepatocellular carcinoma.
PMID:31097003
Determination and analysis of agonist and antagonist potential of naturally occurring flavonoids for estrogen receptor (ERα) by various parameters and molecular modelling approach.
PMID:31092862
c-Myc induced the regulation of long non-coding RNA RHPN1-AS1 on breast cancer cell proliferation via inhibiting P53.
PMID:31089812
In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survival.
PMID:31089191
ULTRA: A Model Based Tool to Detect Tandem Repeats.
PMID:31080962
Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs.
PMID:31080521
Recognition of 3'-end L1, Alu, processed pseudogenes, and mRNA stem-loops in the human genome using sequence-based and structure-based machine-learning models.
PMID:31076573
Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population.
PMID:31072070
De novo emergence and potential function of human-specific tandem repeats in brain-related loci.
PMID:31069507
Humans and Chimpanzees Display Opposite Patterns of Diversity in Arylamine N-Acetyltransferase Genes.
PMID:31068377
Composite Analysis of the Virome and Bacteriome of HIV/HPV Co-Infected Women Reveals Proxies for Immunodeficiency.
PMID:31067713
Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution.
PMID:31064091
Target Gene Prediction of Transcription Factor Using a New Neighborhood-regularized Tri-factorization One-class Collaborative Filtering Algorithm.
PMID:31061989
Emergence of the Dedifferentiated Phenotype in Hepatocyte-Derived Tumors in Mice: Roles of Oncogene-Induced Epigenetic Alterations.
PMID:31061957
Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines.
PMID:31061680
Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus).
PMID:31060501
Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation.
PMID:31058854
Systems biology in inflammatory bowel diseases: on the way to precision medicine.
PMID:31040620
What viruses tell us about evolution and immunity: beyond Darwin?
PMID:31032941
Dissecting Motor Neuron Disease With Drosophila melanogaster.
PMID:31031583
DeePromoter: Robust Promoter Predictor Using Deep Learning.
PMID:31024615
Gene Lifestyle Interactions With Relation to Obesity, Cardiometabolic, and Cardiovascular Traits Among South Asians.
PMID:31024458
The impact of poly-A microsatellite heterologies in meiotic recombination.
PMID:31023833
Prediction of Human Immunodeficiency Virus Type 1 Subtype-Specific Off-Target Effects Arising from CRISPR-Cas9 Gene Editing Therapy.
PMID:31021222
Impact of Genetic Variation on CRISPR-Cas Targeting.
PMID:31021199
Genetic Variations and Precision Medicine.
PMID:31019429
Sequencing of human genomes with nanopore technology.
PMID:31015479
Mouse germ line mutations due to retrotransposon insertions.
PMID:31011371
miR-128 Restriction of LINE-1 (L1) Retrotransposition Is Dependent on Targeting hnRNPA1 mRNA.
PMID:31010097
ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing.
PMID:31010074
Subtype classification and functional annotation of L1Md retrotransposon promoters.
PMID:31007728
Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.
PMID:31007525
Long Noncoding RNA and Epithelial Mesenchymal Transition in Cancer.
PMID:31003545
Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.
PMID:31000506
The Many Faces of EpigeneticsOxford, December 2017.
PMID:30994386
Protein Structure-Guided Hidden Markov Models (HMMs) as A Powerful Method in the Detection of Ancestral Endogenous Viral Elements.
PMID:30986983
HERVs, immunity, and autoimmunity: understanding the connection.
PMID:30984482
Evidence for ligandable sites in structured RNA throughout the Protein Data Bank.
PMID:30982658
Large-scale 3D chromatin reconstruction from chromosomal contacts.
PMID:30967119
A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side.
PMID:30967116
Small molecule targeting of RNA structures in neurological disorders.
PMID:30964958
Genetic and epigenetic sex-specific adaptations to endurance exercise.
PMID:30957644
Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication.
PMID:30955886
Detailed methylation map of LINE-1 5'-promoter region reveals hypomethylated CpG hotspots associated with tumor tissue specificity.
PMID:30955237
One hundred years of Drosophila cancer research: no longer in solitude.
PMID:30952627
A Pipeline for Faecal Host DNA Analysis by Absolute Quantification of LINE-1 and Mitochondrial Genomic Elements Using ddPCR.
PMID:30944341
Mendelian Inconsistent Signatures from 1314 Ancestrally Diverse Family Trios Distinguish Biological Variation from Sequencing Error.
PMID:30942611
Viruses and Evolution - Viruses First? A Personal Perspective.
PMID:30941110
Regulatory Non-coding RNAs Network in Non-alcoholic Fatty Liver Disease.
PMID:30941061
Discovery of Teneurins.
PMID:30941006
On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses.
PMID:30935103
Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer.
PMID:30934003
BZLF1 interacts with chromatin remodelers promoting escape from latent infections with EBV.
PMID:30926617
The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution.
PMID:30918947
Overlooked: Extrachromosomal DNA and Their Possible Impact on Whole Genome Sequencing.
PMID:30918452
Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes?
PMID:30917603
GenomeWarp: an alignment-based variant coordinate transformation.
PMID:30916319
Repeat-Associated Non-ATG Translation: Molecular Mechanisms and Contribution to Neurological Disease.
PMID:30909783
SMARCAD1 ATPase activity is required to silence endogenous retroviruses in embryonic stem cells.
PMID:30902974
Functional roles of the human ribonuclease A superfamily in RNA metabolism and membrane receptor biology.
PMID:30902663
Nutrigenomics of Vitamin D.
PMID:30901909
The impact of transposable element activity on therapeutically relevant human stem cells.
PMID:30899334
Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome.
PMID:30899333
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.
PMID:30894839
Predicting mutations deleterious to function in beta-lactamase TEM1 using MM-GBSA.
PMID:30889230
Amplification Dynamics of Platy-1 Retrotransposons in the Cebidae Platyrrhine Lineage.
PMID:30888417
Primate piRNA Cluster Evolution Suggests Limited Relevance of Pseudogenes in piRNA-Mediated Gene Regulation.
PMID:30888404
Long Noncoding RNA and Protein Interactions: From Experimental Results to Computational Models Based on Network Methods.
PMID:30875752
Glass confers rhabdomeric photoreceptor identity in Drosophila, but not across all metazoans.
PMID:30873275
Similarities and differences between variants called with human reference genome HG19 or HG38.
PMID:30871461
Synthetic Lethality in Lung Cancer-From the Perspective of Cancer Genomics.
PMID:30871030
Increased Transfection of the Easily Oxidizable GC-Rich DNA Fragments into the MCF7 Breast Cancer Cell.
PMID:30867888
A comparative survey of microsatellites among wild and domestic cat provides valuable resources for marker development.
PMID:30864111
KMT1 family methyltransferases regulate heterochromatin-nuclear periphery tethering via histone and non-histone protein methylation.
PMID:30858340
Translating Pharmacogenetics and Pharmacogenomics to the Clinic: Progress in Human and Veterinary Medicine.
PMID:30854372
Recent Progress of Polymeric Nanogels for Gene Delivery.
PMID:30853837
LINE1 Derepression in Aged Wild-Type and SIRT6-Deficient Mice Drives Inflammation.
PMID:30853213
DNMT1 in Six2 Progenitor Cells Is Essential for Transposable Element Silencing and Kidney Development.
PMID:30850438
2018 William Allan Award: Discovering the Genes for Common Disease: From Families to Populations.
PMID:30849323
A novel nonsense variant in SUPT20H gene associated with Rheumatoid Arthritis identified by Whole Exome Sequencing of multiplex families.
PMID:30845214
Potential Implications of Long Noncoding RNAs in Autoimmune Diseases.
PMID:30838159
From Desert to Medicine: A Review of Camel Genomics and Therapeutic Products.
PMID:30838017
Tropomyosins: Potential Biomarkers for Urothelial Bladder Cancer.
PMID:30836651
Endogenous double-stranded Alu RNA elements stimulate IFN-responses in relapsing remitting multiple sclerosis.
PMID:30826177
Mapping the dsRNA World.
PMID:30824577
Epigenetic changes during aging and their reprogramming potential.
PMID:30822165
Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data.
PMID:30821816
Metabolic therapies inhibit tumor growth in vivo and in silico.
PMID:30816152
On the length, weight and GC content of the human genome.
PMID:30813969
Insights into DNA polymerase δ's mechanism for accurate DNA replication.
PMID:30810803
In-depth structural analysis of glycans in the gas phase.
PMID:30809341
Circular RNAs in immune responses and immune diseases.
PMID:30809295
Logic Regression Analysis of Gene Polymorphisms and HDL Levels in a Nationally Representative Sample of Iranian Adolescents: The CASPIAN-III Study.
PMID:30805016
Discrimination Between Self and Non-Self-Nucleic Acids by the Innate Immune System.
PMID:30798985
Cohort profile: design and methods in the eye and vision consortium of UK Biobank.
PMID:30796124
Completing the genetic spectrum influencing coronary artery disease: from germline to somatic variation.
PMID:30789660
Prostate-specific loss of UXT promotes cancer progression.
PMID:30774773
Motor neuron disease-associated loss of nuclear TDP-43 is linked to DNA double-strand break repair defects.
PMID:30770445
Endogenous Retroviruses Function as Gene Expression Regulatory Elements During Mammalian Pre-implantation Embryo Development.
PMID:30759824
[Breakthrough in understanding the molecular causes of psychiatric disorders].
PMID:30758637
Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics.
PMID:30739867
Retroelement-Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution.
PMID:30736359
Precision epidemiology for infectious disease control.
PMID:30728537
Estimation of duplication history under a stochastic model for tandem repeats.
PMID:30727948
Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory.
PMID:30723266
Profiling of LINE-1-Related Genes in Hepatocellular Carcinoma.
PMID:30717368
Deficiency of the Fanconi anemia E2 ubiqitin conjugase UBE2T only partially abrogates Alu-mediated recombination in a new model of homology dependent recombination.
PMID:30715513
The Lupus Susceptibility Locus Sgp3 Encodes the Suppressor of Endogenous Retrovirus Expression SNERV.
PMID:30709743
Identification of human endogenous retrovirus transcripts in Hodgkin Lymphoma cells.
PMID:30707417
Novel Discovery of LINE-1 in a Korean Individual by a Target Enrichment Method.
PMID:30699287
Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation.
PMID:30692270
ensembldb: an R package to create and use Ensembl-based annotation resources.
PMID:30689724
Whole genome sequencing of breast cancer.
PMID:30689231
A re-annotation of the Anopheles darlingi mobilome.
PMID:30672977
Where is genomics going next?
PMID:30670080
Characterizing the Major Structural Variant Alleles of the Human Genome.
PMID:30661756
Mouse PVRIG Has CD8+ T Cell-Specific Coinhibitory Functions and Dampens Antitumor Immunity.
PMID:30659055
Methylation of LINE-1 in cell-free DNA serves as a liquid biopsy biomarker for human breast cancers and dog mammary tumors.
PMID:30655558
Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription.
PMID:30652128
Functional Interplay between RNA Viruses and Non-Coding RNA in Mammals.
PMID:30646609
SQuIRE reveals locus-specific regulation of interspersed repeat expression.
PMID:30624635
Growth factor signalling in osteoarthritis.
PMID:30624091
Regulation of LINE-1 Elements by miR-128 Is Not Conserved in Mouse Embryonic Stem Cells.
PMID:30619491
Single-Cell Applications of Next-Generation Sequencing.
PMID:30617056
Expressional activation and functional roles of human endogenous retroviruses in cancers.
PMID:30614117
Revealing the alternative promoter usage of SAF/MAZ gene by bichromatic fluorescent reporter construct.
PMID:30610159
Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure.
PMID:30609992
Transcription of human endogenous retroviruses in human brain by RNA-seq analysis.
PMID:30605476
A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases.
PMID:30597923
Prolonged neuromuscular block associated with cholinesterase deficiency.
PMID:30593143
The ACCOuNT Consortium: A Model for the Discovery, Translation, and Implementation of Precision Medicine in African Americans.
PMID:30592548
BC200 RNA: An Emerging Therapeutic Target and Diagnostic Marker for Human Cancer.
PMID:30590906
Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers.
PMID:30588513
Next-generation sequencing of circulating tumor DNA for detection of gene mutations in lung cancer: implications for precision treatment.
PMID:30588023
Non-Coding RNAs in Glioma.
PMID:30583549
RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes.
PMID:30583062
LINE-1 and EPAS1 DNA methylation associations with high-altitude exposure.
PMID:30574831
Variation in proviral content among human genomes mediated by LTR recombination.
PMID:30568734
Accounting for heteroscedasticity and censoring in chromosome partitioning analyses.
PMID:30564443
Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools.
PMID:30561434
Long-read sequence and assembly of segmental duplications.
PMID:30559433
Prolactin-induced protein (PIP)-characterization and role in breast cancer progression.
PMID:30555735
Long Interspersed Nuclear Element 1 Retrotransposons Become Deregulated during the Development of Ovarian Cancer Precursor Lesions.
PMID:30553834
A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity.
PMID:30547805
Genomic Interventions in Medicine.
PMID:30546257
Global long terminal repeat activation participates in establishing the unique gene expression programme of classical Hodgkin lymphoma.
PMID:30546079
Repetitive Fragile Sites: Centromere Satellite DNA As a Source of Genome Instability in Human Diseases.
PMID:30544645
Facial Sadness Recognition is Modulated by Estrogen Receptor Gene Polymorphisms in Healthy Females.
PMID:30544539
Novel three‑lncRNA signature predicts survival in patients with pancreatic cancer.
PMID:30542694
The translation of non-canonical open reading frames controls mucosal immunity.
PMID:30542152
Structure, clustering and functional insights of repeats configurations in the upstream promoter region of the human coding genes.
PMID:30537933
Evolution of Our Understanding of the Hyperparathyroid Syndromes: A Historical Perspective.
PMID:30536424
Evolution of the Yeast Recombination Landscape.
PMID:30535029
Multi-level remodeling of transcriptional landscapes in aging and longevity.
PMID:30526773
Deletion of the murine ortholog of the 8q24 gene desert has anti-cancer effects in transgenic mammary cancer models.
PMID:30526553
Sense of Smell: Structural, Functional, Mechanistic Advancements and Challenges in Human Olfactory Research.
PMID:30520376
DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal and Differentiation.
PMID:30518531
Genomic Takeover by Transposable Elements in the Strawberry Poison Frog.
PMID:30517748
Centromere-associated protein E expresses a novel mRNA isoform in acute lymphoblastic leukemia.
PMID:30515258
Tracking microRNA Processing Signals by Degradome Sequencing Data Analysis.
PMID:30487815
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.
PMID:30486838
Retrotransposon insertion as a novel mutational event in Bardet-Biedl syndrome.
PMID:30484961
Personal Genome Project UK (PGP-UK): a research and citizen science hybrid project in support of personalized medicine.
PMID:30482208
Next-Generation Sequencing Technologies.
PMID:30478097
Future Promises and Concerns of Ubiquitous Next-Generation Sequencing.
PMID:30478095
Deep repeat resolution-the assembly of the Drosophila Histone Complex.
PMID:30476267
Amphioxus functional genomics and the origins of vertebrate gene regulation.
PMID:30464347
The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018.
PMID:30460993
Research progresses in roles of LncRNA and its relationships with breast cancer.
PMID:30459529
Mendelian Randomization Studies Promise to Shorten the Journey to FDA Approval.
PMID:30456340
Assembly of a pan-genome from deep sequencing of 910 humans of African descent.
PMID:30455414
ERVmap analysis reveals genome-wide transcription of human endogenous retroviruses.
PMID:30455304
Testing the retroelement invasion hypothesis for the emergence of the ancestral eukaryotic cell.
PMID:30455297
Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions.
PMID:30455182
MiteFinderII: a novel tool to identify miniature inverted-repeat transposable elements hidden in eukaryotic genomes.
PMID:30453969
PAVOOC: designing CRISPR sgRNAs using 3D protein structures and functional domain annotations.
PMID:30445568
Sendai Virus Infection Induces Expression of Novel RNAs in Human Cells.
PMID:30429577
Exploring the Impact of Single-Nucleotide Polymorphisms on Translation.
PMID:30425729
One Major Challenge of Sequencing Large Plant Genomes Is to Know How Big They Really Are.
PMID:30423889
A fast adaptive algorithm for computing whole-genome homology maps.
PMID:30423094
Next-Generation Sequencing in Autism Spectrum Disorder.
PMID:30420340
Ethanol and a rapid-acting antidepressant produce overlapping changes in exon expression in the synaptic transcriptome.
PMID:30419244
Alu insertion variants alter mRNA splicing.
PMID:30418605
Conserved Pbp1/Ataxin-2 regulates retrotransposon activity and connects polyglutamine expansion-driven protein aggregation to lifespan-controlling rDNA repeats.
PMID:30417124
Roles of Smads Family and Alternative Splicing Variants of Smad4 in Different Cancers.
PMID:30410607
AFLP-AFLP in silico-NGS approach reveals polymorphisms in repetitive elements in the malignant genome.
PMID:30408048
Comparative genomics of the major parasitic worms.
PMID:30397333
High-complexity regions in mammalian genomes are enriched for developmental genes.
PMID:30395202
The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project.
PMID:30390178
The influence of Neanderthal alleles on cytotoxic response.
PMID:30386687
ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data.
PMID:30384854
LTRs activated by Epstein-Barr virus-induced transformation of B cells alter the transcriptome.
PMID:30381291
A large-scale analysis of bioinformatics code on GitHub.
PMID:30379882
QTL mapping of natural variation reveals that the developmental regulator bruno reduces tolerance to P-element transposition in the Drosophila female germline.
PMID:30376574
Impact of somatic and germline mutations on the outcome of systemic mastocytosis.
PMID:30373888
Regulation of DNA Double-Strand Break Repair by Non-Coding RNAs.
PMID:30373256
Identification of recurrent and novel mutations by whole‑genome sequencing of colorectal tumors from the Han population in Shanghai, eastern China.
PMID:30365144
Atypical Parkinsonism-Dystonia Syndrome Caused by a Novel DJ1 Mutation.
PMID:30363821
The Decrease in Human Endogenous Retrovirus-H Activity Runs in Parallel with Improvement in ADHD Symptoms in Patients Undergoing Methylphenidate Therapy.
PMID:30360480
Transposable Elements in the Organization and Diversification of the Genome of Aegilops speltoides Tausch (Poaceae, Triticeae).
PMID:30356408
LncRNA HOTAIR regulates lipopolysaccharide-induced cytokine expression and inflammatory response in macrophages.
PMID:30353135
A reference haplotype panel for genome-wide imputation of short tandem repeats.
PMID:30353011
Prolonged Idasanutlin (RG7388) Treatment Leads to the Generation of p53-Mutated Cells.
PMID:30352966
Targeted genotyping of variable number tandem repeats with adVNTR.
PMID:30352806
DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements.
PMID:30352618
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.
PMID:30352610
Antiviral resistance of stem cells.
PMID:30352329
Inhibition of LINE-1 Retrotransposition by Capsaicin.
PMID:30347711
De novo assembly of haplotype-resolved genomes with trio binning.
PMID:30346939
Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads.
PMID:30346553
Chromosome assembly of large and complex genomes using multiple references.
PMID:30341161
Special Issue Introduction: The Wonders and Mysteries Next Generation Sequencing Technologies Help Reveal.
PMID:30340386
A new approach based on targeted pooled DNA sequencing identifies novel mutations in patients with Inherited Retinal Dystrophies.
PMID:30337596
Human SETMAR is a DNA sequence-specific histone-methylase with a broad effect on the transcriptome.
PMID:30329085
Biased antagonism of CXCR4 avoids antagonist tolerance.
PMID:30327409
Next-Generation Sequencing Strategies.
PMID:30323017
Single-nucleotide variants in human RNA: RNA editing and beyond.
PMID:30312373
PTB/nPTB: master regulators of neuronal fate in mammals.
PMID:30310857
Colocalization analyses of genomic elements: approaches, recommendations and challenges.
PMID:30307532
De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data.
PMID:30304863
Rapid Expansion of a Highly Germline-Expressed Mariner Element Acquired by Horizontal Transfer in the Fire Ant Genome.
PMID:30304394
Crystallography and Its Impact on Carbonic Anhydrase Research.
PMID:30302289
Loss of pyruvate kinase M2 limits growth and triggers innate immune signaling in endothelial cells.
PMID:30301887
The placenta goes viral: Retroviruses control gene expression in pregnancy.
PMID:30300353
Combinatorial Approach for Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders.
PMID:30297454
Assessment of Resistance to Tyrosine Kinase Inhibitors by an Interrogation of Signal Transduction Pathways by Antibody Arrays.
PMID:30295648
ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching.
PMID:30295032
Multiple serine transposase dimers assemble the transposon-end synaptic complex during IS607-family transposition.
PMID:30289389
An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas.
PMID:30283979
Development of an AmpliSeqTM Panel for Next-Generation Sequencing of a Set of Genetic Predictors of Persisting Pain.
PMID:30283335
Functional intronic variant of SLC5A10 affects DRG2 expression and survival outcomes of early-stage non-small-cell lung cancer.
PMID:30281872
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.
PMID:30275530
NMD-degradome sequencing reveals ribosome-bound intermediates with 3'-end non-templated nucleotides.
PMID:30275517
PARP1 activation increases expression of modified tumor suppressors and pathways underlying development of aggressive hepatoblastoma.
PMID:30271949
Progress of analytical tools and techniques for human gut microbiome research.
PMID:30267313
Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000.
PMID:30265449
Genomics research in Africa and its impact on global health: insights from African researchers.
PMID:30263136
Multi-objective optimized genomic breeding strategies for sustainable food improvement.
PMID:30262841
Non-coding RNA in Ischemic and Non-ischemic Cardiomyopathy.
PMID:30259174
Epigenetic Effects of Drugs of Abuse.
PMID:30257440
Noncoding RNAs as therapeutic targets in early stage diabetic kidney disease.
PMID:30254844
Human Endogenous Retroviruses Are Ancient Acquired Elements Still Shaping Innate Immune Responses.
PMID:30250470
Data-Driven Exploration of Selectivity and Off-Target Activities of Designated Chemical Probes.
PMID:30249057
Personalised Medicine: The Odyssey from Hope to Practice.
PMID:30248964
Influenza Virus-Host Co-evolution. A Predator-Prey Relationship?
PMID:30245689
Genomic approaches for studying crop evolution.
PMID:30241487
Prolonged DNA hydrolysis in water: A study on DNA stability.
PMID:30238033
A Global Overview of Precision Medicine in Type 2 Diabetes.
PMID:30237159
Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance.
PMID:30236109
Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.
PMID:30227846
Genomics, bio specimens, and other biological data: Current status and future directions.
PMID:30226926
Association between Polymorphisms of Antioxidant Gene (MnSOD, CAT, and GPx1) and Risk of Coronary Artery Disease.
PMID:30225256
Reviving a 60 million year old LINE-1 element.
PMID:30221208
Repeat-associated non-ATG (RAN) translation.
PMID:30213863
Functional Evolution of Avian RIG-I-Like Receptors.
PMID:30213147
Somatic Mutagenesis in Mammals and Its Implications for Human Disease and Aging.
PMID:30212236
Impacts of bisphenol A (BPA) and phthalate exposures on epigenetic outcomes in the human placenta.
PMID:30210810
Whole genome sequencing data for two individuals of Pakistani descent.
PMID:30204152
Finding Nemo's Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula.
PMID:30203521
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms.
PMID:30202060
Transposons, p53 and Genome Security.
PMID:30195581
Early Behavioral Alterations and Increased Expression of Endogenous Retroviruses Are Inherited Across Generations in Mice Prenatally Exposed to Valproic Acid.
PMID:30194517
Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.
PMID:30189101
Genomes for all.
PMID:30188541
Non-coding RNAs in retinal development and function.
PMID:30187163
Pairs of Adjacent Conserved Noncoding Elements Separated by Conserved Genomic Distances Act as Cis-Regulatory Units.
PMID:30184074
Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata.
PMID:30184067
From Molecules to Mechanisms: Functional Proteomics and Its Application to Renal Tubule Physiology.
PMID:30182799
What Are 3' UTRs Doing?
PMID:30181377
The Xenopus animal cap transcriptome: building a mucociliary epithelium.
PMID:30165493
Molecular functions and specific roles of circRNAs in the cardiovascular system.
PMID:30159442
Circular RNAs in the cardiovascular system.
PMID:30159434
Non-coding RNAs in skeletal muscle regeneration.
PMID:30159421
MinION rapid sequencing: Review of potential applications in neurosurgery.
PMID:30159201
Alternative splicing of the Caenorhabditis elegans lev-11 tropomyosin gene is regulated in a tissue-specific manner.
PMID:30155988
Biophysical and structural characterization of the thermostable WD40 domain of a prokaryotic protein, Thermomonospora curvata PkwA.
PMID:30154510
Nomenclature for endogenous retrovirus (ERV) loci.
PMID:30153831
The Gut Microbiome in Adult and Pediatric Functional Gastrointestinal Disorders.
PMID:30153517
Nucleic Acid-Barcoding Technologies: Converting DNA Sequencing into a Broad-Spectrum Molecular Counter.
PMID:30153374
Transposable element dysregulation in systemic lupus erythematosus and regulation by histone conformation and Hsp90.
PMID:30149120
Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans.
PMID:30147753
Bioinformatic and biological avenues for understanding alcohol use disorder.
PMID:30144960
Endogenous retrovirus expression is associated with response to immune checkpoint blockade in clear cell renal cell carcinoma.
PMID:30135306
The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium.
PMID:30133459
Transcriptome-wide analysis uncovers the targets of the RNA-binding protein MSI2 and effects of MSI2's RNA-binding activity on IL-6 signaling.
PMID:30126842
Association of Bisphenol A Exposure with LINE-1 Hydroxymethylation in Human Semen.
PMID:30126118
Open questions: How many genes do we have?
PMID:30124169
Practical guidelines for rigor and reproducibility in preclinical and clinical studies on cardioprotection.
PMID:30120595
Cross-disciplinary evolution of the genomics revolution.
PMID:30116784
Application of genome analysis strategies in the clinical testing for pediatric diseases.
PMID:30112248
Discovery of 7-hydroxyaporphines as conformationally restricted ligands for beta-1 and beta-2 adrenergic receptors.
PMID:30108929
Proteomics: Clinical and research applications in respiratory diseases.
PMID:30105802
A piRNA utilizes HILI and HIWI2 mediated pathway to down-regulate ferritin heavy chain 1 mRNA in human somatic cells.
PMID:30102404
[The Use Of Pulmonary Gene Therapy In The Treatment Of Experimental Models Of Pneumonia And Septicemia].
PMID:30100668
Delineating inflammatory bowel disease through transcriptomic studies: current review of progress and evidence.
PMID:30090036
Somatic mutations in the human brain: implications for psychiatric research.
PMID:30087451
The age-regulated zinc finger factor ZNF367 is a new modulator of neuroblast proliferation during embryonic neurogenesis.
PMID:30087422
Gene editing in the context of an increasingly complex genome.
PMID:30086710
LINE- and Alu-containing genomic instability hotspot at 16q24.1 associated with recurrent and nonrecurrent CNV deletions causative for ACDMPV.
PMID:30084155
Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion.
PMID:30082403
Reconstruction of the cell entry pathway of an extinct virus.
PMID:30080900
Alcohol Metabolizing Polygenic Risk for Alcohol Consumption in European American College Students.
PMID:30079879
Trends to store digital data in DNA: an overview.
PMID:30073589
Related Endogenous Retrovirus-K Elements Harbor Distinct Protease Active Site Motifs.
PMID:30072963
De novo human genome assemblies reveal spectrum of alternative haplotypes in diverse populations.
PMID:30072691
Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation.
PMID:30070637
Microsatellite enhancers can be targeted to impair tumorigenesis.
PMID:30068701
KAP1 regulates endogenous retroviruses in adult human cells and contributes to innate immune control.
PMID:30061100
TIP60 represses activation of endogenous retroviral elements.
PMID:30053221
Mobile elements contribute to the uniqueness of human genome with 15,000 human-specific insertions and 14 Mbp sequence increase.
PMID:30052927
Epigenome editing of microsatellite repeats defines tumor-specific enhancer functions and dependencies.
PMID:30042132
[Genetics in medicine].
PMID:30039391
Ras Suppresses TXNIP Expression by Restricting Ribosome Translocation.
PMID:30037981
Non-Coding RNAs in Endometrial Physiopathology.
PMID:30037059
Cellular Genomic Sites of Hepatitis B Virus DNA Integration.
PMID:30037029
Investigation of epigenetic regulatory networks associated with autism spectrum disorder (ASD) by integrated global LINE-1 methylation and gene expression profiling analyses.
PMID:30036398
Characterization of Glycoproteins with the Immunoglobulin Fold by X-Ray Crystallography and Biophysical Techniques.
PMID:30035760
CRISPR-based reagents to study the influence of the epigenome on gene expression.
PMID:30030848
The genomics of insecticide resistance: insights from recent studies in African malaria vectors.
PMID:30025626
Noninvasive cancer biomarkers in solid malignancies: circulating tumor DNA-clinical utility, current limitations and future perspectives.
PMID:30023396
Retrotransposon-induced mosaicism in the neural genome.
PMID:30021882
Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing.
PMID:30018084
GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing.
PMID:30012093
Molecular biology as a tool for the treatment of cancer.
PMID:30006681
Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes.
PMID:30005633
Comparative genomic analysis of eutherian adiponectin genes.
PMID:30003153
L1 retrotransposition in the soma: a field jumping ahead.
PMID:30002735
HIV infection results in clonal expansions containing integrations within pathogenesis-related biological pathways.
PMID:29997284
Germline DNA replication timing shapes mammalian genome composition.
PMID:29986092
Gene-by-Gene or Localized Dosage Compensation on the Neo-X Chromosome in Drosophila miranda.
PMID:29986000
Tetz's theory and law of longevity.
PMID:29978435
Machine Learning and Radiogenomics: Lessons Learned and Future Directions.
PMID:29977864
LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs.
PMID:29976163
Reappraisal of Reported Genes for Sudden Arrhythmic Death: Evidence-Based Evaluation of Gene Validity for Brugada Syndrome.
PMID:29959160
G protein-coupled receptors: the evolution of structural insight.
PMID:29951585
Haplotype phasing in single-cell DNA-sequencing data.
PMID:29950014
Platforms for Investigating LncRNA Functions.
PMID:29945466
Ethics and Quality Assessment in Genetic Testing.
PMID:29942241
Towards Automation for Molecular Diagnosis of Cancer.
PMID:29942240
Engrailed homeoprotein blocks degeneration in adult dopaminergic neurons through LINE-1 repression.
PMID:29941661
Multigenome analysis implicates miniature inverted-repeat transposable elements (MITEs) in metabolic diversification in eudicots.
PMID:29941591
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.
PMID:29937276
Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data.
PMID:29936186
Identification of transposable elements fused in the exonic region of the olive flounder genome.
PMID:29934806
Transverse cardiac slicing and optical imaging for analysis of transmural gradients in membrane potential and Ca2+ transients in murine heart.
PMID:29928770
MALAT1: A long non-coding RNA highly associated with human cancers.
PMID:29928382
Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly.
PMID:29925783
A machine-learned analysis of human gene polymorphisms modulating persisting pain points to major roles of neuroimmune processes.
PMID:29923268
Horizontally transferred genes in the ctenophore Mnemiopsis leidyi.
PMID:29922518
RNA Degradation in Neurodegenerative Disease.
PMID:29916018
Motifome comparison between modern human, Neanderthal and Denisovan.
PMID:29914355
Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements.
PMID:29907612
Clinical validation of the Tempus xO assay.
PMID:29899824
Human Genetics of Obesity and Type 2 Diabetes Mellitus: Past, Present, and Future.
PMID:29899044
ALUminating the Path of Atherosclerosis Progression: Chaos Theory Suggests a Role for Alu Repeats in the Development of Atherosclerotic Vascular Disease.
PMID:29895733
Genetic Diversity in the UV Sex Chromosomes of the Brown Alga Ectocarpus.
PMID:29882839
Genetic testing and autism: Tutorial for communication sciences and disorders.
PMID:29879582
Cancer epigenetics: Moving forward.
PMID:29879107
RNA Editing and Retrotransposons in Neurology.
PMID:29875629
Precision cancer therapy is impacted by oncogene-dependent epigenome remodeling.
PMID:29872691
DACCOR-Detection, characterization, and reconstruction of repetitive regions in bacterial genomes.
PMID:29868249
Long Non-coding RNAs in Endothelial Biology.
PMID:29867565
Evolutionary divergence of 3' UTRs in cichlid fishes.
PMID:29866078
Evolution, kidney development, and chronic kidney disease.
PMID:29857053
Mining the literature for genes associated with placenta-mediated maternal diseases.
PMID:29854219
Counteraction of Oxidative Stress by Vitamin E Affects Epigenetic Regulation by Increasing Global Methylation and Gene Expression of MLH1 and DNMT1 Dose Dependently in Caco-2 Cells.
PMID:29854080
The Physical and Biochemical Properties of the Extracellular Matrix Regulate Cell Fate.
PMID:29853174
Landscape of Microsatellite Instability Across 39 Cancer Types.
PMID:29850653
Whole-Genome Sequencing in Cancer.
PMID:29844223
Long-Distance Relationships: Suppression of Repeat-Mediated Deletions.
PMID:29804746
Mining of potential drug targets through the identification of essential and analogous enzymes in the genomes of pathogens of Glycine max, Zea mays and Solanum lycopersicum.
PMID:29799863
Prenatal Perfluorooctyl Sulfonate Exposure and Alu DNA Hypomethylation in Cord Blood.
PMID:29795014
Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics.
PMID:29794536
Getting up close and personal with UK genomics and beyond.
PMID:29793512
Mutalisk: a web-based somatic MUTation AnaLyIS toolKit for genomic, transcriptional and epigenomic signatures.
PMID:29790943
PUF60-activated exons uncover altered 3' splice-site selection by germline missense mutations in a single RRM.
PMID:29788428
ZNF418 overexpression protects against gastric carcinoma and prompts a good prognosis.
PMID:29785125
All I's on the RADAR: role of ADAR in gene regulation.
PMID:29770436
A Next-Generation Sequencing Primer-How Does It Work and What Can It Do?
PMID:29761157
Selective modulation of local linkages between active transcription and oxidative demethylation activity shapes cardiomyocyte-specific gene-body epigenetic status in mice.
PMID:29747586
Transactivation of human endogenous retrovirus K (HERV-K) by KSHV promotes Kaposi's sarcoma development.
PMID:29743595
Osmotic modulation of chromatin impacts on efficiency and kinetics of cell fate modulation.
PMID:29740078
A deeper view into the significance of simple sequence repeats in pre-miRNAs provides clues for its possible roles in determining the function of microRNAs.
PMID:29739315
Detection and analysis of ancient segmental duplications in mammalian genomes.
PMID:29735604
Towards a map of cis-regulatory sequences in the human genome.
PMID:29733395
Copy Number Variation Disorders.
PMID:29732242
Genome Editing Redefines Precision Medicine in the Cardiovascular Field.
PMID:29731778
Targeting RNA in mammalian systems with small molecules.
PMID:29726113
Reconstruction of a replication-competent ancestral murine endogenous retrovirus-L.
PMID:29716624
Heritable L1 Retrotransposition Events During Development: Understanding Their Origins: Examination of heritable, endogenous L1 retrotransposition in mice opens up exciting new questions and research directions.
PMID:29709066
Predicting gene structure changes resulting from genetic variants via exon definition features.
PMID:29701825
Nuclear Signaling of Plant MAPKs.
PMID:29696029
Prostate Cancer Genomics: Recent Advances and the Prevailing Underrepresentation from Racial and Ethnic Minorities.
PMID:29690565
Differential Effect of Selection against LINE Retrotransposons among Vertebrates Inferred from Whole-Genome Data and Demographic Modeling.
PMID:29688421
Effective discovery of rare variants by pooled target capture sequencing: A comparative analysis with individually indexed target capture sequencing.
PMID:29677560
Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.
PMID:29677183
Cell type transcriptome atlas for the planarian Schmidtea mediterranea.
PMID:29674431
Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila.
PMID:29669801
Melanoma: What do all the mutations mean?
PMID:29663336
Rare Splice Variants in Long Non-Coding RNAs.
PMID:29657294
Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.
PMID:29648536
Identification and characterization of short tandem repeats in the Tibetan macaque genome based on resequencing data.
PMID:29643326
L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis.
PMID:29643204
Tracking the Continuous Evolutionary Processes of an Endogenous Retrovirus of the Domestic Cat: ERV-DC.
PMID:29642384
Genotype imputation performance of three reference panels using African ancestry individuals.
PMID:29637265
Repeat-mediated deletions can be induced by a chromosomal break far from a repeat, but multiple pathways suppress such rearrangements.
PMID:29636371
DNA methylation profiles correlated to striped bass sperm fertility.
PMID:29636007
Targeting IS608 transposon integration to highly specific sequences by structure-based transposon engineering.
PMID:29635476
Reactivation of endogenous retroviral elements via treatment with DNMT- and HDAC-inhibitors.
PMID:29633898
A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms.
PMID:29632618
Relationship between Long Interspersed Nuclear Element-1 DNA Methylation in Leukocytes and Dyslipidemia in the Japanese General Population.
PMID:29628482
A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.
PMID:29618024
An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics.
PMID:29617896
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data.
PMID:29617727
The SAMHD1-mediated block of LINE-1 retroelements is regulated by phosphorylation.
PMID:29610582
From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond.
PMID:29600857
Protein-nucleic acid interactions of LINE-1 ORF1p.
PMID:29596909
HERV Envelope Proteins: Physiological Role and Pathogenic Potential in Cancer and Autoimmunity.
PMID:29593697
The influence of transcript assembly on the proteogenomics discovery of microproteins.
PMID:29584760
HnRNP L represses cryptic exons.
PMID:29581412
Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates.
PMID:29580552
Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations.
PMID:29576615
In silico analysis of endogenous siRNAs associated transposable elements and NATs in Schistosoma japonicum reveals their putative roles during reproductive development.
PMID:29568977
Human LINE-1 retrotransposition requires a metastable coiled coil and a positively charged N-terminus in L1ORF1p.
PMID:29565245
iPS Cells-The Triumphs and Tribulations.
PMID:29563461
Multispecies reconstructions uncover widespread conservation, and lineage-specific elaborations in eukaryotic mRNA metabolism.
PMID:29561870
Identification of sex-specific DNA methylation changes driven by specific chemicals in cord blood in a Faroese birth cohort.
PMID:29560787
The Ever-Evolving Concept of the Gene: The Use of RNA/Protein Experimental Techniques to Understand Genome Functions.
PMID:29560353
Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis.
PMID:29560044
Precision oncology in advanced cancer patients improves overall survival with lower weekly healthcare costs.
PMID:29552312
Nimbus: a design-driven analyses suite for amplicon-based NGS data.
PMID:29538618
Transcriptional landscape of human endogenous retroviruses (HERVs) and other repetitive elements in psoriatic skin.
PMID:29531256
Global analysis of A-to-I RNA editing reveals association with common disease variants.
PMID:29527417
Investigation of Endogenous Retrovirus Sequences in the Neighborhood of Genes Up-regulated in a Neuroblastoma Model after Treatment with Hypoxia-Mimetic Cobalt Chloride.
PMID:29515560
Human Endogenous Retroviruses and Their Putative Role in the Development of Autoimmune Disorders Such as Multiple Sclerosis.
PMID:29515547
Spliced integrated retrotransposed element (SpIRE) formation in the human genome.
PMID:29505568
Reading the tea leaves: Dead transposon copies reveal novel host and transposon biology.
PMID:29505560
LINE-1 ORF1 Protein Is Up-regulated by Reactive Oxygen Species and Associated with Bladder Urothelial Carcinoma Progression.
PMID:29496693
DNA methylation in the pathogenesis of type 2 diabetes in humans.
PMID:29496428
Elevated HERV-K Expression in Soft Tissue Sarcoma Is Associated with Worsened Relapse-Free Survival.
PMID:29487589
High-Throughput Methods to Detect Long Non-Coding RNAs.
PMID:29485610
Agonistic Autoantibodies to the β2-Adrenergic Receptor Involved in the Pathogenesis of Open-Angle Glaucoma.
PMID:29483909
Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells.
PMID:29482634
Genetic instability associated with loop or stem-loop structures within transcription units can be independent of nucleotide excision repair.
PMID:29474673
Introduction to mammalian genome special issue: the combined role of genetics and environment relevant to human disease outcomes.
PMID:29460122
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.
PMID:29447159
Glia maturation factor-β: a potential therapeutic target in neurodegeneration and neuroinflammation.
PMID:29445286
Mutation in an alternative transcript of CDKL5 in a boy with early-onset seizures.
PMID:29444904
Evolution of neuropeptide signalling systems.
PMID:29440283
Alternative Splicing as a Target for Cancer Treatment.
PMID:29439487
Toward a Tiered Model to Share Clinical Trial Data and Samples in Precision Oncology.
PMID:29435448
Treatment with 5-azacitidine delay growth of glioblastoma xenografts: a potential new treatment approach for glioblastomas.
PMID:29427211
OVAS: an open-source variant analysis suite with inheritance modelling.
PMID:29422027
Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.
PMID:29398526
Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases.
PMID:29396793
Mammalian transposable elements and their impacts on genome evolution.
PMID:29392473
A high throughput screen for active human transposable elements.
PMID:29390960
Transcriptome-wide identification of the RNA-binding landscape of the chromatin-associated protein PARP1 reveals functions in RNA biogenesis.
PMID:29387452
Co(II) Coordination in Prokaryotic Zinc Finger Domains as Revealed by UV-Vis Spectroscopy.
PMID:29386985
Liver X Receptor-Binding DNA Motif Associated With Atherosclerosis-Specific DNA Methylation Profiles of Alu Elements and Neighboring CpG Islands.
PMID:29386205
Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA.
PMID:29385572
Serum DNA integrity index as a potential molecular biomarker in endometrial cancer.
PMID:29382392
Rheumatoid arthritis patient antibodies highly recognize IL-2 in the immune response pathway involving IRF5 and EBV antigens.
PMID:29379122
Protecting and Diversifying the Germline.
PMID:29378808
Cognitive genomics: Searching for the genetic roots of neuropsychological functioning.
PMID:29376674
Intraspecific and intraorganismal copy number dynamics of retrotransposons and tandem repeat in Aegilops speltoides Tausch (Poaceae, Triticeae).
PMID:29374788
Patterns of variation in cis-regulatory regions: examining evidence of purifying selection.
PMID:29373957
Targeted deletion of a 170-kb cluster of LINE-1 repeats and implications for regional control.
PMID:29367313
Plasmodium parasites of birds have the most AT-rich genes of eukaryotes.
PMID:29360019
The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.
PMID:29358652
Reccurrent F8 Intronic Deletion Found in Mild Hemophilia A Causes Alu Exonization.
PMID:29357978
Beta and Gamma Human Herpesviruses: Agonistic and Antagonistic Interactions with the Host Immune System.
PMID:29354096
qPortal: A platform for data-driven biomedical research.
PMID:29352322
GenomeLandscaper: Landscape analysis of genome-fingerprints maps assessing chromosome architecture.
PMID:29348569
Natural antisense transcripts in diseases: From modes of action to targeted therapies.
PMID:29341438
Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
PMID:29335803
Transposable elements: genome innovation, chromosome diversity, and centromere conflict.
PMID:29332159
High expression of Endogenous Retroviruses from intrauterine life to adulthood in two mouse models of Autism Spectrum Disorders.
PMID:29330412
Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption.
PMID:29330329
Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons.
PMID:29328915
Whole-genome sequencing reveals principles of brain retrotransposition in neurodevelopmental disorders.
PMID:29327725
Analysis of DNA modifications in aging research.
PMID:29327208
Dissection of Myogenic Differentiation Signatures in Chickens by RNA-Seq Analysis.
PMID:29324704
Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions.
PMID:29322920
Using Genome Sequence to Enable the Design of Medicines and Chemical Probes.
PMID:29322778
Structural and Evolutionary Relationships in the Giant Sex Chromosomes of Three Microtus Species.
PMID:29320452
Identification of Inherited Retinal Disease-Associated Genetic Variants in 11 Candidate Genes.
PMID:29320387
Interplay between RNASEH2 and MOV10 controls LINE-1 retrotransposition.
PMID:29315404
Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs.
PMID:29315213
The lncRNA-HOXA-AS2/EZH2/LSD1 oncogene complex promotes cell proliferation in pancreatic cancer.
PMID:29312501
Potential Links between Hepadnavirus and Bornavirus Sequences in the Host Genome and Cancer.
PMID:29312227
Physiological and Pathological Transcriptional Activation of Endogenous Retroelements Assessed by RNA-Sequencing of B Lymphocytes.
PMID:29312197
The Importance of ncRNAs as Epigenetic Mechanisms in Phenotypic Variation and Organic Evolution.
PMID:29312192
Novel Transcriptional Activity and Extensive Allelic Imbalance in the Human MHC Region.
PMID:29311362
LINE-1 protein localization and functional dynamics during the cell cycle.
PMID:29309036
Dissection of affinity captured LINE-1 macromolecular complexes.
PMID:29309035
Long interspersed nuclear element-1 expression and retrotransposition in prostate cancer cells.
PMID:29308092
Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids.
PMID:29301786
The effects of transcription and recombination on mutational dynamics of short tandem repeats.
PMID:29300948
The development and growth of EJHG 1995-2017.
PMID:29297878
Erythrogene: a database for in-depth analysis of the extensive variation in 36 blood group systems in the 1000 Genomes Project.
PMID:29296939
Alu element insertion in PKLR gene as a novel cause of pyruvate kinase deficiency in Middle Eastern patients.
PMID:29288557
Overexpressed HSF1 cancer signature genes cluster in human chromosome 8q.
PMID:29268782
From a retrovirus infection of mice to a long noncoding RNA that induces proto-oncogene transcription and oncogenesis via an epigenetic transcription switch.
PMID:29263895
Was the Watchmaker Blind? Or Was She One-Eyed?
PMID:29261138
Recognizing the SINEs of Infection: Regulation of Retrotransposon Expression and Modulation of Host Cell Processes.
PMID:29258254
De-novo emergence of SINE retroposons during the early evolution of passerine birds.
PMID:29255493
Single molecule sequencing of the M13 virus genome without amplification.
PMID:29253901
Analysis of the Expression of Repetitive DNA Elements in Osteosarcoma.
PMID:29250102
Size, Shape, and Sequence-Dependent Immunogenicity of RNA Nanoparticles.
PMID:29246318
LINE-1 retrotransposons in healthy and diseased human brain.
PMID:29239145
Circular RNAs: A novel type of non-coding RNA and their potential implications in antiviral immunity.
PMID:29230098
Disease onset in X-linked dystonia-parkinsonism correlates with expansion of a hexameric repeat within an SVA retrotransposon in TAF1.
PMID:29229810
Identification of differentially expressed genes, lncRNAs and miRNAs which are associated with tumor malignant phenotypes in hepatoblastoma patients.
PMID:29228631
Age-dependent changes in mean and variance of gene expression across tissues in a twin cohort.
PMID:29228364
Patient Engagement in Kidney Research: Opportunities and Challenges Ahead.
PMID:29225906
Transcription coupled repair and biased insertion of human retrotransposon L1 in transcribed genes.
PMID:29225704
Diagnostic and prognostic tests in systemic lupus erythematosus.
PMID:29224677
Integrating 5hmC and gene expression data to infer regulatory mechanisms.
PMID:29220513
Computational identification of harmful mutation regions to the activity of transposable elements.
PMID:29219079
Lessons from the Human Genome Project: Modesty, Honesty, and Realism.
PMID:29218057
Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
PMID:29211708
Living Organisms Author Their Read-Write Genomes in Evolution.
PMID:29211049
Whole-exome sequencing of sickle cell disease patients with hyperhemolysis syndrome suggests a role for rare variation in disease predisposition.
PMID:29210071
Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re-Visiting the "Gene-Battery" Model.
PMID:29206283
Detection of the LINE-1 retrotransposon RNA-binding protein ORF1p in different anatomical regions of the human brain.
PMID:29201157
The rise of the genome and personalised medicine.
PMID:29196356
Decontaminating eukaryotic genome assemblies with machine learning.
PMID:29191179
A Multilayered Control of the Human Survival Motor Neuron Gene Expression by Alu Elements.
PMID:29187847
Genomic copy number variation analysis in multiple system atrophy.
PMID:29187220
Functional horizontal gene transfer from bacteria to eukaryotes.
PMID:29176581
Catching hidden variation: systematic correction of reference minor allele annotation in clinical variant calling.
PMID:29155419
Molecular Crosstalking among Noncoding RNAs: A New Network Layer of Genome Regulation in Cancer.
PMID:29147648
The Epstein-Barr Virus Episome Maneuvers between Nuclear Chromatin Compartments during Reactivation.
PMID:29142137
DNA damage responses and p53 in the aging process.
PMID:29141944
The European Nucleotide Archive in 2017.
PMID:29140475
Genomic structural variations lead to dysregulation of important coding and non-coding RNA species in dilated cardiomyopathy.
PMID:29138229
Optimized approach for the identification of highly efficient correctors of nonsense mutations in human diseases.
PMID:29131862
Improving virtual screening of G protein-coupled receptors via ligand-directed modeling.
PMID:29131821
Significance of functional disease-causal/susceptible variants identified by whole-genome analyses for the understanding of human diseases.
PMID:29129848
Neurobiology: A genetic cause of age-related decline.
PMID:29120415
Alternative splicing regulation in tumor necrosis factor-mediated inflammation.
PMID:29113151
Detection of subclonal L1 transductions in colorectal cancer by long-distance inverse-PCR and Nanopore sequencing.
PMID:29109480
The first draft reference genome of the American mink (Neovison vison).
PMID:29109430
Coevolution between transposable elements and recombination.
PMID:29109221
RNA versatility, flexibility, and thermostability for practice in RNA nanotechnology and biomedical applications.
PMID:29105333
A Role for the Mutagenic DNA Self-Catalyzed Depurination Mechanism in the Evolution of 7SL-Derived RNAs.
PMID:29103173
An endosiRNA-Based Repression Mechanism Counteracts Transposon Activation during Global DNA Demethylation in Embryonic Stem Cells.
PMID:29100015
Can Probiotic Supplements Improve Outcomes in Rheumatoid Arthritis?
PMID:29094223
A Never Ending Story..
PMID:29090025
The shortening of leukocyte telomere length relates to DNA hypermethylation of LINE-1 in type 2 diabetes mellitus.
PMID:29088760
Haplotype-specific MAPT exon 3 expression regulated by common intronic polymorphisms associated with Parkinsonian disorders.
PMID:29084565
Methylation of ZNF331 is an independent prognostic marker of colorectal cancer and promotes colorectal cancer growth.
PMID:29075358
BBMerge - Accurate paired shotgun read merging via overlap.
PMID:29073143
Molecular determinants of beta-adrenergic signaling to voltage-gated K+ channels in the cerebral circulation.
PMID:29072364
Epigenetics and precision medicine in cardiovascular patients: from basic concepts to the clinical arena.
PMID:29069341
Pivotal Impacts of Retrotransposon Based Invasive RNAs on Evolution.
PMID:29067016
A Review of Recent Advances in Translational Bioinformatics: Bridges from Biology to Medicine.
PMID:29063562
The emerging roles of NGS-based liquid biopsy in non-small cell lung cancer.
PMID:29061113
Genome-wide association study reveals genetic loci and candidate genes for average daily gain in Duroc pigs.
PMID:29059722
PopHuman: the human population genomics browser.
PMID:29059408
Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues.
PMID:29058714
[Big Data Revolution or Data Hubris? : On the Data Positivism of Molecular Biology].
PMID:29058018
DNA methylation and hydroxymethylation analyses of the active LINE-1 subfamilies in mice.
PMID:29051587
Precision medicine for all? Challenges and opportunities for a precision medicine approach to critical illness.
PMID:29047353
The role of gene variants in the pathogenesis of neurodegenerative disorders as revealed by next generation sequencing studies: a review.
PMID:29046784
HIV-1 Infection of Primary CD4+ T Cells Regulates the Expression of Specific Human Endogenous Retrovirus HERV-K (HML-2) Elements.
PMID:29046457
Ribosome Biogenesis Modulates Ty1 Copy Number Control in Saccharomyces cerevisiae.
PMID:29046400
The Antibody Repertoire of Colorectal Cancer.
PMID:29046389
Integrating networks and comparative genomics reveals retroelement proliferation dynamics in hominid genomes.
PMID:29043294
A plasma proteomics method reveals links between ischemic stroke and MTHFR C677T genotype.
PMID:29042595
Human Genome Sequencing at the Population Scale: A Primer on High-Throughput DNA Sequencing and Analysis.
PMID:29040395
Highly sensitive and specific Alu-based quantification of human cells among rodent cells.
PMID:29038571
Striking a balance: regulation of transposable elements by Zfp281 and Mll2 in mouse embryonic stem cells.
PMID:29036642
cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches.
PMID:29036576
HOXD-AS1 functions as an oncogenic ceRNA to promote NSCLC cell progression by sequestering miR-147a.
PMID:29033588
Emerging and evolving concepts in gene essentiality.
PMID:29033457
Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".
PMID:29029728
Condensin II and GAIT complexes cooperate to restrict LINE-1 retrotransposition in epithelial cells.
PMID:29028794
CRISPR/Cas9-mediated noncoding RNA editing in human cancers.
PMID:29028415
High-resolution mapping of the pericentromeric region on wheat chromosome arm 5AS harbouring the Fusarium head blight resistance QTL Qfhs.ifa-5A.
PMID:29024288
Adaptive self-organization in the embryo: its importance to adult anatomy and to tissue engineering.
PMID:29023694
Comprehensive benchmarking of SNV callers for highly admixed tumor data.
PMID:29020110
DNA sequencing at 40: past, present and future.
PMID:29019985
Differential gene regulatory networks in development and disease.
PMID:29018868
FACS-Assisted CRISPR-Cas9 Genome Editing Facilitates Parkinson's Disease Modeling.
PMID:28988985
STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data.
PMID:28984185
MicroRNA miR-128 represses LINE-1 (L1) retrotransposition by down-regulating the nuclear import factor TNPO1.
PMID:28974576
Human evolution: the non-coding revolution.
PMID:28969617
LINC00052 upregulates EPB41L3 to inhibit migration and invasion of hepatocellular carcinoma by binding miR-452-5p.
PMID:28969024
Clinical interpretation of copy number variants in the human genome.
PMID:28963714
Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.
PMID:28961772
Multiomics Approach to Asthma: Navigating the Network.
PMID:28960106
RNase H As Gene Modifier, Driver of Evolution and Antiviral Defense.
PMID:28959243
Functional Mechanisms of Microsatellite DNA in Eukaryotic Genomes.
PMID:28957459
Modeling GATAD1-Associated Dilated Cardiomyopathy in Adult Zebrafish.
PMID:28955713
Highly Variable Genomic Landscape of Endogenous Retroviruses in the C57BL/6J Inbred Strain, Depending on Individual Mouse, Gender, Organ Type, and Organ Location.
PMID:28951865
STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data.
PMID:28948042
Similar Evolutionary Trajectories for Retrotransposon Accumulation in Mammals.
PMID:28945883
Exosomal lncRNA GAS5 regulates the apoptosis of macrophages and vascular endothelial cells in atherosclerosis.
PMID:28945793
MicroRNAs in Heart Failure, Cardiac Transplantation, and Myocardial Recovery: Biomarkers with Therapeutic Potential.
PMID:28940102
Population-wide sampling of retrotransposon insertion polymorphisms using deep sequencing and efficient detection.
PMID:28938719
Host Noncoding Retrotransposons Induced by DNA Viruses: a SINE of Infection?
PMID:28931686
"Multi-Omics" Analyses of the Development and Function of Natural Killer Cells.
PMID:28928751
Satellite DNA: An Evolving Topic.
PMID:28926993
Elucidation of complexity and prediction of interactions in microbial communities.
PMID:28925555
Augmented expression of polo-like kinase 1 indicates poor clinical outcome for breast patients: a systematic review and meta-analysis.
PMID:28915707
Prediction of genome-wide DNA methylation in repetitive elements.
PMID:28911103
Distribution, Diversity, and Long-Term Retention of Grass Short Interspersed Nuclear Elements (SINEs).
PMID:28903462
Cell-free circulating DNA integrity is an independent predictor of impending breast cancer recurrence.
PMID:28903362
Alu-based cell-free DNA: a novel biomarker for screening of gastric cancer.
PMID:28903321
Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species.
PMID:28900618
Making a virtue of necessity: the pleiotropic role of human endogenous retroviruses in cancer.
PMID:28893944
Recent Advances in Experimental Whole Genome Haplotyping Methods.
PMID:28891974
Silencing of retrotransposons by SETDB1 inhibits the interferon response in acute myeloid leukemia.
PMID:28887438
Bias and Correction in RNA-seq Data for Marine Species.
PMID:28884399
Liquid biopsy in patients with hepatocellular carcinoma: Circulating tumor cells and cell-free nucleic acids.
PMID:28883691
Deamination-independent restriction of LINE-1 retrotransposition by APOBEC3H.
PMID:28883657
A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog.
PMID:28879061
Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding.
PMID:28877740
The Exposome: A New Frontier for Education.
PMID:28867821
Fifty years in human genetics--a career retrospective.
PMID:28860307
Identification of novel inhibitors against Cyclin Dependent Kinase 9/Cyclin T1 complex as: Anti cancer agent.
PMID:28855816
MSDB: A Comprehensive Database of Simple Sequence Repeats.
PMID:28854643
rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline.
PMID:28854222
RNA biology of disease-associated microsatellite repeat expansions.
PMID:28851463
The complexity of TRIM28 contribution to cancer.
PMID:28851455
Falling giants and the rise of gene editing: ethics, private interests and the public good.
PMID:28851444
Effect of health-belief-model-based training on performance of women in breast self-examination.
PMID:28848633
Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells.
PMID:28847161
Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips.
PMID:28842533
Evolution viewed from physics, physiology and medicine.
PMID:28839924
Biological action in Read-Write genome evolution.
PMID:28839913
A new role for FBP21 as regulator of Brr2 helicase activity.
PMID:28838205
Long noncoding RNAs coordinate functions between mitochondria and the nucleus.
PMID:28835257
Anti-HERV-K (HML-2) capsid antibody responses in HIV elite controllers.
PMID:28830571
Human Retrotransposon Insertion Polymorphisms Are Associated with Health and Disease via Gene Regulatory Phenotypes.
PMID:28824558
p53 binding sites in normal and cancer cells are characterized by distinct chromatin context.
PMID:28820292
Exploitation of Gene Expression and Cancer Biomarkers in Paving the Path to Era of Personalized Medicine.
PMID:28813639
The Retinoblastoma (RB) Tumor Suppressor: Pushing Back against Genome Instability on Multiple Fronts.
PMID:28812991
Discovery of Variants Underlying Host Susceptibility to Virus Infection Using Whole-Exome Sequencing.
PMID:28808973
A psychology of the human brain-gut-microbiome axis.
PMID:28804508
Silencing of Repetitive DNA Is Controlled by a Member of an Unusual Caenorhabditis elegans Gene Family.
PMID:28801529
Examining non-LTR retrotransposons in the context of the evolving primate brain.
PMID:28800766
Large Introns of 5 to 10 Kilo Base Pairs Can Be Spliced out in Arabidopsis.
PMID:28800125
Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.
PMID:28792005
Human genome-microbiome interaction: metagenomics frontiers for the aetiopathology of autoimmune diseases.
PMID:28785422
Genetically improved BarraCUDA.
PMID:28785314
"Squirrel" Primer-Based PCR Assay for Direct and Targeted Sanger Sequencing of Short Genomic Segments.
PMID:28785174
Presence of a Shared 5'-Leader Sequence in Ancestral Human and Mammalian Retroviruses and Its Transduction into Feline Leukemia Virus.
PMID:28768854
Impact of Alternative Splicing on the Human Proteome.
PMID:28768205
Novel copy number variation of POMGNT1 associated with muscle-eye-brain disease detected by next-generation sequencing.
PMID:28765568
Machine Learning-Assisted Network Inference Approach to Identify a New Class of Genes that Coordinate the Functionality of Cancer Networks.
PMID:28765560
Epigenetics of colorectal cancer: emerging circulating diagnostic and prognostic biomarkers.
PMID:28758105
Mobile DNA in Health and Disease.
PMID:28745987
Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity.
PMID:28743002
How should novelty be valued in science?
PMID:28742499
Resolving the prevalence of somatic transposition in Drosophila.
PMID:28742021
Dissecting evolution and disease using comparative vertebrate genomics.
PMID:28736437
ATM supports gammaherpesvirus replication by attenuating type I interferon pathway.
PMID:28732227
A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer.
PMID:28715472
Regulatory Roles of Long Non-Coding RNAs in the Central Nervous System and Associated Neurodegenerative Diseases.
PMID:28713244
Sensorimotor Learning: Neurocognitive Mechanisms and Individual Differences.
PMID:28705227
Genomic analysis of an infant with intractable diarrhea and dilated cardiomyopathy.
PMID:28701297
Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses.
PMID:28700586
Genetics and ALS: Cause for Optimism.
PMID:28698777
Medicine's movable feast: What jumping genes can teach us about treating disease.
PMID:28697180
Host genetic variation and HIV disease: from mapping to mechanism.
PMID:28695282
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics.
PMID:28691345
Materials Knowledge Systems in Python - A Data Science Framework for Accelerated Development of Hierarchical Materials.
PMID:28690971
LINE-1 hypomethylation is not a common event in preneoplastic stages of gastric carcinogenesis.
PMID:28684753
Interpreting whole genome and exome sequencing data of individual gastric cancer samples.
PMID:28683819
A Cell Fusion-Based Screening Method Identifies Glycosylphosphatidylinositol-Anchored Protein Ly6e as the Receptor for Mouse Endogenous Retroviral Envelope Syncytin-A.
PMID:28679758
Spectraplakin family proteins - cytoskeletal crosslinkers with versatile roles.
PMID:28679697
Modeling human disease in rodents by CRISPR/Cas9 genome editing.
PMID:28677007
The Exposome Paradigm in Human Health: Lessons from the Emory Exposome Summer Course.
PMID:28669935
LTRs of Endogenous Retroviruses as a Source of Tbx6 Binding Sites.
PMID:28664156
Landscape and variation of novel retroduplications in 26 human populations.
PMID:28662076
The Piwi-piRNA pathway: road to immortality.
PMID:28653810
Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
PMID:28650462
Transposable elements in cancer.
PMID:28642606
Managing the genomic revolution in cancer diagnostics.
PMID:28639053
Differential chromosomal organization between Saguinus midas and Saguinus bicolor with accumulation of differences the repetitive sequence DNA.
PMID:28634866
Increasing the reach of forensic genetics with massively parallel sequencing.
PMID:28631109
Molecular mechanisms of experience-dependent maturation in cortical GABAergic inhibition.
PMID:28628196
A water-soluble DsbB variant that catalyzes disulfide-bond formation in vivo.
PMID:28628094
Utilization of genomic sequencing for population screening of immunodeficiencies in the newborn.
PMID:28617419
Expression of HERV-K108 envelope interferes with HIV-1 production.
PMID:28605635
The Genomic Impact of Gene Retrocopies: What Have We Learned from Comparative Genomics, Population Genomics, and Transcriptomic Analyses?
PMID:28605529
DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats.
PMID:28604729
Primate-specific Long Non-coding RNAs and MicroRNAs.
PMID:28602844
Interplay between viruses and bacterial microbiota in cancer development.
PMID:28602713
Genome-wide mapping and characterization of microsatellites in the swamp eel genome.
PMID:28600492
Dissecting LSD1-Dependent Neuronal Maturation in the Olfactory Epithelium.
PMID:28597915
Reanalysis of BRCA1/2 negative high risk ovarian cancer patients reveals novel germline risk loci and insights into missing heritability.
PMID:28591191
A conserved role for the ESCRT membrane budding complex in LINE retrotransposition.
PMID:28586350
Large normal-range TBP and ATXN7 CAG repeat lengths are associated with increased lifetime risk of depression.
PMID:28585930
Analysis of LINE-1 Elements in DNA from Postmortem Brains of Individuals with Schizophrenia.
PMID:28585566
High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.
PMID:28581499
Transposable elements in Drosophila.
PMID:28580197
Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions.
PMID:28572566
The genetics revolution in rheumatology: large scale genomic arrays and genetic mapping.
PMID:28569263
Epigenetic Control of Human Endogenous Retrovirus Expression: Focus on Regulation of Long-Terminal Repeats (LTRs).
PMID:28561791
The Role of Somatic L1 Retrotransposition in Human Cancers.
PMID:28561751
Clinically Focused Molecular Investigation of 1000 Consecutive Families with Inherited Retinal Disease.
PMID:28559085
Genome annotation for clinical genomic diagnostics: strengths and weaknesses.
PMID:28558813
A birth of bipartite exon by intragenic deletion.
PMID:28546999
Refining the ideas of "ethnic" skin.
PMID:28538883
Methylation Levels of LINE-1 As a Useful Marker for Venous Invasion in Both FFPE and Frozen Tumor Tissues of Gastric Cancer.
PMID:28535662
Last rolls of the yoyo: Assessing the human canonical protein count.
PMID:28529709
L1 retrotransposition is activated by Ten-eleven-translocation protein 1 and repressed by methyl-CpG binding proteins.
PMID:28524723
Reading LINEs within the cocaine addicted brain.
PMID:28523221
Identification of human short introns.
PMID:28520720
DNA Sequence Analysis in Clinical Medicine, Proceeding Cautiously.
PMID:28516087
Robust long-read native DNA sequencing using the ONT CsgG Nanopore system.
PMID:28503666
Metazoan Ribosome Inactivating Protein encoding genes acquired by Horizontal Gene Transfer.
PMID:28500327
Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution.
PMID:28500258
Relationship between regulatory pattern of gene expression level and gene function.
PMID:28494005
Dynamic silencing of somatic L1 retrotransposon insertions reflects the developmental and cellular contexts of their genomic integration.
PMID:28491150
Evidence for transcriptome-wide RNA editing among Sus scrofa PRE-1 SINE elements.
PMID:28486975
Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species.
PMID:28486636
Horizontal gene transfer is not a hallmark of the human genome.
PMID:28482857
Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome.
PMID:28482049
Comparative transcriptomics in human and mouse.
PMID:28479595
Contrasting Sex-and Caste-Dependent piRNA Profiles in the Transposon Depleted Haplodiploid Honeybee Apis mellifera.
PMID:28472327
Reliability of algorithmic somatic copy number alteration detection from targeted capture data.
PMID:28472276
EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes.
PMID:28472109
Improving your four-dimensional image: traveling through a decade of light-sheet-based fluorescence microscopy research.
PMID:28471459
Structural variants caused by Alu insertions are associated with risks for many human diseases.
PMID:28465436
T-cell activation RhoGTPase-activating protein plays an important role in TH17-cell differentiation.
PMID:28462950
A novel MERTK mutation causing retinitis pigmentosa.
PMID:28462455
Epigenomic and transcriptomic approaches in the post-genomic era: path to novel targets for diagnosis and therapy of the ischaemic heart? Position Paper of the European Society of Cardiology Working Group on Cellular Biology of the Heart.
PMID:28460026
LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis.
PMID:28450881
Coronins and their role in immunological phenomena.
PMID:28450807
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
PMID:28448065
Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
PMID:28448031
Molecular mechanisms by which HERV-K Gag interferes with HIV-1 Gag assembly and particle infectivity.
PMID:28446240
Small RNA Pathways That Protect the Somatic Genome.
PMID:28445427
The evolution of neuropeptide signalling: insights from echinoderms.
PMID:28444138
Evolutionary history of the extant amphioxus lineage with shallow-branching diversification.
PMID:28442709
Implementing an Internet-Delivered Skin Cancer Genetic Testing Intervention to Improve Sun Protection Behavior in a Diverse Population: Protocol for a Randomized Controlled Trial.
PMID:28442450
Early vertebrate origin and diversification of small transmembrane regulators of cellular ion transport.
PMID:28436536
Truncated ORF1 proteins can suppress LINE-1 retrotransposition in trans.
PMID:28431148
Large-scale collection of full-length cDNA and transcriptome analysis in Hevea brasiliensis.
PMID:28431015
Global Fecal and Plasma Metabolic Dynamics Related to Helicobacter pylori Eradication.
PMID:28424674
Molecular genetics: Chaperone protein gets personal.
PMID:28424517
Identification and characterization of L1-specific endo-siRNAs essential for early embryonic development in pig.
PMID:28423565
Sharing Data to Build a Medical Information Commons: From Bermuda to the Global Alliance.
PMID:28415857
Selective elimination of long INterspersed element-1 expressing tumour cells by targeted expression of the HSV-TK suicide gene.
PMID:28415677
Long non-coding RNAs in cutaneous melanoma: clinical perspectives.
PMID:28415644
Repetitive DNA loci and their modulation by the non-canonical nucleic acid structures R-loops and G-quadruplexes.
PMID:28406751
Characterization of genome-wide segmental duplications reveals a common genomic feature of association with immunity among domestic animals.
PMID:28403820
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
PMID:28403240
Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors.
PMID:28397686
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.
PMID:28396521
Scaling by shrinking: empowering single-cell 'omics' with microfluidic devices.
PMID:28392571
A comprehensive hybridization model allows whole HERV transcriptome profiling using high density microarray.
PMID:28390408
DNA word analysis based on the distribution of the distances between symmetric words.
PMID:28389642
Monochromosomal Hybrids and Chromosome Transfer: A Functional Approach for Gene Identification.
PMID:28387649
Multi-scale chromatin state annotation using a hierarchical hidden Markov model.
PMID:28387224
Precision Cardiovascular Medicine: State of Genetic Testing.
PMID:28385198
Translation of Nutritional Genomics into Nutrition Practice: The Next Step.
PMID:28383492
Direct determination of diploid genome sequences.
PMID:28381613
Structural features embedded in G protein-coupled receptor co-crystal structures are key to their success in virtual screening.
PMID:28380046
Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes.
PMID:28379581
Widespread of horizontal gene transfer in the human genome.
PMID:28376762
Milestones in pathology-from histology to molecular biology.
PMID:28367253
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation.
PMID:28365736
Genome graphs and the evolution of genome inference.
PMID:28360232
The double-edged sword of (re)expression of genes by hypomethylating agents: from viral mimicry to exploitation as priming agents for targeted immune checkpoint modulation.
PMID:28359286
Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism.
PMID:28351387
Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics.
PMID:28348455
Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus.
PMID:28348391
INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes.
PMID:28344990
The feasibility of genome-scale biological network inference using Graphics Processing Units.
PMID:28344638
Variants in the host genome may inhibit tumour growth in devil facial tumours: evidence from genome-wide association.
PMID:28341828
Schizosaccharomyces pombe MutSα and MutLα Maintain Stability of Tetra-Nucleotide Repeats and Msh3 of Hepta-Nucleotide Repeats.
PMID:28341698
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.
PMID:28336562
DNA Sequencing Sensors: An Overview.
PMID:28335417
PML nuclear bodies contribute to the basal expression of the mTOR inhibitor DDIT4.
PMID:28332630
When Should Genetic Testing Be Performed in Epilepsy Patients?
PMID:28331464
Intragenic multi-exon deletion in the FBN1 gene in a child with mildly dilated aortic sinus: a retrotransposal event.
PMID:28331219
Gene-based genome-wide association study identified 19p13.3 for lean body mass.
PMID:28322352
Identification and Expression of Equine MER-Derived miRNAs.
PMID:28320202
From Sequence Data to Returnable Results: Ethical Issues in Variant Calling and Interpretation.
PMID:28306396
Y chromosome palindromes and gene conversion.
PMID:28303348
Editing the genome of hiPSC with CRISPR/Cas9: disease models.
PMID:28303292
Epigenetic and genetic alterations and their influence on gene regulation in chronic lymphocytic leukemia.
PMID:28302063
Decoupling of DNA methylation and activity of intergenic LINE-1 promoters in colorectal cancer.
PMID:28300471
ThermoAlign: a genome-aware primer design tool for tiled amplicon resequencing.
PMID:28300202
Functional interrogation of non-coding DNA through CRISPR genome editing.
PMID:28288828
Integration site selection by retroviruses and transposable elements in eukaryotes.
PMID:28286338
The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.
PMID:28284188
Molecular Tumor Boards: Ethical Issues in the New Era of Data Medicine.
PMID:28281147
Characterization of contiguous gene deletions in COL4A6 and COL4A5 in Alport syndrome-diffuse leiomyomatosis.
PMID:28275241
Non-coding RNA: It's Not Junk.
PMID:28271304
Precision medicine driven by cancer systems biology.
PMID:28265786
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.
PMID:28263316
Analytical Biases Associated with GC-Content in Molecular Evolution.
PMID:28261263
Extracellular vesicles as trans-genomic agents: Emerging roles in disease and evolution.
PMID:28256033
Genomic landscape of CpG rich elements in human.
PMID:28251877
Diversity in non-repetitive human sequences not found in the reference genome.
PMID:28250455
High-Throughput Proteomic Approaches to the Elucidation of Potential Biomarkers of Chronic Allograft Injury (CAI).
PMID:28250402
Protein-Protein Interactions: Gene Acronym Redundancies and Current Limitations Precluding Automated Data Integration.
PMID:28250396
The lncRNA XIST exhibits oncogenic properties via regulation of miR-449a and Bcl-2 in human non-small cell lung cancer.
PMID:28248928
Omics Approaches for the Study of Adaptive Immunity to Staphylococcus aureus and the Selection of Vaccine Candidates.
PMID:28248221
Conserved expression of transposon-derived non-coding transcripts in primate stem cells.
PMID:28245871
Targeting Splicing in the Treatment of Human Disease.
PMID:28245575
The Isochores as a Fundamental Level of Genome Structure and Organization: A General Overview.
PMID:28243687
Role of Protein Phosphatase 2A in Osteoblast Differentiation and Function.
PMID:28241467
GSA and BIGD: Filling the Gap of Bioinformatics Resource and Service in China<sup/>
PMID:28235641
Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation.
PMID:28233272
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.
PMID:28232478
Population and clinical genetics of human transposable elements in the (post) genomic era.
PMID:28228978
Comparative genomic analysis of eutherian kallikrein genes.
PMID:28224083
MicroRNAs in model and complex organisms.
PMID:28220336
Big Data Analytics for Genomic Medicine.
PMID:28212287
Alu-Derived Alternative Splicing Events Specific to Macaca Lineages in CTSF Gene.
PMID:28196413
Opportunities and challenges of whole-genome and -exome sequencing.
PMID:28193154
Lateral gene transfer between prokaryotes and eukaryotes.
PMID:28189637
The Human Long Interspersed Element-1 Retrotransposon: An Emerging Biomarker of Neoplasia.
PMID:28188229
An accurate and efficient method for large-scale SSR genotyping and applications.
PMID:28184437
Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity.
PMID:28178237
The Evolution of LINE-1 in Vertebrates.
PMID:28175298
Dicer, a new regulator of pluripotency exit and LINE-1 elements in mouse embryonic stem cells.
PMID:28174687
Hypermethylated LTR retrotransposon exhibits enhancer activity.
PMID:28165867
Genome-wide mining and comparative analysis of microsatellites in three macaque species.
PMID:28160080
Silencing of endogenous retroviruses by heterochromatin.
PMID:28160052
Evolution and Diversity of Transposable Elements in Vertebrate Genomes.
PMID:28158585
What's in a name? Context-dependent significance of 'global' methylation measures in human health and disease.
PMID:28149330
MISTIC-fusion proteins as antigens for high quality membrane protein antibodies.
PMID:28148968
Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide.
PMID:28145450
CRISPR applications in ophthalmologic genome surgery.
PMID:28141764
Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome.
PMID:28138342
Evolving health care through personal genomics.
PMID:28138143
Long non-coding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function.
PMID:28132025
Genetic Disorders of Dental Development: Tales from the Bony Crypt.
PMID:28124261
Lifestyle and precision diabetes medicine: will genomics help optimise the prediction, prevention and treatment of type 2 diabetes through lifestyle therapy?
PMID:28124081
Association of new deletion/duplication region at chromosome 1p21 with intellectual disability, severe speech deficit and autism spectrum disorder-like behavior: an all-in approach to solving the DPYD enigma.
PMID:28123791
How close are we to complete annotation of metabolomes?
PMID:28113135
Recent advances in understanding neuropathic pain: glia, sex differences, and epigenetics.
PMID:28105313
Concise Review: Induced Pluripotent Stem Cell Research in the Era of Precision Medicine.
PMID:28100040
Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer.
PMID:28096347
Cryptosporidium hominis gene catalog: a resource for the selection of novel Cryptosporidium vaccine candidates.
PMID:28095366
Paracoccidioides spp. catalases and their role in antioxidant defense against host defense responses.
PMID:28093309
GExplore 1.4: An expanded web interface for queries on Caenorhabditis elegans protein and gene function.
PMID:28090394
The future of transposable element annotation and their classification in the light of functional genomics - what we can learn from the fables of Jean de la Fontaine?
PMID:28090383
Transposable elements and circular DNAs.
PMID:28090380
Clinical and biological insights from viral genome sequencing.
PMID:28090077
Single genome retrieval of context-dependent variability in mutation rates for human germline.
PMID:28086752
Molecular Evolution of piggyBac Superfamily: From Selfishness to Domestication.
PMID:28082605
Computational Prediction of the Global Functional Genomic Landscape: Applications, Methods, and Challenges.
PMID:28076869
The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes.
PMID:28076790
Human Endogenous Retroviruses-K (HML-2) Expression Is Correlated with Prognosis and Progress of Hepatocellular Carcinoma.
PMID:28070518
Effects of Replication and Transcription on DNA Structure-Related Genetic Instability.
PMID:28067787
Genetic conflicts: the usual suspects and beyond.
PMID:28057823
Insertion Polymorphisms of Mobile Genetic Elements in Sexual and Asexual Populations of Daphnia pulex.
PMID:28057730
Exploring the Underlying Genetics of Craniofacial Morphology through Various Sources of Knowledge.
PMID:28053980
Short intron-derived ncRNAs.
PMID:28053119
The Nucleotide Excision Repair Pathway Limits L1 Retrotransposition.
PMID:28049704
Advancement of the Emerging Field of RNA Nanotechnology.
PMID:28045501
Tumor LINE-1 Methylation Level in Association with Survival of Patients with Stage II Colon Cancer.
PMID:28035987
Novel Role of 3'UTR-Embedded Alu Elements as Facilitators of Processed Pseudogene Genesis and Host Gene Capture by Viral Genomes.
PMID:28033411
Barriers to Infection of Human Cells by Feline Leukemia Virus: Insights into Resistance to Zoonosis.
PMID:28031367
GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics.
PMID:28025344
Combined microfluidic-optical DNA analysis with single-base-pair sizing capability.
PMID:28018736
Friend or Foe: Epigenetic Regulation of Retrotransposons in Mammalian Oogenesis and Early Development.
PMID:28018140
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.
PMID:28011790
EhNPC1 and EhNPC2 Proteins Participate in Trafficking of Exogenous Cholesterol in Entamoeba histolytica Trophozoites: Relevance for Phagocytosis.
PMID:28002502
The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells.
PMID:27999094
Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements.
PMID:27998931
Useful parasites: the evolutionary biology and biotechnology applications of transposable elements.
PMID:27994207
Perspectives on the history of evo-devo and the contemporary research landscape in the genomics era.
PMID:27994116
The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation.
PMID:27980690
Endogenous retroviral promoter exaptation in human cancer.
PMID:27980689
Performance evaluation for rapid detection of pan-cancer microsatellite instability with MANTIS.
PMID:27980218
Efficient Breeding by Genomic Mating.
PMID:27965707
Engineered LINE-1 retrotransposition in nondividing human neurons.
PMID:27965292
Alternate-locus aware variant calling in whole genome sequencing.
PMID:27964746
Prognostic and predictive significance of long interspersed nucleotide element-1 methylation in advanced-stage colorectal cancer.
PMID:27955637
Development of an in vitro human liver system for interrogating nonalcoholic steatohepatitis.
PMID:27942596
Incorporate gene signature profiling into routine molecular testing.
PMID:27942443
Tools for Sequence-Based miRNA Target Prediction: What to Choose?
PMID:27941681
High-Throughput Next-Generation Sequencing of Polioviruses.
PMID:27927929
L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes.
PMID:27924012
Pseudogenes and Their Genome-Wide Prediction in Plants.
PMID:27916797
Replication stalling and DNA microsatellite instability.
PMID:27914716
Molecular mechanism of hepatitis B virus (HBV) on suppression of raf kinase inhibitor protein (RKIP) expression.
PMID:27902472
Patterns of Transposable Element Expression and Insertion in Cancer.
PMID:27900322
The BIG Data Center: from deposition to integration to translation.
PMID:27899658
A comprehensive approach to expression of L1 loci.
PMID:27899577
Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda.
PMID:27897175
Blood-based DNA methylation as biomarker for breast cancer: a systematic review.
PMID:27895805
Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights.
PMID:27893794
An RB-EZH2 Complex Mediates Silencing of Repetitive DNA Sequences.
PMID:27889452
ProtLID, a Residue-Based Pharmacophore Approach to Identify Cognate Protein Ligands in the Immunoglobulin Superfamily.
PMID:27889206
An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes.
PMID:27882922
Phylogenetic Diversity of Koala Retrovirus within a Wild Koala Population.
PMID:27881645
Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide.
PMID:27876825
Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data.
PMID:27875984
The impact of transposable elements on mammalian development.
PMID:27875251
Expanding Diversity in Molecular Structures and Functions of the IL-6/IL-12 Heterodimeric Cytokine Family.
PMID:27867385
Regulatory activities of transposable elements: from conflicts to benefits.
PMID:27867194
From profiles to function in epigenomics.
PMID:27867193
Bringing It All Together: Coupling Excision Repair to the DNA Damage Checkpoint.
PMID:27861980
The Role of Next-Generation Sequencing in Enabling Personalized Oncology Therapy.
PMID:27860319
Gene Therapy for Metabolic Diseases.
PMID:27853673
Non-coding RNAs match the deleted genomic regions in humans.
PMID:27853310
CORALINA: a universal method for the generation of gRNA libraries for CRISPR-based screening.
PMID:27842490
False positives and false negatives measure less than 0.001% in labeling ssDNA with osmium tetroxide 2,2'-bipyridine.
PMID:27826518
Regulation of disease-associated gene expression in the 3D genome.
PMID:27826147
A Method for the Annotation of Functional Similarities of Coding DNA Sequences: the Case of a Populated Cluster of Transmembrane Proteins.
PMID:27812751
The PARA-suite: PAR-CLIP specific sequence read simulation and processing.
PMID:27812418
Identification of Binding Targets of a Pyrrole-Imidazole Polyamide KR12 in the LS180 Colorectal Cancer Genome.
PMID:27798693
Co-existence of BRAF and NRAS driver mutations in the same melanoma cells results in heterogeneity of targeted therapy resistance.
PMID:27791198
Genetics of rheumatoid arthritis: GWAS and beyond.
PMID:27790002
Computational pan-genomics: status, promises and challenges.
PMID:27769991
Sequencing and de novo assembly of the Asian gypsy moth transcriptome using the Illumina platform.
PMID:27768153
Cardiac disease and arrhythmogenesis: Mechanistic insights from mouse models.
PMID:27766308
A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule.
PMID:27751184
Epigenetic Aspects of Systemic Lupus Erythematosus.
PMID:27747498
SVA retrotransposons as potential modulators of neuropeptide gene expression.
PMID:27743609
Comparative Principles of DNA Methylation Reprogramming during Human and Mouse In Vitro Primordial Germ Cell Specification.
PMID:27728778
Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions.
PMID:27708261
Identification and Characterization of Small Noncoding RNAs in Genome Sequences of the Edible Fungus Pleurotus ostreatus.
PMID:27703969
OAHG: an integrated resource for annotating human genes with multi-level ontologies.
PMID:27703231
LINEs between Species: Evolutionary Dynamics of LINE-1 Retrotransposons across the Eukaryotic Tree of Life.
PMID:27702814
The Hoops, Hopes, and Hypes of Human Microbiome Research.
PMID:27698620
An Ecological Framework of the Human Virome Provides Classification of Current Knowledge and Identifies Areas of Forthcoming Discovery.
PMID:27698618
Rad51 and Rad54 promote noncrossover recombination between centromere repeats on the same chromatid to prevent isochromosome formation.
PMID:27697832
Elements in the Development of a Production Process for Modified Vaccinia Virus Ankara.
PMID:27694766
Impact of the Autism-Associated Long Noncoding RNA MSNP1AS on Neuronal Architecture and Gene Expression in Human Neural Progenitor Cells.
PMID:27690106
Laboratory Medicine in the Scope of Proteomics and Genomics.
PMID:27683374
Reconstructing Demography and Social Behavior During the Neolithic Expansion from Genomic Diversity Across Island Southeast Asia.
PMID:27683274
The possible roles of B-cell novel protein-1 (BCNP1) in cellular signalling pathways and in cancer.
PMID:27680505
Advances in diagnostics for transplant rejection.
PMID:27677432
Cervantes and Quijote protect heterochromatin from aberrant recombination and lead the way to the nuclear periphery.
PMID:27673416
Chocó, Colombia: a hotspot of human biodiversity.
PMID:27668076
Antisense Oligonucleotides Modulating Activation of a Nonsense-Mediated RNA Decay Switch Exon in the ATM Gene.
PMID:27658045
Endogenous retroviruses mobilized during friend murine leukemia virus infection.
PMID:27657834
Computational Evaluation of the Strict Master and Random Template Models of Endogenous Retrovirus Evolution.
PMID:27649303
Omics-Based Strategies in Precision Medicine: Toward a Paradigm Shift in Inborn Errors of Metabolism Investigations.
PMID:27649151
Oxford Nanopore MinION Sequencing and Genome Assembly.
PMID:27646134
Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos.
PMID:27639284
Annotating the Function of the Human Genome with Gene Ontology and Disease Ontology.
PMID:27635398
The Flow of the Gibbon LAVA Element Is Facilitated by the LINE-1 Retrotransposition Machinery.
PMID:27635049
Selection on Position of Nonsense Codons in Introns.
PMID:27630196
Identifying Nuclear Matrix-Attached DNA Across the Genome.
PMID:27627025
FBW7 suppression leads to SOX9 stabilization and increased malignancy in medulloblastoma.
PMID:27625374
Technological advances in precision medicine and drug development.
PMID:27622214
Great expectations - Epigenetics and the meandering path from bench to bedside.
PMID:27621117
The 2016 Lasker~Koshland Special Achievement Award recognizes Bruce Alberts' lifelong dedication to research, policy, and education.
PMID:27620537
De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin.
PMID:27618997
Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing.
PMID:27617755
Non-alcoholic fatty liver and the gut microbiota.
PMID:27617201
Contribution of type W human endogenous retroviruses to the human genome: characterization of HERV-W proviral insertions and processed pseudogenes.
PMID:27613107
Whole Genome Mapping with Feature Sets from High-Throughput Sequencing Data.
PMID:27611682
Human Contamination in Public Genome Assemblies.
PMID:27611326
Current Status of Long Non-Coding RNAs in Human Breast Cancer.
PMID:27608009
A Retrospective Analysis of Precision Medicine Outcomes in Patients With Advanced Cancer Reveals Improved Progression-Free Survival Without Increased Health Care Costs.
PMID:27601506
Silencing transposable elements in the Drosophila germline.
PMID:27600679
Strategies for Genomic and Proteomic Profiling of Cancers.
PMID:27594925
Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population.
PMID:27589963
The function of homeobox genes and lncRNAs in cancer.
PMID:27588114
ANGIOGENES: knowledge database for protein-coding and noncoding RNA genes in endothelial cells.
PMID:27582018
Identifying wrong assemblies in de novo short read primary sequence assembly contigs.
PMID:27581937
Role of pharmacogenetics in public health and clinical health care: a SWOT analysis.
PMID:27577547
Regulation of CTNNB1 signaling in gastric cancer and stem cells.
PMID:27574551
Circular RNAs: Unexpected outputs of many protein-coding genes.
PMID:27571848
The science commons in health research: structure, function, and value.
PMID:27570367
Tumor Touch Imprints as Source for Whole Genome Analysis of Neuroblastoma Tumors.
PMID:27560999
An Optimal Seed Based Compression Algorithm for DNA Sequences.
PMID:27555868
In silico identification of lysocin biosynthetic gene cluster from Lysobacter sp. RH2180-5.
PMID:27553855
A preliminary review of influential works in data-driven discovery.
PMID:27540499
Improving the Flexibility of RNA-Seq Data Analysis Pipelines.
PMID:27536420
The Astrobiology Primer v2.0.
PMID:27532777
Inference of Ancestral Recombination Graphs through Topological Data Analysis.
PMID:27532298
A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins.
PMID:27532255
Detection of cis- and trans-acting Factors in DNA Structure-Induced Genetic Instability Using In silico and Cellular Approaches.
PMID:27532010
Exploring cancer genomic data from the cancer genome atlas project.
PMID:27530686
The Ribonuclease A Superfamily in Humans: Canonical RNases as the Buttress of Innate Immunity.
PMID:27527162
Restricting retrotransposons: a review.
PMID:27525044
Benchmarking computational tools for polymorphic transposable element detection.
PMID:27524380
Structure and regulation of human troponin genes.
PMID:27520667
IRWRLDA: improved random walk with restart for lncRNA-disease association prediction.
PMID:27517318
Pharmacometabolomics informs Pharmacogenomics.
PMID:27516730
Prevalent Accumulation of Non-Optimal Codons through Somatic Mutations in Human Cancers.
PMID:27513638
Beyond Endometriosis Genome-Wide Association Study: From Genomics to Phenomics to the Patient.
PMID:27513026
Transposable elements and miRNA: Regulation of genomic stability and plasticity.
PMID:27511122
The transposable element environment of human genes is associated with histone and expression changes in cancer.
PMID:27506777
The Role of Retrotransposons in Gene Family Expansions in the Human and Mouse Genomes.
PMID:27503295
Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: a prospective nested case-control study.
PMID:27490804
Pinpointing the vesper bat transposon revolution using the Miniopterus natalensis genome.
PMID:27489570
Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences.
PMID:27488939
Imagining Sisyphus happy: DNA barcoding and the unnamed majority.
PMID:27481781
A novel human-specific splice isoform alters the critical C-terminus of Survival Motor Neuron protein.
PMID:27481219
Multiscale Modeling of Cellular Epigenetic States: Stochasticity in Molecular Networks, Chromatin Folding in Cell Nuclei, and Tissue Pattern Formation of Cells.
PMID:27480462
The bright side of dark matter: lncRNAs in cancer.
PMID:27479746
Evidence of selection for an accessible nucleosomal array in human.
PMID:27472913
In Vivo and In Vitro Genotoxic and Epigenetic Effects of Two Types of Cola Beverages and Caffeine: A Multiassay Approach.
PMID:27471731
Existence of Two Distinct Infectious Endogenous Retroviruses in Domestic Cats and Their Different Strategies for Adaptation to Transcriptional Regulation.
PMID:27466428
MR1 discovery.
PMID:27464703
A Canonical Correlation Analysis of AIDS Restriction Genes and Metabolic Pathways Identifies Purine Metabolism as a Key Cooperator.
PMID:27462363
Reprogramming, Circular Reasoning and Self versus Non-self: One-Stop Shopping with RNA Editing.
PMID:27458478
Tissue homogeneity requires inhibition of unequal gene silencing during development.
PMID:27458132
Aberrant DNA methylation reprogramming in bovine SCNT preimplantation embryos.
PMID:27456302
Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks.
PMID:27455841
Splicing variants of ADAR2 and ADAR2-mediated RNA editing in glioma.
PMID:27446352
Expression of evolutionarily novel genes in tumors.
PMID:27437030
Liquid biopsy in patients with pancreatic cancer: Circulating tumor cells and cell-free nucleic acids.
PMID:27433079
Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs.
PMID:27431325
LncRNAs in pancreatic cancer.
PMID:27429196
APOBEC3DE Inhibits LINE-1 Retrotransposition by Interacting with ORF1p and Influencing LINE Reverse Transcriptase Activity.
PMID:27428332
On the pathogenesis of insulin-dependent diabetes mellitus: the role of microbiota.
PMID:27421719
Zinc finger proteins in cancer progression.
PMID:27411336
Transfer of DNA from Bacteria to Eukaryotes.
PMID:27406565
CTRL+INSERT: retrotransposons and their contribution to regulation and innovation of the transcriptome.
PMID:27402545
Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.
PMID:27401172
Chromatin variation associated with liver metabolism is mediated by transposable elements.
PMID:27398095
Preferential Protection of Genetic Fidelity within Open Chromatin by the Mismatch Repair Machinery.
PMID:27382058
The Grand Challenge of Characterizing Ribonucleoprotein Networks.
PMID:27376072
Comments and General Discussion on "The Anatomical Problem Posed by Brain Complexity and Size: A Potential Solution".
PMID:27375436
[Treat to target and personalized medicine (precision medicine)].
PMID:27365026
Unraveling the message: insights into comparative genomics of the naked mole-rat.
PMID:27364349
Comprehensive analysis of lncRNAs microarray profile and mRNA-lncRNA co-expression in oncogenic HPV-positive cervical cancer cell lines.
PMID:27363024
Reverse transcriptase and intron number evolution.
PMID:27358863
Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads.
PMID:27354512
Inherited platelet disorders: Insight from platelet genomics using next-generation sequencing.
PMID:27348543
Long non-coding RNAs and complex diseases: from experimental results to computational models.
PMID:27345524
Mitochondrial Epigenetics and Environmental Exposure.
PMID:27344144
Integrated small copy number variations and epigenome maps of disorders of sex development.
PMID:27340555
The second decade of 3C technologies: detailed insights into nuclear organization.
PMID:27340173
Goodbye genome paper, hello genome report: the increasing popularity of 'genome announcements' and their impact on science.
PMID:27339634
The value of genomics in dissecting the RAS-network and in guiding therapeutics for RAS-driven cancers.
PMID:27338857
Nothing in Evolution Makes Sense Except in the Light of Genomics: Read-Write Genome Evolution as an Active Biological Process.
PMID:27338490
MiR-4638-5p inhibits castration resistance of prostate cancer through repressing Kidins220 expression and PI3K/AKT pathway activity.
PMID:27329728
Mammal madness: is the mammal tree of life not yet resolved?
PMID:27325836
Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data.
PMID:27325835
IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity.
PMID:27323856
FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model.
PMID:27322210
Computational Tools for Stem Cell Biology.
PMID:27318512
Repetitive element hypermethylation in multiple sclerosis patients.
PMID:27317098
Polymorphic Alu Insertion/Deletion in Different Caste and Tribal Populations from South India.
PMID:27315142
The Impact of Evolutionary Driving Forces on Human Complex Diseases: A Population Genetics Approach.
PMID:27313952
Evaluation of Bioinformatic Programmes for the Analysis of Variants within Splice Site Consensus Regions.
PMID:27313609
Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis.
PMID:27309962
The Epithelial-to-Mesenchymal Transition (EMT), a Particular Case.
PMID:27308335
phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats.
PMID:27307619
Prediction of ribosome footprint profile shapes from transcript sequences.
PMID:27307616
DMET™ (Drug Metabolism Enzymes and Transporters): a pharmacogenomic platform for precision medicine.
PMID:27304055
Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.
PMID:27297499
PiggyBac transposon-based polyadenylation-signal trap for genome-wide mutagenesis in mice.
PMID:27292714
Selection pressure on human STR loci and its relevance in repeat expansion disease.
PMID:27290643
The genetic heterogeneity of colorectal cancer predisposition - guidelines for gene discovery.
PMID:27279102
Ancient DNA and human history.
PMID:27274045
De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes.
PMID:27257545
CRISPR/Cas9 therapeutics: a cure for cancer and other genetic diseases.
PMID:27250031
The Clustered, Regularly Interspaced, Short Palindromic Repeats-associated Endonuclease 9 (CRISPR/Cas9)-created MDM2 T309G Mutation Enhances Vitreous-induced Expression of MDM2 and Proliferation and Survival of Cells.
PMID:27246850
Genome stability versus transcript diversity.
PMID:27246512
Global methylation, oxidative stress, and relative telomere length in biliary atresia patients.
PMID:27243754
New Trends in Aryl Hydrocarbon Receptor Biology.
PMID:27243009
Links between Human LINE-1 Retrotransposons and Hepatitis Virus-Related Hepatocellular Carcinoma.
PMID:27242996
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods.
PMID:27242037
Lineage-specific genomics: Frequent birth and death in the human genome: The human genome contains many lineage-specific elements created by both sequence and functional turnover.
PMID:27231054
LncRNApred: Classification of Long Non-Coding RNAs and Protein-Coding Transcripts by the Ensemble Algorithm with a New Hybrid Feature.
PMID:27228152
Decoding transcriptional enhancers: Evolving from annotation to functional interpretation.
PMID:27224938
Clinical genomics: from a truly personal genome viewpoint.
PMID:27221143
Processing and transcriptome expansion at the mRNA 3' end in health and disease: finding the right end.
PMID:27220521
Prenatal Air Pollution Exposures, DNA Methyl Transferase Genotypes, and Associations with Newborn LINE1 and Alu Methylation and Childhood Blood Pressure and Carotid Intima-Media Thickness in the Children's Health Study.
PMID:27219456
DNA methylation by DNMT1 and DNMT3b methyltransferases is driven by the MUC1-C oncoprotein in human carcinoma cells.
PMID:27212035
Identification of human RNA editing sites: A historical perspective.
PMID:27208508
The Brugada Syndrome: A Rare Arrhythmia Disorder with Complex Inheritance.
PMID:27200363
Retroviral DNA Integration.
PMID:27198982
Endogenous Transposase Source in Human Cells Mobilizes piggyBac Transposons.
PMID:27198853
A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer.
PMID:27197217
Challenges of Identifying Clinically Actionable Genetic Variants for Precision Medicine.
PMID:27195526
X-Linked Candidate Genes for a Ciliopathy-Like Disorder.
PMID:27194972
Conservation and Innovation of APOBEC3A Restriction Functions during Primate Evolution.
PMID:27189538
LTR12 promoter activation in a broad range of human tumor cells by HDAC inhibition.
PMID:27172897
P53 and the defenses against genome instability caused by transposons and repetitive elements.
PMID:27172878
Angiotensin II receptors and peritoneal dialysis-induced peritoneal fibrosis.
PMID:27167177
Genomic Approaches to Zebrafish Cancer.
PMID:27165352
CNS repair and axon regeneration: Using genetic variation to determine mechanisms.
PMID:27163547
Next-generation sequencing-based detection of germline L1-mediated transductions.
PMID:27161561
Transposable elements in the mammalian embryo: pioneers surviving through stealth and service.
PMID:27161170
Genomic analysis of mouse VL30 retrotransposons.
PMID:27158269
Roles for retrotransposon insertions in human disease.
PMID:27158268
What are We Learning and What Can We Learn from the Human Oral Microbiome Project?
PMID:27152251
The potential for liquid biopsies in the precision medical treatment of breast cancer.
PMID:27144060
The Dark Side of Cell Fusion.
PMID:27136533
Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch.
PMID:27136077
Redundans: an assembly pipeline for highly heterozygous genomes.
PMID:27131372
Genes and Small RNA Transcripts Exhibit Dosage-Dependent Expression Pattern in Maize Copy-Number Alterations.
PMID:27129738
A Protein Domain and Family Based Approach to Rare Variant Association Analysis.
PMID:27128313
piR-651 and its function in 95-D lung cancer cells.
PMID:27123245
Next-Generation Sequencing in the Genetics of Human Atrial Fibrillation.
PMID:27122724
Generation, Characterization and Application of Antibodies Directed against HERV-H Gag Protein in Colorectal Samples.
PMID:27119520
Metabolomics in epidemiology: from metabolite concentrations to integrative reaction networks.
PMID:27118561
Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine.
PMID:27110816
Non-negligible Occurrence of Errors in Gender Description in Public Data Sets.
PMID:27103889
Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products.
PMID:27100228
The endonuclease domain of the LINE-1 ORF2 protein can tolerate multiple mutations.
PMID:27099633
Alu SINE analyses of 3,000-year-old human skeletal remains: a pilot study.
PMID:27096009
Exosomes: The Link between GPCR Activation and Metastatic Potential?
PMID:27092178
Using an integrative approach to investigate the evolution of behaviour.
PMID:27087846
Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved.
PMID:27084945
Epigenetic regulation of bone cells.
PMID:27082893
iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing.
PMID:27081555
Identification of novel exonic mobile element insertions in epithelial ovarian cancers.
PMID:27081539
Evolution of Epigenetic Regulation in Vertebrate Genomes.
PMID:27080453
Incidentalome from Genomic Sequencing: A Barrier to Personalized Medicine?
PMID:27077130
Stress out the LINEs.
PMID:27066303
The challenge of ORF1p phosphorylation: Effects on L1 activity and its host.
PMID:27066302
Anchored pseudo-de novo assembly of human genomes identifies extensive sequence variation from unmapped sequence reads.
PMID:27061184
Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.
PMID:27060133
23andMe: a new two-sided data-banking market model.
PMID:27059184
What is translational bioinformatics?
PMID:27054069
RNA Sequencing in Schizophrenia.
PMID:27053919
Introducing precise genetic modifications into human 3PN embryos by CRISPR/Cas-mediated genome editing.
PMID:27052831
Associations and prognostic implications of Eastern Cooperative Oncology Group performance status and tumoral LINE-1 methylation status in stage III colon cancer patients.
PMID:27051466
Retrotransposon-associated long non-coding RNAs in mice and men.
PMID:27044413
Active recombinant Tol2 transposase for gene transfer and gene discovery applications.
PMID:27042235
No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.
PMID:27035985
Alu methylation serves as a biomarker for non-invasive diagnosis of glioma.
PMID:27028997
ILNCSIM: improved lncRNA functional similarity calculation model.
PMID:27028993
Immune responses to endogenous retroelements: taking the bad with the good.
PMID:27026073
LINE-1 distribution in six rodent genomes follow a species-specific pattern.
PMID:27019429
Natural Selection and Genetic Diversity in the Butterfly Heliconius melpomene.
PMID:27017626
Post-Transcriptional Control of LINE-1 Retrotransposition by Cellular Host Factors in Somatic Cells.
PMID:27014690
To be an author.
PMID:27011823
The Gene Expression Omnibus Database.
PMID:27008011
Unraveling the evolutionary scenario of the hobo element in populations of Drosophila melanogaster and D. simulans in South America using the TPE repeats as markers.
PMID:27007908
Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues.
PMID:27003935
ROBO2 gene variants in children with primary nonsyndromic vesicoureteral reflux with or without renal hypoplasia/dysplasia.
PMID:27002985
What Next in Schizophrenia Genetics for the Psychiatric Genomics Consortium?
PMID:26994396
The Anolis Lizard Genome: An Amniote Genome without Isochores?
PMID:26992416
Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome.
PMID:26992093
Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus.
PMID:26989998
Horizontal transfer of β-carbonic anhydrase genes from prokaryotes to protozoans, insects, and nematodes.
PMID:26983858
Suppressing H19 Modulates Tumorigenicity and Stemness in U251 and U87MG Glioma Cells.
PMID:26983719
Next generation sequencing (NGS) database for tandem repeats with multiple pattern 2°-shaft multicore string matching.
PMID:26981434
Recurrent Gene Duplication Diversifies Genome Defense Repertoire in Drosophila.
PMID:26979388
Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells.
PMID:26974322
Prp8 retinitis pigmentosa mutants cause defects in the transition between the catalytic steps of splicing.
PMID:26968627
Heavy Metal Exposure Influences Double Strand Break DNA Repair Outcomes.
PMID:26966913
Identification and Analysis of the Role of Superoxide Dismutases Isoforms in the Pathogenesis of Paracoccidioides spp.
PMID:26963091
Blood-Borne Pathogens: A Canadian Blood Services Centre for Innovation Symposium.
PMID:26962008
Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals.
PMID:26952212
Estrogen Receptor Alpha (ESR1) Single-Nucleotide Polymorphisms (SNPs) Affect Malignant Melanoma Susceptibility and Disease Course.
PMID:26949342
Contemporary views on the genetics of anorexia nervosa.
PMID:26944296
LINE retrotransposition and host DNA repair machinery.
PMID:26942045
Alu elements and DNA double-strand break repair.
PMID:26942043
Regulatory evolution of innate immunity through co-option of endogenous retroviruses.
PMID:26941318
Forty years of The Selfish Gene are not enough.
PMID:26936472
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.
PMID:26936254
Modeling congenital disease and inborn errors of development in Drosophila melanogaster.
PMID:26935104
Personalised cancer care: promises and challenges of targeted therapy.
PMID:26933155
DNA methylation in human epigenomes depends on local topology of CpG sites.
PMID:26932361
Gene Variant Databases and Sharing: Creating a Global Genomic Variant Database for Personalized Medicine.
PMID:26931283
Mechanisms underlying structural variant formation in genomic disorders.
PMID:26924765
Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing.
PMID:26922242
Transcriptome Analysis in Domesticated Species: Challenges and Strategies.
PMID:26917953
Discovery of a new repeat family in the Callithrix jacchus genome.
PMID:26916108
Retrotransposons as regulators of gene expression.
PMID:26912865
Human genetic variation database, a reference database of genetic variations in the Japanese population.
PMID:26911352
Atlas of Cryptic Genetic Relatedness Among 1000 Human Genomes.
PMID:26907499
The Reverse Transcriptase Encoded by LINE-1 Retrotransposons in the Genesis, Progression, and Therapy of Cancer.
PMID:26904537
Ensembl comparative genomics resources.
PMID:26896847
LEAP: L1 Element Amplification Protocol.
PMID:26895063
Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.
PMID:26895059
LINE-1 Cultured Cell Retrotransposition Assay.
PMID:26895052
DNA methylation variation of human-specific Alu repeats.
PMID:26890526
A protein constructed de novo enables cell growth by altering gene regulation.
PMID:26884172
Managing risks in drug discovery: reproducibility of published findings.
PMID:26883784
Alu retrotransposons promote differentiation of human carcinoma cells through the aryl hydrocarbon receptor.
PMID:26883630
Molecular features of cellular reprogramming and development.
PMID:26883001
Unravelling the human genome-phenome relationship using phenome-wide association studies.
PMID:26875678
A Biologist's Field Guide to Multiplexed Quantitative Proteomics.
PMID:26873251
MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals.
PMID:26872770
A benchmark study on error-correction by read-pairing and tag-clustering in amplicon-based deep sequencing.
PMID:26868371
Curated eutherian third party data gene data sets.
PMID:26862561
The contribution of transposable elements to size variations between four teleost genomes.
PMID:26862351
Biochemistry and physiology within the framework of the extended synthesis of evolutionary biology.
PMID:26861860
Enrichment analysis of Alu elements with different spatial chromatin proximity in the human genome.
PMID:26861146
Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus.
PMID:26860923
Quantification of unmethylated Alu (QUAlu): a tool to assess global hypomethylation in routine clinical samples.
PMID:26859682
Feature co-localization landscape of the human genome.
PMID:26854351
Graphene nanodevices for DNA sequencing.
PMID:26839258
Decoding DNA, RNA and peptides with quantum tunnelling.
PMID:26839257
When Medicine Meets Engineering-Paradigm Shifts in Diagnostics and Therapeutics.
PMID:26835672
SncRNA (microRNA &snoRNA) opposite expression pattern found in multiple sclerosis relapse and remission is sex dependent.
PMID:26831009
Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility.
PMID:26818075
An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cells.
PMID:26814573
Impact of host genetic polymorphisms on vaccine induced antibody response.
PMID:26809773
Classification and characterization of human endogenous retroviruses; mosaic forms are common.
PMID:26800882
Next-generation sequencing as an approach to dairy starter selection.
PMID:26798445
detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes.
PMID:26795595
Discordant Haplotype Sequencing Identifies Functional Variants at the 2q33 Breast Cancer Risk Locus.
PMID:26795348
Human Endogenous Retroviruses as Pathogenic Factors in the Development of Schizophrenia.
PMID:26793126
Infectious Entry Pathway Mediated by the Human Endogenous Retrovirus K Envelope Protein.
PMID:26792739
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.
PMID:26780094
Genomic landscapes of endogenous retroviruses unveil intricate genetics of conventional and genetically-engineered laboratory mouse strains.
PMID:26779669
Insertion of Retrotransposons at Chromosome Ends: Adaptive Response to Chromosome Maintenance.
PMID:26779254
Transposable Elements, Polydactyl Proteins, and the Genesis of Human-Specific Transcription Networks.
PMID:26763983
Different Facets of Copy Number Changes: Permanent, Transient, and Adaptive.
PMID:26755558
A Molecular Perspective on Procedures and Outcomes with Assisted Reproductive Technologies.
PMID:26747835
Experimental methods to preserve male fertility and treat male factor infertility.
PMID:26746133
Crossing the LINE Toward Genomic Instability: LINE-1 Retrotransposition in Cancer.
PMID:26734601
Pathway Analysis: State of the Art.
PMID:26733877
Diagnosis of D-Bifunctional Protein Deficiency through Whole-Genome Sequencing: Implications for Cost-Effective Care.
PMID:26733776
In Silico Functional Annotation of Genomic Variation.
PMID:26724722
Transposable element detection from whole genome sequence data.
PMID:26719777
Enhanced expression of LINE-1-encoded ORF2 protein in early stages of colon and prostate transformation.
PMID:26716650
Insulated Foamy Viral Vectors.
PMID:26715244
Linking short tandem repeat polymorphisms with cytosine modifications in human lymphoblastoid cell lines.
PMID:26714498
Gene therapy: progress and predictions.
PMID:26702034
Milk: an epigenetic amplifier of FTO-mediated transcription? Implications for Western diseases.
PMID:26691922
Horizontal functional gene transfer from bacteria to fishes.
PMID:26691285
Comparing genetic variants detected in the 1000 genomes project with SNPs determined by the International HapMap Consortium.
PMID:26690529
5th International ACC Symposium: The New Genetics of Benign Adrenocortical Neoplasia: Hyperplasias, Adenomas, and Their Implications for Progression into Cancer.
PMID:26684645
A Small RNA-Based Immune System Defends Germ Cells against Mobile Genetic Elements.
PMID:26681955
Somatic mosaicism: on the road to cancer.
PMID:26678315
Estradiol differentially induces progesterone receptor isoforms expression through alternative promoter regulation in a mouse embryonic hypothalamic cell line.
PMID:26676302
Circulating long noncoding RNA GAS5 levels are correlated to prevalence of type 2 diabetes mellitus.
PMID:26675493
L1 retrotransposition requires rapid ORF1p oligomerization, a novel coiled coil-dependent property conserved despite extensive remodeling.
PMID:26673717
Expressed Sequence Tags Analysis and Design of Simple Sequence Repeats Markers from a Full-Length cDNA Library in Perilla frutescens (L.).
PMID:26664999
Circulating nucleic acids: a new class of physiological mobile genetic elements.
PMID:26664710
Evolution of Nine Microsatellite Loci in the Fungus Fusarium oxysporum.
PMID:26661928
Exercise-conditioned plasma attenuates nuclear concentrations of DNA methyltransferase 3B in human peripheral blood mononuclear cells.
PMID:26660547
The domain structure and distribution of Alu elements in long noncoding RNAs and mRNAs.
PMID:26654912
Comparative genomic analysis of eutherian tumor necrosis factor ligand genes.
PMID:26646413
Systems Genetic Validation of the SNP-Metabolite Association in Rice Via Metabolite-Pathway-Based Phenome-Wide Association Scans.
PMID:26640468
Segmenting the Human Genome into Isochores.
PMID:26640363
RNA Sequence Analysis of Human Huntington Disease Brain Reveals an Extensive Increase in Inflammatory and Developmental Gene Expression.
PMID:26636579
Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes.
PMID:26635396
Progress and challenges in bioinformatics approaches for enhancer identification.
PMID:26634919
Metagenomic Classification Using an Abstraction Augmented Markov Model.
PMID:26618474
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages.
PMID:26613339
Obesity-induced sperm DNA methylation changes at satellite repeats are reprogrammed in rat offspring.
PMID:26608942
microRNAs as neuroregulators, biomarkers and therapeutic agents in neurodegenerative diseases.
PMID:26608596
The PsychENCODE project.
PMID:26605881
Aquatic adaptation and the evolution of smell and taste in whales.
PMID:26605054
Transcriptome networks in the mouse retina: An exon level BXD RI database.
PMID:26604663
Multinational teams and diseconomies of scale in collaborative research.
PMID:26601251
Evolution and Biological Roles of Alternative 3'UTRs.
PMID:26597575
Transcriptomics of diapause in an isogenic self-fertilizing vertebrate.
PMID:26597228
Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain.
PMID:26590212
A 3' Poly(A) Tract Is Required for LINE-1 Retrotransposition.
PMID:26585388
Infection-Induced Retrotransposon-Derived Noncoding RNAs Enhance Herpesviral Gene Expression via the NF-κB Pathway.
PMID:26584434
Ancestral Mutations Acquired in Refrex-1, a Restriction Factor against Feline Retroviruses, during its Cooption and Domestication.
PMID:26581999
What might retrotransposons teach us about aging?
PMID:26581630
Suppression of the Arboviruses Dengue and Chikungunya Using a Dual-Acting Group-I Intron Coupled with Conditional Expression of the Bax C-Terminal Domain.
PMID:26580561
Transposable element polymorphisms recapitulate human evolution.
PMID:26579215
Death of a dogma: eukaryotic mRNAs can code for more than one protein.
PMID:26578573
KATZLDA: KATZ measure for the lncRNA-disease association prediction.
PMID:26577439
Adaptive Evolution Coupled with Retrotransposon Exaptation Allowed for the Generation of a Human-Protein-Specific Coding Gene That Promotes Cancer Cell Proliferation and Metastasis in Both Haematological Malignancies and Solid Tumours: The Extraordinary Case of MYEOV Gene.
PMID:26568894
Are Synonymous Sites in Primates and Rodents Functionally Constrained?
PMID:26563252
Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages.
PMID:26562410
The sequence of sequencers: The history of sequencing DNA.
PMID:26554401
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
PMID:26553804
Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells.
PMID:26550473
Long noncoding RNA MIR31HG exhibits oncogenic property in pancreatic ductal adenocarcinoma and is negatively regulated by miR-193b.
PMID:26549028
Linking Genes to Cardiovascular Diseases: Gene Action and Gene-Environment Interactions.
PMID:26545598
Long noncoding RNAs in T lymphocytes.
PMID:26538526
Gain of a New Exon by a Lineage-Specific Alu Element-Integration Event in the BCS1L Gene during Primate Evolution.
PMID:26537194
Characteristics of α-Gal epitope, anti-Gal antibody, α1,3 galactosyltransferase and its clinical exploitation (Review).
PMID:26531137
Genes and dental disorders.
PMID:26527946
Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data.
PMID:26525298
Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes.
PMID:26517682
Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data.
PMID:26511205
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors.
PMID:26510915
Genome-wide evolutionary and functional analysis of the Equine Repetitive Element 1: an insertion in the myostatin promoter affects gene expression.
PMID:26503543
Discovery and characterization of Alu repeat sequences via precise local read assembly.
PMID:26503250
Clinical prospects of long noncoding RNAs as novel biomarkers and therapeutic targets in prostate cancer.
PMID:26503110
Deciphering the Developmental Dynamics of the Mouse Liver Transcriptome.
PMID:26496202
Evidence of Extensive Alternative Splicing in Post Mortem Human Brain HTT Transcription by mRNA Sequencing.
PMID:26496077
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.
PMID:26492141
Role of the single deaminase domain APOBEC3A in virus restriction, retrotransposition, DNA damage and cancer.
PMID:26489798
Regulation of PKR by RNA: formation of active and inactive dimers.
PMID:26488609
PCR-Free Enrichment of Mitochondrial DNA from Human Blood and Cell Lines for High Quality Next-Generation DNA Sequencing.
PMID:26488301
Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken.
PMID:26486989
Kuwaiti population subgroup of nomadic Bedouin ancestry-Whole genome sequence and analysis.
PMID:26484159
Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis.
PMID:26484107
Third party annotation gene data set of eutherian lysozyme genes.
PMID:26484105
Cardiac cAMP: production, hydrolysis, modulation and detection.
PMID:26483685
Increased Transcript Complexity in Genes Associated with Chronic Obstructive Pulmonary Disease.
PMID:26480348
Potential impact of gene regulatory mechanisms on the evolution of multicellularity in the volvocine algae.
PMID:26479715
Analytical and Clinical Validation of a Digital Sequencing Panel for Quantitative, Highly Accurate Evaluation of Cell-Free Circulating Tumor DNA.
PMID:26474073
Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens.
PMID:26452545
Current strategies for mutation detection in phenotype-driven screens utilising next generation sequencing.
PMID:26449678
The Fine LINE: Methylation Drawing the Cancer Landscape.
PMID:26448926
Ten Simple Rules for Writing a Reply Paper.
PMID:26448197
Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers.
PMID:26447755
Stacked thin layers of metaphase chromatin explain the geometry of chromosome rearrangements and banding.
PMID:26446309
Progress of cancer genomics.
PMID:26445603
Genetics of Hearing Loss: Syndromic.
PMID:26443487
Genetic variation and the de novo assembly of human genomes.
PMID:26442640
LINE-1 activity as molecular basis for genomic instability associated with light exposure at night.
PMID:26442182
Repetitive elements regulate circular RNA biogenesis.
PMID:26442181
Drawing a fine line on endogenous retroelement activity.
PMID:26442176
Endogenous retrovirus-mediated genomic variations in chimpanzees.
PMID:26442175
An assay to monitor the activity of DNA transposition complexes yields a general quality control measure for transpositional recombination reactions.
PMID:26442171
Assembly and characterization of novel Alu inserts detected from next-generation sequencing data.
PMID:26442170
The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.
PMID:26439490
Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the Krüppel-associated box zinc finger protein family.
PMID:26435754
Alternative Splicing QTLs in European and African Populations.
PMID:26430802
Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms.
PMID:26428853
Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data.
PMID:26423047
Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples.
PMID:26420835
Present and future challenges of induced pluripotent stem cells.
PMID:26416678
Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?
PMID:26404381
Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans.
PMID:26399483
De novo sequencing and assembly analysis of transcriptome in the Sodom apple (Calotropis gigantea).
PMID:26395839
Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies.
PMID:26395405
Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5' splice site strength.
PMID:26392272
A structural approach reveals how neighbouring C2H2 zinc fingers influence DNA binding specificity.
PMID:26384429
The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression.
PMID:26382853
Bioinformatics in Africa: The Rise of Ghana?
PMID:26378921
Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival.
PMID:26378581
The genome of the vervet (Chlorocebus aethiops sabaeus).
PMID:26377836
Donkey genome and insight into the imprinting of fast karyotype evolution.
PMID:26373886
miR-128 represses L1 retrotransposition by binding directly to L1 RNA.
PMID:26367248
Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes.
PMID:26365239
Short interspersed DNA elements and miRNAs: a novel hidden gene regulation layer in zebrafish?
PMID:26363800
The Bottleneck in Genetic Testing.
PMID:26358106
Aberrant reduction of telomere repetitive sequences in plasma cell-free DNA for early breast cancer detection.
PMID:26356673
Can a few non-coding mutations make a human brain?
PMID:26350501
Osteosarcoma Genetics and Epigenetics: Emerging Biology and Candidate Therapies.
PMID:26349415
Genetic Susceptibility to Rhodococcus equi.
PMID:26340305
Villain of Molecular Biology: Why are we not reproducible in research?
PMID:26339478
EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering.
PMID:26335049
LINE-1 in cancer: multifaceted functions and potential clinical implications.
PMID:26334179
Utility of whole-genome sequencing for detection of newborn screening disorders in a population cohort of 1,696 neonates.
PMID:26334177
Improving the Power of Structural Variation Detection by Augmenting the Reference.
PMID:26322511
Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project.
PMID:26319576
Next-generation sequencing: hype and hope for development of personalized radiation therapy?
PMID:26316159
Recent advances in the study of active endogenous retrovirus envelope glycoproteins in the mammalian placenta.
PMID:26311491
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.
PMID:26309733
Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes.
PMID:26300000
Structural and functional liaisons between transposable elements and satellite DNAs.
PMID:26293606
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals.
PMID:26292667
Tandem repeat variation in human and great ape populations and its impact on gene expression divergence.
PMID:26290536
Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance.
PMID:26290182
The genomic landscape of human immune-mediated diseases.
PMID:26290150
Oncoprotein ZNF322A transcriptionally deregulates alpha-adducin, cyclin D1 and p53 to promote tumor growth and metastasis in lung cancer.
PMID:26279304
Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma.
PMID:26279299
Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA.
PMID:26278472
An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.
PMID:26276634
RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself.
PMID:26275108
Generalised Anxiety Disorder--A Twin Study of Genetic Architecture, Genome-Wide Association and Differential Gene Expression.
PMID:26274327
Making the case for chromatin profiling: a new tool to investigate the immune-regulatory landscape.
PMID:26272294
Disease-associated mutation in SRSF2 misregulates splicing by altering RNA-binding affinities.
PMID:26261309
SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation.
PMID:26259533
A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data.
PMID:26258935
Noncoding RNAs, Emerging Regulators of Skeletal Muscle Development and Diseases.
PMID:26258142
Genome-wide profiling of DNA methylation reveals preferred sequences of DNMTs in hepatocellular carcinoma cells.
PMID:26254611
Paradigm shifts in genomics through the FANTOM projects.
PMID:26253466
SNP Formation Bias in the Murine Genome Provides Evidence for Parallel Evolution.
PMID:26253317
Clinical exome sequencing in neurogenetic and neuropsychiatric disorders.
PMID:26250888
GC-Content of Synonymous Codons Profoundly Influences Amino Acid Usage.
PMID:26248983
'Cut from the same cloth': Shared microsatellite variants among cancers link to ectodermal tissues-neural tube and crest cells.
PMID:26246470
A call for benchmarking transposable element annotation methods.
PMID:26244060
Prenatal Programming and Toxicity (PPTOX) Introduction.
PMID:26241073
Use of miRNAs in biofluids as biomarkers in dietary and lifestyle intervention studies.
PMID:26233309
KLF/SP Transcription Factor Family Evolution: Expansion, Diversification, and Innovation in Eukaryotes.
PMID:26232396
Big Data Analytics in Healthcare.
PMID:26229957
Transcription factors, chromatin proteins and the diversification of Hemiptera.
PMID:26226651
A Genome-Wide Landscape of Retrocopies in Primate Genomes.
PMID:26224704
The role of Alu elements in the cis-regulation of RNA processing.
PMID:26223268
Long Non-coding RNA ANRIL and Polycomb in Human Cancers and Cardiovascular Disease.
PMID:26220772
Circadian disruption and breast cancer: an epigenetic link?
PMID:26220712
Genomic medicine in gastroenterology: A new approach or a new specialty?
PMID:26217074
Epigenetic Alterations in Colorectal Cancer: Emerging Biomarkers.
PMID:26216839
Double strand break repair by capture of retrotransposon sequences and reverse-transcribed spliced mRNA sequences in mouse zygotes.
PMID:26216318
An open ecosystem engagement strategy through the lens of global food safety.
PMID:26213614
Glioma Association and Balancing Selection of ZFPM2.
PMID:26207917
Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
PMID:26206263
MI-PVT: A Tool for Visualizing the Chromosome-Centric Human Proteome.
PMID:26204236
Cell therapies and regenerative medicine.
PMID:26202498
Molecular Testing in Myelodysplastic Syndromes for the Practicing Oncologist: Will the Progress Fulfill the Promise?
PMID:26194858
Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage.
PMID:26194104
Traumatic spinal cord injury in mice with human immune systems.
PMID:26193167
Regulation of protein homeostasis in neurodegenerative diseases: the role of coding and non-coding genes.
PMID:26190021
Utility and limitations of exome sequencing as a genetic diagnostic tool for conditions associated with pediatric sudden cardiac arrest/sudden cardiac death.
PMID:26187847
LINE-1 Retroelements Get ZAPped!
PMID:26182081
Harnessing Pandemonium: The Clinical Implications of Tumor Heterogeneity in Ovarian Cancer.
PMID:26175968
The NIH BD2K center for big data in translational genomics.
PMID:26174866
Defining "mutation" and "polymorphism" in the era of personal genomics.
PMID:26173390
Regulation of human MAPT gene expression.
PMID:26170022
Long non-coding RNAs in innate and adaptive immunity.
PMID:26166759
Biodiversity Meets Neuroscience: From the Sequencing Ship (Ship-Seq) to Deciphering Parallel Evolution of Neural Systems in Omic's Era.
PMID:26163680
Detection of Genomic Structural Variants from Next-Generation Sequencing Data.
PMID:26161383
Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.
PMID:26160651
Long Noncoding RNA in Digestive Tract Cancers: Function, Mechanism, and Potential Biomarker.
PMID:26156325
Read count-based method for high-throughput allelic genotyping of transposable elements and structural variants.
PMID:26153459
Label-free DNA sequencing using Millikan detection.
PMID:26151683
Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules.
PMID:26147120
An improved understanding of cancer genomics through massively parallel sequencing.
PMID:26146607
Revisiting disease genes based on whole-exome sequencing in consanguineous populations.
PMID:26141664
RNA Structures as Mediators of Neurological Diseases and as Drug Targets.
PMID:26139368
DNAseq Workflow in a Diagnostic Context and an Example of a User Friendly Implementation.
PMID:26137478
Hydra as a tractable, long-lived model system for senescence.
PMID:26136619
Somatic Mutations and Clonal Hematopoiesis in Aplastic Anemia.
PMID:26132940
High-throughput RNA sequencing reveals structural differences of orthologous brain-expressed genes between western lowland gorillas and humans.
PMID:26132897
Assembly and diploid architecture of an individual human genome via single-molecule technologies.
PMID:26121404
Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry.
PMID:26120868
The diversification of PHIS transposon superfamily in eukaryotes.
PMID:26120370
Epigenetic signaling in schizophrenia.
PMID:26120009
The Role of Transposable Elements in the Origin and Evolution of MicroRNAs in Human.
PMID:26115450
Causes of genome instability: the effect of low dose chemical exposures in modern society.
PMID:26106144
P Transposable Elements in Drosophila and other Eukaryotic Organisms.
PMID:26104714
The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.
PMID:26104698
Np9, a cellular protein of retroviral ancestry restricted to human, chimpanzee and gorilla, binds and regulates ubiquitin ligase MDM2.
PMID:26103464
Engineered CRISPR-Cas9 nucleases with altered PAM specificities.
PMID:26098369
Connecting the speckles: Splicing kinases and their role in tumorigenesis and treatment response.
PMID:26098145
Associations between genetic variation in one-carbon metabolism and LINE-1 DNA methylation in histologically normal breast tissues.
PMID:26090795
RNA Sequencing for Identification of Differentially Expressed Noncoding Transcripts during Adipogenic Differentiation of Adipose-Derived Stromal Cells.
PMID:26090763
Normalization of Complete Genome Characteristics: Application to Evolution from Primitive Organisms to Homo sapiens.
PMID:26085808
Long noncoding RNAs in development and cancer: potential biomarkers and therapeutic targets.
PMID:26082843
Mx1 and Mx2 key antiviral proteins are surprisingly lost in toothed whales.
PMID:26080416
Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex.
PMID:26076492
Breaking bad: The mutagenic effect of DNA repair.
PMID:26073774
The epigenetics of aging and neurodegeneration.
PMID:26072273
Advances in long noncoding RNAs: identification, structure prediction and function annotation.
PMID:26072035
Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis.
PMID:26070663
Coding Microsatellite Frameshift Mutations Accumulate in Atherosclerotic Carotid Artery Lesions: Evaluation of 26 Cases and Literature Review.
PMID:26070012
Optical Imaging of Paramagnetic Bead-DNA Aggregation Inhibition Allows for Low Copy Number Detection of Infectious Pathogens.
PMID:26068926
Preferential Amplification of Pathogenic Sequences.
PMID:26067233
Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity.
PMID:26061969
Gene therapy for cancer: present status and future perspective.
PMID:26056594
Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells.
PMID:26056301
A general concept for consistent documentation of computational analyses.
PMID:26055099
Differential Epigenetic Effects of Atmospheric Cold Plasma on MCF-7 and MDA-MB-231 Breast Cancer Cells.
PMID:26042423
Emerging applications of read profiles towards the functional annotation of the genome.
PMID:26042150
Cardiovascular genetics: technological advancements and applicability for dilated cardiomyopathy.
PMID:26031632
Molecular epigenetic switches in neurodevelopment in health and disease.
PMID:26029068
Comprehensive identification of genes driven by ERV9-LTRs reveals TNFRSF10B as a re-activatable mediator of testicular cancer cell death.
PMID:26024393
Genome-Wide Search Identifies 1.9 Mb from the Polar Bear Y Chromosome for Evolutionary Analyses.
PMID:26019166
The human transmembrane proteome.
PMID:26018427
A statistical framework to predict functional non-coding regions in the human genome through integrated analysis of annotation data.
PMID:26015273
Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.
PMID:26014613
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
PMID:26006009
De novo assembly of a haplotype-resolved human genome.
PMID:26006006
The cancer cell map initiative: defining the hallmark networks of cancer.
PMID:26000852
High-throughput sequencing technologies.
PMID:26000844
Choosing the Right Tool for the Job: RNAi, TALEN, or CRISPR.
PMID:26000843
The road from next-generation sequencing to personalized medicine.
PMID:26000024
The potential role of Alu Y in the development of resistance to SN38 (Irinotecan) or oxaliplatin in colorectal cancer.
PMID:25997618
Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites.
PMID:25995269
The role of epidermal growth factor-like module containing mucin-like hormone receptor 2 in human cancers.
PMID:25992231
Differential SINE evolution in vesper and non-vesper bats.
PMID:25991928
A low-latency, big database system and browser for storage, querying and visualization of 3D genomic data.
PMID:25990738
Roles of solvent accessibility and gene expression in modeling protein sequence evolution.
PMID:25987828
Cardiac gene expression data and in silico analysis provide novel insights into human and mouse taste receptor gene regulation.
PMID:25986534
A seven-gene CpG-island methylation panel predicts breast cancer progression.
PMID:25986046
LINEs in mice: features, families, and potential roles in early development.
PMID:25975894
Epigenetics and pharmacology.
PMID:25966315
Division of labor between IRF1 and IRF2 in regulating different stages of transcriptional activation in cellular antiviral activities.
PMID:25960866
The hidden side of unstable DNA repeats: Mutagenesis at a distance.
PMID:25956860
Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons.
PMID:25954322
The Zinc-Finger Antiviral Protein ZAP Inhibits LINE and Alu Retrotransposition.
PMID:25951186
Haplotype-resolved genome sequencing: experimental methods and applications.
PMID:25948246
Functional significance of the sex chromosomes during spermatogenesis.
PMID:25948089
The renaissance of developmental biology.
PMID:25946596
Advances in genetics and genomics: use and limitations in achieving malaria elimination goals.
PMID:25943157
Initial description of primate-specific cystine-knot Prometheus genes and differential gene expansions of D-dopachrome tautomerase genes.
PMID:25941635
Obstruction of adaptation in diploids by recessive, strongly deleterious alleles.
PMID:25941393
Genome-wide amplification of proviral sequences reveals new polymorphic HERV-K(HML-2) proviruses in humans and chimpanzees that are absent from genome assemblies.
PMID:25927962
Utility of proteomics in obstetric disorders: a review.
PMID:25926758
Functional classification of 15 million SNPs detected from diverse chicken populations.
PMID:25926514
Alu-mediated diverse and complex pathogenic copy-number variants within human chromosome 17 at p13.3.
PMID:25908615
Identification, Diversity and Evolution of MITEs in the Genomes of Microsporidian Nosema Parasites.
PMID:25898273
Do larger genomes contain more diverse transposable elements?
PMID:25896861
piRNA involvement in genome stability and human cancer.
PMID:25895683
Sustained proliferation in cancer: Mechanisms and novel therapeutic targets.
PMID:25892662
Structural variation mutagenesis of the human genome: Impact on disease and evolution.
PMID:25892534
Laser capture microdissection: Big data from small samples.
PMID:25892148
Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan.
PMID:25887915
Unraveling the 3D genome: genomics tools for multiscale exploration.
PMID:25887733
Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs.
PMID:25887594
Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals.
PMID:25887476
CopywriteR: DNA copy number detection from off-target sequence data.
PMID:25887352
Melatonin: an inhibitor of breast cancer.
PMID:25876649
A simple strategy for reducing false negatives in calling variants from single-cell sequencing data.
PMID:25876174
Evolution of genetic techniques: past, present, and beyond.
PMID:25874212
AID to overcome the limitations of genomic information by introducing somatic DNA alterations.
PMID:25873751
Seeking a roadmap toward neuroepigenetics.
PMID:25856479
Long noncoding RNAs in cardiac development and ageing.
PMID:25855606
New bioinformatic tool for quick identification of functionally relevant endogenous retroviral inserts in human genome.
PMID:25853282
Evidence for Natural Selection in Nucleotide Content Relationships Based on Complete Mitochondrial Genomes: Strong Effect of Guanine Content on Separation between Terrestrial and Aquatic Vertebrates.
PMID:25853054
An epigenetic hypothesis for the genomic memory of pain.
PMID:25852480
A network of RNA and protein interactions in Fronto Temporal Dementia.
PMID:25852467
Biochemical functional predictions for protein structures of unknown or uncertain function.
PMID:25848497
The Human Alzheimer Disease Project: A New Call to Arms.
PMID:25844883
Temporal and spatial rearrangements of a repetitive element array on C57BL/6J mouse genome.
PMID:25839092
The mechanism of ageing: primary role of transposable elements in genome disintegration.
PMID:25837999
Progress and challenges in developing metabolic footprints from diet in human gut microbial cometabolism.
PMID:25833886
Non-coding RNAs and hypertension-unveiling unexpected mechanisms of hypertension by the dark matter of the genome.
PMID:25828869
Whole-exome sequencing and its impact in hereditary hearing loss.
PMID:25825321
Comprehensive data resources and analytical tools for pathological association of aminoacyl tRNA synthetases with cancer.
PMID:25824651
The future of human cerebral cartography: a novel approach.
PMID:25823868
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.
PMID:25823460
Non-coding RNA: a new frontier in regulatory biology.
PMID:25821635
Mobilization of LINE-1 in irradiated mammary gland tissue may potentially contribute to low dose radiation-induced genomic instability.
PMID:25821563
Activation of an endogenous retrovirus-associated long non-coding RNA in human adenocarcinoma.
PMID:25821520
Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana.
PMID:25813042
Impacts of a biobank: Bridging the gap in translational cancer medicine.
PMID:25810570
Long Non-Coding RNA Expression during Aging in the Human Subependymal Zone.
PMID:25806019
Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs.
PMID:25798919
LINE-1 induces hTERT and ensures telomere maintenance in tumour cell lines.
PMID:25798839
Personal genomes, quantitative dynamic omics and personalized medicine.
PMID:25798291
Inter-locus as well as intra-locus heterogeneity in LINE-1 promoter methylation in common human cancers suggests selective demethylation pressure at specific CpGs.
PMID:25798207
DNA methylation dynamics in muscle development and disease.
PMID:25798107
Long noncoding RNA lincRNA-p21 is the major mediator of UVB-induced and p53-dependent apoptosis in keratinocytes.
PMID:25789975
Foamy viral vector integration sites in SCID-repopulating cells after MGMTP140K-mediated in vivo selection.
PMID:25786870
Human endogenous retrovirus group E and its involvement in diseases.
PMID:25785516
Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes.
PMID:25785303
Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds.
PMID:25781995
The Role of Regulatory Agencies and Intellectual Property: Part I.
PMID:25775921
Altering Genomic Integrity: Heavy Metal Exposure Promotes Transposable Element-Mediated Damage.
PMID:25774044
Prognostic significance of promoter CpG island hypermethylation and repetitive DNA hypomethylation in stage I lung adenocarcinoma.
PMID:25772390
Cancer metabolism: strategic diversion from targeting cancer drivers to targeting cancer suppliers.
PMID:25767677
Evolutionary patterns of DNA base composition and correlation to polymorphisms in DNA repair systems.
PMID:25765652
Sequence and analysis of a whole genome from Kuwaiti population subgroup of Persian ancestry.
PMID:25765185
U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals.
PMID:25761766
The contribution of alu elements to mutagenic DNA double-strand break repair.
PMID:25761216
Evaluating historical candidate genes for schizophrenia.
PMID:25754081
Landscape of insertion polymorphisms in the human genome.
PMID:25745018
On bioinformatic resources.
PMID:25743088
Whole genome analysis of a Vietnamese trio.
PMID:25740146
SVA retrotransposition in exon 6 of the coagulation factor IX gene causing severe hemophilia B.
PMID:25739383
Epigenetic Mechanisms of Serotonin Signaling.
PMID:25734378
Transcriptional activity of human endogenous retroviruses in human peripheral blood mononuclear cells.
PMID:25734056
Toward a magic or imaginary bullet? Ligands for drug targeting to cancer cells: principles, hopes, and challenges.
PMID:25733832
The effects of chromatin organization on variation in mutation rates in the genome.
PMID:25732611
Mismatch repair during homologous and homeologous recombination.
PMID:25731766
Type I interferon controls propagation of long interspersed element-1.
PMID:25716322
terMITEs: miniature inverted-repeat transposable elements (MITEs) in the termite genome (Blattodea: Termitoidae).
PMID:25711308
Genetic changes shaping the human brain.
PMID:25710529
Computational prediction of molecular pathogen-host interactions based on dual transcriptome data.
PMID:25705211
Genome architecture and its roles in human copy number variation.
PMID:25705150
Genetics of Vascular Dementia.
PMID:25705074
Pseudogene-derived lncRNAs: emerging regulators of gene expression.
PMID:25699073
The genetic regulation of infant immune responses to vaccination.
PMID:25699041
Methods in molecular cardiology: in silico cloning.
PMID:25696371
Methods in molecular cardiology: microarray technology.
PMID:25696214
Methods in molecular cardiology: DNA sequencing.
PMID:25696079
The effect of life history on retroviral genome invasions.
PMID:25692467
C2H2 zinc finger proteins greatly expand the human regulatory lexicon.
PMID:25690854
Personalization of the immunosuppressive treatment in renal transplant recipients: the great challenge in "omics" medicine.
PMID:25690039
The Genome 10K Project: a way forward.
PMID:25689317
Biomarkers in Patients with Metastatic Breast Cancer and the PRAEGNANT Study Network.
PMID:25684786
Identification of the specific interactors of the human lariat RNA debranching enzyme 1 protein.
PMID:25671812
Embryonic stem cell specific "master" replication origins at the heart of the loss of pluripotency.
PMID:25658386
Dispersal of an ancient retroposon in the TP53 promoter of Bovidae: phylogeny, novel mechanisms, and potential implications for cow milk persistency.
PMID:25653076
Utilising the resources of the International Knockout Mouse Consortium: the Australian experience.
PMID:25645994
A copy number variation map of the human genome.
PMID:25645873
The aging clock and circadian control of metabolism and genome stability.
PMID:25642238
The decline of human endogenous retroviruses: extinction and survival.
PMID:25640971
Pure interstitial dup(6)(q22.31q22.31) - a case report.
PMID:25637059
Exogenous enzymes upgrade transgenesis and genetic engineering of farm animals.
PMID:25636347
The role of DNA insertions in phenotypic differentiation between humans and other primates.
PMID:25635043
Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil.
PMID:25633377
First insight into divergence, representation and chromosome distribution of reverse transcriptase fragments from L1 retrotransposons in peanut and wild relative species.
PMID:25633099
Next-generation sequencing for the diagnosis of cardiac arrhythmia syndromes.
PMID:25625719
Post-transcriptional regulation of long noncoding RNAs in cancer.
PMID:25618601
Diagnosis of an imprinted-gene syndrome by a novel bioinformatics analysis of whole-genome sequences from a family trio.
PMID:25614875
Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.
PMID:25613453
The expanding role of epigenetics.
PMID:25610838
Methylation status of long interspersed element-1 in advanced gastric cancer and its prognostic implication.
PMID:25609453
New concepts in breast cancer genomics and genetics.
PMID:25606588
Repeated horizontal transfers of four DNA transposons in invertebrates and bats.
PMID:25606061
Development of a monoclonal antibody specific to the endonuclease domain of the human LINE-1 ORF2 protein.
PMID:25606060
Intragenomic distribution of RTE retroelements suggests intrachromosomal movement.
PMID:25605325
A droplet digital PCR detection method for rare L1 insertions in tumors.
PMID:25598847
Jumping on the Train of Personalized Medicine: A Primer for Non- Geneticist Clinicians: Part 3. Clinical Applications in the Personalized Medicine Area.
PMID:25598768
The cytoplasmic tail of retroviral envelope glycoproteins.
PMID:25595807
Relationship between nucleosome positioning and progesterone-induced alternative splicing in breast cancer cells.
PMID:25589247
Computational cancer biology: education is a natural key to many locks.
PMID:25588624
Identification of the oncogenic kinase TOPK/PBK as a master mitotic regulator of C2H2 zinc finger proteins.
PMID:25575812
Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions.
PMID:25572935
The expanding epigenetic landscape of non-model organisms.
PMID:25568458
Diversity and impact of rare variants in genes encoding the platelet G protein-coupled receptors.
PMID:25567036
Self-reported race/ethnicity in the age of genomic research: its potential impact on understanding health disparities.
PMID:25563503
Why and how might genetic and phylogenetic diversity be reflected in the identification of key biodiversity areas?
PMID:25561678
Identification and computational analysis of gene regulatory elements.
PMID:25561628
Basic concepts and potential applications of genetics and genomics for cardiovascular and stroke clinicians: a scientific statement from the American Heart Association.
PMID:25561044
Long non-coding RNAs as regulators of the endocrine system.
PMID:25560704
RNA-binding proteins in pluripotency, differentiation, and reprogramming.
PMID:25554730
Epigenetic effects of low perinatal doses of flame retardant BDE-47 on mitochondrial and nuclear genes in rat offspring.
PMID:25533936
Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates.
PMID:25527834
Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes.
PMID:25523484
Inhibition of autoimmune Chagas-like heart disease by bone marrow transplantation.
PMID:25521296
DNA polymerases in biotechnology.
PMID:25520711
Genome-wide analysis of alternative splicing in Volvox carteri.
PMID:25516378
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.
PMID:25504731
Comparative genomics reveals insights into avian genome evolution and adaptation.
PMID:25504712
Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes.
PMID:25503085
Early mesozoic coexistence of amniotes and hepadnaviridae.
PMID:25501991
Focusing on long noncoding RNA dysregulation in gastric cancer.
PMID:25501508
Splicing of designer exons informs a biophysical model for exon definition.
PMID:25492963
Gene expression profiling of replicative and induced senescence.
PMID:25483067
Regulatory roles of LINE-1-encoded reverse transcriptase in cancer onset and progression.
PMID:25478632
JTD special edition 'Hot Topics in COPD'-The microbiome in COPD.
PMID:25478194
Extensive error in the number of genes inferred from draft genome assemblies.
PMID:25474019
Construction and characterization of three wheat bacterial artificial chromosome libraries.
PMID:25464379
Genetics of allergic diseases.
PMID:25459575
Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins.
PMID:25436857
Genes regulating lipid and protein metabolism are highly expressed in mammary gland of lactating dairy goats.
PMID:25433708
Guanine quadruplexes are formed by specific regions of human transposable elements.
PMID:25431265
Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes.
PMID:25431149
A pathophysiological view of the long non-coding RNA world.
PMID:25428918
Autoimmune thyroid disease and rheumatoid arthritis: relationship and the role of genetics.
PMID:25427993
A case study in connectomics: the history, mapping, and connectivity of the claustrum.
PMID:25426062
Advances in genome editing technology and its promising application in evolutionary and ecological studies.
PMID:25414792
Host control of insect endogenous retroviruses: small RNA silencing and immune response.
PMID:25412365
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.
PMID:25411453
Expression of human skin-specific genes defined by transcriptomics and antibody-based profiling.
PMID:25411189
Roles of intragenic and intergenic L1s in mouse and human.
PMID:25409429
Using mouse models to study function of transcriptional factors in T cell development.
PMID:25408871
De-repressing LncRNA-Targeted Genes to Upregulate Gene Expression: Focus on Small Molecule Therapeutics.
PMID:25405465
Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites.
PMID:25405079
Protein engineering of Cas9 for enhanced function.
PMID:25398355
Intronic variants in the NFKB1 gene may influence hearing forecast in patients with unilateral sensorineural hearing loss in Meniere's disease.
PMID:25397881
Clinical Management of Pediatric Genomic Testing.
PMID:25396100
Gene-Lifestyle Interactions in Complex Diseases: Design and Description of the GLACIER and VIKING Studies.
PMID:25396097
Stress and the dynamic genome: Steroids, epigenetics, and the transposome.
PMID:25385609
Resolving the complexity of the human genome using single-molecule sequencing.
PMID:25383537
Identification of candidate long noncoding RNAs associated with left ventricular hypertrophy.
PMID:25382655
Particles and microfluidics merged: perspectives of highly sensitive diagnostic detection.
PMID:25378716
Epidaurus: aggregation and integration analysis of prostate cancer epigenome.
PMID:25378314
DEEP: a general computational framework for predicting enhancers.
PMID:25378307
Multispecies coalescent analysis of the early diversification of neotropical primates: phylogenetic inference under strong gene trees/species tree conflict.
PMID:25377940
Conserved sequence-specific lincRNA-steroid receptor interactions drive transcriptional repression and direct cell fate.
PMID:25377354
A comparative study and a phylogenetic exploration of the compositional architectures of mammalian nuclear genomes.
PMID:25375262
A novel Alu-based real-time PCR method for the quantitative detection of plasma circulating cell-free DNA: sensitivity and specificity for the diagnosis of myocardial infarction.
PMID:25374065
Case-only exome sequencing and complex disease susceptibility gene discovery: study design considerations.
PMID:25371537
Three-Dimensional Algebraic Models of the tRNA Code and 12 Graphs for Representing the Amino Acids.
PMID:25370377
Reconceptualizing major depressive disorder as an infectious disease.
PMID:25364500
AN EFFICIENT ALGORITHM FOR CHINESE POSTMAN WALK ON BI-DIRECTED DE BRUIJN GRAPHS.
PMID:25364472
Human cardiac systems electrophysiology and arrhythmogenesis: iteration of experiment and computation.
PMID:25362174
Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data.
PMID:25354084
Investigating genomic structure using changept: A Bayesian segmentation model.
PMID:25349679
Mobster: accurate detection of mobile element insertions in next generation sequencing data.
PMID:25348035
Control of mammalian retrotransposons by cellular RNA processing activities.
PMID:25346866
iDoComp: a compression scheme for assembled genomes.
PMID:25344501
Ovarian cancer biomarker discovery based on genomic approaches.
PMID:25337559
The evolution of comparative genomics.
PMID:25333060
A pilot study of angiotensin converting enzyme (ACE) genotype and return of spontaneous circulation following out-of-hospital cardiac arrest.
PMID:25332829
Hydrophobicity and aromaticity are primary factors shaping variation in amino acid usage of chicken proteome.
PMID:25329059
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.
PMID:25327137
Widespread contribution of transposable elements to the innovation of gene regulatory networks.
PMID:25319995
The impact of transposable elements in genome evolution and genetic instability and their implications in various diseases.
PMID:25317108
Deep sequencing reveals low incidence of endogenous LINE-1 retrotransposition in human induced pluripotent stem cells.
PMID:25289675
An evaluation of regulatory and commercial barriers to stratified medicine development and adoption.
PMID:25287070
Multiple Mechanisms Contribute To Telomere Maintenance.
PMID:25285314
Genetic networks governing heart development.
PMID:25280899
Retrotransposon-based profiling of mammalian epigenomes: DNA methylation of IAP LTRs in embryonic stem, somatic and cancer cells.
PMID:25277721
LINE-1 hypomethylation in blood and tissue samples as an epigenetic marker for cancer risk: a systematic review and meta-analysis.
PMID:25275447
Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes.
PMID:25275320
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
PMID:25274305
Proliferation of endogenous retroviruses in the early stages of a host germ line invasion.
PMID:25261407
Hybrid and rogue kinases encoded in the genomes of model eukaryotes.
PMID:25255313
Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives.
PMID:25254202
Comprehensive analysis of mutually exclusive alternative splicing in C. elegans.
PMID:25254147
ARYANA: Aligning Reads by Yet Another Approach.
PMID:25252881
A comprehensive transcriptomic analysis of infant and adult mouse ovary.
PMID:25251848
Analysis of the role of homology arms in gene-targeting vectors in human cells.
PMID:25250686
Genome-wide and single-cell analyses reveal a context dependent relationship between CBP recruitment and gene expression.
PMID:25249627
SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age.
PMID:25247314
Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination.
PMID:25246103
The scaffold protein Nde1 safeguards the brain genome during S phase of early neural progenitor differentiation.
PMID:25245017
Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies.
PMID:25239376
Function and dynamics of macromolecular complexes explored by integrative structural and computational biology.
PMID:25238653
Molecular characterization of common fragile sites as a strategy to discover cancer susceptibility genes.
PMID:25231336
Rolling-circle transposons catalyze genomic innovation in a mammalian lineage.
PMID:25223768
Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms.
PMID:25222008
Human serotonin receptor 5-HT(1A) preferentially segregates to the liquid disordered phase in synthetic lipid bilayers.
PMID:25211019
Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency.
PMID:25211013
We are all individuals... bioinformatics in the personalized medicine era.
PMID:25204962
Direct binding of the Alu binding protein dimer SRP9/14 to 40S ribosomal subunits promotes stress granule formation and is regulated by Alu RNA.
PMID:25200073
The evolution of tyrosine-recombinase elements in Nematoda.
PMID:25197791
Evidence for the persistence of an active endogenous retrovirus (ERVE) in humans.
PMID:25192754
Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies.
PMID:25192061
Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.
PMID:25188499
Recruitment of Yoruba families from Nigeria for genetic research: experience from a multisite keloid study.
PMID:25182071
Prenatal maternal immune activation causes epigenetic differences in adolescent mouse brain.
PMID:25180573
Open access data sharing in genomic research.
PMID:25178093
Microsatellite-centromere mapping in common carp through half-tetrad analysis in diploid meiogynogenetic families.
PMID:25171918
The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.
PMID:25171416
Genomic Variation: Lessons Learned from Whole-Genome CNV Analysis.
PMID:25152847
LINEs and SINEs of primate evolution.
PMID:25147443
Potential for genomic instability associated with retrotranspositionally-incompetent L1 loci.
PMID:25143528
Relating gene expression evolution with CpG content changes.
PMID:25142157
The lncRNA-MYC regulatory network in cancer.
PMID:25139102
Epidemiological studies of esophageal cancer in the era of genome-wide association studies.
PMID:25133033
Current status of predictive biomarkers for neoadjuvant therapy in esophageal cancer.
PMID:25133032
Environmental alterations of epigenetics prior to the birth.
PMID:25131541
Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing.
PMID:25129063
Decreased LINE-1 methylation levels in aldosterone-producing adenoma.
PMID:25120789
Transcriptome analysis of red swamp crawfish Procambarus clarkii reveals genes involved in gonadal development.
PMID:25118947
A comprehensive reference transcriptome resource for the common house spider Parasteatoda tepidariorum.
PMID:25118601
A long non-coding RNA is required for targeting centromeric protein A to the human centromere.
PMID:25117489
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma.
PMID:25114248
In silico modeling of human α2C-adrenoreceptor interaction with filamin-2.
PMID:25110951
TGF- β: an important mediator of allergic disease and a molecule with dual activity in cancer development.
PMID:25110717
Current technologies to identify protein kinase substrates in high throughput.
PMID:25110472
Discovery of modulators of HIV-1 infection from the human peptidome.
PMID:25110191
LINE-1 retrotransposons: from 'parasite' sequences to functional elements.
PMID:25106509
Environmental bacteriophages: viruses of microbes in aquatic ecosystems.
PMID:25104950
Histidine kinases mediate differentiation, stress response, and pathogenicity in Magnaporthe oryzae.
PMID:25103193
Drafts of the human proteome.
PMID:25101745
The structure and retrotransposition mechanism of LTR-retrotransposons in the asexual yeast Candida albicans.
PMID:25101670
Validation of high throughput sequencing and microbial forensics applications.
PMID:25101166
Generation of physical map contig-specific sequences.
PMID:25101119
Improved sensitivity to detect recombination using qPCR for Dyskeratosis Congenita PGD.
PMID:25099625
Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential.
PMID:25097266
A high resolution map of mammalian X chromosome fragile regions assessed by large-scale comparative genomics.
PMID:25086724
LIA4 encodes a chromoshadow domain protein required for genomewide DNA rearrangements in Tetrahymena thermophila.
PMID:25084866
Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes.
PMID:25082706
The DNA methylation landscape of human early embryos.
PMID:25079557
Mammalian piRNAs: Biogenesis, function, and mysteries.
PMID:25077039
The quality of methods reporting in parasitology experiments.
PMID:25076044
Periodontal microbiology--the lid's off the box again.
PMID:25074493
Insulin as a Bridge between Type 2 Diabetes and Alzheimer Disease - How Anti-Diabetics Could be a Solution for Dementia.
PMID:25071725
The dynamic exome: acquired variants as individuals age.
PMID:25063753
Microarray analysis reveals global modulation of endogenous retroelement transcription by microbes.
PMID:25063042
Expression and detection of LINE-1 ORF-encoded proteins.
PMID:25054082
Survey on knowledge, attitudes, and training needs of Italian residents on genetic tests for hereditary breast and colorectal cancer.
PMID:25050348
Heteromerization of GPR55 and cannabinoid CB2 receptors modulates signalling.
PMID:25048571
Genomic data integration for ecological and evolutionary traits in non-model organisms.
PMID:25047861
Functional repeat-derived RNAs often originate from retrotransposon-propagated ncRNAs.
PMID:25045147
Transcriptome analysis reveals a dynamic and differential transcriptional response to sulforaphane in normal and prostate cancer cells and suggests a role for Sp1 in chemoprevention.
PMID:25044704
Noncoding RNAs and the borders of heterochromatin.
PMID:25044367
De novo LINE-1 retrotransposition in HepG2 cells preferentially targets gene poor regions of chromosome 13.
PMID:25043885
Unraveling recombination rate evolution using ancestral recombination maps.
PMID:25043668
Parallel universes of Black Six biology.
PMID:25038798
The common marmoset genome provides insight into primate biology and evolution.
PMID:25038751
Larger mammalian body size leads to lower retroviral activity.
PMID:25033295
Effective automated feature construction and selection for classification of biological sequences.
PMID:25033270
Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes.
PMID:25033203
Data integration in the era of omics: current and future challenges.
PMID:25032990
G-protein βγ subunit dimers modulate kidney repair after ischemia-reperfusion injury in rats.
PMID:25028481
Novel diet-related mouse model of colon cancer parallels human colon cancer.
PMID:25024814
Cutting edge: An antibody recognizing ancestral endogenous virus glycoproteins mediates antibody-dependent cellular cytotoxicity on HIV-1-infected cells.
PMID:25024383
Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression.
PMID:25018785
Conventional and genetic talent identification in sports: will recent developments trace talent?
PMID:25015477
Transcriptional landscape of repetitive elements in normal and cancer human cells.
PMID:25012247
Fine mapping and functional studies of risk variants for type 1 diabetes at chromosome 16p13.13.
PMID:25008175
Emerging role of long non-coding RNA SOX2OT in SOX2 regulation in breast cancer.
PMID:25006803
Mobile DNA elements in the generation of diversity and complexity in the brain.
PMID:25005482
High-throughput targeted repeat element bisulfite sequencing (HT-TREBS): genome-wide DNA methylation analysis of IAP LTR retrotransposon.
PMID:25003790
Expanding the computational toolbox for mining cancer genomes.
PMID:25001846
A cross-sectional study of global DNA methylation and risk of colorectal adenoma.
PMID:24998982
Exome sequencing from nanogram amounts of starting DNA: comparing three approaches.
PMID:24992588
Bioinformatics education--perspectives and challenges out of Africa.
PMID:24990350
Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps.
PMID:24989859
Coherent somatic mutation in autoimmune disease.
PMID:24988487
Human endogenous retrovirus-K(II) envelope induction protects neurons during HIV/AIDS.
PMID:24988390
Chimpanzee-specific endogenous retrovirus generates genomic variations in the chimpanzee genome.
PMID:24987855
eMERGEing progress in genomics-the first seven years.
PMID:24987407
Similarities and differences between exome sequences found in a variety of tissues from the same individual.
PMID:24984015
Tandem repeats and G-rich sequences are enriched at human CNV breakpoints.
PMID:24983241
Systems biology in the context of big data and networks.
PMID:24982882
Prenatal exposure to mixtures of xenoestrogens and repetitive element DNA methylation changes in human placenta.
PMID:24980756
DNA methylation, microRNAs, and their crosstalk as potential biomarkers in hepatocellular carcinoma.
PMID:24976726
Insertional hypermutation in mineral oil-induced plasmacytomas.
PMID:24975032
Whole-genome sequence variation, population structure and demographic history of the Dutch population.
PMID:24974849
Population distribution analyses reveal a hierarchy of molecular players underlying parallel endocytic pathways.
PMID:24971745
Alu and LINE-1 hypomethylation is associated with HER2 enriched subtype of breast cancer.
PMID:24971511
Panning for Long Noncoding RNAs.
PMID:24970166
Comparative studies of vertebrate Beta integrin genes and proteins: ancient genes in vertebrate evolution.
PMID:24970121
Reviving the dead: history and reactivation of an extinct l1.
PMID:24968166
A de novo genome assembly algorithm for repeats and nonrepeats.
PMID:24967398
Spy: a new group of eukaryotic DNA transposons without target site duplications.
PMID:24966181
The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.
PMID:24965500
Returning individual research results for genome sequences of pancreatic cancer.
PMID:24963353
Epigenetic heredity of human height.
PMID:24963031
BLAT-based comparative analysis for transposable elements: BLATCAT.
PMID:24959585
The Role of the Transmembrane RING Finger Proteins in Cellular and Organelle Function.
PMID:24957874
Mobile elements and viral integrations prompt considerations for bacterial DNA integration as a novel carcinogen.
PMID:24956175
Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana.
PMID:24954583
Applications of RNA interference high-throughput screening technology in cancer biology and virology.
PMID:24952721
Biochemical and bioinformatic methods for elucidating the role of RNA-protein interactions in posttranscriptional regulation.
PMID:24951655
Epigenetic regulation of persistent pain.
PMID:24948399
Nicotine and oxidative stress induced exomic variations are concordant and overrepresented in cancer-associated genes.
PMID:24947164
The strength of the strongest ties in collaborative problem solving.
PMID:24946798
Digital genotyping of macrosatellites and multicopy genes reveals novel biological functions associated with copy number variation of large tandem repeats.
PMID:24945355
PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator.
PMID:24939934
Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.
PMID:24939910
Obstacles and opportunities for the future of genomic medicine.
PMID:24936509
Overexpression of piRNA pathway genes in epithelial ovarian cancer.
PMID:24932571
Sequencing your genome: what does it mean?
PMID:24932355
No effect of weight loss on LINE-1 methylation levels in peripheral blood leukocytes from postmenopausal overweight women.
PMID:24930817
Effective suppression of dengue virus using a novel group-I intron that induces apoptotic cell death upon infection through conditional expression of the Bax C-terminal domain.
PMID:24927852
Whole genome wide expression profiles on germination of Verticillium dahliae microsclerotia.
PMID:24927478
LINE-1 hypomethylation is associated with the risk of coronary heart disease in Chinese population.
PMID:24918913
Identification of candidate long non-coding RNAs in response to myocardial infarction.
PMID:24917243
Structured RNAs and synteny regions in the pig genome.
PMID:24917120
Discovering functional DNA elements using population genomic information: a proof of concept using human mtDNA.
PMID:24916662
Regulation of L1 expression and retrotransposition by melatonin and its receptor: implications for cancer risk associated with light exposure at night.
PMID:24914052
The mechanistic role of DNA methylation in myeloid leukemogenesis.
PMID:24913729
Transposable elements in cancer as a by-product of stress-induced evolvability.
PMID:24910642
Last-gen nostalgia: a lighthearted rant and reflection on genome sequencing culture.
PMID:24904646
Using semantic web technologies to annotate and align microarray designs.
PMID:24904201
A bioinformatic and computational study of myosin phosphatase subunit diversity.
PMID:24898838
Genome at juncture of early human migration: a systematic analysis of two whole genomes and thirteen exomes from Kuwaiti population subgroup of inferred Saudi Arabian tribe ancestry.
PMID:24896259
Exome sequencing: new insights into lipoprotein disorders.
PMID:24893940
Protein-protein interactions and genetic diseases: The interactome.
PMID:24892209
Human endogenous retrovirus K and cancer: Innocent bystander or tumorigenic accomplice?
PMID:24890612
Simple sequence repeats in the national longitudinal study of adolescent health: an ethnically diverse resource for genetic analysis of health and behavior.
PMID:24890516
Origin of spliceosomal introns and alternative splicing.
PMID:24890509
Interpreting human genetic variation with in vivo zebrafish assays.
PMID:24887202
Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.
PMID:24885064
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity.
PMID:24884953
XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons.
PMID:24884593
Population genetic analysis of bi-allelic structural variants from low-coverage sequence data with an expectation-maximization algorithm.
PMID:24884587
Physiology of the read-write genome.
PMID:24882816
Heterochromatin controls γH2A localization in Neurospora crassa.
PMID:24879124
Prediction of bacterial microRNAs and possible targets in human cell transcriptome.
PMID:24871974
Human genetic variation and Parkinson's disease.
PMID:24868370
microRNAs and Alu elements in the p53-Mdm2-Mdm4 regulatory network.
PMID:24868102
Pharmacogenomics: Current State-of-the-Art.
PMID:24865298
Elevated HERV-K mRNA expression in PBMC is associated with a prostate cancer diagnosis particularly in older men and smokers.
PMID:24858205
HeteroGenome: database of genome periodicity.
PMID:24857969
An enhancer polymorphism at the cardiomyocyte intercalated disc protein NOS1AP locus is a major regulator of the QT interval.
PMID:24857694
Targeting polycomb to pericentric heterochromatin in embryonic stem cells reveals a role for H2AK119u1 in PRC2 recruitment.
PMID:24857660
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs.
PMID:24850885
Rapid evolution of piRNA pathway in the teleost fish: implication for an adaptation to transposon diversity.
PMID:24846630
APOBEC3A deaminates transiently exposed single-strand DNA during LINE-1 retrotransposition.
PMID:24843014
Repetitive genomic elements and overall DNA methylation changes in acute myeloid and childhood B-cell lymphoblastic leukemia patients.
PMID:24841671
The birth and development of the DNA theory of inheritance: sixty years since the discovery of the structure of DNA.
PMID:24840850
Blood from 'junk': the LTR chimeric transcript Pu.2 promotes erythropoiesis.
PMID:24839466
CtIP maintains stability at common fragile sites and inverted repeats by end resection-independent endonuclease activity.
PMID:24837675
Understanding the Dynamics of Gene Regulatory Systems; Characterisation and Clinical Relevance of cis-Regulatory Polymorphisms.
PMID:24832652
Genotyping-by-Sequencing in Plants.
PMID:24832503
Analysis of horse genomes provides insight into the diversification and adaptive evolution of karyotype.
PMID:24828444
Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.
PMID:24823667
Global and local competition between exogenously introduced microRNAs and endogenously expressed microRNAs.
PMID:24823356
Identification of Horizontally-transferred Genomic Islands and Genome Segmentation Points by Using the GC Profile Method.
PMID:24822029
A Brief Review: The Z-curve Theory and its Application in Genome Analysis.
PMID:24822026
Changes in Membrane Cholesterol Differentially Influence Preferential and Non-preferential Signaling of the M1 and M3 Muscarinic Acetylcholine Receptors.
PMID:24821386
Genomic landscape of human, bat, and ex vivo DNA transposon integrations.
PMID:24809961
Evaluation of novel design strategies for developing zinc finger nucleases tools for treating human diseases.
PMID:24808958
Development of rapidly evolving intron markers to estimate multilocus species trees of rodents.
PMID:24804779
Realistic artificial DNA sequences as negative controls for computational genomics.
PMID:24803667
Integrating omics technologies to study pulmonary physiology and pathology at the systems level.
PMID:24802001
Variants of a Thermus aquaticus DNA polymerase with increased selectivity for applications in allele- and methylation-specific amplification.
PMID:24800860
From Phenotype to Genotype: Enter Genomics and Transformation of Primary Health Care around the World.
PMID:24799423
Molecular tumor board: the University of California-San Diego Moores Cancer Center experience.
PMID:24797821
Epigenetic control of mobile DNA as an interface between experience and genome change.
PMID:24795749
Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.
PMID:24792918
Conserved modular domains team up to latch-open active protein kinase Cα.
PMID:24790081
Long noncoding RNA: significance and potential in skin biology.
PMID:24789873
To be or not to be: the regulation of mRNA fate as a survival strategy during mammalian hibernation.
PMID:24789358
Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics.
PMID:24785449
Developmental transcriptome analysis of human erythropoiesis.
PMID:24781209
Genetic interactions affecting human gene expression identified by variance association mapping.
PMID:24771767
Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability.
PMID:24767258
The new world of RNAs.
PMID:24764762
Using VAAST to Identify Disease-Associated Variants in Next-Generation Sequencing Data.
PMID:24763993
Global hypomethylation and promoter methylation in small intestinal neuroendocrine tumors: an in vivo and in vitro study.
PMID:24762809
Microfluidic bead suspension hopper.
PMID:24761972
Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.
PMID:24760698
Protein-centric N-glycoproteomics analysis of membrane and plasma membrane proteins.
PMID:24754784
Defining functional DNA elements in the human genome.
PMID:24753594
A novel tRNA variable number tandem repeat at human chromosome 1q23.3 is implicated as a boundary element based on conservation of a CTCF motif in mouse.
PMID:24753417
An expanding universe of the non-coding genome in cancer biology.
PMID:24747961
The enemy within: endogenous retroelements and autoimmune disease.
PMID:24747712
Towards a molecular systems model of coronary artery disease.
PMID:24743898
Transcription-associated R-loop formation across the human FMR1 CGG-repeat region.
PMID:24743386
Revitalizing personalized medicine: respecting biomolecular complexities beyond gene expression.
PMID:24739991
DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos.
PMID:24736841
Long-read sequencing of chicken transcripts and identification of new transcript isoforms.
PMID:24736250
Species-specific alternative splicing leads to unique expression of sno-lncRNAs.
PMID:24734784
Matrix and backstage: cellular substrates for viral vaccines.
PMID:24732259
Germline variation in cancer-susceptibility genes in a healthy, ancestrally diverse cohort: implications for individual genome sequencing.
PMID:24728327
A quick guide to genomics and bioinformatics training for clinical and public audiences.
PMID:24722068
A short guide to long non-coding RNA gene nomenclature.
PMID:24716852
Genetics of polycystic ovary syndrome.
PMID:24715512
Chromatin Organization by Repetitive Elements (CORE): A Genomic Principle for the Higher-Order Structure of Chromosomes.
PMID:24710208
A reverse transcriptase-dependent mechanism is essential for murine preimplantation development.
PMID:24710196
Next generation DNA sequencing and the future of genomic medicine.
PMID:24710010
Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter.
PMID:24709859
Retrotransposition in tumors and brains.
PMID:24708615
Identifying regulatory mechanisms underlying tumorigenesis using locus expression signature analysis.
PMID:24706889
Illuminating the Transcriptome through the Genome.
PMID:24705295
Association claims in the sequencing era.
PMID:24705293
Genetics of Charcot-Marie-Tooth (CMT) Disease within the Frame of the Human Genome Project Success.
PMID:24705285
In Vivo RNAi-Based Screens: Studies in Model Organisms.
PMID:24705267
High SINE RNA Expression Correlates with Post-Transcriptional Downregulation of BRCA1.
PMID:24705161
Identifying and characterizing regulatory sequences in the human genome with chromatin accessibility assays.
PMID:24705081
A model of evolution of development based on germline penetration of new "no-junk" DNA.
PMID:24704981
Microsatellites with macro-influence in ewing sarcoma.
PMID:24704979
Transposable elements: from DNA parasites to architects of metazoan evolution.
PMID:24704977
Deep sequencing to identify the causes of viral encephalitis.
PMID:24699691
Mapping the structure and dynamics of genomics-related MeSH terms complex networks.
PMID:24699262
A LINE-1 insertion in DLX6 is responsible for cleft palate and mandibular abnormalities in a canine model of Pierre Robin sequence.
PMID:24699068
A brief history of macromolecular crystallography, illustrated by a family tree and its Nobel fruits.
PMID:24698025
Characteristics of the cation cotransporter NKCC1 in human brain: alternate transcripts, expression in development, and potential relationships to brain function and schizophrenia.
PMID:24695712
Transcriptional regulation of YWHAZ, the gene encoding 14-3-3ζ.
PMID:24690670
Implications of human genome structural heterogeneity: functionally related genes tend to reside in organizationally similar genomic regions.
PMID:24684786
Construction of a high-coverage bacterial artificial chromosome library and comprehensive genetic linkage map of yellowtail Seriola quinqueradiata.
PMID:24684753
Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity.
PMID:24682283
Genetic counselors' views and experiences with the clinical integration of genome sequencing.
PMID:24671342
Personalized ophthalmology.
PMID:24665880
Association studies of sporadic Parkinson's disease in the genomic era.
PMID:24653658
A first generation BAC-based physical map of the half-smooth tongue sole (Cynoglossus semilaevis) genome.
PMID:24650389
An efficient method for high-fidelity messenger RNA amplification from a small amount of total RNA.
PMID:24648903
HIV-1 interacts with human endogenous retrovirus K (HML-2) envelopes derived from human primary lymphocytes.
PMID:24648457
Technology: The $1,000 genome.
PMID:24646979
Intellectual property rights and innovation: Evidence from the human genome.
PMID:24639594
Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses.
PMID:24639520
Nuclear function of Alus.
PMID:24637839
RepARK--de novo creation of repeat libraries from whole-genome NGS reads.
PMID:24634442
Missing links in cardiology: long non-coding RNAs enter the arena.
PMID:24619481
Genome-wide signals of positive selection in human evolution.
PMID:24619126
Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development.
PMID:24618421
Multiple conserved regulatory domains promote Fezf2 expression in the developing cerebral cortex.
PMID:24618363
Accommodating the load: The transposable element content of very large genomes.
PMID:24616835
Diversity through duplication: whole-genome sequencing reveals novel gene retrocopies in the human population.
PMID:24615986
Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry.
PMID:24608367
Scanning of transposable elements and analyzing expression of transposase genes of sweet potato [Ipomoea batatas].
PMID:24608103
2013 Curt Stern Award Address.
PMID:24607386
The challenges and importance of structural variation detection in livestock.
PMID:24600474
DNA methylome in spleen of avian pathogenic Escherichia coli-challenged broilers and integration with mRNA expression.
PMID:24599154
Human-specific epigenetic variation in the immunological Leukotriene B4 Receptor (LTB4R/BLT1) implicated in common inflammatory diseases.
PMID:24598577
Human genetics' 50th anniversary issue.
PMID:24595704
Transcriptome sequencing and De Novo analysis of Youngia japonica using the illumina platform.
PMID:24595283
Data simulation in machine olfaction with the R package chemosensors.
PMID:24586410
Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes.
PMID:24581492
Deletion of Gpr128 results in weight loss and increased intestinal contraction frequency.
PMID:24574718
Constraint and opportunity in genome innovation.
PMID:24572460
Global patterns of apparent copy number variation in birds revealed by cross-species comparative genomic hybridization.
PMID:24570127
Morphine induces redox-based changes in global DNA methylation and retrotransposon transcription by inhibition of excitatory amino acid transporter type 3-mediated cysteine uptake.
PMID:24569088
Epigenetics in the pathogenesis of rheumatoid arthritis.
PMID:24568138
Epigenetic modification, dehydration, and molecular crowding effects on the thermodynamics of i-motif structure formation from C-rich DNA.
PMID:24564458
The synthetic biology future.
PMID:24561910
Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer.
PMID:24553397
Variation, evolution, and correlation analysis of C+G content and genome or chromosome size in different kingdoms and phyla.
PMID:24551092
GATA5 CpG island hypermethylation is an independent predictor for poor clinical outcome in renal cell carcinoma.
PMID:24549248
Sequencing, assembling, and correcting draft genomes using recombinant populations.
PMID:24531727
An Introduction to Functional Genomics and Systems Biology.
PMID:24527360
Point-of-care technologies for molecular diagnostics using a drop of blood.
PMID:24525172
Genome-guided transcriptome assembly in the age of next-generation sequencing.
PMID:24524156
Prediction and classification of ncRNAs using structural information.
PMID:24521294
Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene function.
PMID:24516395
Endogenous retroviruses and the development of cancer.
PMID:24511094
Divergent and dynamic activity of endogenous retroviruses in burn patients and their inflammatory potential.
PMID:24509167
Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function.
PMID:24502763
A simple method for gene phasing using mate pair sequencing.
PMID:24502676
Small-molecule probes elucidate global enzyme activity in a proteomic context.
PMID:24499666
A new genome-wide method to track horizontally transferred sequences: application to Drosophila.
PMID:24497602
Twenty-first century science as a relational process: from eureka! to team science and a place for community psychology.
PMID:24496718
An antisense promoter in mouse L1 retrotransposon open reading frame-1 initiates expression of diverse fusion transcripts and limits retrotransposition.
PMID:24493738
Comparing DNA integration site clusters with scan statistics.
PMID:24489369
Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle.
PMID:24487278
Nuclear architecture as an epigenetic regulator of neural development and function.
PMID:24486963
Finding the missing honey bee genes: lessons learned from a genome upgrade.
PMID:24479613
A new biophysical metric for interrogating the information content in human genome sequence variation: Proof of concept.
PMID:24478921
Genome-scale analysis of demographic history and adaptive selection.
PMID:24474201
Trans-activation, post-transcriptional maturation, and induction of antibodies to HERV-K (HML-2) envelope transmembrane protein in HIV-1 infection.
PMID:24472118
Significant overlap between human genome-wide association-study nominated breast cancer risk alleles and rat mammary cancer susceptibility loci.
PMID:24467842
Long non-coding RNA H19 promotes glioma cell invasion by deriving miR-675.
PMID:24466011
Neurofilament Heavy polypeptide CpG island methylation associates with prognosis of renal cell carcinoma and prediction of antivascular endothelial growth factor therapy response.
PMID:24464810
Alu- and 7SL RNA Analogues Suppress MCF-7 Cell Viability through Modulating the Transcription of Endoplasmic Reticulum Stress Response Genes.
PMID:24455187
Diversity of human tRNA genes from the 1000-genomes project.
PMID:24448271
An empirically informed critique of Habermas' argument from human nature.
PMID:24446150
Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals.
PMID:24438357
Effects of short-term exposure to inhalable particulate matter on DNA methylation of tandem repeats.
PMID:24436168
The emerging molecular architecture of schizophrenia, polygenic risk scores and the clinical implications for GxE research.
PMID:24435092
Sequencing depth and coverage: key considerations in genomic analyses.
PMID:24434847
The first draft of the pigeonpea genome sequence.
PMID:24431589
Whole genome sequence of a Turkish individual.
PMID:24416366
Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.
PMID:24410833
Post-genomics nanotechnology is gaining momentum: nanoproteomics and applications in life sciences.
PMID:24410486
Horizontal gene transfer in the acquisition of novel traits by metazoans.
PMID:24403327
A computational framework to infer human disease-associated long noncoding RNAs.
PMID:24392133
An absolute index (Ab-index) to measure a researcher's useful contributions and productivity.
PMID:24391941
Community-Based Participatory Research and Gene-Environment Interaction Methodologies Addressing Environmental Justice among Migrant and Seasonal Farmworker Women and Children in Texas: "From Mother to Child Project".
PMID:24391476
Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum.
PMID:24377353
DIAMUND: direct comparison of genomes to detect mutations.
PMID:24375697
Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.
PMID:24373511
Mutation discovery for Mendelian traits in non-laboratory animals: a review of achievements up to 2012.
PMID:24372556
RNase L restricts the mobility of engineered retrotransposons in cultured human cells.
PMID:24371271
APOBEC3G oligomerization is associated with the inhibition of both Alu and LINE-1 retrotransposition.
PMID:24367644
(13)C NMR spectroscopy applications to brain energy metabolism.
PMID:24367329
Zinc and the aging brain.
PMID:24366781
Increased seroreactivity to HERV-K10 peptides in patients with HTLV myelopathy.
PMID:24365054
Life cycle of an n-globin pseudogene microsatellite locus.
PMID:24363661
A novel null homozygous mutation confirms CACNA2D2 as a gene mutated in epileptic encephalopathy.
PMID:24358150
Next generation 1536-well oligonucleotide synthesizer with on-the-fly dispense.
PMID:24355807
A novel recombinant retrovirus in the genomes of modern birds combines features of avian and mammalian retroviruses.
PMID:24352464
Identification and biochemical characterization of protein phosphatase 5 from the cantharidin-producing blister beetle, Epicauta chinensis.
PMID:24351830
CrossMap: a versatile tool for coordinate conversion between genome assemblies.
PMID:24351709
A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes.
PMID:24347612
A tumor-promoting mechanism mediated by retrotransposon-encoded reverse transcriptase is active in human transformed cell lines.
PMID:24345856
Differential inhibition of LINE1 and LINE2 retrotransposition by vertebrate AID/APOBEC proteins.
PMID:24344916
De novo assembly of a field isolate genome reveals novel Plasmodium vivax erythrocyte invasion genes.
PMID:24340114
Comparative genomic analysis of eutherian ribonuclease A genes.
PMID:24337645
The population history of endogenous retroviruses in mule deer (Odocoileus hemionus).
PMID:24336966
An age-of-allele test of neutrality for transposable element insertions.
PMID:24336751
Concepts of tissue injury and cell death in inflammation: a historical perspective.
PMID:24336099
Genome sequencing: a systematic review of health economic evidence.
PMID:24330507
Characterization of L1 ORF1p self-interaction and cellular localization using a mammalian two-hybrid system.
PMID:24324740
Students' perspective on genomics: from sample to sequence using the case study of blueberry.
PMID:24324481
DNA transposon-based gene vehicles - scenes from an evolutionary drive.
PMID:24320156
The roles of genetic polymorphisms and human immunodeficiency virus infection in lipid metabolism.
PMID:24319689
Structural features and mechanism of translocation of non-LTR retrotransposons in Candida albicans.
PMID:24317340
The Vertebrate Genome Annotation browser 10 years on.
PMID:24316575
Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment.
PMID:24314227
Enhancing systems medicine beyond genotype data by dynamic patient signatures: having information and using it too.
PMID:24312119
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.
PMID:24306534
Genetic and epigenetic determinants mediate proneness of oncogene breakpoint sites for involvement in TCR translocations.
PMID:24304972
Detection limit of intragenic deletions with targeted array comparative genomic hybridization.
PMID:24304607
Influence of age, sex and genetic factors on the human brain.
PMID:24297733
Comparative genomics of oral isolates of Streptococcus mutans by in silico genome subtraction does not reveal accessory DNA associated with severe early childhood caries.
PMID:24291226
Rapid and inexpensive screening of genomic copy number variations using a novel quantitative fluorescent PCR method.
PMID:24288428
L1 retrotransposons, cancer stem cells and oncogenesis.
PMID:24286172
Molecular versatility: the many faces and functions of noncoding RNA.
PMID:24281974
Not so pseudo anymore: pseudogenes as therapeutic targets.
PMID:24279857
Alu mobile elements: from junk DNA to genomic gems.
PMID:24278713
Genome-scale technology driven advances to research into normal and malignant haematopoiesis.
PMID:24278696
Whole genome sequencing of field isolates reveals a common duplication of the Duffy binding protein gene in Malagasy Plasmodium vivax strains.
PMID:24278487
DNA sequences at a glance.
PMID:24278218
DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis.
PMID:24278031
Stable RNA nanoparticles as potential new generation drugs for cancer therapy.
PMID:24270010
Systematic classification of non-coding RNAs by epigenomic similarity.
PMID:24267974
Role of pathogens in multiple sclerosis.
PMID:24266364
Associations between serum perfluoroalkyl acids and LINE-1 DNA methylation.
PMID:24263140
Microbial diversity in the era of omic technologies.
PMID:24260747
Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response.
PMID:24254230
InvFEST, a database integrating information of polymorphic inversions in the human genome.
PMID:24253300
LINE-1 activation and epigenetic silencing of suppressor genes in cancer: Causally related events?
PMID:24251074
Domesticated transposable element gene products in human cancer.
PMID:24251072
Association and differentiation of MHC class I and II polymorphic Alu insertions and HLA-A, -B, -C and -DRB1 alleles in the Chinese Han population.
PMID:24248811
Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden Markov model sequence profiles.
PMID:24246499
Identification of significant features in DNA microarray data.
PMID:24244802
Linear decay of retrotransposon antisense bias across genes is contingent upon tissue specificity.
PMID:24244495
Retrotransposon silencing during embryogenesis: dicer cuts in LINE.
PMID:24244199
A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.
PMID:24243933
Deorphanizing the human transmembrane genome: A landscape of uncharacterized membrane proteins.
PMID:24241348
Human heart failure: is cell therapy a valid option?
PMID:24239645
Functional microRNAs and target sites are created by lineage-specific transposition.
PMID:24234653
Epigenetic regulation by long noncoding RNAs in plants.
PMID:24233054
Increased expression and copy number amplification of LINE-1 and SINE B1 retrotransposable elements in murine mammary carcinoma progression.
PMID:24231191
STaRRRT: a table of short tandem repeats in regulatory regions of the human genome.
PMID:24228761
Metabolic mechanisms of epigenetic regulation.
PMID:24228614
Epigenetic status of LINE-1 predicts clinical outcome in early-stage rectal cancer.
PMID:24220694
Identification of three new Alu Yb subfamilies by source tracking of recently integrated Alu Yb elements.
PMID:24216009
Discovery of recurrent structural variants in nasopharyngeal carcinoma.
PMID:24214394
Epigenomic elements enriched in the promoters of autoimmunity susceptibility genes.
PMID:24213554
The nature of nurture: refining the definition of the exposome.
PMID:24213143
Cancer genome sequencing and its implications for personalized cancer vaccines.
PMID:24213133
Retrotransposon-encoded reverse transcriptase in the genesis, progression and cellular plasticity of human cancer.
PMID:24212657
Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.
PMID:24211518
Classification of α-helical membrane proteins using predicted helix architectures.
PMID:24204844
Condensin II subunit dCAP-D3 restricts retrotransposon mobilization in Drosophila somatic cells.
PMID:24204294
The role of transposable elements in health and diseases of the central nervous system.
PMID:24198348
Exome sequencing: one small step for malignant hyperthermia, one giant step for our specialty--why exome sequencing matters to all of us, not just the experts.
PMID:24195944
Non-LTR retrotransposons and microsatellites: Partners in genomic variation.
PMID:24195012
A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion.
PMID:24190946
Perspective: a systems approach to diabetes research.
PMID:24187547
DNA methylation profiling in X;autosome translocations supports a role for L1 repeats in the spread of X chromosome inactivation.
PMID:24186870
Review: Alternative Splicing (AS) of Genes As An Approach for Generating Protein Complexity.
PMID:24179441
Complexity of the alternative splicing landscape in plants.
PMID:24179125
A 129-kb deletion on chromosome 12 confers substantial protection against rheumatoid arthritis, implicating the gene SLC2A3.
PMID:24178905
The genomics of schizophrenia: update and implications.
PMID:24177465
Intronic deletions in the SLC34A3 gene: a cautionary tale for mutation analysis of hereditary hypophosphatemic rickets with hypercalciuria.
PMID:24176905
Old world monkeys and new age science: the evolution of nonhuman primate systems virology.
PMID:24174440
Improving genome assemblies and annotations for nonhuman primates.
PMID:24174438
Genetic and molecular alterations in pancreatic cancer: implications for personalized medicine.
PMID:24172537
Functional transcriptomics in the post-ENCODE era.
PMID:24172201
Gene regulation by non-coding RNAs.
PMID:24164576
An emerging place for lung cancer genomics in 2013.
PMID:24163742
Mutagenesis and phenotyping resources in zebrafish for studying development and human disease.
PMID:24162064
Intron retention in the alternatively spliced region of RON results from weak 3' splice site recognition.
PMID:24155930
Differential L1 regulation in pluripotent stem cells of humans and apes.
PMID:24153179
Potential Antibacterial Targets in Bacterial Central Metabolism.
PMID:24151543
Clinical implications of the LINE-1 methylation levels in patients with gastrointestinal cancer.
PMID:24150097
The challenges, advantages and future of phenome-wide association studies.
PMID:24147732
A review of bacteria-animal lateral gene transfer may inform our understanding of diseases like cancer.
PMID:24146634
Next-generation sequencing for mitochondrial disorders.
PMID:24138576
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
PMID:24136355
Human genome replication proceeds through four chromatin states.
PMID:24130466
Lessons from postgenome-wide association studies: functional analysis of cancer predisposition loci.
PMID:24127939
Structure and Expression Analyses of SVA Elements in Relation to Functional Genes.
PMID:24124410
Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients.
PMID:24114970
Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome.
PMID:24113537
De novo identification of VRC01 class HIV-1-neutralizing antibodies by next-generation sequencing of B-cell transcripts.
PMID:24106303
Cancer genomics identifies disrupted epigenetic genes.
PMID:24104525
"Conferring authorship": biobank stakeholders' experiences with publication credit in collaborative research.
PMID:24098803
A novel actin mRNA splice variant regulates ACTG1 expression.
PMID:24098136
Exploring mechanisms of human disease through structurally resolved protein interactome networks.
PMID:24096645
Transposable elements and their potential role in complex lung disorder.
PMID:24093510
BLUEPRINT: mapping human blood cell epigenomes.
PMID:24091925
LINE-1 retrotransposable element DNA accumulates in HIV-1-infected cells.
PMID:24089548
Guanine holes are prominent targets for mutation in cancer and inherited disease.
PMID:24086153
Alu elements: an intrinsic source of human genome instability.
PMID:24080407
Utilization of transposable element mPing as a novel genetic tool for modification of the stress response in rice.
PMID:24078785
Mapping human epigenomes.
PMID:24074860
Mass fingerprinting of complex mixtures: protein inference from high-resolution peptide masses and predicted retention times.
PMID:24074221
Transcriptome profile of the green odorous frog (Odorrana margaretae).
PMID:24073255
Lineage-specific duplications of Muroidea Faim and Spag6 genes and atypical accelerated evolution of the parental Spag6 gene.
PMID:24071998
Contamination of live attenuated vaccines with an infectious feline endogenous retrovirus (RD-114 virus).
PMID:24068581
Punctuated emergences of genetic and phenotypic innovations in eumetazoan, bilaterian, euteleostome, and hominidae ancestors.
PMID:24065732
Splicing and alternative splicing in rice and humans.
PMID:24064058
Association of endogenous retroviruses and long terminal repeats with human disorders.
PMID:24062987
The genetics of NAFLD.
PMID:24061205
Information measure for long-range correlated sequences: the case of the 24 human chromosomes.
PMID:24056670
DNA sequencing methods in human genetics and disease research.
PMID:24049638
Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline.
PMID:24045705
The Human Genome Project: big science transforms biology and medicine.
PMID:24040834
In vitro screening for compounds that enhance human L1 mobilization.
PMID:24040300
Proteasome inhibitors block DNA repair and radiosensitize non-small cell lung cancer.
PMID:24040035
Long non-coding RNAs and complex human diseases.
PMID:24036441
Modulation of LINE-1 and Alu/SVA retrotransposition by Aicardi-Goutières syndrome-related SAMHD1.
PMID:24035396
LINEs of evidence: noncanonical DNA replication as an epigenetic determinant.
PMID:24034780
Genotyping of human neutrophil antigens (HNA) from whole genome sequencing data.
PMID:24028078
CFTR activity and mitochondrial function.
PMID:24024153
Insights into the loblolly pine genome: characterization of BAC and fosmid sequences.
PMID:24023741
The relationship between gene isoform multiplicity, number of exons and protein divergence.
PMID:24023641
Massively parallel sequencing: the new frontier of hematologic genomics.
PMID:24021669
From helix to hematology: introduction to a collection of reviews on the emerging role of next-generation sequencing in hematology.
PMID:24016460
Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS.
PMID:24015873
Lizards and LINEs: selection and demography affect the fate of L1 retrotransposons in the genome of the green anole (Anolis carolinensis).
PMID:24013105
Splice variants of zinc finger protein 695 mRNA associated to ovarian cancer.
PMID:24007497
Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era.
PMID:24007365
Population genetics and molecular evolution of DNA sequences in transposable elements. I. A simulation framework.
PMID:24002643
Effect of heavy metals on silencing of engineered long interspersed element-1 retrotransposon in nondividing neuroblastoma cell line.
PMID:23999712
The MaSuRCA genome assembler.
PMID:23990416
Population genomics of cardiometabolic traits: design of the University College London-London School of Hygiene and Tropical Medicine-Edinburgh-Bristol (UCLEB) Consortium.
PMID:23977022
Refrex-1, a soluble restriction factor against feline endogenous and exogenous retroviruses.
PMID:23966402
Towards precision medicine: advances in computational approaches for the analysis of human variants.
PMID:23962656
Segmenting the human genome based on states of neutral genetic divergence.
PMID:23959903
Plasma S-adenosylmethionine, DNMT polymorphisms, and peripheral blood LINE-1 methylation among healthy Chinese adults in Singapore.
PMID:23957506
Use of single nucleotide polymorphism array technology to improve the identification of chromosomal lesions in leukemia.
PMID:23941516
Prolonged treatment with DNMT inhibitors induces distinct effects in promoters and gene-bodies.
PMID:23940695
Hydroquinone increases 5-hydroxymethylcytosine formation through ten eleven translocation 1 (TET1) 5-methylcytosine dioxygenase.
PMID:23940045
Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation.
PMID:23938756
Exploring the effects of immunity and life history on the dynamics of an endogenous retrovirus.
PMID:23938754
'There and back again': revisiting the pathophysiological roles of human endogenous retroviruses in the post-genomic era.
PMID:23938753
Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes.
PMID:23938751
Visualized computational predictions of transcriptional effects by intronic endogenous retroviruses.
PMID:23936536
Genistein inhibits prostate cancer cell growth by targeting miR-34a and oncogenic HOTAIR.
PMID:23936419
Mitogenomes from two uncommon haplogroups mark late glacial/postglacial expansions from the near east and neolithic dispersals within Europe.
PMID:23936216
The Profile of Human Sperm Proteome; A Mini-review.
PMID:23926502
The nuage mediates retrotransposon silencing in mouse primordial ovarian follicles.
PMID:23924633
Evaluation of genome sequencing quality in selected plant species using expressed sequence tags.
PMID:23922843
Detecting Alu insertions from high-throughput sequencing data.
PMID:23921633
Progress toward personalized medicine for glaucoma.
PMID:23914252
Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factors.
PMID:23913413
The Future of Children's Health in the Genomic Era.
PMID:23908811
The application of next-generation sequencing in the autozygosity mapping of human recessive diseases.
PMID:23907654
Locating Pb2+ and Zn2+ in zinc finger-like peptides using mass spectrometry.
PMID:23907592
Profiling the immune stromal interface in breast cancer and its potential for clinical impact.
PMID:23904829
Organelle targeting: third level of drug targeting.
PMID:23898223
Single-cell sequencing-based technologies will revolutionize whole-organism science.
PMID:23897237
Epigenetic signature and enhancer activity of the human APOE gene.
PMID:23892237
REViewer: a tool for linear visualization of repetitive elements within a sequence query.
PMID:23891933
Detecting and comparing non-coding RNAs in the high-throughput era.
PMID:23887659
Unraveling genomic variation from next generation sequencing data.
PMID:23885890
Rates and patterns of great ape retrotransposition.
PMID:23884656
Cigarette smoking and DNA methylation.
PMID:23882278
Genomics of lymphoid malignancies reveal major activation pathways in lymphocytes.
PMID:23880067
Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.
PMID:23878096
Hypomethylation of long interspersed nuclear element-1 promoter is associated with poor outcomes for curative resected hepatocellular carcinoma.
PMID:23875825
Translational genetics for diagnosis of human disorders of sex development.
PMID:23875799
A superfamily of DNA transposons targeting multicopy small RNA genes.
PMID:23874566
Lessons from next-generation sequencing analysis in hematological malignancies.
PMID:23872706
Evolution: life has evolved to evolve: comment on "How life changes itself: the Read-Write (RW) genome" by James Shapiro.
PMID:23871431
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.
PMID:23870653
Spatial localization of genes determined by intranuclear DNA fragmentation with the fusion proteins lamin KRED and histone KRED und visible light.
PMID:23869190
Generation of transgenic mice with megabase-sized human yeast artificial chromosomes by yeast spheroplast-embryonic stem cell fusion.
PMID:23868074
Global DNA methylation in a population with aflatoxin B1 exposure.
PMID:23867725
Down's syndrome, neuroinflammation, and Alzheimer neuropathogenesis.
PMID:23866266
Are human endogenous retroviruses pathogenic? An approach to testing the hypothesis.
PMID:23864388
A versatile microsatellite instability reporter system in human cells.
PMID:23861444
Dominant form of congenital hyperinsulinism maps to HK1 region on 10q.
PMID:23859901
Evolutionary age of repetitive element subfamilies and sensitivity of DNA methylation to airborne pollutants.
PMID:23855992
The sequence signature of an Ig-fold.
PMID:23842991
Periodic distribution of a putative nucleosome positioning motif in human, nonhuman primates, and archaea: mutual information analysis.
PMID:23841049
Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples.
PMID:23840181
The Mighty Mouse: the impact of rodents on advances in biomedical research.
PMID:23829104
STAU1 binding 3' UTR IRAlus complements nuclear retention to protect cells from PKR-mediated translational shutdown.
PMID:23824540
CluGene: A Bioinformatics Framework for the Identification of Co-Localized, Co-Expressed and Co-Regulated Genes Aimed at the Investigation of Transcriptional Regulatory Networks from High-Throughput Expression Data.
PMID:23823315
Homoeologous chromosomes of Xenopus laevis are highly conserved after whole-genome duplication.
PMID:23820579
Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model.
PMID:23818630
Understanding the regulatory and transcriptional complexity of the genome through structure.
PMID:23817049
Comparative genomics as a tool to understand evolution and disease.
PMID:23817047
Jenner-predict server: prediction of protein vaccine candidates (PVCs) in bacteria based on host-pathogen interactions.
PMID:23815072
Copy number variation of transposable elements in Triticum-Aegilops genus suggests evolutionary and revolutionary dynamics following allopolyploidization.
PMID:23807536
Genomic analysis of ERVWE2 locus in patients with multiple sclerosis: absence of genetic association but potential role of human endogenous retrovirus type W elements in molecular mimicry with myelin antigen.
PMID:23805135
The intertwining of transposable elements and non-coding RNAs.
PMID:23803660
Enhancers.
PMID:23801531
RNA-seq in the tetraploid Xenopus laevis enables genome-wide insight in a classic developmental biology model organism.
PMID:23792920
The impact of natural selection on health and disease: uses of the population genetics approach in humans.
PMID:23789027
Epigenetic mechanisms in fetal origins of health and disease.
PMID:23787712
Crystal structures and RNA-binding properties of the RNA recognition motifs of heterogeneous nuclear ribonucleoprotein L: insights into its roles in alternative splicing regulation.
PMID:23782695
GAT: a simulation framework for testing the association of genomic intervals.
PMID:23782611
Evolution of the correlation between expression divergence and protein divergence in mammals.
PMID:23781097
Special considerations in prognostic research in cancer involving genetic polymorphisms.
PMID:23773794
Analysis of 8 X-chromosomal markers in the population of central Croatia.
PMID:23771754
On guard: coronin proteins in innate and adaptive immunity.
PMID:23765056
QualComp: a new lossy compressor for quality scores based on rate distortion theory.
PMID:23758828
Passive and active DNA methylation and the interplay with genetic variation in gene regulation.
PMID:23755361
A comparison of 100 human genes using an alu element-based instability model.
PMID:23755193
Storage conditions and stability of global DNA methylation in placental tissue.
PMID:23750648
The role of recombination in the origin and evolution of Alu subfamilies.
PMID:23750218
Statistical analysis of pentose phosphate pathway genes from eubacteria and eukarya reveals translational selection as a major force in shaping codon usage pattern.
PMID:23750079
Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition.
PMID:23749060
Cancer epigenetics: a brief review.
PMID:23744972
Overview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseases.
PMID:23743227
Integrated platform for genome-wide screening and construction of high-density genetic interaction maps in mammalian cells.
PMID:23739767
Next-generation sequencing in genetic hearing loss.
PMID:23738631
Transposable element invasions.
PMID:23734297
Studying recombination with high-throughput sequencing: an educational primer for use with "fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome".
PMID:23733850
Expansion of the pseudo-autosomal region and ongoing recombination suppression in the Silene latifolia sex chromosomes.
PMID:23733786
Genomics and genetics in the biology of adaptation to exercise.
PMID:23733655
LINE-1 and Alu retrotransposition exhibit clonal variation.
PMID:23732044
Improved coverage and accuracy with strand-conserving sequence enrichment.
PMID:23731654
Machine learning and genome annotation: a match meant to be?
PMID:23731483
Enzymatic production of 'monoclonal stoichiometric' single-stranded DNA oligonucleotides.
PMID:23727986
The epigenetic regulator PLZF represses L1 retrotransposition in germ and progenitor cells.
PMID:23727884
Survival analysis with incomplete genetic data.
PMID:23722305
High-throughput sequencing reveals principles of adeno-associated virus serotype 2 integration.
PMID:23720718
Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections.
PMID:23720713
The role of retrotransposons in gene family expansions: insights from the mouse Abp gene family.
PMID:23718880
Expression of a LINE-1 endonuclease variant in gastric cancer: its association with clinicopathological parameters.
PMID:23718141
Alu elements in primates are preferentially lost from areas of high GC content.
PMID:23717800
ZNF408 is mutated in familial exudative vitreoretinopathy and is crucial for the development of zebrafish retinal vasculature.
PMID:23716654
Posttranscriptional regulation by RNA-binding proteins during epithelial-to-mesenchymal transition.
PMID:23715860
REAPR: a universal tool for genome assembly evaluation.
PMID:23710727
Emerging tools for synthetic genome design.
PMID:23708771
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.
PMID:23708189
Retroviruses and amyotrophic lateral sclerosis.
PMID:23707220
HPV 5 and 8 E6 expression reduces ATM protein levels and attenuates LINE-1 retrotransposition.
PMID:23706308
PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data.
PMID:23704902
Identification of a novel PNMA-MS1 gene in marsupials suggests the LTR retrotransposon-derived PNMA genes evolved differently in marsupials and eutherians.
PMID:23704700
Expression of a large LINE-1-driven antisense RNA is linked to epigenetic silencing of the metastasis suppressor gene TFPI-2 in cancer.
PMID:23703216
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.
PMID:23698863
Footprint of APOBEC3 on the genome of human retroelements.
PMID:23698293
Comparative genomic and transcriptomic analysis of tandemly and segmentally duplicated genes in rice.
PMID:23696832
Human monogenic disease genes have frequently functionally redundant paralogs.
PMID:23696728
Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles.
PMID:23696454
Rapid multiplexed genotyping of simple tandem repeats using capture and high-throughput sequencing.
PMID:23696428
On the classification of long non-coding RNAs.
PMID:23696037
ABC transporters in multidrug resistance and pharmacokinetics, and strategies for drug development.
PMID:23688078
Structural and functional annotation of the porcine immunome.
PMID:23676093
A human anti-c-Met Fab fragment conjugated with doxorubicin as targeted chemotherapy for hepatocellular carcinoma.
PMID:23675455
The specificity and flexibility of l1 reverse transcription priming at imperfect T-tracts.
PMID:23675310
Genetic variation and its role in malignancy.
PMID:23675233
Overlapping of genes in the human genome.
PMID:23675016
Information theory, gene expression, and combinatorial regulation: a quantitative analysis.
PMID:23674094
GATA simple sequence repeats function as enhancer blocker boundaries.
PMID:23673629
Molecular evolution of peptidergic signaling systems in bilaterians.
PMID:23671109
eQTL Mapping Using RNA-seq Data.
PMID:23667399
Retrotransposons: a new and credible source of inherited and somatically acquired hepatocellular carcinoma mutations.
PMID:23665280
A gene expression restriction network mediated by sense and antisense Alu sequences located on protein-coding messenger RNAs.
PMID:23663499
Multiple suboptimal solutions for prediction rules in gene expression data.
PMID:23662163
Detection of serum Alu element hypomethylation for the diagnosis and prognosis of glioma.
PMID:23657981
Multiple sclerosis: autoimmunity and viruses.
PMID:23656710
Digital quantitation of potential therapeutic target RNAs.
PMID:23656494
Sixty years of genome biology.
PMID:23651518
DNA methylation: the future of crime scene investigation?
PMID:23649761
Identification of multiple binding sites for the THAP domain of the Galileo transposase in the long terminal inverted-repeats.
PMID:23648487
Reprogramming of the HepG2 genome by long interspersed nuclear element-1.
PMID:23648019
Long noncoding RNAs in biology and hematopoiesis.
PMID:23645840
Genomic dynamics of transposable elements in the western clawed frog (Silurana tropicalis).
PMID:23645600
Genomic resources for multiple species in the Drosophila ananassae species group.
PMID:23639891
Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: environmental factors.
PMID:23638344
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs.
PMID:23637635
Role of the human endogenous retrovirus HERV-K18 in autoimmune disease susceptibility: study in the Spanish population and meta-analysis.
PMID:23634223
Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.
PMID:23629695
Systematic biases in DNA copy number originate from isolation procedures.
PMID:23618369
Genetics of coronary artery disease and myocardial infarction--2013.
PMID:23616109
Genome-wide analysis of alternative splicing during dendritic cell response to a bacterial challenge.
PMID:23613991
Sequence and structure-specific elements of HERG mRNA determine channel synthesis and trafficking efficiency.
PMID:23608144
The challenge of increasing Pfam coverage of the human proteome.
PMID:23603847
Innovations in proteomic profiling of cancers: alternative splice variants as a new class of cancer biomarker candidates and bridging of proteomics with structural biology.
PMID:23603631
The human qualities needed to complete the global eradication of polio.
PMID:23599552
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations.
PMID:23599355
Are results of targeted gene sequencing ready to be used for clinical decision making for patients with acute myelogenous leukemia?
PMID:23595294
Computational solutions for omics data.
PMID:23594911
Cancer genome-sequencing study design.
PMID:23594910
Human-specific HERV-K insertion causes genomic variations in the human genome.
PMID:23593260
Revising a personal genome by comparing and combining data from two different sequencing platforms.
PMID:23593254
Identification of optimum sequencing depth especially for de novo genome assembly of small genomes using next generation sequencing data.
PMID:23593174
Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.
PMID:23590730
Existing and emerging technologies for tumor genomic profiling.
PMID:23589546
Mathematical modeling of complex biological systems: from parts lists to understanding systems behavior.
PMID:23584751
IMACULAT - an open access package for the quantitative analysis of chromosome localization in the nucleus.
PMID:23577217
The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice.
PMID:23576519
Searching microsatellites in DNA sequences: approaches used and tools developed.
PMID:23573036
Comprehensively identifying and characterizing the missing gene sequences in human reference genome with integrated analytic approaches.
PMID:23572138
From the genetic code to neuromics.
PMID:23571821
Understanding neurological disease mechanisms in the era of epigenetics.
PMID:23571666
What contemporary viruses tell us about evolution: a personal view.
PMID:23568292
Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array.
PMID:23565757
Horizontal transfer and evolution of prokaryote transposable elements in eukaryotes.
PMID:23563966
Evolutionarily conserved long intergenic non-coding RNAs in the eye.
PMID:23562822
Impact of GC content on gene expression pattern in chicken.
PMID:23557030
Transduction-specific ATLAS reveals a cohort of highly active L1 retrotransposons in human populations.
PMID:23553801
Diversity of transposable elements and repeats in a 600 kb region of the fly Calliphora vicina.
PMID:23552491
On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain.
PMID:23550032
Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome.
PMID:23547712
Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma.
PMID:23540693
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.
PMID:23537068
Cancer epigenetics: new therapies and new challenges.
PMID:23533770
Structure prediction and analysis of DNA transposon and LINE retrotransposon proteins.
PMID:23530042
Cancer pharmacogenomics in children: research initiatives and progress to date.
PMID:23529868
GWAS in autoimmune thyroid disease: redefining our understanding of pathogenesis.
PMID:23529038
Lifeomics leads the age of grand discoveries.
PMID:23526385
Genomics in cardiovascular disease.
PMID:23524054
Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples.
PMID:23521802
Crystallization and preliminary X-ray crystallographic analysis of the human CKIP-1 pleckstrin homology domain.
PMID:23519814
Elevated rate of fixation of endogenous retroviral elements in Haplorhini TRIM5 and TRIM22 genomic sequences: impact on transcriptional regulation.
PMID:23516500
Microhomology-mediated mechanisms underlie non-recurrent disease-causing microdeletions of the FOXL2 gene or its regulatory domain.
PMID:23516377
Functional proteomics of barley and barley chloroplasts - strategies, methods and perspectives.
PMID:23515231
Decoding retinitis pigmentosa.
PMID:23514641
Significantly fewer protein functional changing variants for lipid metabolism in Africans than in Europeans.
PMID:23514131
LINE-1 and Alu hypomethylation in mucoepidermoid carcinoma.
PMID:23510117
Hunting human disease genes: lessons from the past, challenges for the future.
PMID:23504071
Genomic and epigenomic insights into nutrition and brain disorders.
PMID:23503168
The Promises and Pitfalls of Genoeconomics*.
PMID:23482589
A tale of an A-tail: The lifeline of a SINE.
PMID:23481375
The 2010 ESPEN Sir David Cuthbertson Lecture: new and old proteins: clinical implications.
PMID:23481224
Clopidogrel and warfarin pharmacogenetic tests: what is the evidence for use in clinical practice?
PMID:23478884
Increased genome instability in human DNA segments with self-chains: homology-induced structural variations via replicative mechanisms.
PMID:23474816
The hierarchy of the 3D genome.
PMID:23473598
Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities.
PMID:23469896
Genes, environments, and developmental research: methods for a multi-site study of early substance abuse.
PMID:23461817
Reduced syncytin-1 expression levels in placental syndromes correlates with epigenetic hypermethylation of the ERVW-1 promoter region.
PMID:23457515
High-throughput cloning and expression library creation for functional proteomics.
PMID:23457047
DNA methylation dynamics in blood after hematopoietic cell transplant.
PMID:23451113
Causes and implications of codon usage bias in RNA viruses.
PMID:23451064
Accurate identification and analysis of human mRNA isoforms using deep long read sequencing.
PMID:23450794
Current genomics in cardiovascular medicine.
PMID:23450299
Mercury biomarkers and DNA methylation among Michigan dental professionals.
PMID:23444121
Long non-coding RNA in cancer.
PMID:23443164
Regulatory genomics: Insights from the zebrafish.
PMID:23440612
Protein analysis by shotgun/bottom-up proteomics.
PMID:23438204
Evaluating rare variants in complex disorders using next-generation sequencing.
PMID:23435969
Mutation screen and RNA analysis disclose the changed splicing of the E-cadherin transcription in gastric cancer.
PMID:23435907
Using population admixture to help complete maps of the human genome.
PMID:23435088
Probing a coral genome for components of the photoprotective scytonemin biosynthetic pathway and the 2-aminoethylphosphonate pathway.
PMID:23434798
Intrinsic immunity against retrotransposons by APOBEC cytidine deaminases.
PMID:23431045
On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE.
PMID:23431001
Emergence of novel domains in proteins.
PMID:23425224
SPPS resins impact the PNA-syntheses' improvement.
PMID:23423830
Assessment of clinical analytical sensitivity and specificity of next-generation sequencing for detection of simple and complex mutations.
PMID:23418865
PBOV1 is a human de novo gene with tumor-specific expression that is associated with a positive clinical outcome of cancer.
PMID:23418531
Genome-Level Analysis of Selective Constraint without Apparent Sequence Conservation.
PMID:23418180
A library of TAL effector nucleases spanning the human genome.
PMID:23417094
Transposable elements as genetic regulatory substrates in early development.
PMID:23411159
New clinical and molecular insights on Barth syndrome.
PMID:23409742
Transposon variants and their effects on gene expression in Arabidopsis.
PMID:23408902
The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome.
PMID:23408798
Noncoding RNAs and Cancer.
PMID:23407615
The Role of MicroRNAs in Human Diseases.
PMID:23407304
Comparison of sequencing platforms for single nucleotide variant calls in a human sample.
PMID:23405114
Microsatellite instability in sarcoma: fact or fiction?
PMID:23401795
A proteomics view of the molecular mechanisms and biomarkers of glaucomatous neurodegeneration.
PMID:23396249
The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes.
PMID:23393154
Comparative analysis of de novo transcriptome assembly.
PMID:23393031
Multiple tandem splicing silencer elements suppress aberrant splicing within the long exon 26 of the human Apolipoprotein B gene.
PMID:23391187
Genetics and epigenetics of rheumatoid arthritis.
PMID:23381558
p53 promotes repair of heterochromatin DNA by regulating JMJD2b and SUV39H1 expression.
PMID:23376847
Discovery of novel non-synonymous SNP variants in 988 candidate genes from 6 centenarians by target capture and next-generation sequencing.
PMID:23376243
Striking structural dynamism and nucleotide sequence variation of the transposon Galileo in the genome of Drosophila mojavensis.
PMID:23374229
What role (if any) does the highly conserved CSB-PGBD3 fusion protein play in Cockayne syndrome?
PMID:23369858
Host genomic influences on HIV/AIDS.
PMID:23369251
A novel subgradient-based optimization algorithm for blockmodel functional module identification.
PMID:23368964
The genome-defence gene Tex19.1 suppresses LINE-1 retrotransposons in the placenta and prevents intra-uterine growth retardation in mice.
PMID:23364048
NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression.
PMID:23362321
Estimation of data-specific constitutive exons with RNA-Seq data.
PMID:23360225
Development of a cytokine-modified allogeneic whole cell pancreatic cancer vaccine.
PMID:23359154
A lower degree of PBMC L1 methylation is associated with excess body weight and higher HOMA-IR in the presence of lower concentrations of plasma folate.
PMID:23358786
Transposable elements re-wire and fine-tune the transcriptome.
PMID:23358118
The human THAP9 gene encodes an active P-element DNA transposase.
PMID:23349291
Quantitation of HIV DNA integration: effects of differential integration site distributions on Alu-PCR assays.
PMID:23348058
Mechanisms and dynamics of orphan gene emergence in insect genomes.
PMID:23348040
Transposable Elements: No More 'Junk DNA'.
PMID:23346034
A short history of the genome-wide association study: where we were and where we are going.
PMID:23346033
A 21(st) Century View of Evolution.
PMID:23345811
Turning gold into 'junk': transposable elements utilize central proteins of cellular networks.
PMID:23341038
Evolutionary rate of human tissue-specific genes are related with transposable element insertions.
PMID:23337972
The sum of many small changes: microRNAs are specifically and potentially globally altered by vitamin D3 metabolites.
PMID:23333596
Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters.
PMID:23329697
ENCODE and its first impractical application.
PMID:23327603
Physiology of SLC12 transporters: lessons from inherited human genetic mutations and genetically engineered mouse knockouts.
PMID:23325410
Paraspeckle formation during the biogenesis of long non-coding RNAs.
PMID:23324609
Hsa-mir-124-3 CpG island methylation is associated with advanced tumours and disease recurrence of patients with clear cell renal cell carcinoma.
PMID:23321515
How do mammalian transposons induce genetic variation? A conceptual framework: the age, structure, allele frequency, and genome context of transposable elements may define their wide-ranging biological impacts.
PMID:23319453
Personalized medicine: Has it started yet? A reconstruction of the early history.
PMID:23316213
Evaluating risks of insertional mutagenesis by DNA transposons in gene therapy.
PMID:23313630
Mobile element biology: new possibilities with high-throughput sequencing.
PMID:23312846
Homopolymer tail-mediated ligation PCR: a streamlined and highly efficient method for DNA cloning and library construction.
PMID:23311318
Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing.
PMID:23308154
Locus-specific DNA methylation reprogramming during early porcine embryogenesis.
PMID:23303676
Inference of the protokaryotypes of amniotes and tetrapods and the evolutionary processes of microchromosomes from comparative gene mapping.
PMID:23300852
Single-stranded annealing induced by re-initiation of replication origins provides a novel and efficient mechanism for generating copy number expansion via non-allelic homologous recombination.
PMID:23300490
Chapter 12: Human microbiome analysis.
PMID:23300406
Role of DNA secondary structures in fragile site breakage along human chromosome 10.
PMID:23297364
High-throughput sequencing and rare genetic diseases.
PMID:23293577
Revisiting the evolution of mouse LINE-1 in the genomic era.
PMID:23286374
A novel family of terminal-repeat retrotransposon in miniature (TRIM) in the genome of the red harvester ant, Pogonomyrmex barbatus.
PMID:23285291
Establishment of a TGFβ-induced post-transcriptional EMT gene signature.
PMID:23285117
HTS-PEG: a method for high throughput sequencing of the paired-ends of genomic libraries.
PMID:23284958
Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons.
PMID:23284938
A genome-wide perspective of human diversity and its implications in infectious disease.
PMID:23284079
Human endogenous retroviruses and cancer prevention: evidence and prospects.
PMID:23282240
Reconstructing the evolutionary history of transposable elements.
PMID:23275488
Population-scale analysis of human microsatellites reveals novel sources of exonic variation.
PMID:23274653
The ADAR protein family.
PMID:23273215
Proteomics meets the scientific method.
PMID:23269373
Omics Screening for Pharmaceutical Efficacy and Safety in Clinical Practice.
PMID:23264882
Host restriction factors in retroviral infection: promises in virus-host interaction.
PMID:23254112
Selection-driven extinction dynamics for group II introns in Enterobacteriales.
PMID:23251705
Genome-wide analysis of DNA methylation differences in muscle and fat from monozygotic twins discordant for type 2 diabetes.
PMID:23251491
Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges.
PMID:23251139
Detecting rare variants for psychiatric disorders using next generation sequencing: a methods primer.
PMID:23250814
miRNA-mediated risk for schizophrenia in 22q11.2 deletion syndrome.
PMID:23248646
Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon.
PMID:23248290
Latent regulatory potential of human-specific repetitive elements.
PMID:23246434
Conservation of the three-dimensional structure in non-homologous or unrelated proteins.
PMID:23244440
Distinct mutational behaviors differentiate short tandem repeats from microsatellites in the human genome.
PMID:23241442
Histone demethylase Jumonji D3 (JMJD3) as a tumor suppressor by regulating p53 protein nuclear stabilization.
PMID:23236496
Sequences associated with centromere competency in the human genome.
PMID:23230266
Horizontal transfer and the evolution of host-pathogen interactions.
PMID:23227424
The yin and yang of repair mechanisms in DNA structure-induced genetic instability.
PMID:23219604
The evolution of ultraconserved elements with different phylogenetic origins.
PMID:23217155
LINE-1 methylation shows little intra-patient heterogeneity in primary and synchronous metastatic colorectal cancer.
PMID:23216958
Nonallelic homologous recombination between retrotransposable elements is a driver of de novo unbalanced translocations.
PMID:23212949
A fast and accurate SNP detection algorithm for next-generation sequencing data.
PMID:23212387
Evolution of hemoglobin and its genes.
PMID:23209182
Large-scale isolation of microsatellites from Chinese Mitten Crab Eriocheir sinensis via a Solexa Genomic Survey.
PMID:23208373
Next generation sequencing of CLU, PICALM and CR1: pitfalls and potential solutions.
PMID:23205178
Genomics in cardiovascular diseases: analysis of the importance of the toll-like receptor signaling pathway.
PMID:23204853
Overview of micro- and nano-technology tools for stem cell applications: micropatterned and microelectronic devices.
PMID:23202240
In vitro selection of proteins with desired characteristics using mRNA-display.
PMID:23201412
Next generation sequencing for neurological diseases: new hope or new hype?
PMID:23200550
Molecular genetics of AML.
PMID:23200536
Developing biobanks in developing countries.
PMID:23198094
H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.
PMID:23197657
Identification of a group of Mus dunni endogenous virus-like endogenous retroviruses from the C57BL/6J mouse genome: proviral genomes, strain distribution, expression characteristics, and genomic integration profile.
PMID:23197326
Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.
PMID:23193282
Bioinformatics. Introduction.
PMID:23189382
Coinciding revolutions: how discovery of non-coding DNA and RNA can change our understanding of addiction.
PMID:23189086
Endogenous hepatitis C virus homolog fragments in European rabbit and hare genomes replicate in cell culture.
PMID:23185448
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
PMID:23185243
Transposable elements reveal a stem cell-specific class of long noncoding RNAs.
PMID:23181609
Genomic sequencing in cancer.
PMID:23178448
Somatic transposition in the brain has the potential to influence the biosynthesis of metabolites involved in Parkinson's disease and schizophrenia.
PMID:23176288
NANOGP8: evolution of a human-specific retro-oncogene.
PMID:23173096
Epigenome remodelling in breast cancer: insights from an early in vitro model of carcinogenesis.
PMID:23168266
Comparative analysis of the recently discovered hAT transposon TcBuster in human cells.
PMID:23166581
Is there a role for endogenous retroviruses to mediate long-term adaptive phenotypic response upon environmental inputs?
PMID:23166400
piRNA and spermatogenesis in mice.
PMID:23166399
HERVs expression in Autism Spectrum Disorders.
PMID:23155411
Human endogenous retroviruses and cancer: causality and therapeutic possibilities.
PMID:23155332
First all-in-one diagnostic tool for DNA intelligence: genome-wide inference of biogeographic ancestry, appearance, relatedness, and sex with the Identitas v1 Forensic Chip.
PMID:23149900
Genome sequences of wild and domestic bactrian camels.
PMID:23149746
Adaptive efficient compression of genomes.
PMID:23146997
Active transposition in genomes.
PMID:23145912
A non-synonymous single nucleotide polymorphism in an OPRM1 splice variant is associated with fentanyl-induced emesis in women undergoing minor gynaecological surgery.
PMID:23144877
Ribonuclease 4 protects neuron degeneration by promoting angiogenesis, neurogenesis, and neuronal survival under stress.
PMID:23143660
HERV-K-specific T cells eliminate diverse HIV-1/2 and SIV primary isolates.
PMID:23143309
Amino termini of many yeast proteins map to downstream start codons.
PMID:23140384
FungiQuant: a broad-coverage fungal quantitative real-time PCR assay.
PMID:23136846
Impact of retrotransposons in pluripotent stem cells.
PMID:23135636
Epigenetic regulation of human embryonic stem cells.
PMID:23133442
The correlation of genome size and DNA methylation rate in metazoans.
PMID:23132463
LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons.
PMID:23131050
Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii.
PMID:23127207
LINE-1-derived poly(A) microsatellites undergo rapid shortening and create somatic and germline mosaicism in mice.
PMID:23125228
General survey of hAT transposon superfamily with highlight on hobo element in Drosophila.
PMID:23111927
Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana.
PMID:23111501
Exclusion of exon 2 is a common mRNA splice variant of primate telomerase reverse transcriptases.
PMID:23110161
When a domain is not a domain, and why it is important to properly filter proteins in databases: conflicting definitions and fold classification systems for structural domains make filtering of such databases imperative.
PMID:23108912
Multifaceted roles of Arabidopsis PP6 phosphatase in regulating cellular signaling and plant development.
PMID:23104112
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
PMID:23098210
The roles of gene duplication, gene conversion and positive selection in rodent Esp and Mup pheromone gene families with comparison to the Abp family.
PMID:23094077
MOV10 RNA helicase is a potent inhibitor of retrotransposition in cells.
PMID:23093941
Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation.
PMID:23093672
A resurrected mammalian hAT transposable element and a closely related insect element are highly active in human cell culture.
PMID:23091042
Functional eukaryotic nuclear localization signals are widespread in terminal proteins of bacteriophages.
PMID:23091024
Targeting the transposase domain of the DNA repair component Metnase to enhance chemotherapy.
PMID:23090115
A functional selection model explains evolutionary robustness despite plasticity in regulatory networks.
PMID:23089682
Alu elements and human common diseases like obesity.
PMID:23087845
Protein phosphatase 1γ isoforms linked interactions in the brain.
PMID:23080069
The dual roles of homeobox genes in vascularization and wound healing.
PMID:23076135
Alu and LINE-1 methylation and lung function in the normative ageing study.
PMID:23075571
Genome-wide association studies in myocardial infarction and coronary artery disease.
PMID:23074578
Gypsy, RTE and Mariner transposable elements populate Eyprepocnemis plorans genome.
PMID:23073915
The SLEEPER genes: a transposase-derived angiosperm-specific gene family.
PMID:23067104
DICER- and AGO3-dependent generation of retinoic acid-induced DR2 Alu RNAs regulates human stem cell proliferation.
PMID:23064648
Long interspersed nuclear elements (LINEs) show tissue-specific, mosaic genome and methylation-unrestricted, widespread expression of noncoding RNAs in somatic tissues of the rat.
PMID:23064113
Intronic retroelements: Not just "speed bumps" for RNA polymerase II.
PMID:23061024
Distribution of MGEs and their insertion sites in the Macaca mulatta genome.
PMID:23061019
A repetitive elements perspective in Polycomb epigenetics.
PMID:23060903
Association of BLCA-4 hypomethylation in blood leukocyte DNA and the risk of bladder cancer in a Chinese population.
PMID:23055020
N-terminal horseshoe conformation of DCC is functionally required for axon guidance and might be shared by other neural receptors.
PMID:23038776
The landscape of DNA repeat elements in human heart failure.
PMID:23034148
Epigenetic interplay between mouse endogenous retroviruses and host genes.
PMID:23034137
Paired-end sequencing of long-range DNA fragments for de novo assembly of large, complex Mammalian genomes by direct intra-molecule ligation.
PMID:23029438
Patterns and possible roles of LINE-1 methylation changes in smoke-exposed epithelia.
PMID:23028911
Zinc finger binding motifs do not explain recombination rate variation within or between species of Drosophila.
PMID:23028758
The RNA polymerase II CTD coordinates transcription and RNA processing.
PMID:23028141
The search for genetic modifiers of disease severity in the β-hemoglobinopathies.
PMID:23028136
Somatic Populations of PGT135-137 HIV-1-Neutralizing Antibodies Identified by 454 Pyrosequencing and Bioinformatics.
PMID:23024643
Activity based protein profiling to detect serine hydrolase alterations in virus infected cells.
PMID:23024641
Integrative genomics in cardiovascular medicine.
PMID:23024270
Cell type-specific termination of transcription by transposable element sequences.
PMID:23020800
Translating genomic information into clinical medicine: lung cancer as a paradigm.
PMID:23019146
ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins.
PMID:23009561
The minimal active human SVA retrotransposon requires only the 5'-hexamer and Alu-like domains.
PMID:23007156
LINE1 family member is negative regulator of HLA-G expression.
PMID:23002136
Identification and functional characterization of a novel UDP-glucuronosyltransferase 2A1 splice variant: potential importance in tobacco-related cancer susceptibility.
PMID:22984225
Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm.
PMID:22977183
Circular retrotransposition products generated by a LINE retrotransposon.
PMID:22977178
Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes.
PMID:22975719
RCDA: a highly sensitive and specific alternatively spliced transcript assembly tool featuring upstream consecutive exon structures.
PMID:22971325
Whole genome sequencing of field isolates provides robust characterization of genetic diversity in Plasmodium vivax.
PMID:22970335
A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana.
PMID:22969437
c-fos and its Consequences in Pain.
PMID:22969311
What are we learning from the cancer genome?
PMID:22965149
Zinc and the modulation of redox homeostasis.
PMID:22960578
No additional copies of HERV-Fc1 in the germ line of multiple sclerosis patients.
PMID:22958517
Transposable elements in TDP-43-mediated neurodegenerative disorders.
PMID:22957047
Coverage of genomic medicine: information gap between lay public and scientists.
PMID:22956889
Evidence of abundant purifying selection in humans for recently acquired regulatory functions.
PMID:22956687
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.
PMID:22955982
Decoding the human genome.
PMID:22955971
Cardiomyogenesis in the aging and failing human heart.
PMID:22955965
Genomics: ENCODE explained.
PMID:22955614
Effective gene trapping mediated by Sleeping Beauty transposon.
PMID:22952894
Uncovering transcription factor modules using one- and three-dimensional analyses.
PMID:22952238
Application of next generation sequencing in mammalian embryogenomics: lessons learned from endogenous betaretroviruses of sheep.
PMID:22951118
Self-assembly of thin plates from micrococcal nuclease-digested chromatin of metaphase chromosomes.
PMID:22947873
siSPOTR: a tool for designing highly specific and potent siRNAs for human and mouse.
PMID:22941647
The roles played by highly truncated splice variants of G protein-coupled receptors.
PMID:22938630
Chromatin and epigenetic regulation of pre-mRNA processing.
PMID:22936691
Transcriptome sequencing in Sezary syndrome identifies Sezary cell and mycosis fungoides-associated lncRNAs and novel transcripts.
PMID:22936659
The next generation of complex lung genetic studies.
PMID:22936355
Coevolution between simple sequence repeats (SSRs) and virus genome size.
PMID:22931422
Phylogenetic analysis of genome rearrangements among five mammalian orders.
PMID:22929217
Genetics of asthma susceptibility and severity.
PMID:22929093
The diversity of class II transposable elements in mammalian genomes has arisen from ancestral phylogenetic splits during ancient waves of proliferation through the genome.
PMID:22923465
Challenges in medical applications of whole exome/genome sequencing discoveries.
PMID:22921985
The rhizome of life: what about metazoa?
PMID:22919641
SRSF2 mutations in 275 cases with chronic myelomonocytic leukemia (CMML).
PMID:22919025
Molecular reconstruction of extinct LINE-1 elements and their interaction with nonautonomous elements.
PMID:22918960
Opportunities and challenges associated with clinical diagnostic genome sequencing: a report of the Association for Molecular Pathology.
PMID:22918138
The human transcriptome: an unfinished story.
PMID:22916334
Eco-geographical diversification of bitter taste receptor genes (TAS2Rs) among subspecies of chimpanzees (Pan troglodytes).
PMID:22916235
Genetics and regulatory impact of alternative polyadenylation in human B-lymphoblastoid cells.
PMID:22916029
Single nucleotide polymorphisms can create alternative polyadenylation signals and affect gene expression through loss of microRNA-regulation.
PMID:22915998
Retrotransposon long interspersed nucleotide element-1 (LINE-1) is activated during salamander limb regeneration.
PMID:22913491
Rescuing Alu: recovery of new inserts shows LINE-1 preserves Alu activity through A-tail expansion.
PMID:22912586
Rapid development of a potent photo-triggered inhibitor of the serine hydrolase RBBP9.
PMID:22907802
Poly(A) binding protein C1 is essential for efficient L1 retrotransposition and affects L1 RNP formation.
PMID:22907758
The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite.
PMID:22906166
ROS-activated anticancer prodrugs: a new strategy for tumor-specific damage.
PMID:22900465
Polyploidy and the evolution of complex traits.
PMID:22900230
Male-specific repeats in wild Bovidae.
PMID:22895838
Franklin H. Epstein Lecture. Both ends of the leash--the human links to good dogs with bad genes.
PMID:22894576
Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs.
PMID:22892240
Bacterial tyrosine kinases: evolution, biological function and structural insights.
PMID:22889913
Transposon Invasion of the Paramecium Germline Genome Countered by a Domesticated PiggyBac Transposase and the NHEJ Pathway.
PMID:22888464
Stepping stones in DNA sequencing.
PMID:22887891
A beginners guide to SNP calling from high-throughput DNA-sequencing data.
PMID:22886560
Human endogenous retrovirus expression is inversely associated with chronic immune activation in HIV-1 infection.
PMID:22879884
The mammalian PYHIN gene family: phylogeny, evolution and expression.
PMID:22871040
Characterization of transposable elements in the ectomycorrhizal fungus Laccaria bicolor.
PMID:22870194
ERK1/2 activation is a therapeutic target in age-related macular degeneration.
PMID:22869729
Analysis of jaagsiekte sheep retrovirus (JSRV) envelope protein domains in transformation.
PMID:22864547
Cell-type specificity of ChIP-predicted transcription factor binding sites.
PMID:22863112
Exploring metazoan evolution through dynamic and holistic changes in protein families and domains.
PMID:22862991
Human endogenous retrovirus K Gag coassembles with HIV-1 Gag and reduces the release efficiency and infectivity of HIV-1.
PMID:22855497
Optofluidic detection for cellular phenotyping.
PMID:22854915
Whole-genome and whole-exome sequencing in neurological diseases.
PMID:22847385
Expression of endogenous retroviruses is negatively regulated by the pluripotency marker Rex1/Zfp42.
PMID:22844087
Whole genome sequencing for lung cancer.
PMID:22833821
Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes.
PMID:22833223
High-resolution gene expression atlases for adult and developing mouse brain and spinal cord.
PMID:22832508
Identifying disease mutations in genomic medicine settings: current challenges and how to accelerate progress.
PMID:22830651
DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum.
PMID:22827734
Exploring predisposition and treatment response--the promise of genomics.
PMID:22824110
FAST-SeqS: a simple and efficient method for the detection of aneuploidy by massively parallel sequencing.
PMID:22815955
Alternative splicing: a potential source of functional innovation in the eukaryotic genome.
PMID:22811948
Points of view: Representing the genome.
PMID:22803197
The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome.
PMID:22791747
Splicing of internal large exons is defined by novel cis-acting sequence elements.
PMID:22790982
Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.
PMID:22785314
Compressive genomics.
PMID:22781691
Intron Retention and TE Exonization Events in ZRANB2.
PMID:22778693
A high-resolution 15,000(Rad) radiation hybrid panel for the domestic cat.
PMID:22777158
Retargeting sleeping beauty transposon insertions by engineered zinc finger DNA-binding domains.
PMID:22776959
Genomics and bioinformatics of Parkinson's disease.
PMID:22762024
HIV DNA integration.
PMID:22762018
Microarray-based sketches of the HERV transcriptome landscape.
PMID:22761958
Role of MHC-linked susceptibility genes in the pathogenesis of human and murine lupus.
PMID:22761632
Mammalian NUMT insertion is non-random.
PMID:22761406
Do human transposable element small RNAs serve primarily as genome defenders or genome regulators?
PMID:22754749
REMiner-II: a tool for rapid identification and configuration of repetitive element arrays from large mammalian chromosomes as a single query.
PMID:22750555
EWS/FLI-responsive GGAA microsatellites exhibit polymorphic differences between European and African populations.
PMID:22749036
LINE-1 methylation in visceral adipose tissue of severely obese individuals is associated with metabolic syndrome status and related phenotypes.
PMID:22748066
ALCAM regulates motility, invasiveness, and adherens junction formation in uveal melanoma cells.
PMID:22745734
Genomic amplification of an endogenous retrovirus in zebrafish T-cell malignancies.
PMID:22745640
Vaccination with cancer- and HIV infection-associated endogenous retrotransposable elements is safe and immunogenic.
PMID:22745376
Why bioimage informatics matters.
PMID:22743769
RNA-Seq and human complex diseases: recent accomplishments and future perspectives.
PMID:22739340
Inverted Alu dsRNA structures do not affect localization but can alter translation efficiency of human mRNAs independent of RNA editing.
PMID:22735697
RNAi in the regulation of mammalian viral infections.
PMID:22734679
TOLKIN--Tree of Life Knowledge and Information Network: filling a gap for collaborative research in biological systematics.
PMID:22724002
The unstable CCTG repeat responsible for myotonic dystrophy type 2 originates from an AluSx element insertion into an early primate genome.
PMID:22723857
The bonobo genome compared with the chimpanzee and human genomes.
PMID:22722832
Modeling neurodevelopmental disorders using human neurons.
PMID:22717528
Alu expression in human cell lines and their retrotranspositional potential.
PMID:22716230
Evolution of coding and non-coding genes in HOX clusters of a marsupial.
PMID:22708672
Terminal 4q deletion syndrome.
PMID:22707778
Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications.
PMID:22704344
The genomic landscape shaped by selection on transposable elements across 18 mouse strains.
PMID:22703977
The evolution of human genetic studies of cleft lip and cleft palate.
PMID:22703175
Sequence-specific binding of recombinant Zbed4 to DNA: insights into Zbed4 participation in gene transcription and its association with other proteins.
PMID:22693546
UniPrimer: A Web-Based Primer Design Tool for Comparative Analyses of Primate Genomes.
PMID:22693428
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns.
PMID:22689467
3'-UTR-located inverted Alu repeats facilitate mRNA translational repression and stress granule accumulation.
PMID:22688648
An Alu-based phylogeny of gibbons (hylobatidae).
PMID:22683814
Emerging view of the human virome.
PMID:22683423
Reduced GNG2 expression levels in mouse malignant melanomas and human melanoma cell lines.
PMID:22679562
Repetitive element DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry.
PMID:22678115
Integration of maternal genome into the neonate genome through breast milk mRNA transcripts and reverse transcriptase.
PMID:22676860
Next-generation sequencing and large genome assemblies.
PMID:22676195
Infectious endogenous retroviruses in cats and emergence of recombinant viruses.
PMID:22674983
Transcriptional networks driving enhancer function in the CFTR gene.
PMID:22671145
Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.
PMID:22668792
Global hypomethylation in hepatocellular carcinoma and its relationship to aflatoxin B(1) exposure.
PMID:22666524
Modes of retrotransposition of long interspersed element-1 by environmental factors.
PMID:22666219
Human Genomic Deletions Generated by SVA-Associated Events.
PMID:22666087
The hallmarks of cancer: a long non-coding RNA point of view.
PMID:22664915
Patterns of cellular and HPV 16 methylation as biomarkers for cervical neoplasia.
PMID:22664184
Genome regulation by long noncoding RNAs.
PMID:22663078
IMGT-ONTOLOGY 2012.
PMID:22654892
Biological roles and therapeutic potential of hydroxy-carboxylic Acid receptors.
PMID:22654812
Genomes, populations and diseases: ethnic genomics and personalized medicine.
PMID:22649660
Combining two technologies for full genome sequencing of human.
PMID:22649622
Opportunities and challenges for nutritional proteomics in cancer prevention.
PMID:22649262
Divergent dispersion behavior of ssDNA fragments during microchip electrophoresis in pDMA and LPA entangled polymer networks.
PMID:22648809
High-throughput sequencing to decipher the genetic heterogeneity of deafness.
PMID:22647651
Application of next-generation sequencing technologies in virology.
PMID:22647373
Translational research in infectious disease: current paradigms and challenges ahead.
PMID:22633095
C-GATE - catalogue of genes affected by transposable elements.
PMID:22621612
Recombinant SINEs are formed at high frequency during induced retrotransposition in vivo.
PMID:22617294
Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer.
PMID:22611467
Gene transfer to chicks using lentiviral vectors administered via the embryonic chorioallantoic membrane.
PMID:22606269
The RGD finger of Del-1 is a unique structural feature critical for integrin binding.
PMID:22601780
One community's effort to control genetic disease.
PMID:22594747
Spectraplakins: master orchestrators of cytoskeletal dynamics.
PMID:22584905
Comparative studies of glycosylphosphatidylinositol-anchored high-density lipoprotein-binding protein 1: evidence for a eutherian mammalian origin for the GPIHBP1 gene from an LY6-like gene.
PMID:22582156
Human transposon tectonics.
PMID:22579280
Silencing of endogenous envelope genes in human choriocarcinoma cells shows that envPb1 is involved in heterotypic cell fusions.
PMID:22573740
Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells.
PMID:22570599
Genetics: polymorphisms, epigenetics, and something in between.
PMID:22567405
The impact of genomics on pediatric research and medicine.
PMID:22566424
Studies of endogenous retroviruses reveal a continuing evolutionary saga.
PMID:22565131
Genomic impact, chromosomal distribution and transcriptional regulation of HERV elements.
PMID:22562360
Shape-based alignment of genomic landscapes in multi-scale resolution.
PMID:22561376
Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.
PMID:22559943
Expansion of CORE-SINEs in the genome of the Tasmanian devil.
PMID:22559330
Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands.
PMID:22558141
piRNA-mediated transgenerational inheritance of an acquired trait.
PMID:22555593
Large-scale transcriptome sequencing and gene analyses in the crab-eating macaque (Macaca fascicularis) for biomedical research.
PMID:22554259
Endogenous hepadnaviruses in the genome of the budgerigar (Melopsittacus undulatus) and the evolution of avian hepadnaviruses.
PMID:22553337
The unconventional structure of centromeric nucleosomes.
PMID:22552438
Current challenges in de novo plant genome sequencing and assembly.
PMID:22546054
Is somatic retrotransposition a parasitic or symbiotic phenomenon?
PMID:22545239
What Nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals.
PMID:22545237
Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers.
PMID:22541534
DICER1 loss and Alu RNA induce age-related macular degeneration via the NLRP3 inflammasome and MyD88.
PMID:22541070
Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegans.
PMID:22540038
Accumulation and rapid decay of non-LTR retrotransposons in the genome of the three-spine stickleback.
PMID:22534163
Different measures of "genome-wide" DNA methylation exhibit unique properties in placental and somatic tissues.
PMID:22531475
The distribution of a germline methylation marker suggests a regional mechanism of LINE-1 silencing by the piRNA-PIWI system.
PMID:22530917
Unique profile of ordered arrangements of repetitive elements in the C57BL/6J mouse genome implicating their functional roles.
PMID:22529984
A selection index for gene expression evolution and its application to the divergence between humans and chimpanzees.
PMID:22529958
Env-less endogenous retroviruses are genomic superspreaders.
PMID:22529376
Identification of BC005512 as a DNA damage responsive murine endogenous retrovirus of GLN family involved in cell growth regulation.
PMID:22514700
A beginner's guide to eukaryotic genome annotation.
PMID:22510764
Sequence and expression analysis of gaps in human chromosome 20.
PMID:22510267
Global DNA hypomethylation in peripheral blood leukocytes as a biomarker for cancer risk: a meta-analysis.
PMID:22509334
Advances in BAC-based physical mapping and map integration strategies in plants.
PMID:22500080
From genes to environment: using integrative genomics to build a "systems-level" understanding of autism spectrum disorders.
PMID:22497667
Differential epigenetic regulation of TOX subfamily high mobility group box genes in lung and breast cancers.
PMID:22496870
Harnessing genomics and genome biology to understand malaria biology.
PMID:22495435
Multiple cellular mechanisms prevent chromosomal rearrangements involving repetitive DNA.
PMID:22494239
Patterns and evolution of nucleotide landscapes in seed plants.
PMID:22492812
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs.
PMID:22492706
Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.
PMID:22491057
Clinical software development for the Web: lessons learned from the BOADICEA project.
PMID:22490389
Finding a place for genomics in health disparities research.
PMID:22488458
The conserved Cockayne syndrome B-piggyBac fusion protein (CSB-PGBD3) affects DNA repair and induces both interferon-like and innate antiviral responses in CSB-null cells.
PMID:22483866
Resolving the breakpoints of the 17q21.31 microdeletion syndrome with next-generation sequencing.
PMID:22482802
Dynamics of gene duplication and transposons in microbial genomes following a sudden environmental change.
PMID:22479691
Targeting novel sites: The N-terminal DNA binding domain of non-LTR retrotransposons is an adaptable module that is implicated in changing site specificities.
PMID:22479684
Comparative omics-driven genome annotation refinement: application across Yersiniae.
PMID:22479471
C. elegans germ cells show temperature and age-dependent expression of Cer1, a Gypsy/Ty3-related retrotransposon.
PMID:22479180
Features of methylation and gene expression in the promoter-associated CpG islands using human methylome data.
PMID:22474411
Primate genome gain and loss: a bone dysplasia, muscular dystrophy, and bone cancer syndrome resulting from mutated retroviral-derived MTAP transcripts.
PMID:22464254
The concept of RNA-assisted protein folding: the role of tRNA.
PMID:22462735
Pharmacogenetics: implementing personalized medicine.
PMID:22461093
Exploring the cancer genome in the era of next-generation sequencing.
PMID:22460448
Neuroinflammation in the aging down syndrome brain; lessons from Alzheimer's disease.
PMID:22454637
The genetics of age-related health outcomes.
PMID:22454370
A regulatory role for repeated decoy transcription factor binding sites in target gene expression.
PMID:22453733
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries.
PMID:22453055
Analysis of chromatin dynamics during glucocorticoid receptor activation.
PMID:22451486
The hypothalamic-neurohypophyseal system: from genome to physiology.
PMID:22448850
Discovery of defense- and neuropeptides in social ants by genome-mining.
PMID:22448224
Protective effect of human endogenous retrovirus K dUTPase variants on psoriasis susceptibility.
PMID:22437317
Regular patterns for proteome-wide distribution of protein abundance across species.
PMID:22427835
Molecular Genetics and Economics.
PMID:22427719
Pharmacogenomics in early-phase oncology clinical trials: is there a sweet spot in phase II?
PMID:22427349
Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio).
PMID:22424280
The structural biology of HIV-1: mechanistic and therapeutic insights.
PMID:22421880
Aviram-Ratner rectifying mechanism for DNA base-pair sequencing through graphene nanogaps.
PMID:22418779
Widespread recurrent evolution of genomic features.
PMID:22417916
Vertebrate hepatic lipase genes and proteins: a review supported by bioinformatic studies.
PMID:22408368
Active human retrotransposons: variation and disease.
PMID:22406018
Hairless mutation: a driving force of humanization from a human-ape common ancestor by enforcing upright walking while holding a baby with both hands.
PMID:22404045
AIM1 and LINE-1 epigenetic aberrations in tumor and serum relate to melanoma progression and disease outcome.
PMID:22402438
High Levels of Sequence Diversity in the 5' UTRs of Human-Specific L1 Elements.
PMID:22400009
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.
PMID:22398612
Modelling human regulatory variation in mouse: finding the function in genome-wide association studies and whole-genome sequencing.
PMID:22396661
Functions of PIWI proteins in spermatogenesis.
PMID:22384420
Assessment of metagenomic assembly using simulated next generation sequencing data.
PMID:22384016
Genetic and epigenetic studies offer new therapeutic options for the treatment of T-cell acute lymphoblastic leukemia.
PMID:22383740
Decoding the cardiac message: the 2011 Thomas W. Smith Memorial Lecture.
PMID:22383710
Low-level environmental cadmium exposure is associated with DNA hypomethylation in Argentinean women.
PMID:22382075
Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels.
PMID:22373820
Detection of interacting transcription factors in human tissues using predicted DNA binding affinity.
PMID:22369666
Translating the brain transcriptome in neuroAIDS: from non-human primates to humans.
PMID:22367717
Orphan G protein-coupled receptors (GPCRs): biological functions and potential drug targets.
PMID:22367282
A novel framework for the comparative analysis of biological networks.
PMID:22363585
Male germline control of transposable elements.
PMID:22357546
EZR1: a novel family of highly expressed retroelements induced by TCDD and regulated by a NF-κB-like factor in embryos of zebrafish (Danio rerio).
PMID:22356696
DNA sequencing: clinical applications of new DNA sequencing technologies.
PMID:22354974
Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome.
PMID:22354707
Exploring the implications of INDELs in neuropsychiatric genetics: challenges and perspectives.
PMID:22350990
Non-coding RNAs as regulators of mammary development and breast cancer.
PMID:22350981
Phosphoproteomic differences in major depressive disorder postmortem brains indicate effects on synaptic function.
PMID:22350622
Immune cell activation by trophoblast-derived microvesicles is mediated by syncytin 1.
PMID:22348442
Chemical approaches for structure and function of RNA in postgenomic era.
PMID:22347623
A genomewide screen for suppressors of Alu-mediated rearrangements reveals a role for PIF1.
PMID:22347400
Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA.
PMID:22346759
Rates and fitness consequences of new mutations in humans.
PMID:22345605
Construction of BIBAC and BAC libraries from a variety of organisms for advanced genomics research.
PMID:22343430
Preparation of megabase-sized DNA from a variety of organisms using the nuclei method for advanced genomics research.
PMID:22343429
Retrotransposons at Drosophila telomeres: host domestication of a selfish element for the maintenance of genome integrity.
PMID:22342531
Molecular methods for pathogen and microbial community detection and characterization: current and potential application in diagnostic microbiology.
PMID:22342514
Gene therapy: implications for craniofacial regeneration.
PMID:22337437
Rationally designed small molecules targeting the RNA that causes myotonic dystrophy type 1 are potently bioactive.
PMID:22332923
DNA methylation in repetitive elements and post-traumatic stress disorder: a case-control study of US military service members.
PMID:22332656
Germline pharmacogenomics in oncology: decoding the patient for targeting therapy.
PMID:22321460
Feature-by-feature--evaluating de novo sequence assembly.
PMID:22319599
Sequence-specific biosensors report drug-induced changes in epigenetic silencing in living cells.
PMID:22313050
Retroviruses push the envelope for mammalian placentation.
PMID:22308481
Detecting rare variants.
PMID:22307713
DNA methylation: a timeline of methods and applications.
PMID:22303369
Transcriptional regulation: a genomic overview.
PMID:22303220
Mono-allelic retrotransposon insertion addresses epigenetic transcriptional repression in human genome.
PMID:22300442
Detecting false-positive signals in exome sequencing.
PMID:22294350
DNA methylome analysis using short bisulfite sequencing data.
PMID:22290186
Genetics of Sjögren's syndrome in the genome-wide association era.
PMID:22289719
Selective binding of anti-DNA antibodies to native dsDNA fragments of differing sequence.
PMID:22285306
Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression.
PMID:22283730
Informatics technology mimics ecology: dense, mutualistic collaboration networks are associated with higher publication rates.
PMID:22279593
Transcriptome analysis of silver carp (Hypophthalmichthys molitrix) by paired-end RNA sequencing.
PMID:22279088
Sensitive quantitative analysis of murine LINE1 DNA methylation using high resolution melt analysis.
PMID:22274612
Gene properties and chromatin state influence the accumulation of transposable elements in genes.
PMID:22272293
Straightforward inference of ancestry and admixture proportions through ancestry-informative insertion deletion multiplexing.
PMID:22272242
Applications of targeted gene capture and next-generation sequencing technologies in studies of human deafness and other genetic disabilities.
PMID:22269275
The distribution of phosphorylated SR proteins and alternative splicing are regulated by RANBP2.
PMID:22262462
A recurrent translocation is mediated by homologous recombination between HERV-H elements.
PMID:22260357
ENU mutagenesis in mice identifies candidate genes for hypogonadism.
PMID:22258617
GRK2 and β-arrestins in cardiovascular disease: Something old, something new.
PMID:22254193
Long-range autocorrelations of CpG islands in the human genome.
PMID:22253817
Genetic interactions between chromosomes 11 and 18 contribute to airway hyperresponsiveness in mice.
PMID:22253740
Immunogenetics of spontaneous control of HIV.
PMID:22248321
Human genome sequencing in health and disease.
PMID:22248320
Immunotherapeutic potential of anti-human endogenous retrovirus-K envelope protein antibodies in targeting breast tumors.
PMID:22247020
Reverse-engineering human regulatory networks.
PMID:22246697
Molecular genetic studies of complex phenotypes.
PMID:22243791
Expression patterns of non-coding spliced transcripts from human endogenous retrovirus HERV-H elements in colon cancer.
PMID:22238681
A genome-wide association study of gestational diabetes mellitus in Korean women.
PMID:22233651
Two Strains of Crocosphaera watsonii with Highly Conserved Genomes are Distinguished by Strain-Specific Features.
PMID:22232617
Chk1 phosphorylation of Metnase enhances DNA repair but inhibits replication fork restart.
PMID:22231448
Minimal absent words in four human genome assemblies.
PMID:22220210
'Omic approaches to preventing or managing metastatic breast cancer.
PMID:22216753
Reducing system noise in copy number data using principal components of self-self hybridizations.
PMID:22207624
Alu elements: know the SINEs.
PMID:22204421
Similarities and differences between "uncapped" telomeres and DNA double-strand breaks.
PMID:22203190
L1 expression and regulation in humans and rodents.
PMID:22202032
LINEs, SINEs and other retroelements: do birds of a feather flock together?
PMID:22201808
Expressing genes do not forget their LINEs: transposable elements and gene expression.
PMID:22201807
Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing.
PMID:22201164
LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders.
PMID:22200636
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.
PMID:22192575
Polymorphic integrations of an endogenous gammaretrovirus in the mule deer genome.
PMID:22190723
A new 'Linc' between noncoding RNAs and blood development.
PMID:22190456
Modulation of auxin-binding protein 1 gene expression in maize and the teosintes by transposon insertions in its promoter.
PMID:22187004
Genetic and epigenetic variations contributed by Alu retrotransposition.
PMID:22185517
Methods, challenges, and promise of next-generation sequencing in cancer biology.
PMID:22180681
Performance comparison of whole-genome sequencing platforms.
PMID:22178993
A mammalian conserved element derived from SINE displays enhancer properties recapitulating Satb2 expression in early-born callosal projection neurons.
PMID:22174821
Mining the Gene Wiki for functional genomic knowledge.
PMID:22165947
A novel human TPIP splice-variant (TPIP-C2) mRNA, expressed in human and mouse tissues, strongly inhibits cell growth in HeLa cells.
PMID:22164291
Comparative Structures and Evolution of Vertebrate Carboxyl Ester Lipase (CEL) Genes and Proteins with a Major Role in Reverse Cholesterol Transport.
PMID:22162806
Human genetics and genomics a decade after the release of the draft sequence of the human genome.
PMID:22155605
Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes.
PMID:22151646
GAGE: A critical evaluation of genome assemblies and assembly algorithms.
PMID:22147368
Identification of a genomic reservoir for new TRIM genes in primate genomes.
PMID:22144910
Repetitive elements may comprise over two-thirds of the human genome.
PMID:22144907
Genome-wide association studies of chronic kidney disease: what have we learned?
PMID:22143329
Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population.
PMID:22135348
Dr.VIS: a database of human disease-related viral integration sites.
PMID:22135288
T2DM: Why Epigenetics?
PMID:22132323
Safe harbours for the integration of new DNA in the human genome.
PMID:22129804
Sequence shortening in the rodent ancestor.
PMID:22128134
Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution.
PMID:22128133
The NF1 gene contains hotspots for L1 endonuclease-dependent de novo insertion.
PMID:22125493
New Generations: Sequencing Machines and Their Computational Challenges.
PMID:22121326
Next-generation sequencing technologies and applications for human genetic history and forensics.
PMID:22115430
Heat shock factor binding in Alu repeats expands its involvement in stress through an antisense mechanism.
PMID:22112862
Allele Frequencies of 10 Autosomal STR Loci from Chakma and Tripura Tribal Populations in Bangladesh.
PMID:22110959
Adaptive evolution of the matrix extracellular phosphoglycoprotein in mammals.
PMID:22103247
i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets.
PMID:22102584
Next steps in cardiovascular disease genomic research--sequencing, epigenetics, and transcriptomics.
PMID:22100807
Perioperative genomics.
PMID:22099920
The emergence of lncRNAs in cancer biology.
PMID:22096659
Distribution of a marker of germline methylation differs between major families of transposon-derived repeats in the human genome.
PMID:22093876
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.
PMID:22090374
Genetics and patient outcome after cardiac surgery: unravelling translational findings.
PMID:22088869
AluScan: a method for genome-wide scanning of sequence and structure variations in the human genome.
PMID:22087792
Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations.
PMID:22087219
Characterising chromosome rearrangements: recent technical advances in molecular cytogenetics.
PMID:22086080
Nuclear receptor HNF4α binding sequences are widespread in Alu repeats.
PMID:22085832
iDASH: integrating data for analysis, anonymization, and sharing.
PMID:22081224
Neurodegeneration the RNA way.
PMID:22079416
Assessing the role of tandem repeats in shaping the genomic architecture of great apes.
PMID:22076140
Prediction of disease and phenotype associations from genome-wide association studies.
PMID:22076134
The seven-transmembrane receptor Gpr1 governs processes relevant for the antagonistic interaction of Trichoderma atroviride with its host.
PMID:22075023
Occupancy classification of position weight matrix-inferred transcription factor binding sites.
PMID:22073148
Non-retroviral fossils in vertebrate genomes.
PMID:22069518
How to apply de Bruijn graphs to genome assembly.
PMID:22068540
Primate genomes for biomedicine.
PMID:22068533
YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas.
PMID:22064860
HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.
PMID:22064851
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.
PMID:22056041
Expedited batch processing and analysis of transposon insertions.
PMID:22054356
The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery.
PMID:22053090
Translesion DNA synthesis in the context of cancer research.
PMID:22047021
A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome.
PMID:22045999
Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development.
PMID:22042642
A guided tour of large genome size in animals: what we know and where we are heading.
PMID:22042526
Mutation bias is the driving force of codon usage in the Gallus gallus genome.
PMID:22039174
Expression of glia maturation factor in neuropathological lesions of Alzheimer's disease.
PMID:22035352
The search for allelic variants that cause monogenic disorders or predispose to common, complex polygenic phenotypes.
PMID:22034389
Impact of the genome project on the identification of disease genes.
PMID:22034246
Genetic variation and pharmacogenomics: concepts, facts, and challenges.
PMID:22033504
Global mapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation.
PMID:22028663
Characterization and potential functional significance of human-chimpanzee large INDEL variation.
PMID:22024410
Genotyping performance assessment of whole genome amplified DNA with respect to multiplexing level of assay and its period of storage.
PMID:22022531
Intronic L1 retrotransposons and nested genes cause transcriptional interference by inducing intron retention, exonization and cryptic polyadenylation.
PMID:22022525
Analysis of primary structure of chromatin with next-generation sequencing.
PMID:22022339
Pack-MULEs: Recycling and reshaping genes through GC-biased acquisition.
PMID:22016862
The transposable element profile of the anolis genome: How a lizard can provide insights into the evolution of vertebrate genome size and structure.
PMID:22016857
Neisseria gonorrhoeae and humans perform an evolutionary LINE dance.
PMID:22016852
Independently derived targeting of 28S rDNA by A- and D-clade R2 retrotransposons: Plasticity of integration mechanism.
PMID:22016843
Smaller genetic risk in catabolic process explains lower energy expenditure, more athletic capability and higher prevalence of obesity in Africans.
PMID:22016803
Towards in vitro molecular diagnostics using nanostructures.
PMID:22009454
Genome analyses substantiate male mutation bias in many species.
PMID:22006834
Paleovirology - ghosts and gifts of viruses past.
PMID:22003379
Blinded study determination of high sensitivity and specificity microchip electrophoresis-SSCP/HA to detect mutations in the p53 gene.
PMID:22002021
The genomics of autoimmune disease in the era of genome-wide association studies and beyond.
PMID:22001415
Targeted protein-omic methods are bridging the gap between proteomic and hypothesis-driven protein analysis approaches.
PMID:21999828
Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction.
PMID:21999673
The human genome: a multifractal analysis.
PMID:21999602
Changes in population dynamics in mutualistic versus pathogenic viruses.
PMID:21994724
Multitasking: Making the Most out of the Retroviral Envelope.
PMID:21994694
Prenatal smoke exposure and genomic DNA methylation in a multiethnic birth cohort.
PMID:21994404
A matter of life or death: how microsatellites emerge in and vanish from the human genome.
PMID:21994250
A high-resolution map of human evolutionary constraint using 29 mammals.
PMID:21993624
Reprogramming somatic cells into iPS cells activates LINE-1 retroelement mobility.
PMID:21989055
Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression.
PMID:21985610
Birthweight, maternal weight trajectories and global DNA methylation of LINE-1 repetitive elements.
PMID:21980406
Isochores and the regulation of gene expression in the human genome.
PMID:21979159
Pathogenic exon-trapping by SVA retrotransposon and rescue in Fukuyama muscular dystrophy.
PMID:21979053
The DNA damage checkpoint allows recombination between divergent DNA sequences in budding yeast.
PMID:21978436
Advancing neuroscience through epigenetics: molecular mechanisms of learning and memory.
PMID:21978007
Methylation of L1Hs promoters is lower on the inactive X, has a tendency of being higher on autosomes in smaller genomes and shows inter-individual variability at some loci.
PMID:21972244
Functions of noncoding RNAs in neural development and neurological diseases.
PMID:21969146
Variation in the mutation rate across mammalian genomes.
PMID:21969038
Empirical evaluation reveals best fit of a logistic mutation model for human Y-chromosomal microsatellites.
PMID:21968190
MR molecular imaging of angiogenesis using targeted perfluorocarbon nanoparticles.
PMID:21966025
Breakpoint characterization of a novel large intragenic deletion of MUTYH detected in a MAP patient: case report.
PMID:21962078
Association of hypomethylation of LINE-1 repetitive element in blood leukocyte DNA with an increased risk of hepatocellular carcinoma.
PMID:21960343
Comprehensive comparison of three commercial human whole-exome capture platforms.
PMID:21955857
Developing and implementing an institute-wide data sharing policy.
PMID:21955348
What are the determinants of gene expression levels and breadths in the human genome?
PMID:21945885
Alu pair exclusions in the human genome.
PMID:21943335
Retrotransposon activation contributes to fragile X premutation rCGG-mediated neurodegeneration.
PMID:21940752
Short- and long-term evolutionary dynamics of bacterial insertion sequences: insights from Wolbachia endosymbionts.
PMID:21940637
Similarities between long interspersed element-1 (LINE-1) reverse transcriptase and telomerase.
PMID:21940498
RiDs db: Repeats in diseases database.
PMID:21938212
Polymerization and nucleic acid-binding properties of human L1 ORF1 protein.
PMID:21937507
Clinical implementation of comprehensive strategies to characterize cancer genomes: opportunities and challenges.
PMID:21935500
Genetic effects at pleiotropic loci are context-dependent with consequences for the maintenance of genetic variation in populations.
PMID:21931559
Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids.
PMID:21926997
Assemblathon 1: a competitive assessment of de novo short read assembly methods.
PMID:21926179
Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates.
PMID:21925323
Haplotype phasing: existing methods and new developments.
PMID:21921926
Skin cancer concerns and genetic risk information-seeking in primary care.
PMID:21921576
Comparative analysis of teleost genome sequences reveals an ancient intron size expansion in the zebrafish lineage.
PMID:21920901
Unlocking Mendelian disease using exome sequencing.
PMID:21920049
Genetic causation of neointimal hyperplasia in hemodialysis vascular access dysfunction.
PMID:21917012
Genomic relationship between SINE retrotransposons, Pol III-Pol II transcription, and chromatin organization: the journey from junk to jewel.
PMID:21916613
Age-dependent recombination rates in human pedigrees.
PMID:21912527
Characterizing genetic interactions in human disease association studies using statistical epistasis networks.
PMID:21910885
Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs.
PMID:21909094
4040 SNPs for genomic analysis in the rhesus macaque (Macaca mulatta).
PMID:21907785
diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data.
PMID:21906294
Remote homologue identification of Drosophila GAGA factor in mouse.
PMID:21904435
An autosomal analysis gives no genetic evidence for complex speciation of humans and chimpanzees.
PMID:21903679
Statistical Optimization of Pharmacogenomics Association Studies: Key Considerations from Study Design to Analysis.
PMID:21887206
Moving towards high density clinical signature studies with a human proteome catalogue developing multiplexing mass spectrometry assay panels.
PMID:21884626
Retrotransposon-centered analysis of piRNA targeting shows a shift from active to passive retrotransposon transcription in developing mouse testes.
PMID:21884594
Transcription factor proteomics: identification by a novel gel mobility shift-three-dimensional electrophoresis method coupled with southwestern blot and high-performance liquid chromatography-electrospray-mass spectrometry analysis.
PMID:21880322
Endogenous APOBEC3B restricts LINE-1 retrotransposition in transformed cells and human embryonic stem cells.
PMID:21878639
Novel Alu retrotransposon insertion leading to Alström syndrome.
PMID:21877133
Protein-binding microarray analysis of tumor suppressor AP2α target gene specificity.
PMID:21876733
Context-dependent individualization of nucleotides and virtual genomic hybridization allow the precise location of human SNPs.
PMID:21876154
Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons.
PMID:21876128
Gypsy and the birth of the SCAN domain.
PMID:21865395
Placenta-specific expression of the interleukin-2 (IL-2) receptor β subunit from an endogenous retroviral promoter.
PMID:21865161
Approaches for the study of cancer: towards the integration of genomics, proteomics and metabolomics.
PMID:21865133
The roles and evolutionary patterns of intronless genes in deuterostomes.
PMID:21860604
Evolutionary patterns of recently emerged animal duplogs.
PMID:21859807
Genetics, genomics, and cancer risk assessment: State of the Art and Future Directions in the Era of Personalized Medicine.
PMID:21858794
On the sequence-directed nature of human gene mutation: the role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease.
PMID:21853507
Control of striatal signaling by g protein regulators.
PMID:21852966
Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?
PMID:21850458
Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes.
PMID:21850457
Dynamic interactions between transposable elements and their hosts.
PMID:21850042
Augmented expression of glia maturation factor in Alzheimer's disease.
PMID:21835226
Stable folding core in the folding transition state of an alpha-helical integral membrane protein.
PMID:21831834
Genetic testing for early detection of individuals at risk of coronary heart disease and monitoring response to therapy: challenges and promises.
PMID:21830102
Organization and molecular evolution of CENP-A--associated satellite DNA families in a basal primate genome.
PMID:21828373
Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition.
PMID:21822284
tRNA genes protect a reporter gene from epigenetic silencing in mouse cells.
PMID:21822054
Where splicing joins chromatin.
PMID:21818411
A comprehensively molecular haplotype-resolved genome of a European individual.
PMID:21813624
The Human Immunopeptidome Project, a suggestion for yet another postgenome next big thing.
PMID:21813418
GFP-based evaluation system of recombinant expression through the secretory pathway in insect cells and its application to the extracellular domains of class C GPCRs.
PMID:21805523
REMiner: a tool for unbiased mining and analysis of repetitive elements and their arrangement structures of large chromosomes.
PMID:21803149
LINE-1 elements in structural variation and disease.
PMID:21801021
The Anolis lizard genome: an amniote genome without isochores.
PMID:21795750
The evolution of the search for novel genes in mammalian sex determination: from mice to men.
PMID:21795084
Variables and strategies in development of therapeutic post-transcriptional gene silencing agents.
PMID:21785698
Parasites or cohabitants: cruel omnipresent usurpers or creative "éminences grises"?
PMID:21785696
Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly.
PMID:21785424
Evolutionary patterns of RNA-based duplication in non-mammalian chordates.
PMID:21779328
H3K9me3-binding proteins are dispensable for SETDB1/H3K9me3-dependent retroviral silencing.
PMID:21774827
Rampant horizontal transfer of SPIN transposons in squamate reptiles.
PMID:21771716
Bias detection and correction in RNA-Sequencing data.
PMID:21771300
Exon 11 skipping of E-cadherin RNA downregulates its expression in head and neck cancer cells.
PMID:21764905
Phylomedicine: an evolutionary telescope to explore and diagnose the universe of disease mutations.
PMID:21764165
NCI, NHLBI first international consensus conference on late effects after pediatric hematopoietic cell transplantation: etiology and pathogenesis of late effects after HCT performed in childhood--methodologic challenges.
PMID:21763253
Targeting epigenetics through histone deacetylase inhibitors in acute lymphoblastic leukemia.
PMID:21762078
An Alu repeat-mediated genomic GCNT2 deletion underlies congenital cataracts and adult i blood group.
PMID:21761136
Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana.
PMID:21750662
Genetic evolution of pancreatic cancer: lessons learnt from the pancreatic cancer genome sequencing project.
PMID:21749982
Key features of the two-intron Saccharomyces cerevisiae gene SUS1 contribute to its alternative splicing.
PMID:21749978
The immunoglobulin super family protein RIG-3 prevents synaptic potentiation and regulates Wnt signaling.
PMID:21745641
Construction of an American mink bacterial artificial chromosome (BAC) library and sequencing candidate genes important for the fur industry.
PMID:21740547
Analysis of muscle and ovary transcriptome of Sus scrofa: assembly, annotation and marker discovery.
PMID:21729922
Arterial thrombus formation in cardiovascular disease.
PMID:21727917
Transcriptional variations mediated by an alternative promoter of the FPR3 gene.
PMID:21717223
Developmental functions of piRNAs and transposable elements: a Drosophila point-of-view.
PMID:21712652
Breakpoint characterization of large deletions in EXT1 or EXT2 in 10 multiple osteochondromas families.
PMID:21703028
Sequencing technologies and genome sequencing.
PMID:21698376
Positive selection shaped the convergent evolution of independently expanded kallikrein subfamilies expressed in mouse and rat saliva proteomes.
PMID:21695125
Inferring causative variants in microRNA target sites.
PMID:21693556
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.
PMID:21685127
Contrasting 5' and 3' evolutionary histories and frequent evolutionary convergence in Meis/hth gene structures.
PMID:21680890
Advantages of mRNA display selections over other selection techniques for investigation of protein-protein interactions.
PMID:21679115
Current status of genome-wide association studies in cancer.
PMID:21678065
SNPs occur in regions with less genomic sequence conservation.
PMID:21674007
Origin and evolution of SINEs in eukaryotic genomes.
PMID:21673742
Advances in epigenetics and epigenomics for neurodegenerative diseases.
PMID:21671162
Three tiers of genome evolution in reptiles.
PMID:21669810
Global methylation in exposure biology and translational medical science.
PMID:21669556
TSIDER1, a short and non-autonomous Salivarian trypanosome-specific retroposon related to the ingi6 subclade.
PMID:21664383
Alu-specific microhomology-mediated deletion of the final exon of SPAST in three unrelated subjects with hereditary spastic paraplegia.
PMID:21659953
Targeting RAD51 phosphotyrosine-315 to prevent unfaithful recombination repair in BCR-ABL1 leukemia.
PMID:21653319
Codon usage in vertebrates is associated with a low risk of acquiring nonsense mutations.
PMID:21651781
Population biobanks and returning individual research results: mission impossible or new directions?
PMID:21643981
A genetic and structural study of genome rearrangements mediated by high copy repeat Ty1 elements.
PMID:21637792
Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish.
PMID:21637758
Mutations in retrotransposon AtCOPIA4 compromises resistance to Hyaloperonospora parasitica in Arabidopsis thaliana.
PMID:21637617
Identification and detection of a novel human endogenous retrovirus-related gene, and structural characterization of its related elements.
PMID:21637440
Effects of L1-ORF2 fragments on green fluorescent protein gene expression.
PMID:21637438
Allele-specific, age-dependent and BMI-associated DNA methylation of human MCHR1.
PMID:21637341
Identification of tammar wallaby SIRH12, derived from a marsupial-specific retrotransposition event.
PMID:21636603
Comparative studies of de novo assembly tools for next-generation sequencing technologies.
PMID:21636596
Retrotransposition of marked SVA elements by human L1s in cultured cells.
PMID:21636526
Reading TE leaves: new approaches to the identification of transposable element insertions.
PMID:21632748
A reduced representation approach to population genetic analyses and applications to human evolution.
PMID:21628451
Identification and functional characterization in vivo of a novel splice variant of LDLR in rhesus macaques.
PMID:21628398
Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates.
PMID:21627776
Coexistence of NtCENH3 and two retrotransposons in tobacco centromeres.
PMID:21626175
Exploiting nucleotide composition to engineer promoters.
PMID:21625601
The latrophilins, "split-personality" receptors.
PMID:21618826
Human piRNAs are under selection in Africans and repress transposable elements.
PMID:21613236
Landscape of next-generation sequencing technologies.
PMID:21612267
Efficient fitting of conductance-based model neurons from somatic current clamp.
PMID:21611777
An shRNA-based screen of splicing regulators identifies SFRS3 as a negative regulator of IL-1β secretion.
PMID:21611201
Compensatory signals associated with the activation of human GC 5' splice sites.
PMID:21609956
Novel transposable elements from Anopheles gambiae.
PMID:21605407
Functional consequences of bidirectional promoters.
PMID:21601935
Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.
PMID:21596777
Genomic medicine and neurological disease.
PMID:21594611
Why is it crucial to reintegrate pathology into cancer research?
PMID:21590787
The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships.
PMID:21589882
Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure.
PMID:21575268
Fosmid library end sequencing reveals a rarely known genome structure of marine shrimp Penaeus monodon.
PMID:21575266
Distributions of transposable elements reveal hazardous zones in mammalian introns.
PMID:21573203
Nanopore Sequencing: Electrical Measurements of the Code of Life.
PMID:21572978
Evolutionary conservation of the functional modularity of primate and murine LINE-1 elements.
PMID:21572950
Strategic approaches to unraveling genetic causes of cardiovascular diseases.
PMID:21566222
ComB: SNP calling and mapping analysis for color and nucleotide space platforms.
PMID:21563978
Comparative studies of vertebrate lipoprotein lipase: a key enzyme of very low density lipoprotein metabolism.
PMID:21561822
L1 hybridization enrichment: a method for directly accessing de novo L1 insertions in the human germline.
PMID:21560187
Comparing de novo genome assembly: the long and short of it.
PMID:21559467
Discovering how environmental exposures alter genes could lead to new treatments for chronic illnesses.
PMID:21555469
Effect of reverse transcriptase inhibitors on LINE-1 and Ty1 reverse transcriptase activities and on LINE-1 retrotransposition.
PMID:21545744
Different transcription activity of HERV-K LTR-containing and LTR-lacking genes of the KIAA1245/NBPF gene subfamily.
PMID:21544646
Variation in array size, monomer composition and expression of the macrosatellite DXZ4.
PMID:21544201
A revised nomenclature for transcribed human endogenous retroviral loci.
PMID:21542922
Mind the dbGAP: the application of data mining to identify biological mechanisms.
PMID:21540468
RNAi: a potential new class of therapeutic for human genetic disease.
PMID:21537948
Towards a more functional concept of causality in cancer research.
PMID:21537385
An automated homology-based approach for identifying transposable elements.
PMID:21535899
Chromatin immunoprecipitation to analyze DNA binding sites of HMGA2.
PMID:21533145
Two-stepping through time: mammals and viruses.
PMID:21531564
B7-h2 is a costimulatory ligand for CD28 in human.
PMID:21530327
Strong human endogenous retrovirus-specific T cell responses are associated with control of HIV-1 in chronic infection.
PMID:21525339
Profiling the proteome in renal transplantation.
PMID:21520424
Precursor miR-886, a novel noncoding RNA repressed in cancer, associates with PKR and modulates its activity.
PMID:21518807
Size matters: versatile use of PiggyBac transposons as a genetic manipulation tool.
PMID:21516337
Cell surface signaling molecules in the control of immune responses: a tide model.
PMID:21511182
Free-solution electrophoretic separations of DNA-drag-tag conjugates on glass microchips with no polymer network and no loss of resolution at increased electric field strength.
PMID:21500207
Cell-based Models for Discovery of Pharmacogenomic Markers of Anticancer Agent Toxicity.
PMID:21499559
Chromatin organization in sperm may be the major functional consequence of base composition variation in the human genome.
PMID:21490963
Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma.
PMID:21490616
A comparison of genomic copy number calls by Partek Genomics Suite, Genotyping Console and Birdsuite algorithms to quantitative PCR.
PMID:21489293
Alzheimer's genetics in the GWAS era: a continuing story of 'replications and refutations'.
PMID:21487954
Production and partial purification of membrane proteins using a liposome-supplemented wheat cell-free translation system.
PMID:21481249
The impact of next-generation sequencing on genomics.
PMID:21477781
Engineering scalable biological systems.
PMID:21468204
Natural genetic variation caused by small insertions and deletions in the human genome.
PMID:21460062
Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome.
PMID:21460061
A genome-wide analysis of FRT-like sequences in the human genome.
PMID:21448289
XIST RNA and architecture of the inactive X chromosome: implications for the repeat genome.
PMID:21447818
Both size and GC-content of minimal introns are selected in human populations.
PMID:21437290
Macoilin, a conserved nervous system-specific ER membrane protein that regulates neuronal excitability.
PMID:21437263
MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes.
PMID:21436881
Toward a better understanding of ADHD: LPHN3 gene variants and the susceptibility to develop ADHD.
PMID:21432600
Overview of the development of personalized genomic medicine and surgery.
PMID:21424870
HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2.
PMID:21423673
Hypomethylation of intragenic LINE-1 represses transcription in cancer cells through AGO2.
PMID:21423624
The human microbiome and surgical disease.
PMID:21422915
Medical DNA sequencing.
PMID:21415728
Homolog-specific PCR primer design for profiling splice variants.
PMID:21415011
Interactome networks and human disease.
PMID:21414488
The struggle for life of the genome's selfish architects.
PMID:21414203
Chromosome conformation capture uncovers potential genome-wide interactions between human conserved non-coding sequences.
PMID:21408183
Fast identification and removal of sequence contamination from genomic and metagenomic datasets.
PMID:21408061
Genome-virome interactions: examining the role of common viral infections in complex disease.
PMID:21407242
Making sense of cancer genomic data.
PMID:21406553
Ocular proteomics with emphasis on two-dimensional gel electrophoresis and mass spectrometry.
PMID:21406065
Intrinsic restriction activity by apolipoprotein B mRNA editing enzyme APOBEC1 against the mobility of autonomous retrotransposons.
PMID:21398638
Improved integration time estimation of endogenous retroviruses with phylogenetic data.
PMID:21394200
Molecular evolution of immunoglobulin superfamily genes in primates.
PMID:21390552
Recent amplification of the kangaroo endogenous retrovirus, KERV, limited to the centromere.
PMID:21389136
InTRONs in biotech.
PMID:21387124
Minimal absent words in prokaryotic and eukaryotic genomes.
PMID:21386877
DNABIT Compress - Genome compression algorithm.
PMID:21383923
Identification of a unique library of complex, but ordered, arrays of repetitive elements in the human genome and implication of their potential involvement in pathobiology.
PMID:21376035
Phylogenetic and functional characterization of the hAT transposon superfamily.
PMID:21368277
Comprehensive analysis of alternative splicing and functionality in neuronal differentiation of P19 cells.
PMID:21365003
Effect of the transposable element environment of human genes on gene length and expression.
PMID:21362639
Identification of CD44 as a surface biomarker for drug resistance by surface proteome signature technology.
PMID:21357442
Integrative genomic analysis of human ribosomal DNA.
PMID:21355038
Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.
PMID:21353298
Polygenic modeling of genome-wide association studies: an application to prostate and breast cancer.
PMID:21348634
A Comparative Study of Metabolic Network Topology between a Pathogenic and a Non-Pathogenic Bacterium for Potential Drug Target Identification.
PMID:21347179
Nonsynonymous substitution rate (Ka) is a relatively consistent parameter for defining fast-evolving and slow-evolving protein-coding genes.
PMID:21342519
Substitution patterns are under different influences in primates and rodents.
PMID:21339508
Horizontal gene transfer between bacteria and animals.
PMID:21334091
Genomics for disease treatment and prevention.
PMID:21333845
Systems biology: the next frontier for bioinformatics.
PMID:21331364
Illuminating transcription pathways using fluorescent reporter genes and yeast functional genomics.
PMID:21326895
ZBED6: The birth of a new transcription factor in the common ancestor of placental mammals.
PMID:21326889
Advances of genomic science and systems biology in renal transplantation: a review.
PMID:21318414
Methylation at global LINE-1 repeats in human blood are affected by gender but not by age or natural hormone cycles.
PMID:21311577
Restless genomes humans as a model organism for understanding host-retrotransposable element dynamics.
PMID:21310298
Charting a course for genomic medicine from base pairs to bedside.
PMID:21307933
A decade's perspective on DNA sequencing technology.
PMID:21307932
Initial impact of the sequencing of the human genome.
PMID:21307931
Structural properties of the Caenorhabditis elegans neuronal network.
PMID:21304930
The sociobiology of molecular systems.
PMID:21301472
Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens.
PMID:21300862
A detailed comparative analysis on the overall codon usage patterns in hepatitis A virus.
PMID:21296111
Fluoride-cleavable, fluorescently labelled reversible terminators: synthesis and use in primer extension.
PMID:21294195
Functional relevance of CpG island length for regulation of gene expression.
PMID:21288871
Genome-wide association studies of sleep disorders.
PMID:21285061
Comparative and demographic analysis of orang-utan genomes.
PMID:21270892
Vertebrate endothelial lipase: comparative studies of an ancient gene and protein in vertebrate evolution.
PMID:21267636
Gene Expression Profiling via Multigene Concatemers.
PMID:21267445
A novel compression tool for efficient storage of genome resequencing data.
PMID:21266471
Cancer evolution and individual susceptibility.
PMID:21264404
The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing.
PMID:21264352
Analysis of human P[4]G2 rotavirus strains isolated in Brazil reveals codon usage bias and strong compositional constraints.
PMID:21255687
FUBP3 interacts with FGF9 3' microsatellite and positively regulates FGF9 translation.
PMID:21252297
Cutting-edge issues in primary biliary cirrhosis.
PMID:21243445
Chromosome size in diploid eukaryotic species centers on the average length with a conserved boundary.
PMID:21239390
Transcriptional control of the human glucocorticoid receptor: identification and analysis of alternative promoter regions.
PMID:21234764
Genomic fluidity: an integrative view of gene diversity within microbial populations.
PMID:21232151
A systematic evaluation of expression of HERV-W elements; influence of genomic context, viral structure and orientation.
PMID:21226900
Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array.
PMID:21211017
SeqWare Query Engine: storing and searching sequence data in the cloud.
PMID:21210981
Impact of Alu repeats on the evolution of human p53 binding sites.
PMID:21208455
Gene inactivation and its implications for annotation in the era of personal genomics.
PMID:21205862
From synthetic genome to creation of life.
PMID:21204002
The good viruses: viral mutualistic symbioses.
PMID:21200397
Pharmacogenetics of drug metabolizing enzymes and transporters: effects on pharmacokinetics and pharmacodynamics of anticancer agents.
PMID:21194402
Systems approaches to molecular cancer diagnostics.
PMID:21189224
Repetitive element hypomethylation in blood leukocyte DNA and cancer incidence, prevalence, and mortality in elderly individuals: the Normative Aging Study.
PMID:21188491
Epigenomics in cancer management.
PMID:21188117
Insertion sequence inversions mediated by ectopic recombination between terminal inverted repeats.
PMID:21187977
The solute carrier families have a remarkably long evolutionary history with the majority of the human families present before divergence of Bilaterian species.
PMID:21186191
RISCI--Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes.
PMID:21184688
Molecular characterization, genomic distribution and evolutionary dynamics of Short INterspersed Elements in the termite genome.
PMID:21184097
Defining the transcriptome and proteome in three functionally different human cell lines.
PMID:21179022
The making of a photosynthetic animal.
PMID:21177950
T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data.
PMID:21177644
Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast.
PMID:21177495
NF-κB addiction and its role in cancer: 'one size does not fit all'.
PMID:21170083
Haplotype-resolved genome sequencing of a Gujarati Indian individual.
PMID:21170042
Quantitative analysis of culture using millions of digitized books.
PMID:21163965
Characterization of a Xenopus tropicalis endogenous retrovirus with developmental and stress-dependent expression.
PMID:21159866
Nanotribology results show that DNA forms a mechanically resistant 2D network in metaphase chromatin plates.
PMID:21156137
Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi.
PMID:21156082
The effect of next-generation sequencing technology on complex trait research.
PMID:21155765
The reverse transcription inhibitor abacavir shows anticancer activity in prostate cancer cell lines.
PMID:21151977
Mugsy: fast multiple alignment of closely related whole genomes.
PMID:21148543
Genetic cardiovascular risk prediction: will we get there?
PMID:21147729
Dissecting DNA hypermethylation in cancer.
PMID:21146531
Application of Wavelet Packet Transform to detect genetic polymorphisms by the analysis of inter-Alu PCR patterns.
PMID:21143911
The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome.
PMID:21143807
Comparative genetic approaches to the evolution of human brain and behavior.
PMID:21140466
Characterizations and validations of novel antibodies toward translational research.
PMID:21137080
Applications of protein microarrays for biomarker discovery.
PMID:21136793
Mutation type is not clinically useful in predicting prognosis in hypertrophic cardiomyopathy.
PMID:21135372
Quantum steps to better sequencing.
PMID:21131989
Alu repeat discovery and characterization within human genomes.
PMID:21131385
AID: a riddle wrapped in a mystery inside an enigma.
PMID:21128007
The evolution and diversity of DNA transposons in the genome of the Lizard Anolis carolinensis.
PMID:21127169
A novel web-based TinT application and the chronology of the Primate Alu retroposon activity.
PMID:21126360
Endogenous viral elements in animal genomes.
PMID:21124940
Deciphering the code for retroviral integration target site selection.
PMID:21124862
The reference human genome demonstrates high risk of type 1 diabetes and other disorders.
PMID:21121051
Coordinated genome-wide modifications within proximal promoter cis-regulatory elements during vertebrate evolution.
PMID:21118975
LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes.
PMID:21118513
Novel intron markers to study the phylogeny of closely related mammalian species.
PMID:21118501
Progress and promise of genome-wide association studies for human complex trait genetics.
PMID:21115973
Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict.
PMID:21115821
Universal platform for quantitative analysis of DNA transposition.
PMID:21110848
Unraveling the genetics of otitis media: from mouse to human and back again.
PMID:21107580
Protection of HIV neutralizing aptamers against rectal and vaginal nucleases: implications for RNA-based therapeutics.
PMID:21106536
Limitations of next-generation genome sequence assembly.
PMID:21102452
Biguanide metformin acts on tau phosphorylation via mTOR/protein phosphatase 2A (PP2A) signaling.
PMID:21098287
Sharing clinical research data in the United States under the Health Insurance Portability and Accountability Act and the Privacy Rule.
PMID:21092099
The genetics of type 2 diabetes: what have we learned from GWAS?
PMID:21091714
Systematic analysis of gene expression level with tissue-specificity, function and protein subcellular localization in human transcriptome.
PMID:21088908
CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins.
PMID:21087992
The DNA methylome of human peripheral blood mononuclear cells.
PMID:21085693
Genome-wide analysis of copy number variation in type 1 diabetes.
PMID:21085585
L1 retrotransposition in neurons is modulated by MeCP2.
PMID:21085180
Identification of novel endogenous betaretroviruses which are transcribed in the bovine placenta.
PMID:21084469
Patient profiling for treatment toxicity: potential use of clinical and genomic factors.
PMID:21080116
Grand challenge commentary: The chemistry of a dynamic genome.
PMID:21079591
Grand challenge commentary: Informative diagnostics for personalized medicine.
PMID:21079587
International Union of Basic and Clinical Pharmacology. LXXIX. Cannabinoid receptors and their ligands: beyond CB₁ and CB₂.
PMID:21079038
Targeting of highly conserved Dengue virus sequences with anti-Dengue virus trans-splicing group I introns.
PMID:21078188
Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome.
PMID:21078170
Linkage disequilibrium reveals different demographic history in egg laying chickens.
PMID:21078133
Pseudokinases-remnants of evolution or key allosteric regulators?
PMID:21074407
Characterization of L1 retrotransposition with high-throughput dual-luciferase assays.
PMID:21071410
Evolution of CD33-related siglecs: regulating host immune functions and escaping pathogen exploitation?
PMID:21070233
Analysis of in situ pre-mRNA targets of human splicing factor SF1 reveals a function in alternative splicing.
PMID:21062807
Stress-induced activation of heterochromatic transcription.
PMID:21060865
How many antiviral small interfering RNAs may be encoded by the mammalian genomes?
PMID:21059241
Translating genomics into improved healthcare.
PMID:21056961
The molecular biology, biochemistry, and physiology of human steroidogenesis and its disorders.
PMID:21051590
Nucleic acid chaperone properties of ORF1p from the non-LTR retrotransposon, LINE-1.
PMID:21045547
Whole transcriptome analysis of the fasting and fed Burmese python heart: insights into extreme physiological cardiac adaptation.
PMID:21045117
Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data.
PMID:21044359
Epigenetic control of retrotransposon expression in human embryonic stem cells.
PMID:21041477
RBPDB: a database of RNA-binding specificities.
PMID:21036867
Discovery-driven research and bioinformatics in nuclear receptor and coregulator signaling.
PMID:21029773
Genomics: In search of rare human variants.
PMID:20981085
Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans.
PMID:20980553
Feedback inhibition of L1 and alu retrotransposition through altered double strand break repair kinetics.
PMID:20979631
Genome-wide comparative gene family classification.
PMID:20976221
RNA processing and export.
PMID:20961978
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.
PMID:20959003
Human brain evolution: harnessing the genomics (r)evolution to link genes, cognition, and behavior.
PMID:20955931
An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification.
PMID:20955585
Genetics in schizophrenia: where are we and what next?
PMID:20954426
Targeting energy expenditure via fuel switching and beyond.
PMID:20953861
Marine genomics: at the interface of marine microbial ecology and biodiscovery.
PMID:20953417
Characterization of LINE-1 ribonucleoprotein particles.
PMID:20949108
Association of nuclear localization of a long interspersed nuclear element-1 protein in breast tumors with poor prognostic outcomes.
PMID:20948976
Data structures and compression algorithms for high-throughput sequencing technologies.
PMID:20946637
Epigenetic modifications in pluripotent and differentiated cells.
PMID:20944600
Discovery and characterization of mammalian endogenous parvoviruses.
PMID:20943964
Technological innovation revisited.
PMID:20943599
Pharmacogenetics of Anti-Diabetes Drugs.
PMID:20936101
The evolution and expression of the snaR family of small non-coding RNAs.
PMID:20935053
Diagnosis and monitoring of abdominal aortic aneurysm: current status and future prospects.
PMID:20932435
Mapping genes that predict treatment outcome in admixed populations.
PMID:20921971
The redox basis of epigenetic modifications: from mechanisms to functional consequences.
PMID:20919933
Global methylation profiles in DNA from different blood cell types.
PMID:20890131
Rat traps: filling the toolbox for manipulating the rat genome.
PMID:20887642
Post-genomics and skin inflammation.
PMID:20886018
DNA transposons: nature and applications in genomics.
PMID:20885819
Orphan CpG islands identify numerous conserved promoters in the mammalian genome.
PMID:20885785
U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation.
PMID:20881964
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences.
PMID:20880995
GeneWaltz--A new method for reducing the false positives of gene finding.
PMID:20875138
CAGE: Combinatorial Analysis of Gene-cluster Evolution.
PMID:20874406
Relating underrepresented genomic DNA patterns and tiRNAs: the rule behind the observation and beyond.
PMID:20860791
At the edge of translation - materials to program cells for directed differentiation.
PMID:20860763
MetMap enables genome-scale Methyltyping for determining methylation states in populations.
PMID:20856582
SeqAnt: a web service to rapidly identify and annotate DNA sequence variations.
PMID:20854673
Predictors of global methylation levels in blood DNA of healthy subjects: a combined analysis.
PMID:20846947
Genome-scale approaches to investigate oxidative DNA damage.
PMID:20838563
In silico models of cancer.
PMID:20836040
RNA Genes: Retroelements and Virally Retroposable microRNAs in Human Embryonic Stem Cells.
PMID:20835360
Defining genetic risk for graft-versus-host disease and mortality following allogeneic hematopoietic stem cell transplantation.
PMID:20827186
Automated construction and analysis of the design space for biochemical systems.
PMID:20823298
Sequencing and analysis of an Irish human genome.
PMID:20822512
Ten years of genetics and genomics: what have we achieved and where are we heading?
PMID:20820184
Plasmodium immunomics.
PMID:20816843
Prediction of alternatively spliced exons using support vector machines.
PMID:20815140
Epigenetic regulatory mechanisms associated with infertility.
PMID:20814440
Quality, quantity and harmony: the DataSHaPER approach to integrating data across bioclinical studies.
PMID:20813861
Towards a complete resolution of the genetic architecture of disease.
PMID:20813421
Phenylbutyric acid suppresses protein accumulation-mediated ER stress in retrovirus-infected astrocytes and delays onset of paralysis in infected mice.
PMID:20813146
Mobilizing diversity: transposable element insertions in genetic variation and disease.
PMID:20813032
Integrating common and rare genetic variation in diverse human populations.
PMID:20811451
Reference-unbiased copy number variant analysis using CGH microarrays.
PMID:20802225
Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species.
PMID:20798934
Current concepts of follicle-stimulating hormone receptor gene regulation.
PMID:20739665
Individualized medicine 2010.
PMID:20731747
The Nobel Prize as a Reward Mechanism in the Genomics Era: Anonymous Researchers, Visible Managers and the Ethics of Excellence.
PMID:20730106
A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk.
PMID:20729854
Visualization and genetic analysis of alternative splicing regulation in vivo using fluorescence reporters in transgenic Caenorhabditis elegans.
PMID:20725066
Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
PMID:20724440
Use of chromosome walking in discovery of single-nucleotide polymorphism in noncoding regions of a candidate actin gene in Pinus radiata.
PMID:20720301
Recent expansion of a new Ingi-related clade of Vingi non-LTR retrotransposons in hedgehogs.
PMID:20716533
Distinguishing between cancer driver and passenger gene alteration candidates via cross-species comparison: a pilot study.
PMID:20707908
Human endogenous retroviruses and multiple sclerosis: innocent bystanders or disease determinants?
PMID:20696240
Slingshot: a PiggyBac based transposon system for tamoxifen-inducible 'self-inactivating' insertional mutagenesis.
PMID:20688953
Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells.
PMID:20686575
Genomic signatures of germline gene expression.
PMID:20686123
Chromosomal integration of adenoviral vector DNA in vivo.
PMID:20686029
Genome-wide detection and characterization of endogenous retroviruses in Bos taurus.
PMID:20686017
Crystal structure of chiral gammaPNA with complementary DNA strand: insights into the stability and specificity of recognition and conformational preorganization.
PMID:20681704
hHSS1: a novel secreted factor and suppressor of glioma growth located at chromosome 19q13.33.
PMID:20680400
A new framework for studying the isochore evolution: estimation of the equilibrium GC content based on the temporal mutation rate model.
PMID:20675617
Variable histone modifications at the A(vy) metastable epiallele.
PMID:20671424
Inhibition of superinfection and the evolution of viral latency.
PMID:20660193
Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D.
PMID:20648672
Divergence, demography and gene loss along the human lineage.
PMID:20643734
Tissue-specific regulatory regions of the PTH gene localized by novel chromosome 11 rearrangement breakpoints in a parathyroid adenoma.
PMID:20641034
Epigenetic effects of shiftwork on blood DNA methylation.
PMID:20636218
Annotating non-coding regions of the genome.
PMID:20628352
Choosing a genome browser for a Model Organism Database: surveying the maize community.
PMID:20627860
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.
PMID:20626842
PiggyBac-ing on a primate genome: novel elements, recent activity and horizontal transfer.
PMID:20624734
Mining non-model genomic libraries for microsatellites: BAC versus EST libraries and the generation of allelic richness.
PMID:20624300
Breakpoint determination of 15 large deletions in Peutz-Jeghers subjects.
PMID:20623358
Advances in Bioconjugation.
PMID:20622973
Integrating Epigenomics into Pharmacogenomic Studies.
PMID:20622972
Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition.
PMID:20622855
Proteogenomics to discover the full coding content of genomes: a computational perspective.
PMID:20620248
Demethylation by 5-aza-2'-deoxycytidine in colorectal cancer cells targets genomic DNA whilst promoter CpG island methylation persists.
PMID:20618997
LTR retroelements in the genome of Daphnia pulex.
PMID:20618961
Circulation Research and human genetic studies.
PMID:20616334
Long-range function of an intergenic retrotransposon.
PMID:20615953
Different integration site structures between L1 protein-mediated retrotransposition in cis and retrotransposition in trans.
PMID:20615209
The impact of CpG island on defining transcriptional activation of the mouse L1 retrotransposable elements.
PMID:20613872
Accidental amplification and inactivation of a methyltransferase gene eliminates cytosine methylation in Mycosphaerella graminicola.
PMID:20610411
Miniature inverted-repeat transposable elements of Stowaway are active in potato.
PMID:20610409
Probing the probes: fitness factors for small molecule tools.
PMID:20609406
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences.
PMID:20609256
Gene therapy in glaucoma-part I: Basic mechanisms and molecular genetics.
PMID:20606864
Genetic variation of copia suppression in Drosophila melanogaster.
PMID:20606692
Gene transfer efficiency and genome-wide integration profiling of Sleeping Beauty, Tol2, and piggyBac transposons in human primary T cells.
PMID:20606646
Natural mutagenesis of human genomes by endogenous retrotransposons.
PMID:20603005
Mobile interspersed repeats are major structural variants in the human genome.
PMID:20602999
LINE-1 retrotransposition activity in human genomes.
PMID:20602998
All y'all need to know 'bout retroelements in cancer.
PMID:20600922
Origin and evolution of LINE-1 derived "half-L1" retrotransposons (HAL1).
PMID:20600705
Comparative studies of mammalian acid lipases: Evidence for a new gene family in mouse and rat (Lipo).
PMID:20598663
Hydrophobic Fractionation Enhances Novel Protein Detection by Mass Spectrometry in Triple Negative Breast Cancer.
PMID:20596302
Mammalian evolution may not be strictly bifurcating.
PMID:20591845
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution.
PMID:20591532
Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.
PMID:20591181
Patents in genomics and human genetics.
PMID:20590431
Five classic articles in genetic epidemiology.
PMID:20589189
Long-term stability of demethylation after transient exposure to 5-aza-2'-deoxycytidine correlates with sustained RNA polymerase II occupancy.
PMID:20587535
Estimating enrichment of repetitive elements from high-throughput sequence data.
PMID:20584328
Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts.
PMID:20573210
Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm.
PMID:20571085
The role of proteomics in the diagnosis of chorioamnionitis and early-onset neonatal sepsis.
PMID:20569812
Molecular diagnostics for personal medicine using a nanopore.
PMID:20564464
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology.
PMID:20562415
A new era in clinical genetic testing for hypertrophic cardiomyopathy.
PMID:20559996
Pharmacogenetics of heart failure: evidence, opportunities, and challenges for cardiovascular pharmacogenomics.
PMID:20559955
Imaging and modeling of myocardial metabolism.
PMID:20559785
CLIA-tested genetic variants on commercial SNP arrays: potential for incidental findings in genome-wide association studies.
PMID:20556870
Gene polymorphisms and their role in epilepsy treatment and prognosis.
PMID:20556360
A novel FcεRIβ-chain truncation regulates human mast cell proliferation and survival.
PMID:20554927
Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution.
PMID:20551039
Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.
PMID:20548960
Shotgun proteomics identifies proteins specific for acute renal transplant rejection.
PMID:20543976
Organization of Biomedical Data for Collaborative Scientific Research: A Research Information Management System.
PMID:20543892
Architecture of the Tn7 posttransposition complex: an elaborate nucleoprotein structure.
PMID:20538004
Characteristics of transposable element exonization within human and mouse.
PMID:20532223
Activity-based protein profiling identifies a host enzyme, carboxylesterase 1, which is differentially active during hepatitis C virus replication.
PMID:20530478
Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes.
PMID:20530252
SeLOX--a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems.
PMID:20529878
Endogenous retroviruses in trophoblast differentiation and placental development.
PMID:20528833
The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates.
PMID:20525173
Leveraging human genetics to develop future therapeutic strategies in rheumatoid arthritis.
PMID:20510233
Assembly of large genomes using second-generation sequencing.
PMID:20508146
A single amino acid substitution confers enhanced methylation activity of mammalian Dnmt3b on chromatin DNA.
PMID:20507910
Utility of sequenced genomes for microsatellite marker development in non-model organisms: a case study of functionally important genes in nine-spined sticklebacks (Pungitius pungitius).
PMID:20507571
ALDH1L2 is the mitochondrial homolog of 10-formyltetrahydrofolate dehydrogenase.
PMID:20498374
The mutational spectrum of non-CpG DNA varies with CpG content.
PMID:20498119
Mechanisms for nonrecurrent genomic rearrangements associated with CMT1A or HNPP: rare CNVs as a cause for missing heritability.
PMID:20493460
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes.
PMID:20488934
Bs1, a new chimeric gene formed by retrotransposon-mediated exon shuffling in maize.
PMID:20488894
Genomics and genetics of gonadotropin beta-subunit genes: Unique FSHB and duplicated LHB/CGB loci.
PMID:20488225
Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly.
PMID:20479877
Effects of Alu elements on global nucleosome positioning in the human genome.
PMID:20478020
LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes?
PMID:20471112
Biophysical characterization of recombinant proteins: a key to higher structural genomics success.
PMID:20466062
Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions.
PMID:20462415
A total of 220 patients with autosomal dominant spastic paraplegia do not display mutations in the SLC33A1 gene (SPG42).
PMID:20461110
Colloquium paper: in the light of evolution IV: the human condition.
PMID:20460311
Modeling non-uniformity in short-read rates in RNA-Seq data.
PMID:20459815
A database and API for variation, dense genotyping and resequencing data.
PMID:20459810
Recombination-associated sequence homogenization of neighboring Alu elements: signature of nonallelic gene conversion.
PMID:20453015
The enemy within: dormant retroviruses awaken.
PMID:20448571
Colloquium paper: footprints of nonsentient design inside the human genome.
PMID:20445101
A study of alternative splicing in the pig.
PMID:20444244
Epigenetic regulation of a murine retrotransposon by a dual histone modification mark.
PMID:20442873
Between a chicken and a grape: estimating the number of human genes.
PMID:20441615
Computational challenges in the analysis of ancient DNA.
PMID:20441577
Using genetics to deliver personalized SLE therapy-a realistic prospect?
PMID:20440286
From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences.
PMID:20433708
The genome of the Western clawed frog Xenopus tropicalis.
PMID:20431018
The Rhox genes.
PMID:20430877
Beyond desensitization: physiological relevance of arrestin-dependent signaling.
PMID:20427692
Genome-wide association studies: contribution of genomics to understanding blood pressure and essential hypertension.
PMID:20425154
Curve-based multivariate distance matrix regression analysis: application to genetic association analyses involving repeated measures.
PMID:20423962
Mammalian carboxylesterase 3: comparative genomics and proteomics.
PMID:20422440
Universal global imprints of genome growth and evolution--equivalent length and cumulative mutation density.
PMID:20418954
Candidate gene association studies: successes and failures.
PMID:20417090
SVA retrotransposons: Evolution and genetic instability.
PMID:20416380
The application of mass-spectrometry-based protein biomarker discovery to theragnostics.
PMID:20406221
Testicular postgenomics: targeting the regulation of spermatogenesis.
PMID:20403865
Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum.
PMID:20403159
Analysis of SRrp86-regulated alternative splicing: control of c-Jun and IκBβ activity.
PMID:20400856
Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome.
PMID:20398319
Mendelian disorders and multifactorial traits: the big divide or one for all?
PMID:20395971
A complex task? Direct modulation of transcription factors with small molecules.
PMID:20395165
The transcript repeat element: the human Alu sequence as a component of gene networks influencing cancer.
PMID:20393868
Sequence composition similarities with the 7SL RNA are highly predictive of functional genomic features.
PMID:20392819
Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome.
PMID:20385588
A splicing-independent function of SF2/ASF in microRNA processing.
PMID:20385090
A human-specific de novo protein-coding gene associated with human brain functions.
PMID:20376170
Alternative splicing and evolution: diversification, exon definition and function.
PMID:20376054
De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis.
PMID:20375099
The past, present, and future of direct-to-consumer genetic tests.
PMID:20373667
Personal genomes in progress: from the human genome project to the personal genome project.
PMID:20373666
Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers.
PMID:20363979
Multiple personal genomes await.
PMID:20360717
Human genome at ten: The sequence explosion.
PMID:20360711
Transcription of mouse Sp2 yields alternatively spliced and sub-genomic mRNAs in a tissue- and cell-type-specific fashion.
PMID:20353838
A clustered set of three Sp-family genes is ancestral in the Metazoa: evidence from sequence analysis, protein domain structure, developmental expression patterns and chromosomal location.
PMID:20353601
Assessment of collaboration and interoperability in an information management system to support bioscience research.
PMID:20351900
A general framework for studying genetic effects and gene-environment interactions with missing data.
PMID:20348396
A LINE-1 component to human aging: do LINE elements exact a longevity cost for evolutionary advantage?
PMID:20346965
A role for human endogenous retrovirus-K (HML-2) in rheumatoid arthritis: investigating mechanisms of pathogenesis.
PMID:20345981
Protogenin defines a transition stage during embryonic neurogenesis and prevents precocious neuronal differentiation.
PMID:20335479
Conservation of human microsatellites across 450 million years of evolution.
PMID:20333231
Population genomics of intron splicing in 38 Saccharomyces cerevisiae genome sequences.
PMID:20333215
Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes.
PMID:20333191
On the origin and evolution of vertebrate olfactory receptor genes: comparative genome analysis among 23 chordate species.
PMID:20333175
Independent mammalian genome contractions following the KT boundary.
PMID:20333172
Metnase/SETMAR: a domesticated primate transposase that enhances DNA repair, replication, and decatenation.
PMID:20309721
What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?
PMID:20308093
A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome.
PMID:20307669
Genome organization of major tandem repeats in the hard tick, Ixodes scapularis.
PMID:20306126
Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.
PMID:20305088
Engineering of single Ig superfamily domain of intercellular adhesion molecule 1 (ICAM-1) for native fold and function.
PMID:20304924
Laboratory methods for the analysis of primate mobile elements.
PMID:20238081
Computational methods for the analysis of primate mobile elements.
PMID:20238080
Genome-wide association studies and beyond.
PMID:20235850
Serum DNA motifs predict disease and clinical status in multiple sclerosis.
PMID:20228264
Heads or tails: L1 insertion-associated 5' homopolymeric sequences.
PMID:20226075
Mobile DNA and evolution in the 21st century.
PMID:20226073
Epigenetic histone modifications of human transposable elements: genome defense versus exaptation.
PMID:20226072
An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes.
PMID:20223737
The (r)evolution of SINE versus LINE distributions in primate genomes: sex chromosomes are important.
PMID:20219940
Involvement of transposon-like elements in penicillin gene cluster regulation.
PMID:20219692
Somatic expression of LINE-1 elements in human tissues.
PMID:20215437
Transposases are the most abundant, most ubiquitous genes in nature.
PMID:20215432
Redefining CpG islands using hidden Markov models.
PMID:20212320
RNA dust: where are the genes?
PMID:20211845
Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates.
PMID:20210993
A Study of the Distribution of Phylogenetically Conserved Blocks within Clusters of Mammalian Homeobox Genes.
PMID:20209015
Using the DFCI gene index databases for biological discovery.
PMID:20205187
A time for atlases and atlases for time.
PMID:20204142
Visualizing genomes: techniques and challenges.
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An effective model for natural selection in promoters.
PMID:20194951
Personal genome sequencing: current approaches and challenges.
PMID:20194435
Pharmacogenetics and personal genomes.
PMID:20190862
Imaging of Abdominal Aortic Aneurysm: the present and the future.
PMID:20180767
Genomic gems: SINE RNAs regulate mRNA production.
PMID:20176473
Genome-wide identification of susceptibility alleles for viral infections through a population genetics approach.
PMID:20174570
A new model system swims into focus: using the zebrafish to visualize intestinal metabolism in vivo.
PMID:20174460
Codon usage biases of transposable elements and host nuclear genes in Arabidopsis thaliana and Oryza sativa.
PMID:20172490
Inheritance of DNA transferred from American trypanosomes to human hosts.
PMID:20169193
Genome destabilization by homologous recombination in the germ line.
PMID:20164840
Methylation status of individual CpG sites within Alu elements in the human genome and Alu hypomethylation in gastric carcinomas.
PMID:20163738
Isolation and characterization of a novel zinc finger gene, ZNFD, activating AP1(PMA) transcriptional activities.
PMID:20162441
Acceleration of Ungapped Extension in Mercury BLAST.
PMID:20160873
Genetics of psychiatric disorders methods: molecular approaches.
PMID:20159337
Modeling neutral evolution of Alu elements using a branching process.
PMID:20158868
Transposon identification using profile HMMs.
PMID:20158867
Chromatin modifications: the driving force of senescence and aging?
PMID:20157508
Structure of avian thymic hormone, a high-affinity avian beta-parvalbumin, in the Ca2+-free and Ca2+-bound states.
PMID:20156445
Kinetic and structural analysis of substrate specificity in two copper amine oxidases from Hansenula polymorpha.
PMID:20155950
Beyond the HapMap Genotypic Data: Prospects of Deep Resequencing Projects.
PMID:20151045
Evolutionary biology: Face of the past reconstructed.
PMID:20148020
Discrete subcellular partitioning of human retrotransposon RNAs despite a common mechanism of genome insertion.
PMID:20147320
2x genomes--depth does matter.
PMID:20144222
Child and adolescent psychiatric genetics.
PMID:20140632
CpG methylation of a silent controlling element in the murine Avy allele is incomplete and unresponsive to methyl donor supplementation.
PMID:20140227
Mutations in Grxcr1 are the basis for inner ear dysfunction in the pirouette mouse.
PMID:20137774
Generation of expression vectors for high-throughput functional analysis of target genes in Schizosaccharomyces pombe.
PMID:20127475
U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line.
PMID:20126413
A gene-centric human proteome project: HUPO--the Human Proteome organization.
PMID:20124355
One Decade Later: What has Gene Expression Profiling Told us About Neuronal Cell Types, Brain Function and Disease?
PMID:20119529
Construction of gene/transcription regulatory networks.
PMID:20118125
How far can we go with structural mass spectrometry of protein complexes?
PMID:20116283
Overlapping splicing regulatory motifs--combinatorial effects on splicing.
PMID:20110253
Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer.
PMID:20108112
The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing.
PMID:20105308
A transposon and transposase system for human application.
PMID:20104209
Implication of the env gene of the human endogenous retrovirus W family in the expression of BDNF and DRD3 and development of recent-onset schizophrenia.
PMID:20100784
Selection and mutation in the "new" genetics: an emerging hypothesis.
PMID:20099069
Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages.
PMID:20097653
Identical repeated backbone of the human genome.
PMID:20096123
Dermatology: the last 30 years--a rollercoaster ride.
PMID:20095306
A comparative approach for the investigation of biological information processing: an examination of the structure and function of computer hard drives and DNA.
PMID:20092652
Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum.
PMID:20092619
Genetics: Decoding a national treasure.
PMID:20090741
Metabolic syndrome components in murine models.
PMID:20088816
Highly punctuated patterns of population structure on the X chromosome and implications for African evolutionary history.
PMID:20085712
Intergenic, gene terminal, and intragenic CpG islands in the human genome.
PMID:20085634
Exploring prion protein biology in flies: genetics and beyond.
PMID:20083902
Human Rad52 binds and wraps single-stranded DNA and mediates annealing via two hRad52-ssDNA complexes.
PMID:20081207
Bifurcation and enhancement of autonomous-nonautonomous retrotransposon partnership through LTR Swapping in soybean.
PMID:20081112
Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life.
PMID:20080632
The imprinted retrotransposon-like gene PEG11 (RTL1) is expressed as a full-length protein in skeletal muscle from Callipyge sheep.
PMID:20072617
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.
PMID:20067941
Biomarkers of lead exposure and DNA methylation within retrotransposons.
PMID:20064768
Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates.
PMID:20064230
Endogenous non-retroviral RNA virus elements in mammalian genomes.
PMID:20054395
Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control.
PMID:20053729
Chaperone requirements for biosynthesis of the trypanosome variant surface glycoprotein.
PMID:20052285
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.
PMID:20051556
Finding Occurrences of Relevant Functional Elements in Genomic Signatures.
PMID:20046539
Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencing.
PMID:20043857
Elucidating novel mechanisms of brain injury following subarachnoid hemorrhage: an emerging role for neuroproteomics.
PMID:20043714
High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe.
PMID:20040583
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
PMID:20037582
Development of a Pharmacogenetic Predictive Test in asthma: proof of concept.
PMID:20032818
Next-generation sequencing.
PMID:20030863
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom.
PMID:20028555
Functional diversity of human protein kinase splice variants marks significant expansion of human kinome.
PMID:20028505
From race to repositories: bioethics in a genomics age.
PMID:20027284
Copy number variations in East-Asian population and their evolutionary and functional implications.
PMID:20026555
De novo assembly of human genomes with massively parallel short read sequencing.
PMID:20019144
ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth.
PMID:20016685
Human genomics: The genome finishers.
PMID:20016572
Sequence determinants of human microsatellite variability.
PMID:20015383
Exome sequencing of a multigenerational human pedigree.
PMID:20011588
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies.
PMID:20011109
The CRF system, stress, depression and anxiety-insights from human genetic studies.
PMID:20010888
Synthetic viruses: a new opportunity to understand and prevent viral disease.
PMID:20010599
A first look at entire human methylomes.
PMID:20010593
Alcohol exposure alters DNA methylation profiles in mouse embryos at early neurulation.
PMID:20009564
Alpha3, a transposable element that promotes host sexual reproduction.
PMID:20008928
Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements.
PMID:20008508
Genome-wide scans for footprints of natural selection.
PMID:20008396
Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation.
PMID:20003307
Pharmacogenomics: a new paradigm to personalize treatments in nephrology patients.
PMID:19968662
Stretching chromatin through confinement.
PMID:19967112
Comprehensive genomic access to vector integration in clinical gene therapy.
PMID:19966782
Understanding genetic epidemiologic association studies Part 1: fundamentals.
PMID:19962167
Mechanisms of copy number variation and hybrid gene formation in the KIR immune gene complex.
PMID:19959527
GWAS or Gee Whiz, PSAS or Pshaw: elucidating the biologic and clinical significance of genetic variation in cardiovascular disease.
PMID:19959124
Proteomic identification of multitasking proteins in unexpected locations complicates drug targeting.
PMID:19949400
Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila.
PMID:19948818
Pharmacogenetics in heart failure: how it will shape the future.
PMID:19945055
High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays.
PMID:19943955
Application of OMICS technologies in occupational and environmental health research; current status and projections.
PMID:19933307
Use of cell lines in the investigation of pharmacogenetic loci.
PMID:19925429
CG dinucleotide periodicities recognized by the Dnmt3a-Dnmt3L complex are distinctive at retroelements and imprinted domains.
PMID:19921333
Expression profiling of repetitive elements by melting temperature analysis: variation in HERV-W gag expression across human individuals and tissues.
PMID:19919688
Discovery and annotation of functional chromatin signatures in the human genome.
PMID:19918365
Alu repeats increase local recombination rates.
PMID:19917129
Discovery of regulatory elements is improved by a discriminatory approach.
PMID:19911049
The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution.
PMID:19911040
Correlation of microsynteny conservation and disease gene distribution in mammalian genomes.
PMID:19909546
Genome-wide association studies in cancer--current and future directions.
PMID:19906782
Talua SINE biology in the genome of the Reticulitermes subterranean termites (Isoptera, Rhinotermitidae).
PMID:19904483
A role for the MS analysis of nucleic acids in the post-genomics age.
PMID:19897384
Genome sequence, comparative analysis, and population genetics of the domestic horse.
PMID:19892987
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species.
PMID:19892720
Identification and functional analyses of 11,769 full-length human cDNAs focused on alternative splicing.
PMID:19880432
Environmental stresses inhibit splicing in the aquatic fungus Blastocladiella emersonii.
PMID:19874600
A novel mouse HSF3 has the potential to activate nonclassical heat-shock genes during heat shock.
PMID:19864465
LINE dancing in the human genome: transposable elements and disease.
PMID:19863772
Conceptualizing child health disparities: a role for developmental neurogenomics.
PMID:19861470
An exon-based comparative variant analysis pipeline to study the scale and role of frameshift and nonsense mutation in the human-chimpanzee divergence.
PMID:19859573
Can an infectious disease genomics project predict and prevent the next pandemic?
PMID:19855828
Finding distal regulatory elements in the human genome.
PMID:19854636
APOBEC3 proteins inhibit LINE-1 retrotransposition in the absence of ORF1p binding.
PMID:19845642
Friendly viruses: the special relationship between endogenous retroviruses and their host.
PMID:19845636
Next-generation gap.
PMID:19844227
Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.
PMID:19840385
Chronic health conditions in childhood cancer survivors: is it all treatment-related--or do genetics play a role?
PMID:19838838
Reading between the LINEs to see into the past.
PMID:19837475
Regulated expression of a transgene introduced on an oriP/EBNA-1 PAC shuttle vector into human cells.
PMID:19835613
Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity.
PMID:19835609
Requirements for recruitment of a G protein-coupled receptor to clathrin-coated pits in budding yeast.
PMID:19828733
Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome.
PMID:19826774
Oncogene mutations, copy number gains and mutant allele specific imbalance (MASI) frequently occur together in tumor cells.
PMID:19826477
Transposable elements in disease-associated cryptic exons.
PMID:19823873
The NIH Human Microbiome Project.
PMID:19819907
Emergence of single-molecule sequencing and potential for molecular diagnostic applications.
PMID:19817551
Social and ethical checkpoints for bottom-up synthetic biology, or protocells.
PMID:19816801
Insights into the nature and consequences of our variable genome.
PMID:19808931
Predictive chromatin signatures in the mammalian genome.
PMID:19808796
Beyond society: the evolution of organismality.
PMID:19805423
Triplet repeat length bias and variation in the human transcriptome.
PMID:19805156
High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.
PMID:19804644
The origins and impact of primate segmental duplications.
PMID:19796838
Recent advances of genetic ancestry testing in biomedical research and direct to consumer testing.
PMID:19793051
Identification of copy number variants defining genomic differences among major human groups.
PMID:19789632
Regulation of the epithelial sodium channel [ENaC] in kidneys of salt-sensitive Dahl rats: insights on alternative splicing.
PMID:19785774
Common variants in polygenic schizophrenia.
PMID:19785721
tRNA over-expression in breast cancer and functional consequences.
PMID:19783824
Long-term consequences of hematopoietic stem cell transplantation: current state of the science.
PMID:19782145
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans.
PMID:19778439
Assessment of Population Structure and Its Effects on Genome-Wide Association Studies.
PMID:19777146
An Alu-derived intronic splicing enhancer facilitates intronic processing and modulates aberrant splicing in ATM.
PMID:19773425
Rheumatoid arthritis genetics: 2009 update.
PMID:19772830
Many LINE1 elements contribute to the transcriptome of human somatic cells.
PMID:19772661
Environmental influence on L1 retrotransposons in the adult hippocampus.
PMID:19771587
High-throughput SNP genotyping: combining tag SNPs and molecular beacons.
PMID:19768600
The completion of the Mammalian Gene Collection (MGC).
PMID:19767417
Light-mediated remote control of signaling pathways.
PMID:19765679
A c-Myc regulatory subnetwork from human transposable element sequences.
PMID:19763338
Human miRNA precursors with box H/ACA snoRNA features.
PMID:19763159
The impact of retrotransposons on human genome evolution.
PMID:19763152
MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes.
PMID:19762481
Prediction of antibody response using recombinant human protein fragments as antigen.
PMID:19760667
Insights into electron tunneling across hydrogen-bonded base-pairs in complete molecular circuits for single-stranded DNA sequencing.
PMID:19759919
An evolutionary perspective of animal microRNAs and their targets.
PMID:19759918
Two-parameter characterization of chromosome-scale recombination rate.
PMID:19752285
Genome-wide association studies for atherosclerotic vascular disease and its risk factors.
PMID:19750184
Splice site strength-dependent activity and genetic buffering by poly-G runs.
PMID:19749754
Prepublication data sharing.
PMID:19741685
Human endogenous retroviral long terminal repeat sequences as cell type-specific promoters in retroviral vectors.
PMID:19741000
Evidence for large diversity in the human transcriptome created by Alu RNA editing.
PMID:19740767
Genetics and the general physician: insights, applications and future challenges.
PMID:19737788
Update on genomics in veterinary oncology.
PMID:19732729
Spatial organization of genes as a component of regulated expression.
PMID:19727792
Non-B DNA structure-induced genetic instability and evolution.
PMID:19727556
The B6 database: a tool for the description and classification of vitamin B6-dependent enzymatic activities and of the corresponding protein families.
PMID:19723314
Systematic identification and characterization of chicken (Gallus gallus) ncRNAs.
PMID:19720738
p53 responsive elements in human retrotransposons.
PMID:19718052
Computational reasoning across multiple models.
PMID:19717801
Global microsatellite content distinguishes humans, primates, animals, and plants.
PMID:19717526
Genotype imputation.
PMID:19715440
CDT retroelement: The stratagem to survive extreme vegetative dehydration.
PMID:19704456
Detection of genomic variation by selection of a 9 mb DNA region and high throughput sequencing.
PMID:19684856
Computational analyses of mammalian lactate dehydrogenases: human, mouse, opossum and platypus LDHs.
PMID:19679512
Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin.
PMID:19678920
Metalloproteins and metal sensing.
PMID:19675642
Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize.
PMID:19675151
The role of LINEs and CpG islands in dosage compensation on the chicken Z chromosome.
PMID:19672682
Insights from genomic profiling of transcription factors.
PMID:19668247
Single-molecule sequencing of an individual human genome.
PMID:19668243
Cooperative-binding and splicing-repressive properties of hnRNP A1.
PMID:19667073
Cross-sectional dating of novel haplotypes of HERV-K 113 and HERV-K 115 indicate these proviruses originated in Africa before Homo sapiens.
PMID:19666991
Trypanosomatid genomes contain several subfamilies of ingi-related retroposons.
PMID:19666780
Transposable elements and factors influencing their success in eukaryotes.
PMID:19666747
Group I introns and inteins: disparate origins but convergent parasitic strategies.
PMID:19666710
Doubts about complex speciation between humans and chimpanzees.
PMID:19664844
The molecular characterization and clinical management of multiple myeloma in the post-genome era.
PMID:19657360
Statistical aspects of discerning indel-type structural variation via DNA sequence alignment.
PMID:19656394
Establishing a population-based cancer registry DNA biorepository: the Hawai'i Tumor Registry's Sharing Ohana project.
PMID:19653421
5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome.
PMID:19652014
Establishment of Hox vertebral identities in the embryonic spine precursors.
PMID:19651306
Retroelements and their impact on genome evolution and functioning.
PMID:19649766
Evolutionary history reconstruction for Mammalian complex gene clusters.
PMID:19645598
Genomic mutation rates: what high-throughput methods can tell us.
PMID:19644920
Bipartite functions of the CREB co-activators selectively direct alternative splicing or transcriptional activation.
PMID:19644446
Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice.
PMID:19641029
Genetic and pharmacologic alteration of cathepsin expression influences reovirus pathogenesis.
PMID:19640986
Exon-trapping mediated by the human retrotransposon SVA.
PMID:19635844
Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation.
PMID:19630943
Sequencing primate genomes: what have we learned?
PMID:19630567
Alternative splicing of G protein-coupled receptors: physiology and pathophysiology.
PMID:19629391
Coevolution of interacting fertilization proteins.
PMID:19629160
Publish together or perish: the increasing number of authors per article in academic journals is the consequence of a changing scientific culture. Some researchers define authorship quite loosely.
PMID:19626176
Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome.
PMID:19625614
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes.
PMID:19624823
InvAluable junk: the cellular impact and function of Alu and B2 RNAs.
PMID:19621349
Alternative splicing of transcription factors' genes: beyond the increase of proteome diversity.
PMID:19609452
LEDGF/p75 proteins with alternative chromatin tethers are functional HIV-1 cofactors.
PMID:19609362
Exaptation of an ancient Alu short interspersed element provides a highly conserved vitamin D-mediated innate immune response in humans and primates.
PMID:19607716
A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups.
PMID:19607703
A compartmentalized approach to the assembly of physical maps.
PMID:19604400
The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine.
PMID:19602640
Every genome sequence needs a good map.
PMID:19596977
Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing.
PMID:19594881
Modeling the repertoire of true tumor-specific MHC I epitopes in a human tumor.
PMID:19593447
Transposons that clean up after themselves.
PMID:19589181
A highly annotated whole-genome sequence of a Korean individual.
PMID:19587683
Evolutionary flexibility of protein complexes.
PMID:19583842
OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif.
PMID:19583839
DNA migration mechanism analyses for applications in capillary and microchip electrophoresis.
PMID:19582705
Transcriptional and post-transcriptional profile of human chromosome 21.
PMID:19581486
Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation.
PMID:19578405
Genome-wide association studies and the genetic dissection of complex traits.
PMID:19569043
Genome desertification in eutherians: can gene deserts explain the uneven distribution of genes in placental mammalian genomes?
PMID:19568804
Translational bioinformatics applications in genome medicine.
PMID:19566916
Genomics of type 2 diabetes mellitus: implications for the clinician.
PMID:19564886
More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body.
PMID:19562079
Comparative methylation of ERVWE1/syncytin-1 and other human endogenous retrovirus LTRs in placenta tissues.
PMID:19561344
Allelic polymorphism within the TAS1R3 promoter is associated with human taste sensitivity to sucrose.
PMID:19559618
Rational design of ligands targeting triplet repeating transcripts that cause RNA dominant disease: application to myotonic muscular dystrophy type 1 and spinocerebellar ataxia type 3.
PMID:19552411
Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.
PMID:19550198
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding.
PMID:19546169
Stochastic noise in splicing machinery.
PMID:19546110
High G+C Content of Herpes Simplex Virus DNA: Proposed Role in Protection Against Retrotransposon Insertion.
PMID:19543363
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.
PMID:19542148
Challenges, current status and future perspectives of proteomics in improving understanding, diagnosis and treatment of vascular disease.
PMID:19541510
Dynamics of transposable elements: towards a community ecology of the genome.
PMID:19540613
7TMRmine: a Web server for hierarchical mining of 7TMR proteins.
PMID:19538753
Patterns of oligonucleotide sequences in viral and host cell RNA identify mediators of the host innate immune system.
PMID:19536338
Identification, characterization and expression of novel Sex Hormone Binding Globulin alternative first exons in the human prostate.
PMID:19534810
Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX.
PMID:19534743
Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation.
PMID:19531736
Differential radio-sensitivities of human chromosomes 1 and 2 in one donor in interphase- and metaphase-spreads after 60Co gamma-irradiation.
PMID:19531236
Apprehending multicellularity: regulatory networks, genomics, and evolution.
PMID:19530132
Using RNA interference to identify specific modifiers of a temperature-sensitive, embryonic-lethal mutation in the Caenorhabditis elegans ubiquitin-like Nedd8 protein modification pathway E1-activating gene rfl-1.
PMID:19528325
Structural implication of splicing stochastics.
PMID:19528068
The European renal genome project: an integrated approach towards understanding the genetics of kidney development and disease.
PMID:19521566
The 1001 genomes project for Arabidopsis thaliana.
PMID:19519932
Chromodomains and LTR retrotransposons in plants.
PMID:19513271
Tracking the past: interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius.
PMID:19508981
The repertoire of G-protein-coupled receptors in Xenopus tropicalis.
PMID:19508718
Stepwise evolution of two giant composite LTR-retrotransposon-like elements DA and Xiao.
PMID:19500371
Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements.
PMID:19497354
A novel protein isoform of the multicopy human NAIP gene derives from intragenic Alu SINE promoters.
PMID:19488400
L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism.
PMID:19487571
Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships.
PMID:19483094
Transposon-mediated genome manipulation in vertebrates.
PMID:19478801
A comparative approach shows differences in patterns of numt insertion during hominoid evolution.
PMID:19471988
The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group.
PMID:19470904
A transcript profiling approach reveals the zinc finger transcription factor ZNF191 is a pleiotropic factor.
PMID:19463170
Next-generation sequencing of vertebrate experimental organisms.
PMID:19452216
SEPT9 gene sequencing analysis reveals recurrent mutations in hereditary neuralgic amyotrophy.
PMID:19451530
Gene organization and sequence analyses of transfer RNA genes in Trypanosomatid parasites.
PMID:19450263
A novel L1 retrotransposon marker for HeLa cell line identification.
PMID:19450234
A HUPO test sample study reveals common problems in mass spectrometry-based proteomics.
PMID:19448641
A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide.
PMID:19447786
Source gene composition and gene conversion of the AluYh and AluYi lineages of retrotransposons.
PMID:19442302
Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay.
PMID:19442261
Mobile elements create structural variation: analysis of a complete human genome.
PMID:19439515
Genomic disorders ten years on.
PMID:19439022
Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer.
PMID:19437537
TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences.
PMID:19429695
Repair-mediated duplication by capture of proximal chromosomal DNA has shaped vertebrate genome evolution.
PMID:19424419
Widespread genomic signatures of natural selection in hominid evolution.
PMID:19424416
Minireview: Evolution of NURSA, the Nuclear Receptor Signaling Atlas.
PMID:19423650
Predicting potential miRNA target sites within gene promoters.
PMID:19423343
LINE-1 methylation in plasma DNA as a biomarker of activity of DNA methylation inhibitors in patients with solid tumors.
PMID:19421002
SNP detection for massively parallel whole-genome resequencing.
PMID:19420381
Remarkable evolutionary conservation of SOX14 orthologues.
PMID:19417540
Phylogenetic analysis, structural evolution and functional divergence of the 12-oxo-phytodienoate acid reductase gene family in plants.
PMID:19416520
The GNAS Locus: Quintessential Complex Gene Encoding Gsalpha, XLalphas, and other Imprinted Transcripts.
PMID:19412439
Characteristics of human and mouse orthologous protein-coding nucleotide sequences with large g+c content variations.
PMID:19412417
Comparative analysis of Alu repeats in primate genomes.
PMID:19411604
Evolutionary descent of a human chromosome 6 neocentromere: a jump back to 17 million years ago.
PMID:19411601
Constructing genomic maps of positive selection in humans: where do we go from here?
PMID:19411596
Automated FingerPrint Background removal: FPB.
PMID:19405935
Comparative component analysis of exons with different splicing frequencies.
PMID:19404386
Personalized medicine: a transformative approach is needed.
PMID:19398733
Tumor-directed gene therapy in mice using a composite nonviral gene delivery system consisting of the piggyBac transposon and polyethylenimine.
PMID:19397814
Repetitive DNA elements, nucleosome binding and human gene expression.
PMID:19393174
Analysis of the complement and molecular evolution of tRNA genes in cow.
PMID:19393063
Bos taurus genome assembly.
PMID:19393050
The RNA polymerase dictates ORF1 requirement and timing of LINE and SINE retrotransposition.
PMID:19390602
Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries.
PMID:19390579
Marker selection for genetic case-control association studies.
PMID:19390530
LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia.
PMID:19383153
Old can be new again: HAPPY whole genome sequencing, mapping and assembly.
PMID:19381348
Estimating the age of retrotransposon subfamilies using maximum likelihood.
PMID:19379804
Promoter analysis: gene regulatory motif identification with A-GLAM.
PMID:19378149
Genomewide association studies and human disease.
PMID:19369657
Structural determinants of protein folding.
PMID:19367367
Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology.
PMID:19364723
Advances in systems biology are enhancing our understanding of disease and moving us closer to novel disease treatments.
PMID:19363597
An indel in transmembrane helix 2 helps to trace the molecular evolution of class A G-protein-coupled receptors.
PMID:19357801
Race and ancestry in biomedical research: exploring the challenges.
PMID:19348695
Balanced translocations in mental retardation.
PMID:19347365
DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.
PMID:19344873
A theoretical model for template-free synthesis of long DNA sequence.
PMID:19343541
Perdeuteration, purification, crystallization and preliminary neutron diffraction of an ocean pout type III antifreeze protein.
PMID:19342793
Applications of metabolomics and proteomics to the mdx mouse model of Duchenne muscular dystrophy: lessons from downstream of the transcriptome.
PMID:19341503
The cycle of genome-directed medicine.
PMID:19341487
Fascin-1 promoter activity is regulated by CREB and the aryl hydrocarbon receptor in human carcinoma cells.
PMID:19340314
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.
PMID:19339662
Genomewide association studies: history, rationale, and prospects for psychiatric disorders.
PMID:19339359
Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions.
PMID:19339349
Drosophila melanogaster as a model organism of brain diseases.
PMID:19333415
Comparative genomic study reveals a transition from TA richness in invertebrates to GC richness in vertebrates at CpG flanking sites: an indication for context-dependent mutagenicity of methylated CpG sites.
PMID:19329065
Identification of conserved regulatory elements in mammalian promoter regions: a case study using the PCK1 promoter.
PMID:19329064
A robust linkage map of the porcine autosomes based on gene-associated SNPs.
PMID:19327136
Heterochromatic genome stability requires regulators of histone H3 K9 methylation.
PMID:19325889
The ubiquitylation machinery of the endoplasmic reticulum.
PMID:19325625
Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes.
PMID:19324900
Harnessing nature's toolbox: regulatory elements for synthetic biology.
PMID:19324675
Planning the human variome project: the Spain report.
PMID:19306394
CpG islands: algorithms and applications in methylation studies.
PMID:19302978
The apolipoprotein L family of programmed cell death and immunity genes rapidly evolved in primates at discrete sites of host-pathogen interactions.
PMID:19299565
HLA-A allele associations with viral MER9-LTR nucleotide sequences at two distinct loci within the MHC alpha block.
PMID:19294374
Genome-wide hypomethylation in head and neck cancer is more pronounced in HPV-negative tumors and is associated with genomic instability.
PMID:19293934
Human genetic variation and its contribution to complex traits.
PMID:19293820
Human genes involved in copy number variation: mechanisms of origin, functional effects and implications for disease.
PMID:19287135
Cancer gene discovery in mouse and man.
PMID:19285540
Missing call bias in high-throughput genotyping.
PMID:19284636
TFCat: the curated catalog of mouse and human transcription factors.
PMID:19284633
Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks.
PMID:19284572
Using biological networks to search for interacting loci in genome-wide association studies.
PMID:19277065
A census of human transcription factors: function, expression and evolution.
PMID:19274049
Finding the fifth base: genome-wide sequencing of cytosine methylation.
PMID:19273618
Diverse cis factors controlling Alu retrotransposition: what causes Alu elements to die?
PMID:19273617
Integration target site selection by a resurrected human endogenous retrovirus.
PMID:19270161
Gene targeting in mouse embryonic stem cells.
PMID:19266325
A functional and regulatory network associated with PIP expression in human breast cancer.
PMID:19262752
Odor coding by a Mammalian receptor repertoire.
PMID:19261596
A tale of tails: insights into the coordination of 3' end processing during homologous recombination.
PMID:19260026
Duplication count distributions in DNA sequences.
PMID:19256873
ChIP-based methods for the identification of long-range chromatin interactions.
PMID:19247990
Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes.
PMID:19246569
Methods to determine DNA structural alterations and genetic instability.
PMID:19245837
Genomics and identity: the bioinformatisation of human life.
PMID:19242821
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.
PMID:19240123
A framework for evolutionary systems biology.
PMID:19239699
Molecular evolution of the antiretroviral TRIM5 gene.
PMID:19238338
Beyond chemotherapy: targeted therapies in ovarian cancer.
PMID:19238149
Guinea pig ID-like families of SINEs.
PMID:19232383
Protein evolution on a human signaling network.
PMID:19226461
Identifying protein-coding genes in genomic sequences.
PMID:19226436
Bead-probe complex capture a couple of SINE and LINE family from genomes of two closely related species of East Asian cyprinid directly using magnetic separation.
PMID:19224649
Genomic profiling of mesenchymal stem cells.
PMID:19224407
Predicting human height by Victorian and genomic methods.
PMID:19223933
The position of repetitive DNA sequence in the southern cattle tick genome permits chromosome identification.
PMID:19221885
Ectodermal dysplasia-cutaneous syndactyly syndrome maps to chromosome 7p21.1-p14.3.
PMID:19221800
Microsatellites are molecular clocks that support accurate inferences about history.
PMID:19221007
Evolutionary history of Na,K-ATPases and their osmoregulatory role.
PMID:19214758
Experimental animal model and RNA interference: a promising association for bladder cancer research.
PMID:19214530
ChIP-seq accurately predicts tissue-specific activity of enhancers.
PMID:19212405
Structural determinants involved in the formation and activation of G protein betagamma dimers.
PMID:19212142
Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome.
PMID:19208170
Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis.
PMID:19196664
Revisiting the missing protein-coding gene catalog of the domestic dog.
PMID:19193219
Cryptic variation in the human mutation rate.
PMID:19192947
Dense chromatin plates in metaphase chromosomes.
PMID:19189102
AID can restrict L1 retrotransposition suggesting a dual role in innate and adaptive immunity.
PMID:19188259
Site-specific integration of retroviral DNA in human cells using fusion proteins consisting of human immunodeficiency virus type 1 integrase and the designed polydactyl zinc-finger protein E2C.
PMID:19186211
Quantitative variation of LINE-1 sequences in five species and three subspecies of the subgenus Mus and in five Robertsonian races of Mus musculus domesticus.
PMID:19184476
The effect of transposable element insertions on gene expression evolution in rodents.
PMID:19183808
Integrating sequence with FPC fingerprint maps.
PMID:19181701
Reduced neutrophil count in people of African descent is due to a regulatory variant in the Duffy antigen receptor for chemokines gene.
PMID:19180233
LINE retrotransposon RNA is an essential structural and functional epigenetic component of a core neocentromeric chromatin.
PMID:19180186
A new link between epigenetic progenitor lesions in cancer and the dynamics of signal transduction.
PMID:19177016
Bioinformatic flowchart and database to investigate the origins and diversity of clan AA peptidases.
PMID:19173708
Orientation, distance, regulation and function of neighbouring genes.
PMID:19164091
What are microarrays teaching us about sleep?
PMID:19162550
Characterization of taxonomically restricted genes in a phylum-restricted cell type.
PMID:19161630
Minisatellite MS32 alleles show population specificity among Thai, Chinese, and Japanese.
PMID:19159965
Decline in genomic DNA methylation through aging in a cohort of elderly subjects.
PMID:19150625
De novo induction of genetically engineered brain tumors in mice using plasmid DNA.
PMID:19147555
Genomic and proteomic analysis of allogeneic hematopoietic cell transplant outcome. Seeking greater understanding the pathogenesis of GVHD and mortality.
PMID:19147066
Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame.
PMID:19139409
Duplication within the SEPT9 gene associated with a founder effect in North American families with hereditary neuralgic amyotrophy.
PMID:19139049
Human ribonuclease 9, a member of ribonuclease A superfamily, specifically expressed in epididymis, is a novel sperm-binding protein.
PMID:19137000
Passport, a native Tc1 transposon from flatfish, is functionally active in vertebrate cells.
PMID:19136468
Structural alphabets for protein structure classification: a comparison study.
PMID:19135454
Evolutionary sequence modeling for discovery of peptide hormones.
PMID:19132080
Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes.
PMID:19123937
Adaptive evolution in zinc finger transcription factors.
PMID:19119423
Mobilization of endogenous retroviruses in mice after infection with an exogenous retrovirus.
PMID:19116259
Genomic organization of repetitive DNAs in the cichlid fish Astronotus ocellatus.
PMID:19112556
Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons.
PMID:19112500
The GC-heterogeneity of teleost fishes.
PMID:19108743
Isolation and characterization of post-splicing lariat-intron complexes.
PMID:19103666
A proviral puzzle with a prosimian twist.
PMID:19091949
Evolutionary-new centromeres preferentially emerge within gene deserts.
PMID:19087244
A global network for investigating the genomic epidemiology of malaria.
PMID:19079050
Brain tumor susceptibility: the role of genetic factors and uses of mouse models to unravel risk.
PMID:19076777
The YH database: the first Asian diploid genome database.
PMID:19073702
Genome-wide association studies in the genetics of asthma.
PMID:19063818
Introduction to the special issue: psychological aspects of genomics and child health.
PMID:19060299
The human genome in the LINE of fire.
PMID:19057007
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics.
PMID:19055845
Gene flow and genetic structure in the Galician population (NW Spain) according to Alu insertions.
PMID:19055739
DNA sequencing by microchip electrophoresis using mixtures of high- and low-molar mass poly(N,N-dimethylacrylamide) matrices.
PMID:19053157
Polymer systems designed specifically for DNA sequencing by microchip electrophoresis: a comparison with commercially available materials.
PMID:19053156
Thermoresponsive N-alkoxyalkylacrylamide polymers as a sieving matrix for high-resolution DNA separations on a microfluidic chip.
PMID:19053065
Identification of common genetic variants that account for transcript isoform variation between human populations.
PMID:19052777
Comparative genomics and molecular dynamics of DNA repeats in eukaryotes.
PMID:19052325
A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque.
PMID:19048265
Chromosome 12p deletions in TEL-AML1 childhood acute lymphoblastic leukemia are associated with retrotransposon elements and occur postnatally.
PMID:19047175
An ancient duplication of exon 5 in the Snap25 gene is required for complex neuronal development/function.
PMID:19043548
A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes.
PMID:19043541
Methods for integration site distribution analyses in animal cell genomes.
PMID:19038346
Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome features.
PMID:19038045
L1 recombination-associated deletions generate human genomic variation.
PMID:19036926
SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry.
PMID:19036792
The HuRef Browser: a web resource for individual human genomics.
PMID:19036787
Estimating translational selection in eukaryotic genomes.
PMID:19033257
Genetic signature for human risk assessment: lessons from trichloroethylene.
PMID:19031419
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.
PMID:19029536
Mapping key features of transcriptional regulatory circuitry in embryonic stem cells.
PMID:19022761
Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays.
PMID:19021909
Genome and proteome annotation: organization, interpretation and integration.
PMID:19019817
Does selection against transcriptional interference shape retroelement-free regions in mammalian genomes?
PMID:19018283
Exon definition as a potential negative force against intron losses in evolution.
PMID:19014515
Identification of the HERV-K gag antigen in prostate cancer by SEREX using autologous patient serum and its immunogenicity.
PMID:19006261
A single amino acid substitution in a segment of the CA protein within Gag that has similarity to human immunodeficiency virus type 1 blocks infectivity of a human endogenous retrovirus K provirus in the human genome.
PMID:19004950
Chemical genomics: massively parallel technologies for rapid lead identification and target validation.
PMID:19003080
Toward genomic cell culture engineering.
PMID:19003075
Alternative splicing and disease.
PMID:18992329
Two-dimensional combinatorial screening identifies specific 6'-acylated kanamycin A- and 6'-acylated neamine-RNA hairpin interactions.
PMID:18991404
The diploid genome sequence of an Asian individual.
PMID:18987735
Epigenetic mechanisms in mammals.
PMID:18985277
Alternative isoform regulation in human tissue transcriptomes.
PMID:18978772
Width of gene expression profile drives alternative splicing.
PMID:18974852
Expression patterns of protein kinases correlate with gene architecture and evolutionary rates.
PMID:18974838
DNA hypomethylation arises later in prostate cancer progression than CpG island hypermethylation and contributes to metastatic tumor heterogeneity.
PMID:18974140
Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples.
PMID:18973670
LINE-like retrotransposition in Saccharomyces cerevisiae.
PMID:18957700
Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome.
PMID:18957082
Nutritional genomics, polyphenols, diets, and their impact on dietetics.
PMID:18954579
Complex organisation and structure of the ghrelin antisense strand gene GHRLOS, a candidate non-coding RNA gene.
PMID:18954468
Bacteriophage Mu integration in yeast and mammalian genomes.
PMID:18953026
Determining the impact of alternative splicing events on transcriptome dynamics.
PMID:18950505
Proteomics: applications in transfusion medicine.
PMID:18946951
Topology of class A G protein-coupled receptors: insights gained from crystal structures of rhodopsins, adrenergic and adenosine receptors.
PMID:18945819
Autoreactive B cells discriminate CpG-rich and CpG-poor DNA and this response is modulated by IFN-alpha.
PMID:18941176
Prevalence in the United States of selected candidate gene variants: Third National Health and Nutrition Examination Survey, 1991-1994.
PMID:18936436
Long-range chromosomal interactions and gene regulation.
PMID:18931780
A 4,103 marker integrated physical and comparative map of the horse genome.
PMID:18931483
Applications of emerging molecular technologies in glioblastoma multiforme.
PMID:18928343
DDBJ dealing with mass data produced by the second generation sequencer.
PMID:18927114
Parallel analysis of tetramerization domain mutants of the human p53 protein using PCR colonies.
PMID:18923936
Mechanism of Alu integration into the human genome.
PMID:18923924
Genomic medicine: a new frontier of medicine in the twenty first century.
PMID:18923923
Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences.
PMID:18852105
Harnessing Nutrigenomics: Development of web-based communication, databases, resources, and tools.
PMID:18850216
What would you do if you could sequence everything?
PMID:18846086
Solution conformation and thermodynamic characteristics of RNA binding by the splicing factor U2AF65.
PMID:18842594
Retrocopy contributions to the evolution of the human genome.
PMID:18842134
Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis.
PMID:18842133
Refinement of macaque synteny arrangement with respect to the official rheMac2 macaque sequence assembly.
PMID:18841486
Diverse splicing patterns of exonized Alu elements in human tissues.
PMID:18841251
STIF: Identification of stress-upregulated transcription factor binding sites in Arabidopsis thaliana.
PMID:18841238
Genome-wide studies highlight indirect links between human replication origins and gene regulation.
PMID:18838675
Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood.
PMID:18838674
GenBlastA: enabling BLAST to identify homologous gene sequences.
PMID:18838612
Retroelements (LINEs and SINEs) in vole genomes: differential distribution in the constitutive heterochromatin.
PMID:18836842
Trichoderma G protein-coupled receptors: functional characterisation of a cAMP receptor-like protein from Trichoderma atroviride.
PMID:18836726
Active Alu retrotransposons in the human genome.
PMID:18836035
Impact of non-homologous end-joining deficiency on random and targeted DNA integration: implications for gene targeting.
PMID:18835848
Splice-mediated Variants of Proteins (SpliVaP) - data and characterization of changes in signatures among protein isoforms due to alternative splicing.
PMID:18831736
Evolution of the aging brain transcriptome and synaptic regulation.
PMID:18830410
Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools.
PMID:18828907
Sole copy of Z2-type human cytidine deaminase APOBEC3H has inhibitory activity against retrotransposons and HIV-1.
PMID:18827027
GDF3 is a BMP inhibitor that can activate Nodal signaling only at very high doses.
PMID:18823971
Androgen synthesis in adrenarche.
PMID:18821018
Murine endogenous retroviruses.
PMID:18818872
Ultraconserved coding regions outside the homeobox of mammalian Hox genes.
PMID:18816392
Comparative analysis of distinct non-coding characteristics potentially contributing to the divergence of human tissue-specific genes.
PMID:18815892
Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock.
PMID:18815372
The updated concept of genome and its implications in biotechnological research and molecular diagnostics.
PMID:18802794
Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus.
PMID:18802778
Deletion of the pluripotency-associated Tex19.1 gene causes activation of endogenous retroviruses and defective spermatogenesis in mice.
PMID:18802469
Ome sweet ome: what can the genome tell us about the connectome?
PMID:18801435
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge.
PMID:18801191
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2.
PMID:18794351
Exhaustive prediction of disease susceptibility to coding base changes in the human genome.
PMID:18793467
The SET and transposase domain protein Metnase enhances chromosome decatenation: regulation by automethylation.
PMID:18790802
Short tandem repeats in human exons: a target for disease mutations.
PMID:18789129
Clinical review: the genetics of type 2 diabetes: a realistic appraisal in 2008.
PMID:18782870
ReRep: computational detection of repetitive sequences in genome survey sequences (GSS).
PMID:18782453
Metabolic innovations towards the human lineage.
PMID:18782449
The short-sequence designs of isochores from the human genome.
PMID:18780784
Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat.
PMID:18780739
Antiretroelement activity of APOBEC3H was lost twice in recent human evolution.
PMID:18779051
Genomic variation in myeloma: design, content, and initial application of the Bank On A Cure SNP Panel to detect associations with progression-free survival.
PMID:18778477
LINE-1 methylation patterns of different loci in normal and cancerous cells.
PMID:18776216
The human set and transposase domain protein Metnase interacts with DNA Ligase IV and enhances the efficiency and accuracy of non-homologous end-joining.
PMID:18773976
Isolated populations and complex disease gene identification.
PMID:18771588
Analysis of transposon interruptions suggests selection for L1 elements on the X chromosome.
PMID:18769724
Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes.
PMID:18757892
Advances in chemical carcinogenesis: a historical review and prospective.
PMID:18757397
Identification and correction of abnormal, incomplete and mispredicted proteins in public databases.
PMID:18752676
Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair.
PMID:18721477
A novel computational and structural analysis of nsSNPs in CFTR gene.
PMID:18716917
Current developments in the genetics of autism: from phenome to genome.
PMID:18716561
A resource for transcriptomic analysis in the mouse brain.
PMID:18714383
VisualRepbase: an interface for the study of occurrences of transposable element families.
PMID:18710569
MarkerSet: a marker selection tool based on markers location and informativity in experimental designs.
PMID:18710478
Genetic variation in an individual human exome.
PMID:18704161
Distribution of the transposable elements bilbo and gypsy in original and colonizing populations of Drosophila subobscura.
PMID:18702820
Restriction by APOBEC3 proteins of endogenous retroviruses with an extracellular life cycle: ex vivo effects and in vivo "traces" on the murine IAPE and human HERV-K elements.
PMID:18702815
Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosis.
PMID:18694567
Orientation-dependent regulation of integrated HIV-1 expression by host gene transcriptional readthrough.
PMID:18692773
Determining significance of pairwise co-occurrences of events in bursty sequences.
PMID:18691400
A novel missense mutation in the EDA gene associated with X-linked recessive isolated hypodontia.
PMID:18688569
A general definition and nomenclature for alternative splicing events.
PMID:18688268
Reduced purifying selection prevails over positive selection in human copy number variant evolution.
PMID:18687881
Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties.
PMID:18687880
Impacts of protein-protein interaction domains on organism and network complexity.
PMID:18687879
A novel mode of enhancer evolution: the Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity.
PMID:18687876
Integration site preference of xenotropic murine leukemia virus-related virus, a new human retrovirus associated with prostate cancer.
PMID:18684813
Evolution of the mammalian transcription factor binding repertoire via transposable elements.
PMID:18682548
The take and give between retrotransposable elements and their hosts.
PMID:18680436
Identification and characterization of novel human tissue-specific RFX transcription factors.
PMID:18673564
The agouti mouse model: an epigenetic biosensor for nutritional and environmental alterations on the fetal epigenome.
PMID:18673496
Patterns of positive selection in six Mammalian genomes.
PMID:18670650
Rise of the machines.
PMID:18670625
Maps of cis-Regulatory Nodes in Megabase Long Genome Segments are an Inevitable Intermediate Step Toward Whole Genome Functional Mapping.
PMID:18660850
Recent computational approaches to understand gene regulation: mining gene regulation in silico.
PMID:18660846
Fine mapping of the GLC1K juvenile primary open-angle glaucoma locus and exclusion of candidate genes.
PMID:18648523
Induction of chromosomal translocations in mouse and human cells using site-specific endonucleases.
PMID:18647997
Integrated one- and two-photon imaging platform reveals clonal expansion as a major driver of mutation load.
PMID:18647827
Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells.
PMID:18647386
SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.
PMID:18638396
Human endogenous retrovirus K (HML-2) elements in the plasma of people with lymphoma and breast cancer.
PMID:18632860
Human endogenous retrovirus K triggers an antigen-specific immune response in breast cancer patients.
PMID:18632641
Sequences, annotation and single nucleotide polymorphism of the major histocompatibility complex in the domestic cat.
PMID:18629345
SSRD: simple sequence repeats database of the human genome.
PMID:18629286
ORF organization and gene recognition in the yeast genome.
PMID:18629282
Endogenous retroviruses and human evolution.
PMID:18629260
Identification and comparative analysis of the peptidyl-prolyl cis/trans isomerase repertoires of H. sapiens, D. melanogaster, C. elegans, S. cerevisiae and Sz. pombe.
PMID:18629211
A 4 Mb high resolution BAC contig on bovine chromosome 1q12 and comparative analysis with human chromosome 21q22.
PMID:18629192
A computational strategy for protein function assignment which addresses the multidomain problem.
PMID:18629055
11th Intelligent Systems for Molecular Biology 2003 (ISMB 2003).
PMID:18629025
The characteristics of human genes: analysis of human chromosome 22.
PMID:18629020
Definition of the gene content of the human genome: the need for deep experimental verification.
PMID:18628909
Upstream - news in genomics.
PMID:18628853
Circulating tumor cells in breast cancer: methodology and clinical repercussions.
PMID:18628068
A race through the maze of genomic evidence.
PMID:18613945
Sequence information encoded in DNA that may influence long-range chromatin structure correlates with human chromosome functions.
PMID:18612465
The biological effects of simple tandem repeats: lessons from the repeat expansion diseases.
PMID:18593815
Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides.
PMID:18591653
Clinical, agricultural, and evolutionary biology of myostatin: a comparative review.
PMID:18591260
Genetic polymorphisms and endometrial cancer risk.
PMID:18588460
Creating and evaluating genetic tests predictive of drug response.
PMID:18587383
A robust framework for detecting structural variations in a genome.
PMID:18586745
Identifying gene-disease associations using centrality on a literature mined gene-interaction network.
PMID:18586725
A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors.
PMID:18586702
MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries.
PMID:18583537
Diverse molecular functions of Hu proteins.
PMID:18581050
A physical map of human Alu repeats cleavage by restriction endonucleases.
PMID:18578890
Regulation of ABCG2 expression at the 3' untranslated region of its mRNA through modulation of transcript stability and protein translation by a putative microRNA in the S1 colon cancer cell line.
PMID:18573883
The principle of recursive genome function.
PMID:18566877
Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: current and developing technologies.
PMID:18565787
The amphioxus genome illuminates vertebrate origins and cephalochordate biology.
PMID:18562680
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes.
PMID:18562677
Meiotic recombination at the ends of chromosomes in Saccharomyces cerevisiae.
PMID:18562657
Comparative analyses of human single- and multilocus tandem repeats.
PMID:18562644
Conserved footprints of APOBEC3G on Hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences.
PMID:18562517
Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains.
PMID:18559114
Mitochondria as chi.
PMID:18558648
Towards liquid chromatography time-scale peptide sequencing and characterization of post-translational modifications in the negative-ion mode using electron detachment dissociation tandem mass spectrometry.
PMID:18555696
L1 mobile element expression causes multiple types of toxicity.
PMID:18555620
Molecular cloning and characterization of a novel transcript variant of Mtsarg1 gene.
PMID:18551385
Evolution of the hyaluronic acid synthesis (has) operon in Streptococcus zooepidemicus and other pathogenic streptococci.
PMID:18551332
CpG dinucleotides and the mutation rate of non-CpG DNA.
PMID:18550801
Genomic sequencing of single microbial cells from environmental samples.
PMID:18550420
Genomic research and incidental findings.
PMID:18547197
Structural basis for the regulation mechanism of the tyrosine kinase CapB from Staphylococcus aureus.
PMID:18547145
Hierarchy of nonhomologous end-joining, single-strand annealing and gene conversion at site-directed DNA double-strand breaks.
PMID:18539610
Patterns of evolution and host gene mimicry in influenza and other RNA viruses.
PMID:18535658
LINE-1 ORF1 protein enhances Alu SINE retrotransposition.
PMID:18534786
The Gordon Wilson Lecture: neurohormonal signaling pathways that link cardiac growth and death.
PMID:18528498
Dunning rat prostate adenocarcinomas and alternative splicing reporters: powerful tools to study epithelial plasticity in prostate tumors in vivo.
PMID:18523850
To gate or not to gate: are the delta subunits in the glutamate receptor family functional ion channels?
PMID:18521762
Trans-regulation of the expression of the transcription factor MtHAP2-1 by a uORF controls root nodule development.
PMID:18519645
Genome size of termites (Insecta, Dictyoptera, Isoptera) and wood roaches (Insecta, Dictyoptera, Cryptocercidae).
PMID:18516576
Human endogenous retrovirus (HERV-K) reverse transcriptase as a breast cancer prognostic marker.
PMID:18516289
Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design.
PMID:18515352
The current excitement about copy-number variation: how it relates to gene duplications and protein families.
PMID:18511261
Genetic susceptibility to cancer: the role of polymorphisms in candidate genes.
PMID:18505952
Identification of mutations in Caenorhabditis elegans that cause resistance to high levels of dietary zinc and analysis using a genomewide map of single nucleotide polymorphisms scored by pyrosequencing.
PMID:18505880
In silico promoters: modelling of cis-regulatory context facilitates target predictio.
PMID:18505473
Mouse segmental duplication and copy number variation.
PMID:18500340
Recombinant adeno-associated virus transduction and integration.
PMID:18500252
Alu element-mediated gene silencing.
PMID:18497743
Targeting the human cancer pathway protein interaction network by structural genomics.
PMID:18487680
DiRE: identifying distant regulatory elements of co-expressed genes.
PMID:18487623
Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method.
PMID:18487259
Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.
PMID:18485226
Aspects of coverage in medical DNA sequencing.
PMID:18485222
Comparative analysis of CpG islands in four fish genomes.
PMID:18483567
Loss of genes implicated in gastric function during platypus evolution.
PMID:18482448
CpG island density and its correlations with genomic features in mammalian genomes.
PMID:18477403
Finishing the finished human chromosome 22 sequence.
PMID:18477386
Estimating the size of the human interactome.
PMID:18474861
LINE-1 methylation status of endogenous DNA double-strand breaks.
PMID:18474527
Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm.
PMID:18474116
The evolution of alternative splicing in the Pax family: the view from the Basal chordate amphioxus.
PMID:18473110
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach.
PMID:18469162
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites.
PMID:18466625
Ancestry-related differences in gene expression: findings may enhance understanding of health disparities between populations.
PMID:18466094
The impact of recombination on nucleotide substitutions in the human genome.
PMID:18464896
Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy.
PMID:18458673
Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells.
PMID:18458335
DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts.
PMID:18456864
Confirming the phylogeny of mammals by use of large comparative sequence data sets.
PMID:18453548
Clinical uses of microarrays in cancer research.
PMID:18453086
Ethical and social implications of genetic testing for communication disorders.
PMID:18452941
A HapMap harvest of insights into the genetics of common disease.
PMID:18451988
Personalized genomic medicine with a patchwork, partially owned genome.
PMID:18449389
Gene-environment interactions in the development of complex disease phenotypes.
PMID:18441400
Genetic determinants of phenotypic diversity in humans.
PMID:18439327
Revisiting Wilson and Jungner in the genomic age: a review of screening criteria over the past 40 years.
PMID:18438522
Bioinformatics in China: a personal perspective.
PMID:18437216
UniPrime: a workflow-based platform for improved universal primer design.
PMID:18424794
The family history: reemergence of an established tool.
PMID:18424345
Analysis of chimpanzee history based on genome sequence alignments.
PMID:18421364
The evolutionary history and tissue mapping of amino acid transporters belonging to solute carrier families SLC32, SLC36, and SLC38.
PMID:18418736
Of impact, metrics and ethics.
PMID:18414852
A primer on ankyrin repeat function in TRP channels and beyond.
PMID:18414734
A scaffold analysis tool using mate-pair information in genome sequencing.
PMID:18414585
Selective binding of sterol regulatory element-binding protein isoforms and co-regulatory proteins to promoters for lipid metabolic genes in liver.
PMID:18413311
The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference.
PMID:18405356
RNA landscape of evolution for optimal exon and intron discrimination.
PMID:18391195
Biogenesis of short intronic repeat 27-nucleotide small RNA from endothelial nitric-oxide synthase gene.
PMID:18390539
Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.
PMID:18384671
Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition.
PMID:18381897
DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.
PMID:18381894
Reconstructing phylogenies and phenotypes: a molecular view of human evolution.
PMID:18380860
Complex alternative splicing.
PMID:18380340
The functional impact of structural variation in humans.
PMID:18378036
Losing helena: the extinction of a drosophila line-like element.
PMID:18377637
Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes.
PMID:18373861
Epigenetic regulation of heterochromatic DNA stability.
PMID:18372168
Snagger: a user-friendly program for incorporating additional information for tagSNP selection.
PMID:18371222
Both selective and neutral processes drive GC content evolution in the human genome.
PMID:18371205
Transcriptional profiling uncovers a network of cholesterol-responsive atherosclerosis target genes.
PMID:18369455
An abundant evolutionarily conserved CSB-PiggyBac fusion protein expressed in Cockayne syndrome.
PMID:18369450
Transposable elements and the evolution of regulatory networks.
PMID:18368054
Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome.
PMID:18366801
Alternative splicing of the G protein-coupled receptor superfamily in human airway smooth muscle diversifies the complement of receptors.
PMID:18362331
Endogenous retroviruses of the chicken genome.
PMID:18361801
Tissue-specific differences in the accumulation of sequence rearrangements with age.
PMID:18358792
Integrating global gene expression analysis and genetics.
PMID:18358333
Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias.
PMID:18356314
Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions.
PMID:18355457
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
PMID:18349386
Genetics and genomics for clinicians.
PMID:18349101
An optimized nested polymerase chain reaction (PCR) approach allows detection and characterization of human immunodeficiency virus type 1 (HIV-1) env and gag genes from clinical samples.
PMID:18348315
PCR-based detection of Pol III-transcribed transposons and its application to the rodent model of ultraviolet response.
PMID:18347948
Comparing whole genomes using DNA microarrays.
PMID:18347592
The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates.
PMID:18346970
Identification of putative endogenous retroviruses actively transcribed in the brain.
PMID:18343986
Genome assembly forensics: finding the elusive mis-assembly.
PMID:18341692
Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus.
PMID:18340040
Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes.
PMID:18339812
Expression of human nPTB is limited by extreme suboptimal codon content.
PMID:18335065
Possible involvement of SINEs in mammalian-specific brain formation.
PMID:18334644
Multifactorial interplay controls the splicing profile of Alu-derived exons.
PMID:18332115
Physiogenomic analysis of localized FMRI brain activity in schizophrenia.
PMID:18330705
Mapping of a new autosomal recessive non-syndromic hearing impairment locus (DFNB45) to chromosome 1q43-q44.
PMID:18325041
A survey on haplotyping algorithms for tightly linked markers.
PMID:18324755
Cross-kingdom patterns of alternative splicing and splice recognition.
PMID:18321378
Show me the data.
PMID:18320078
RetroPred: A tool for prediction, classification and extraction of non-LTR retrotransposons (LINEs & SINEs) from the genome by integrating PALS, PILER, MEME and ANN.
PMID:18317579
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae.
PMID:18316478
SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.
PMID:18312629
Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster.
PMID:18307794
Distinct genomic signatures of adaptation in pre- and postnatal environments during human evolution.
PMID:18305157
The pharmacogenomic era: promise for personalizing attention deficit hyperactivity disorder therapy.
PMID:18295157
Transposable elements as drivers of genomic and biological diversity in vertebrates.
PMID:18293113
Evolutionarily conserved cytogenetic changes in hematological malignancies of dogs and humans--man and his best friend share more than companionship.
PMID:18293109
Recent advances in cotton genomics.
PMID:18288253
The progress on genetic analysis of nasopharyngeal carcinoma.
PMID:18288251
Deletion of many yeast introns reveals a minority of genes that require splicing for function.
PMID:18287520
The use of multiple displacement amplification to amplify complex DNA libraries.
PMID:18285362
Conserved themes in small-RNA-mediated transposon control.
PMID:18282709
Genomic identification of regulatory elements by evolutionary sequence comparison and functional analysis.
PMID:18282510
Alternative splicing of Alu exons--two arms are better than one.
PMID:18276646
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
PMID:18271625
Integrase, LEDGF/p75 and HIV replication.
PMID:18264802
Human Pso4 is a metnase (SETMAR)-binding partner that regulates metnase function in DNA repair.
PMID:18263876
The impact of multiple splice sites in human L1 elements.
PMID:18261861
The diversity of retrotransposons and the properties of their reverse transcriptases.
PMID:18261821
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.
PMID:18256234
Nucleoside analogue reverse transcriptase inhibitors differentially inhibit human LINE-1 retrotransposition.
PMID:18253495
Mechanisms and consequences of small supernumerary marker chromosomes: from Barbara McClintock to modern genetic-counseling issues.
PMID:18252220
Gross deletions involving IGHM, BTK, or Artemis: a model for genomic lesions mediated by transposable elements.
PMID:18252213
Clinical pharmacology--providing tools and expertise for translational medicine.
PMID:18251756
Molecular imaging in oncology.
PMID:18250026
Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection.
PMID:18243097
Progress in unraveling the genetics of coronary artery disease and myocardial infarction.
PMID:18241611
Do Alu repeats drive the evolution of the primate transcriptome?
PMID:18241332
Reviews in molecular biology and biotechnology: transmembrane signaling by G protein-coupled receptors.
PMID:18240029
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI).
PMID:18230160
High frequency of microsatellites in S. cerevisiae meiotic recombination hotspots.
PMID:18226240
Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events.
PMID:18225947
Meta-analysis of 23 type 2 diabetes linkage studies from the International Type 2 Diabetes Linkage Analysis Consortium.
PMID:18223311
Surprises of the genome and "personalized" medicine.
PMID:18222356
Primary T-lymphocytes rescue the replication of HIV-1 DIS RNA mutants in part by facilitating reverse transcription.
PMID:18216043
A genome-wide screen for noncoding elements important in primate evolution.
PMID:18215302
Human endogenous retrovirus-FRD envelope protein (syncytin 2) expression in normal and trisomy 21-affected placenta.
PMID:18215254
LINE-1 family member GCRG123 gene is up-regulated in human gastric signet-ring cell carcinoma.
PMID:18205268
BEN: a novel domain in chromatin factors and DNA viral proteins.
PMID:18203771
Inherent size constraints on prokaryote gene networks due to "accelerating" growth.
PMID:18202872
Loss of LINE-1 activity in the megabats.
PMID:18202382
Viruses associated with human cancer.
PMID:18201576
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons.
PMID:18194517
Suggestive evidence for linkage for restless legs syndrome on chromosome 19p13.
PMID:18193462
The Environmental Polymorphisms Registry: a DNA resource to study genetic susceptibility loci.
PMID:18193459
The animal in the genome: comparative genomics and evolution.
PMID:18192189
Site-specific gene transfer with high efficiency onto a carbon nanotube-loaded electrode.
PMID:18192165
Gene Ontology annotation quality analysis in model eukaryotes.
PMID:18187504
Genome-wide expression profiles of endogenous retroviruses in lymphoid tissues and their biological properties.
PMID:18187179
Core-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution.
PMID:18185983
Ultrafast DNA sequencing on a microchip by a hybrid separation mechanism that gives 600 bases in 6.5 minutes.
PMID:18184818
Effects of template sequence and secondary structure on DNA-templated reactivity.
PMID:18179216
Assessment of programs for ligand binding affinity prediction.
PMID:18172838
Show me the data.
PMID:18166622
High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer.
PMID:18162535
Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals.
PMID:18159944
Sources for comparative studies of placentation. II. Genomic resources.
PMID:18155141
Alternative approach to a heavy weight problem.
PMID:18096750
Maintenance of transposon-free regions throughout vertebrate evolution.
PMID:18093339
Literature Lab: a method of automated literature interrogation to infer biology from microarray analysis.
PMID:18088408
Gene and genon concept: coding versus regulation. A conceptual and information-theoretic analysis of genetic storage and expression in the light of modern molecular biology.
PMID:18087760
Show me the data.
PMID:18086910
Show me the data.
PMID:18086866
Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins.
PMID:18086703
Virtual screening for the discovery of bioactive natural products.
PMID:18084917
ZNF418, a novel human KRAB/C2H2 zinc finger protein, suppresses MAPK signaling pathway.
PMID:18084723
Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells.
PMID:18084025
Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes.
PMID:18083775
DA and Xiao-two giant and composite LTR-retrotransposon-like elements identified in the human genome.
PMID:18083327
Variable transcriptional activity of endogenous retroviruses in human breast cancer.
PMID:18077721
Genomic drift and copy number variation of sensory receptor genes in humans.
PMID:18077390
Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins.
PMID:18077339
DNA transposons and the evolution of eukaryotic genomes.
PMID:18076328
Functional endogenous LINE-1 retrotransposons are expressed and mobilized in rat chloroleukemia cells.
PMID:18073200
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries.
PMID:18072965
A syndromic form of autosomal recessive congenital microcephaly (Jawad syndrome) maps to chromosome 18p11.22-q11.2.
PMID:18071751
Prediction of protein function improving sequence remote alignment search by a fuzzy logic algorithm.
PMID:18066655
Urinary biomarkers in the early diagnosis of acute kidney injury.
PMID:18059454
Glia maturation factor overexpression in neuroblastoma cells activates glycogen synthase kinase-3beta and caspase-3.
PMID:18054898
The haplo-spliceo-transcriptome: common variations in alternative splicing in the human population.
PMID:18054116
Insertional mutagenesis strategies in zebrafish.
PMID:18047701
Transposable elements and the dynamic somatic genome.
PMID:18047697
Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene.
PMID:18047649
Resolving the fast kinetics of cooperative binding: Ca2+ buffering by calretinin.
PMID:18044987
An intronic signal for alternative splicing in the human genome.
PMID:18043753
Identification of DNA basepairing via tunnel-current decay.
PMID:18041859
Evaluating the protein coding potential of exonized transposable element sequences.
PMID:18036258
TEnest: automated chronological annotation and visualization of nested plant transposable elements.
PMID:18032588
Impact of genomics on animal agriculture and opportunities for animal health.
PMID:18022262
Pre-mRNA secondary structures influence exon recognition.
PMID:18020710
The challenges of developing novel antiparasitic drugs.
PMID:18004600
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.
PMID:18003932
Ensembl 2008.
PMID:18000006
A genomewide association study of skin pigmentation in a South Asian population.
PMID:17999355
A paradigm for virus-host coevolution: sequential counter-adaptations between endogenous and exogenous retroviruses.
PMID:17997604
T cell responses to human endogenous retroviruses in HIV-1 infection.
PMID:17997601
Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study.
PMID:17996033
Targeted discovery of novel human exons by comparative genomics.
PMID:17989246
TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.
PMID:17986453
SERpredict: detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements.
PMID:17986331
Initial sequence and comparative analysis of the cat genome.
PMID:17975172
Differential distribution and association of repeat DNA sequences in the lateral element of the synaptonemal complex in rat spermatocytes.
PMID:17968579
Role of APOBEC3 in genetic diversity among endogenous murine leukemia viruses.
PMID:17967065
Exonization of active mouse L1s: a driver of transcriptome evolution?
PMID:17963496
Classification and nomenclature of all human homeobox genes.
PMID:17963489
Human PAML browser: a database of positive selection on human genes using phylogenetic methods.
PMID:17962310
Copy number variants and common disorders: filling the gaps and exploring complexity in genome-wide association studies.
PMID:17953491
Alu recombination-mediated structural deletions in the chimpanzee genome.
PMID:17953488
Biased distributions and decay of long interspersed nuclear elements in the chicken genome.
PMID:17947446
CFGP: a web-based, comparative fungal genomics platform.
PMID:17947331
Short sequence motifs, overrepresented in mammalian conserved non-coding sequences.
PMID:17945028
Systematic analysis of alternative first exons in plant genomes.
PMID:17941993
A macaque's-eye view of human insertions and deletions: differences in mechanisms.
PMID:17941704
Postintegrative gene silencing within the Sleeping Beauty transposition system.
PMID:17938204
ADAM15 gene structure and differential alternative exon use in human tissues.
PMID:17937806
Unique retrotransposon LINE-1 distribution at the Prader-Willi Angelman syndrome locus.
PMID:17932619
Demographic histories of ERV-K in humans, chimpanzees and rhesus monkeys.
PMID:17925874
Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription.
PMID:17922896
Family expansion and gene rearrangements contributed to the functional specialization of PRDM genes in vertebrates.
PMID:17916234
Gel-forming mucins appeared early in metazoan evolution.
PMID:17911254
Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.
PMID:17907803
Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data.
PMID:17907796
Design and implementation of a generalized laboratory data model.
PMID:17897463
Dyneins across eukaryotes: a comparative genomic analysis.
PMID:17897317
The PDZ domain as a complex adaptive system.
PMID:17895993
Information capture using SNPs from HapMap and whole-genome chips differs in a sample of inflammatory and cardiovascular gene-centric regions from genome-wide estimates.
PMID:17895426
Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21.
PMID:17895424
Reverse polarization in amino acid and nucleotide substitution patterns between human-mouse orthologs of two compositional extrema.
PMID:17895298
The Gypsy Database (GyDB) of mobile genetic elements.
PMID:17895280
The G protein-coupled receptor subset of the rat genome.
PMID:17892602
SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages.
PMID:17884916
Telomeric co-localization of the modified base J and contingency genes in the protozoan parasite Trypanosoma cruzi.
PMID:17881368
Sequencing and analyzing the t(1;7) reciprocal translocation breakpoints associated with a case of childhood-onset schizophrenia/autistic disorder.
PMID:17879154
Structural parameterization and functional prediction of antigenic polypeptome sequences with biological activity through quantitative sequence-activity models (QSAM) by molecular electronegativity edge-distance vector (VMED).
PMID:17879071
Osteopenia in Sparc (osteonectin)-deficient mice: characterization of phenotypic determinants of femoral strength and changes in gene expression.
PMID:17878319
OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences.
PMID:17877817
Biochemical characterization of a SET and transposase fusion protein, Metnase: its DNA binding and DNA cleavage activity.
PMID:17877369
Genetics and genomics: a call for papers.
PMID:17875835
Identification of novel candidate genes associated with cleft lip and palate using array comparative genomic hybridisation.
PMID:17873121
DNA sequencing: bench to bedside and beyond.
PMID:17855400
The random versus fragile breakage models of chromosome evolution: a matter of resolution.
PMID:17851692
Dual-specificity splice sites function alternatively as 5' and 3' splice sites.
PMID:17848517
End-sequencing and characterization of silkworm (Bombyx mori) bacterial artificial chromosome libraries.
PMID:17822570
Regulation of transcription of the RNA splicing factor hSlu7 by Elk-1 and Sp1 affects alternative splicing.
PMID:17804646
The diploid genome sequence of an individual human.
PMID:17803354
Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins.
PMID:17786195
Previously described sequence variant in CDK5RAP2 gene in a Pakistani family with autosomal recessive primary microcephaly.
PMID:17764569
Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation.
PMID:17760972
Genomics, biogeography, and the diversification of placental mammals.
PMID:17728403
Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.
PMID:17727702
A model of segmental duplication formation in Drosophila melanogaster.
PMID:17726166
Tissue-dependent paired expression of miRNAs.
PMID:17726050
siRNA-dependent and -independent post-transcriptional cosuppression of the LTR-retrotransposon MAGGY in the phytopathogenic fungus Magnaporthe oryzae.
PMID:17726046
Exonization of the LTR transposable elements in human genome.
PMID:17725822
Patterns of damage in genomic DNA sequences from a Neandertal.
PMID:17715061
Tailor-made zinc-finger transcription factors activate FLO11 gene expression with phenotypic consequences in the yeast Saccharomyces cerevisiae.
PMID:17710146
The birth of new exons: mechanisms and evolutionary consequences.
PMID:17709368
Assessing the social meaning, value and implications of research in genomics.
PMID:17699526
Methods for identifying novel integrin ligands.
PMID:17697887
A physical map of the bovine genome.
PMID:17697342
SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast.
PMID:17696611
A yeast model for target-primed (non-LTR) retrotransposition.
PMID:17683538
Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1.
PMID:17679092
Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution.
PMID:17675364
Human gene organization driven by the coordination of replication and transcription.
PMID:17675363
A periodic pattern of SNPs in the human genome.
PMID:17673700
Alternative polyadenylation produces two major transcripts of Alix.
PMID:17673164
Genomic biology: the epigenomic era opens.
PMID:17671496
Heritability of alternative splicing in the human genome.
PMID:17671095
Bird and mammal sex-chromosome orthologs map to the same autosomal region in a salamander (ambystoma).
PMID:17660573
Genetic susceptibility to peripheral arterial disease: a dark corner in vascular biology.
PMID:17656669
Automated recognition of retroviral sequences in genomic data--RetroTector.
PMID:17636050
Effects of recombination rate on human endogenous retrovirus fixation and persistence.
PMID:17634225
Evolutionary history of mammalian transposons determined by genome-wide defragmentation.
PMID:17630829
A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.
PMID:17626050
Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs).
PMID:17623809
LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss.
PMID:17617907
Conservation of transcriptional sensing systems in prokaryotes: a perspective from Escherichia coli.
PMID:17617412
Online genetic databases informing human genome epidemiology.
PMID:17610726
Analysis of the features and source gene composition of the AluYg6 subfamily of human retrotransposons.
PMID:17603915
The potential of high-content high-throughput microscopy in drug discovery.
PMID:17603554
Genetics of gestational diabetes mellitus and type 2 diabetes.
PMID:17596461
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.
PMID:17594509
Real-time definition of non-randomness in the distribution of genomic events.
PMID:17593969
Rate of recombinational deletion among human endogenous retroviruses.
PMID:17581995
A brief review of short tandem repeat mutation.
PMID:17572359
Identification of common genetic variation that modulates alternative splicing.
PMID:17571926
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
PMID:17571346
The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
PMID:17569856
Detection of DNA structural motifs in functional genomic elements.
PMID:17568009
Identification of higher-order functional domains in the human ENCODE regions.
PMID:17568007
Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas.
PMID:17568004
Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.
PMID:17568002
Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.
PMID:17567994
Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi.
PMID:17567986
The human phylome.
PMID:17567924
LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex.
PMID:17562864
The Tol1 transposable element of the medaka fish moves in human and mouse cells.
PMID:17554475
Glia maturation factor regulation of STAT expression: a novel mechanism in experimental autoimmune encephalomyelitis.
PMID:17551829
RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures.
PMID:17545202
Unravelling the world of cis-regulatory elements.
PMID:17541666
High-density single nucleotide polymorphism array analysis in patients with germline deletions of 22q11.2 and malignant rhabdoid tumor.
PMID:17541642
The selection of acceptable protein mutations.
PMID:17540730
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
PMID:17537823
Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies.
PMID:17537809
Identifying pattern-defined regulatory islands in mammalian genomes.
PMID:17535887
Whole-genome sequencing and assembly with high-throughput, short-read technologies.
PMID:17534434
Chemogenomic approaches to rational drug design.
PMID:17533416
The emergence of alternative 3' and 5' splice site exons from constitutive exons.
PMID:17530917
Establishment of high-resolution FISH mapping system and its application for molecular cytogenetic characterization of chromosomes in newt, Cynops pyrrhogaster (Urodela, Amphibia).
PMID:17525830
Computational and biological inference of gene regulatory networks of the LINE-1 retrotransposon.
PMID:17521869
Comparing segmentations by applying randomization techniques.
PMID:17521423
A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database.
PMID:17521420
Virtual Northern analysis of the human genome.
PMID:17520019
Reducing uncertainty in health-care resource allocation.
PMID:17519908
CAG-encoded polyglutamine length polymorphism in the human genome.
PMID:17519034
Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome.
PMID:17517773
Interchromosomal crossover in human cells is associated with long gene conversion tracts.
PMID:17515608
Germline methylation patterns inferred from local nucleotide frequency of repetitive sequences in the human genome.
PMID:17514347
Sequencing and association analysis of the type 1 diabetes-linked region on chromosome 10p12-q11.
PMID:17509149
Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome.
PMID:17506886
Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates.
PMID:17500592
In search of polymorphic Alu insertions with restricted geographic distributions.
PMID:17498924
Mechanisms controlling production of membrane and secreted immunoglobulin during B cell development.
PMID:17496345
Completing the map of human genetic variation.
PMID:17495918
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
PMID:17495012
An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes.
PMID:17495010
Symbiosis as an adaptive process and source of phenotypic complexity.
PMID:17494762
The neoselectionist theory of genome evolution.
PMID:17494746
Methods for estimating human endogenous retrovirus activities from EST databases.
PMID:17493249
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons.
PMID:17485477
A search engine to identify pathway genes from expression data on multiple organisms.
PMID:17477880
A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array.
PMID:17477871
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes.
PMID:17463089
Mapping of a gene for alopecia with mental retardation syndrome (APMR3) on chromosome 18q11.2-q12.2.
PMID:17451405
Regulatory circuit of human microRNA biogenesis.
PMID:17447837
Algebraic correction methods for computational assessment of clone overlaps in DNA fingerprint mapping.
PMID:17442113
Detecting microsatellites within genomes: significant variation among algorithms.
PMID:17442102
All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition.
PMID:17439959
Origin and evolution of human microRNAs from transposable elements.
PMID:17435244
A recombineering based approach for high-throughput conditional knockout targeting vector construction.
PMID:17426124
A kingdom-specific protein domain HMM library for improved annotation of fungal genomes.
PMID:17425790
Gene expression profiles differentiate between sterile SIRS and early sepsis.
PMID:17414611
From genes to functional classes in the study of biological systems.
PMID:17407596
A new platform linking chromosomal and sequence information.
PMID:17406992
Recent integrations of mammalian Hmg retropseudogenes.
PMID:17406091
Ancient lentiviruses leave their mark.
PMID:17404211
The ancient mariner sails again: transposition of the human Hsmar1 element by a reconstructed transposase and activities of the SETMAR protein on transposon ends.
PMID:17403897
Online resources for SNP analysis: a review and route map.
PMID:17401150
Impact of pharmacogenomics on clinical practice in oncology.
PMID:17397243
Recurrent DNA inversion rearrangements in the human genome.
PMID:17389356
Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components.
PMID:17388687
Genetic resources, genome mapping and evolutionary genomics of the pig (Sus scrofa).
PMID:17384734
Discovery and analysis of the first endogenous lentivirus.
PMID:17384150
Hyperconserved CpG domains underlie Polycomb-binding sites.
PMID:17376869
Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories.
PMID:17375324
Natural epigenetic protection against the I-factor, a Drosophila LINE retrotransposon, by remnants of ancestral invasions.
PMID:17375190
Nonnatural protein-protein interaction-pair design by key residues grafting.
PMID:17372228
Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements.
PMID:17362514
Physical and functional interactions of human endogenous retrovirus proteins Np9 and rec with the promyelocytic leukemia zinc finger protein.
PMID:17360752
A comparative genomics approach to identifying the plasticity transcriptome.
PMID:17355637
Genome-wide identification of spliced introns using a tiling microarray.
PMID:17351133
Hawkeye: an interactive visual analytics tool for genome assemblies.
PMID:17349036
A summer program designed to educate college students for careers in bioinformatics.
PMID:17339396
The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage.
PMID:17339369
A mutation in the lipase H (LIPH) gene underlie autosomal recessive hypotrichosis.
PMID:17333281
A comprehensive crop genome research project: the Superhybrid Rice Genome Project in China.
PMID:17331896
Life sciences and biotechnology in China.
PMID:17331895
Analysis of phenotype-genotype connection: the story of dissecting disease pathogenesis in genomic era in China, and beyond.
PMID:17327209
RNA-editing-mediated exon evolution.
PMID:17326827
Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis.
PMID:17310352
Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome.
PMID:17307883
Molecular evolution of the ependymin protein family: a necessary update.
PMID:17302986
In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells.
PMID:17302974
A family of human microRNA genes from miniature inverted-repeat transposable elements.
PMID:17301878
Copy-number variations add a new layer of complexity in the human genome.
PMID:17296953
Mapping of transcription start sites of human retina expressed genes.
PMID:17286855
Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization.
PMID:17284678
Expression and phylogenetic analyses of human endogenous retrovirus HC2 belonging to the HERV-T family in human tissues and cancer cells.
PMID:17277898
The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis.
PMID:17277359
Enhancer identification through comparative genomics.
PMID:17276707
Genome re-annotation: a wiki solution?
PMID:17274839
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans.
PMID:17274809
Transition-transversion bias is not universal: a counter example from grasshopper pseudogenes.
PMID:17274688
Large-scale identification of novel transcripts in the human genome.
PMID:17267814
A mobile element-based evolutionary history of guenons (tribe Cercopithecini).
PMID:17266768
Considerations in the identification of functional RNA structural elements in genomic alignments.
PMID:17263882
Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus.
PMID:17261799
Reconstitution of an infectious human endogenous retrovirus.
PMID:17257061
Splice site identification using probabilistic parameters and SVM classification.
PMID:17254299
Haploinsufficiency of the SERPINA6 gene is associated with severe muscle fatigue: A de novo mutation in corticosteroid-binding globulin deficiency.
PMID:17245537
Evolutionary history of LINE-1 in the major clades of placental mammals.
PMID:17225861
Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution.
PMID:17222062
Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae.
PMID:17211547
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
PMID:17210932
A tale of two templates: automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices.
PMID:17210930
Biomphalaria glabrata transcriptome: identification of cell-signalling, transcriptional control and immune-related genes from open reading frame expressed sequence tags (ORESTES).
PMID:17208299
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.
PMID:17207965
Frequent but borderline methylation of p16 (INK4a) and TIMP3 in medulloblastoma and sPNET revealed by quantitative analyses.
PMID:17206475
Genetic diversity of 10 X chromosome STRs in northern Portugal.
PMID:17206433
Intron dynamics in ribosomal protein genes.
PMID:17206276
SNPSTR: a database of compound microsatellite-SNP markers.
PMID:17202172
New developments in the InterPro database.
PMID:17202162
The prokineticins: a novel pair of regulatory peptides.
PMID:17200460
Comparative genomic analysis of prion genes.
PMID:17199895
Tissue-specific differences in human transfer RNA expression.
PMID:17194224
Assignment of the gene locus for severe congenital neutropenia to chromosome 1q22 in the original Kostmann family from Northern Sweden.
PMID:17188649
High performance computing in biology: multimillion atom simulations of nanoscale systems.
PMID:17187988
How repetitive are genomes?
PMID:17187668
Evidence for large inversion polymorphisms in the human genome from HapMap data.
PMID:17185644
Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns.
PMID:17181857
Analyzing the cardiac muscle proteome by liquid chromatography-mass spectrometry-based expression proteomics.
PMID:17172675
DNA cleavage and Trp53 differentially affect SINE transcription.
PMID:17171681
Noncoding RNAs database (ncRNAdb).
PMID:17169980
Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome.
PMID:17166280
Evolution of secretin family GPCR members in the metazoa.
PMID:17166275
Genomic selective constraints in murid noncoding DNA.
PMID:17166057
Selection of target sites for mobile DNA integration in the human genome.
PMID:17166054
Searching for sequence directed mutagenesis in eukaryotes.
PMID:17160648
Different levels of alternative splicing among eukaryotes.
PMID:17158149
Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity.
PMID:17157332
Mammalian small nucleolar RNAs are mobile genetic elements.
PMID:17154719
Murine MusD retrotransposon: structure and molecular evolution of an "intracellularized" retrovirus.
PMID:17151128
Variation resources at UC Santa Cruz.
PMID:17151077
PReMod: a database of genome-wide mammalian cis-regulatory module predictions.
PMID:17148480
HIGM syndrome caused by insertion of an AluYb8 element in exon 1 of the CD40LG gene.
PMID:17146684
Transgenic analysis of Dlx regulation in fish tooth development reveals evolutionary retention of enhancer function despite organ loss.
PMID:17146045
Cell divisions are required for L1 retrotransposition.
PMID:17145770
Selection and cloning of poly(rC)-binding protein 2 and Raf kinase inhibitor protein RNA activators of 2',5'-oligoadenylate synthetase from prostate cancer cells.
PMID:17145707
Repetitive sequence environment distinguishes housekeeping genes.
PMID:17141428
Novel porcine repetitive elements.
PMID:17140439
[Schizophrenia, human genetics and genetic counselling. Human genetic counselling as part of the psychiatric/psychotherapeutic treatment concept].
PMID:17139521
Improved repeat identification and masking in Dipterans.
PMID:17137733
Characterization of the short RNAs bound by the P19 suppressor of RNA silencing in mouse embryonic stem cells.
PMID:17135486
Characteristics, causes and evolutionary consequences of male-biased mutation.
PMID:17134994
What makes us human: revisiting an age-old question in the genomic era.
PMID:17134487
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome.
PMID:17134480
Pharmacogenetics and diseases of the colon.
PMID:17133087
Both sense and antisense strands of the LTR of the Schistosoma mansoni Pao-like retrotransposon Sinbad drive luciferase expression.
PMID:17131159
The human SETMAR protein preserves most of the activities of the ancestral Hsmar1 transposase.
PMID:17130240
VISTA Enhancer Browser--a database of tissue-specific human enhancers.
PMID:17130149
Animal models for the study of tendinopathy.
PMID:17127722
Phylogenetic analysis of RhoGAP domain-containing proteins.
PMID:17127216
Active retrotransposition by a synthetic L1 element in mice.
PMID:17124176
Display technologies: application for the discovery of drug and gene delivery agents.
PMID:17123658
Accurate and reliable high-throughput detection of copy number variation in the human genome.
PMID:17122085
Koala retrovirus: a genome invasion in real time.
PMID:17118218
Genome assembly comparison identifies structural variants in the human genome.
PMID:17115057
miRGen: a database for the study of animal microRNA genomic organization and function.
PMID:17108354
Ectodermal dysplasia of hair and nail type: mapping of a novel locus to chromosome 17p12-q21.2.
PMID:17107387
RNA from the 5' end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site.
PMID:17105809
Emergence of primate genes by retrotransposon-mediated sequence transduction.
PMID:17101974
Transposon insertion site profiling chip (TIP-chip).
PMID:17101968
BAC clones generated from sheared DNA.
PMID:17098394
Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions.
PMID:17093051
The frequency of eubacterium-to-eukaryote lateral gene transfers shows significant cross-taxa variation within amoebozoa.
PMID:17086451
Induction of antioxidant and detoxification response by oxidants in cardiomyocytes: evidence from gene expression profiling and activation of Nrf2 transcription factor.
PMID:17081560
Selective inhibition of Alu retrotransposition by APOBEC3G.
PMID:17079095
DNA methylation profiling of human chromosomes 6, 20 and 22.
PMID:17072317
Functional characterization of the promoter for the mouse SPTLC2 gene, which encodes subunit 2 of serine palmitoyltransferase.
PMID:17070807
Similar compositional biases are caused by very different mutational effects.
PMID:17068325
Characterization of pre-insertion loci of de novo L1 insertions.
PMID:17067767
Amplification of histone genes by circular chromosome formation in Saccharomyces cerevisiae.
PMID:17066037
Assessing the number of ancestral alternatively spliced exons in the human genome.
PMID:17062157
Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation.
PMID:17059607
The rate, not the spectrum, of base pair substitutions changes at a GC-content transition in the human NF1 gene region: implications for the evolution of the mammalian genome structure.
PMID:17057231
Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons.
PMID:17055192
The influence of recombination on human genetic diversity.
PMID:17044736
At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription.
PMID:17041225
Identification of insertion hot spots for non-LTR retrotransposons: computational and biochemical application to Entamoeba histolytica.
PMID:17040894
Molecular characterization and genomic distribution of Isis: a new retrotransposon of Drosophila buzzatii.
PMID:17039376
Human heterochromatin proteins form large domains containing KRAB-ZNF genes.
PMID:17038565
ATM and ATR pathways signal alternative splicing of Drosophila TAF1 pre-mRNA in response to DNA damage.
PMID:17030624
Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs.
PMID:17029642
Heterogeneous genomic molecular clocks in primates.
PMID:17029560
Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila.
PMID:17028333
The transposable element landscape of the model legume Lotus japonicus.
PMID:17028332
Alu elements as regulators of gene expression.
PMID:17020921
The piggyBac transposon holds promise for human gene therapy.
PMID:17015820
Generation Scotland: the Scottish Family Health Study; a new resource for researching genes and heritability.
PMID:17014726
Gene mutations and genomic rearrangements in the mouse as a result of transposon mobilization from chromosomal concatemers.
PMID:17009875
Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human.
PMID:17009864
piggyBac is a flexible and highly active transposon as compared to sleeping beauty, Tol2, and Mos1 in mammalian cells.
PMID:17005721
Multiple effects govern endogenous retrovirus survival patterns in human gene introns.
PMID:17005047
Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression.
PMID:17002790
Current concepts in neuroendocrine cancer metabolism.
PMID:17001465
Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2.
PMID:17000640
A path or a new road in laboratory diagnostics? Biological mass spectrometry: facts and perspectives.
PMID:16998599
Reconstructing contiguous regions of an ancestral genome.
PMID:16983148
Spatial organization of transcription by RNA polymerase III.
PMID:16971453
A high-throughput method for cloning and sequencing human immunodeficiency virus type 1 integration sites.
PMID:16971446
Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution.
PMID:16963708
Molecular approaches in the diagnosis of primary immunodeficiency diseases.
PMID:16960849
The distribution of L1 and Alu retroelements in relation to GC content on human sex chromosomes is consistent with the ectopic recombination model.
PMID:16955238
The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression.
PMID:16954381
Isochores exhibit evidence of genes interacting with the large-scale genomic environment.
PMID:16951086
Systematic identification of pseudogenes through whole genome expression evidence profiling.
PMID:16945953
Detection of a gypsy-like sequence in the genome of the cat flea Ctenocephalides felis (Bouché 1835).
PMID:16941190
RNA editing level in the mouse is determined by the genomic repeat repertoire.
PMID:16940548
In vivo requirement of the small subunit of U2AF for recognition of a weak 3' splice site.
PMID:16940179
Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution.
PMID:16939647
Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons.
PMID:16938881
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA.
PMID:16938852
Genetics and proteomics: deciphering gene association studies in critical illness.
PMID:16934133
EGASP: the human ENCODE Genome Annotation Assessment Project.
PMID:16925836
A novel locus for alopecia with mental retardation syndrome (APMR2) maps to chromosome 3q26.2-q26.31.
PMID:16922726
Complex minisatellite rearrangements generated in the total or partial absence of Rad27/hFEN1 activity occur in a single generation and are Rad51 and Rad52 dependent.
PMID:16914748
Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.
PMID:16914452
Comprehensive splice-site analysis using comparative genomics.
PMID:16914448
Gene function correlates with potential for G4 DNA formation in the human genome.
PMID:16914419
Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing.
PMID:16908537
Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication.
PMID:16899447
Radiation hybrid map of the porcine genome comprising 2035 EST loci.
PMID:16897346
Matrix-assisted laser desorption/ionisation, time-of-flight mass spectrometry in genomics research.
PMID:16895448
Population genetics models of competition between transposable element subfamilies.
PMID:16888345
Single nucleotide polymorphisms and breast cancer: not yet a success story.
PMID:16887007
High-resolution comparative mapping among man, cattle and mouse suggests a role for repeat sequences in mammalian genome evolution.
PMID:16882342
L1 retrotransposons in human cancers.
PMID:16877821
The genomic distribution of L1 elements: the role of insertion bias and natural selection.
PMID:16877820
L1 antisense promoter drives tissue-specific transcription of human genes.
PMID:16877819
LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease: mutation detection bias and multiple mechanisms of target gene disruption.
PMID:16877817
The potential regulation of L1 mobility by RNA interference.
PMID:16877813
Links between repeated sequences.
PMID:16877810
Obesity and its therapy: from genes to community action.
PMID:16873005
Ubl4b, an X-derived retrogene, is specifically expressed in post-meiotic germ cells in mammals.
PMID:16872915
PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs.
PMID:16872538
A critical beta6-beta7 loop in the pleckstrin homology domain of ceramide kinase.
PMID:16872273
MicroRNA and 3T3-L1 pre-adipocyte differentiation.
PMID:16870994
Phylogenetically widespread alternative splicing at unusual GYNGYN donors.
PMID:16869967
The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis.
PMID:16867185
From functional genomics to functional immunomics: new challenges, old problems, big rewards.
PMID:16863395
Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences.
PMID:16861299
The complexity of the mammalian transcriptome.
PMID:16857706
Transposable element derived DNaseI-hypersensitive sites in the human genome.
PMID:16857058
Computational identification of transcriptional regulatory elements in DNA sequence.
PMID:16855295
AUG sequences are required to sustain nonsense-codon-mediated suppression of splicing.
PMID:16855285
Strategies for the detection of copy number and other structural variants in the human genome.
PMID:16848978
Neuropeptide B and W: neurotransmitters in an emerging G-protein-coupled receptor system.
PMID:16847439
Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes.
PMID:16846249
Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information.
PMID:16845118
Integration of human immunodeficiency virus type 1 in untreated infection occurs preferentially within genes.
PMID:16840357
Genomic sites of human immunodeficiency virus type 2 (HIV-2) integration: similarities to HIV-1 in vitro and possible differences in vivo.
PMID:16840312
Structure function analysis of SH2D2A isoforms expressed in T cells reveals a crucial role for the proline rich region encoded by SH2D2A exon 7.
PMID:16839418
Systematic analysis of head-to-head gene organization: evolutionary conservation and potential biological relevance.
PMID:16839196
Curation of complex, context-dependent immunological data.
PMID:16836764
U1-like snRNAs lacking complementarity to canonical 5' splice sites.
PMID:16829670
Analysing the developing brain transcriptome with the GenePaint platform.
PMID:16825306
The L1 retrotranspositional stimulation by particulate and soluble cadmium exposure is independent of the generation of DNA breaks.
PMID:16823085
Epigenetic regulation of the rice retrotransposon Tos17.
PMID:16821043
Array-CGH and breast cancer.
PMID:16817944
Introns regulate RNA and protein abundance in yeast.
PMID:16816425
Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses.
PMID:16805923
Comparative genomic analysis links karyotypic evolution with genomic evolution in the Indian muntjac (Muntiacus muntjak vaginalis).
PMID:16791631
The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene?
PMID:16790583
Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions.
PMID:16785431
Essential domains for ribonucleoprotein complex formation required for retrotransposition of telomere-specific non-long terminal repeat retrotransposon SART1.
PMID:16782900
Activation of the nonreceptor protein tyrosine kinase Ack by multiple extracellular stimuli.
PMID:16777958
Effects of random mutations in the human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell environments.
PMID:16775355
Intra- and interindividual epigenetic variation in human germ cells.
PMID:16773567
Human genomic deletions mediated by recombination between Alu elements.
PMID:16773564
Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity.
PMID:16769979
Fitness cost of LINE-1 (L1) activity in humans.
PMID:16766655
Impact of diets and nutrients/drugs on early epigenetic programming.
PMID:16763902
Amphioxus: a peaceful anchovy fillet to illuminate Chordate Evolution (II).
PMID:16763667
MCALIGN2: faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution.
PMID:16762073
Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences.
PMID:16759380
GMF-knockout mice are unable to induce brain-derived neurotrophic factor after exercise.
PMID:16758368
Remarkably high activities of testicular cytochrome c in destroying reactive oxygen species and in triggering apoptosis.
PMID:16757556
LINE FUSION GENES: a database of LINE expression in human genes.
PMID:16756682
The GC content of primates and rodents genomes is not at equilibrium: a reply to Antezana.
PMID:16752218
GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates.
PMID:16752212
Apical sodium dependent bile acid transporter (ASBT, SLC10A2): a potential prodrug target.
PMID:16749855
The G protein-coupled receptor subset of the chicken genome.
PMID:16741557
Physical map-assisted whole-genome shotgun sequence assemblies.
PMID:16741162
Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes.
PMID:16740159
Pathogenesis and vertical transmission of a transplacental rat cytomegalovirus.
PMID:16737550
The jewels of our genome: the search for the genomic changes underlying the evolutionarily unique capacities of the human brain.
PMID:16733552
Protein family expansions and biological complexity.
PMID:16733546
Identification and characterisation of five novel miniature inverted-repeat transposable elements (MITEs) in amphioxus (Branchiostoma floridae).
PMID:16733534
Getting closer to a pre-vertebrate genome: the non-LTR retrotransposons of Branchiostoma floridae.
PMID:16733533
Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers.
PMID:16732192
Cellular inhibitors of long interspersed element 1 and Alu retrotransposition.
PMID:16728505
HapMap, pharmacogenomics, and the goal of personalized prescribing.
PMID:16722846
Imaging biomarkers as surrogate endpoints for drug development.
PMID:16721568
Zinc binding to a regulatory zinc-sensing domain monitored in vivo by using FRET.
PMID:16720702
Phenotypic characterization of DFNA24: prelingual progressive sensorineural hearing impairment.
PMID:16717440
Functional noncoding sequences derived from SINEs in the mammalian genome.
PMID:16717141
Evolution of small nucleolar RNAs in nematodes.
PMID:16714446
Evolutionary tinkering with transposable elements.
PMID:16705033
DFNB68, a novel autosomal recessive non-syndromic hearing impairment locus at chromosomal region 19p13.2.
PMID:16703383
GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats.
PMID:16698959
Overview of the structure of all-AT oligonucleotides: organization in helices and packing interactions.
PMID:16698788
Saccharomyces cerevisiae: a useful model host to study fundamental biology of viral replication.
PMID:16698107
Identification and characterization of piggyBac-like elements in the genome of domesticated silkworm, Bombyx mori.
PMID:16685528
Genome Network and FANTOM3: assessing the complexity of the transcriptome.
PMID:16683037
A simple physical model predicts small exon length variations.
PMID:16683028
Heterotachy in mammalian promoter evolution.
PMID:16683025
Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
PMID:16683019
ASEtrap: a biological method for speeding up the exploration of spliceomes.
PMID:16682744
Alu RNP and Alu RNA regulate translation initiation in vitro.
PMID:16682445
Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.
PMID:16682442
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element.
PMID:16672366
New strategies in drug discovery.
PMID:16671397
Human LINE-1 retrotransposon induces DNA damage and apoptosis in cancer cells.
PMID:16670018
The mapping of DFNB62, a new locus for autosomal recessive non-syndromic hearing impairment, to chromosome 12p13.2-p11.23.
PMID:16650082
Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing.
PMID:16648246
Genomic platforms for cancer research: potential diagnostic and prognostic applications in clinical oncology.
PMID:16648115
Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.
PMID:16643658
Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans.
PMID:16632609
Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates.
PMID:16620374
Archaeology and evolution of transfer RNA genes in the Escherichia coli genome.
PMID:16618964
Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity.
PMID:16618923
Molecular evolution of the periphilin gene in relation to human endogenous retrovirus m element.
PMID:16612547
Newly identified families of human endogenous retroviruses.
PMID:16611924
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression.
PMID:16606704
A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors.
PMID:16606702
An isochore map of human chromosomes.
PMID:16597586
Localization of a novel autosomal recessive nonsyndromic hearing impairment locus DFNB65 to chromosome 20q13.2-q13.32.
PMID:16596430
Locked nucleic acid: high-affinity targeting of complementary RNA for RNomics.
PMID:16594628
Genetic factors in the predisposition to drug-induced hypersensitivity reactions.
PMID:16584129
The effects of mismatch repair and RAD1 genes on interchromosomal crossover recombination in Saccharomyces cerevisiae.
PMID:16582436
The independence of our genome assemblies.
PMID:16576752
Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation.
PMID:16574103
Protein secondary structure prediction for a single-sequence using hidden semi-Markov models.
PMID:16571137
The enigmatic nature of apocrine breast lesions.
PMID:16570182
Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions.
PMID:16566817
Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses.
PMID:16557338
LINE-1 RNA splicing and influences on mammalian gene expression.
PMID:16554555
Multiplex degenerate PCR coupled with an oligo sorbent array for human endogenous retrovirus expression profiling.
PMID:16554552
Detection of 100% of mutations in 124 individuals using a standard UV/Vis microplate reader: a novel concept for mutation scanning.
PMID:16554551
The temporal program of DNA replication: new insights into old questions.
PMID:16552593
Multiple lineage specific expansions within the guanylyl cyclase gene family.
PMID:16549024
Development of an unbiased statistical method for the analysis of unigenic evolution.
PMID:16545116
cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.
PMID:16544192
Distribution of L1-retroposons on the giant sex chromosomes of Microtus cabrerae (Arvicolidae, Rodentia): functional and evolutionary implications.
PMID:16544191
A third approach to gene prediction suggests thousands of additional human transcribed regions.
PMID:16543943
The 3of5 web application for complex and comprehensive pattern matching in protein sequences.
PMID:16542452
Identification and characterization of the CDK12/cyclin L1 complex involved in alternative splicing regulation.
PMID:16537916
Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner.
PMID:16537900
Dual inhibitory effects of APOBEC family proteins on retrotransposition of mammalian endogenous retroviruses.
PMID:16537839
Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.
PMID:16537593
Identification of a genetic cluster influencing memory performance and hippocampal activity in humans.
PMID:16537520
Identification of proangiogenic genes and pathways by high-throughput functional genomics: TBK1 and the IRF3 pathway.
PMID:16537515
Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat.
PMID:16536879
Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]n in the X escape region.
PMID:16533911
Recently mobilized transposons in the human and chimpanzee genomes.
PMID:16532396
Biases and reconciliation in estimates of linkage disequilibrium in the human genome.
PMID:16532390
A mutation in the hair matrix and cuticle keratin KRTHB5 gene causes ectodermal dysplasia of hair and nail type.
PMID:16525032
Mutations of the Drosophila zinc finger-encoding gene vielfältig impair mitotic cell divisions and cause improper chromosome segregation.
PMID:16525017
From genomes to systems: the path with yeast.
PMID:16524836
Crystal structure of Homo sapiens PTD012 reveals a zinc-containing hydrolase fold.
PMID:16522806
CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure.
PMID:16520826
Large-scale mutagenesis and phenotypic screens for the nervous system and behavior in mice.
PMID:16519954
Modification of the Creator recombination system for proteomics applications--improved expression by addition of splice sites.
PMID:16519801
Genome size and metabolic intensity in tetrapods: a tale of two lines.
PMID:16519230
Ancient retroviral insertions among human populations.
PMID:16518567
Large-scale trends in the evolution of gene structures within 11 animal genomes.
PMID:16518452
An isoform of ZBP-89 predisposes the colon to colitis.
PMID:16517939
Multistep microsatellite mutation in the maternally transmitted locus D13S317: a case of maternal allele mismatch in the child.
PMID:16514543
Breakpoint Associated with a novel 2.3 Mb deletion in the VCFS region of 22q11 and the role of Alu (SINE) in recurring microdeletions.
PMID:16512914
dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans.
PMID:16511833
The expanding transcriptome: the genome as the 'Book of Sand'.
PMID:16511566
A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes.
PMID:16510851
SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools.
PMID:16509994
Gamma radiation increases endonuclease-dependent L1 retrotransposition in a cultured cell assay.
PMID:16507671
Methylation-free site patterns along a 1-Mb locus on Chr19 in cancerous and normal cells are similar. A new fast approach for analyzing unmethylated CCGG sites distribution.
PMID:16501994
The fragile breakage versus random breakage models of chromosome evolution.
PMID:16501665
The role of inflammation in the pathogenesis of age-related macular degeneration.
PMID:16500214
Mutational analysis of human eIF4AIII identifies regions necessary for exon junction complex formation and nonsense-mediated mRNA decay.
PMID:16495234
The human LINE-1 retrotransposon creates DNA double-strand breaks.
PMID:16490214
High-throughput isolation of ultra-pure plasmid DNA by a robotic system.
PMID:16483377
Bias of selection on human copy-number variants.
PMID:16482228
A "holistic" kinesin phylogeny reveals new kinesin families and predicts protein functions.
PMID:16481395
Permissive transcriptional activity at the centromere through pockets of DNA hypomethylation.
PMID:16477312
A large family of ancient repeat elements in the human genome is under strong selection.
PMID:16477033
Gene losses during human origins.
PMID:16464126
Features of Arabidopsis genes and genome discovered using full-length cDNAs.
PMID:16463100
Decoding the fine-scale structure of a breast cancer genome and transcriptome.
PMID:16461635
Immunogenomics: molecular hide and seek.
PMID:16460649
Mobilization of RAG-generated signal ends by transposition and insertion in vivo.
PMID:16449665
Transposable elements have contributed to thousands of human proteins.
PMID:16443682
Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line.
PMID:16440055
Human immunodeficiency virus type 1 incorporated with fusion proteins consisting of integrase and the designed polydactyl zinc finger protein E2C can bias integration of viral DNA into a predetermined chromosomal region in human cells.
PMID:16439549
Genomic fossils as a snapshot of the human transcriptome.
PMID:16432206
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters.
PMID:16432200
Teaching an old dog new tricks: SINEs of canine genomic diversity.
PMID:16432182
Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.
PMID:16426464
Distribution of human SNPs and its effect on high-throughput genotyping.
PMID:16425292
Unconventional translation of mammalian LINE-1 retrotransposons.
PMID:16418485
Genome-scale identification of membrane-associated human mRNAs.
PMID:16415983
Divergent patterns of recent retroviral integrations in the human and chimpanzee genomes: probable transmissions between other primates and chimpanzees.
PMID:16415014
The Epc-N domain: a predicted protein-protein interaction domain found in select chromatin associated proteins.
PMID:16412250
The mariner transposons belonging to the irritans subfamily were maintained in chordate genomes by vertical transmission.
PMID:16408242
The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA.
PMID:16407334
Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing.
PMID:16396608
Differential exoprotease activities confer tumor-specific serum peptidome patterns.
PMID:16395409
Genomewide comparative analysis of the highly abundant transposable element DINE-1 suggests a recent transpositional burst in Drosophila yakuba.
PMID:16387876
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
PMID:16381984
HOLLYWOOD: a comparative relational database of alternative splicing.
PMID:16381932
Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice.
PMID:16381819
Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms.
PMID:16376498
A computational screen for mammalian pseudouridylation guide H/ACA RNAs.
PMID:16373490
Transposon-free regions in mammalian genomes.
PMID:16365385
L1 integration in a transgenic mouse model.
PMID:16365384
Large-scale structure of genomic methylation patterns.
PMID:16365381
A genome-wide study of dual coding regions in human alternatively spliced genes.
PMID:16365380
A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution.
PMID:16362483
Selective constraint on noncoding regions of hominid genomes.
PMID:16362073
Splicing regulators: targets and drugs.
PMID:16356274
Transcription-mediated gene fusion in the human genome.
PMID:16344562
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.
PMID:16344560
Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates.
PMID:16344559
A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution.
PMID:16339895
Structure and architecture of the maize genome.
PMID:16339807
Short interspersed elements (SINEs) are a major source of canine genomic diversity.
PMID:16339378
Hotspots of mutation and breakage in dog and human chromosomes.
PMID:16339377
SNP-VISTA: an interactive SNP visualization tool.
PMID:16336665
Engineered human dicentric chromosomes show centromere plasticity.
PMID:16331407
Divergent non-LTR retrotransposon lineages from the genomes of scorpions (Arachnida: Scorpiones).
PMID:16328371
Analysis of repetitive element DNA methylation by MethyLight.
PMID:16326863
The "impact factor" revisited.
PMID:16324222
Canine genomics and genetics: running with the pack.
PMID:16311623
Analysis of vertebrate genomes suggests a new model for clade B serpin evolution.
PMID:16305753
Clinical analysis by microchip capillary electrophoresis.
PMID:16299048
Principal component analysis for predicting transcription-factor binding motifs from array-derived data.
PMID:16297243
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
PMID:16284200
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.
PMID:16283942
MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers.
PMID:16282470
Expression analysis of candidate breast tumour suppressor genes on chromosome 16q.
PMID:16280054
Alternative splicing and protein function.
PMID:16274476
Aging syndrome genes and premature coronary artery disease.
PMID:16262891
A novel autosomal recessive non-syndromic hearing impairment locus (DFNB47) maps to chromosome 2p25.1-p24.3.
PMID:16261342
Gain-of-function screen for genes that affect Drosophila muscle pattern formation.
PMID:16254604
Transcriptional regulation of early transposon elements, an active family of mouse long terminal repeat retrotransposons.
PMID:16254322
Large-scale recombination rate patterns are conserved among human populations.
PMID:16251464
Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse.
PMID:16251388
MAASE: an alternative splicing database designed for supporting splicing microarray applications.
PMID:16251387
Nickel stimulates L1 retrotransposition by a post-transcriptional mechanism.
PMID:16249005
Analysis of the Xenopus Werner syndrome protein in DNA double-strand break repair.
PMID:16247024
Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis.
PMID:16247000
Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster.
PMID:16244705
A method of precise mRNA/DNA homology-based gene structure prediction.
PMID:16242044
A genome-wide survey demonstrates widespread non-linear mRNA in expressed sequences from multiple species.
PMID:16237125
Structural elements of bulk chromatin within metaphase chromosomes.
PMID:16235122
Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary make-up of mammalian genomes.
PMID:16235120
On the possibility of origin of a short element of Drosophila (suffix) from a related long retroelement (F element).
PMID:16229149
Distinct enzyme combinations in AKAP signalling complexes permit functional diversity.
PMID:16228013
Nitric oxide and zinc homeostasis in acute lung injury.
PMID:16222044
Protein molecular function prediction by Bayesian phylogenomics.
PMID:16217548
Regulation of plant defense responses in Arabidopsis by EDR2, a PH and START domain-containing protein.
PMID:16212604
Haplotype analysis of the human endogenous retrovirus locus HERV-K(HML-2.HOM) and its evolutionary implications.
PMID:16211423
Tracking Alu evolution in New World primates.
PMID:16209711
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences.
PMID:16207377
The function and expansion of the Patched- and Hedgehog-related homologs in C. elegans.
PMID:16204193
In silico characterization of the family of PARP-like poly(ADP-ribosyl)transferases (pARTs).
PMID:16202152
Emergence of young human genes after a burst of retroposition in primates.
PMID:16201836
Modeling the amplification dynamics of human Alu retrotransposons.
PMID:16201008
How homologous recombination generates a mutable genome.
PMID:16197735
Uncertainty principle of genetic information in a living cell.
PMID:16197549
Sequence and comparative genomic analysis of actin-related proteins.
PMID:16195354
Roles of organic anion transporters (OATs) and a urate transporter (URAT1) in the pathophysiology of human disease.
PMID:16189627
ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun.
PMID:16184192
Diversification of stem cell molecular repertoire by alternative splicing.
PMID:16183747
Gene therapy imaging in patients for oncological applications.
PMID:16180032
The use of racial, ethnic, and ancestral categories in human genetics research.
PMID:16175499
Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26.
PMID:16172504
A linear memory algorithm for Baum-Welch training.
PMID:16171529
A genome-wide survey of structural variation between human and chimpanzee.
PMID:16169929
Differential gene expression in anatomical compartments of the human eye.
PMID:16168081
Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity.
PMID:16160178
Comparison of transcript profiling on Arabidopsis microarray platform technologies.
PMID:16158238
Human endogenous retroviral elements as indicators of ectopic recombination events in the primate genome.
PMID:16157677
A small family of sushi-class retrotransposon-derived genes in mammals and their relation to genomic imprinting.
PMID:16155747
Comprehensive search for intra- and inter-specific sequence polymorphisms among coding envelope genes of retroviral origin found in the human genome: genes and pseudogenes.
PMID:16150157
Capture of extranuclear DNA at fission yeast double-strand breaks.
PMID:16143617
Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates.
PMID:16140992
Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23.
PMID:16140988
Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome.
PMID:16140779
Letter from the editor: Adenosine-to-inosine RNA editing in Alu repeats in the human genome.
PMID:16138094
Specificity and versatility of SH3 and other proline-recognition domains: structural basis and implications for cellular signal transduction.
PMID:16134966
Meprin beta metalloprotease gene polymorphisms associated with diabetic nephropathy in the Pima Indians.
PMID:16133184
Human subtelomere structure and variation.
PMID:16132815
Two rounds of whole genome duplication in the ancestral vertebrate.
PMID:16128622
Combined evidence annotation of transposable elements in genome sequences.
PMID:16110336
The zebrafish gene map defines ancestral vertebrate chromosomes.
PMID:16109975
Origin and evolution of new exons in rodents.
PMID:16109974
Multiple fates of L1 retrotransposition intermediates in cultured human cells.
PMID:16107723
A human-curated annotation of the Candida albicans genome.
PMID:16103911
Large-scale analysis of adeno-associated virus vector integration sites in normal human cells.
PMID:16103194
Human endogenous retrovirus expression profiles in samples from brains of patients with schizophrenia and bipolar disorders.
PMID:16103141
Identification of RNA editing sites in the SNP database.
PMID:16100382
Localization of a novel autosomal recessive non-syndromic hearing impairment locus DFNB55 to chromosome 4q12-q13.2.
PMID:16098016
Genomic medicine: genetic variation and its impact on the future of health care.
PMID:16096102
The role of mutation accumulation in HIV progression.
PMID:16096099
Transposable elements donate lineage-specific regulatory sequences to host genomes.
PMID:16093685
Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy.
PMID:16092962
Using progenitor strain information to identify quantitative trait nucleotides in outbred mice.
PMID:16085706
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.
PMID:16083503
A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in Ambystoma.
PMID:16079226
Estimating the tempo and mode of gene family evolution from comparative genomic data.
PMID:16077014
Construction of a cytogenetically anchored microsatellite map in rabbit.
PMID:16075371
Transcription factor binding sites in the pol gene intragenic regulatory region of HIV-1 are important for virus infectivity.
PMID:16061936
FAST DB: a website resource for the study of the expression regulation of human gene products.
PMID:16052034
Preferential binding of a G-quadruplex ligand to human chromosome ends.
PMID:16052031
Application of Affymetrix array and Massively Parallel Signature Sequencing for identification of genes involved in prostate cancer progression.
PMID:16042785
The Alu insertion in the CLCN5 gene of a patient with Dent's disease leads to exon 11 skipping.
PMID:16041495
Mouse behavioural analysis in systems biology.
PMID:16035954
Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.
PMID:16034026
Progressive proximal expansion of the primate X chromosome centromere.
PMID:16030148
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.
PMID:16026603
The scale of mutational variation in the murid genome.
PMID:16024822
Identification of novel mammalian growth regulatory factors by genome-scale quantitative image analysis.
PMID:16024821
Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution.
PMID:16024818
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.
PMID:16024817
Ten novel mutations in the molybdenum cofactor genes MOCS1 and MOCS2 and in vitro characterization of a MOCS2 mutation that abolishes the binding ability of molybdopterin synthase.
PMID:16021469
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus.
PMID:16018816
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays.
PMID:16014168
The genomics of probiotic intestinal microorganisms.
PMID:15998456
Conservation anchors in the vertebrate genome.
PMID:15998454
Two high throughput technologies to detect segmental aneuploidies identify new Williams-Beuren syndrome patients with atypical deletions.
PMID:15994861
Enhanced microarray performance using low complexity representations of the transcriptome.
PMID:15987785
Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins.
PMID:15985556
BoS: a large and diverse family of short interspersed elements (SINEs) in Brassica oleracea.
PMID:15983875
Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.
PMID:15983865
A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.
PMID:15983781
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
PMID:15980563
AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts.
PMID:15980558
ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters.
PMID:15980502
Distribution of immunodeficiency fact files with XML--from Web to WAP.
PMID:15978138
The element(s) at the nontranscribed Xist locus of the active X chromosome controls chromosomal replication timing in the mouse.
PMID:15972460
Genomic evolution of MHC class I region in primates.
PMID:15967992
Punctuated duplication seeding events during the evolution of human chromosome 2p11.
PMID:15965031
Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes.
PMID:15964992
A subset of nuclear receptor coregulators act as coupling proteins during synthesis and maturation of RNA transcripts.
PMID:15964789
Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects.
PMID:15959677
Exploring hepatic hormone actions using a compilation of gene expression profiles.
PMID:15953391
Satellog: a database for the identification and prioritization of satellite repeats in disease association studies.
PMID:15949044
A complementation method for functional analysis of mammalian genes.
PMID:15944448
Evolutionary diversity and potential recombinogenic role of integration targets of Non-LTR retrotransposons.
PMID:15944437
Intra- and inter-specific variations in the copy number of two types of retrotransposons from the ectomycorrhizal basidiomycete Tricholoma matsutake.
PMID:15940467
Genetic variations in the gene encoding TFAP2B are associated with type 2 diabetes mellitus.
PMID:15940393
(TG/CA)n repeats in human gene families: abundance and selective patterns of distribution according to function and gene length.
PMID:15935094
Factors affecting statistical power in the detection of genetic association.
PMID:15931375
Analysis of 5' junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5'-end attachment requiring microhomology-mediated end-joining.
PMID:15930490
Dichotomous splicing signals in exon flanks.
PMID:15930489
Positive selection for indel substitutions in the rodent sperm protein catsper1.
PMID:15930155
Gene finding in the chicken genome.
PMID:15924626
Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction.
PMID:15914668
A novel transgenic chimaeric mouse system for the rapid functional evaluation of genes encoding secreted proteins.
PMID:15914664
Genome comparison without alignment using shortest unique substrings.
PMID:15910684
Targeting alternatively spliced sequence features for cancer diagnosis and therapeutics.
PMID:15902958
Genome-scale evidence of the nematode-arthropod clade.
PMID:15892869
Paleogenomic record of the extinction of human endogenous retrovirus ERV9.
PMID:15890939
Size of the protein-coding genome and rate of molecular evolution.
PMID:15883855
The genome of the social amoeba Dictyostelium discoideum.
PMID:15875012
The biased distribution of Alus in human isochores might be driven by recombination.
PMID:15871047
Why are young and old repetitive elements distributed differently in the human genome?
PMID:15871040
Toward predictive models of mammalian cells.
PMID:15869393
Chemical synthesis of proteins.
PMID:15869385
Under the genomic radar: the stealth model of Alu amplification.
PMID:15867427
Fishing for answers with transposons.
PMID:15864468
A novel algorithm for finding interspersed repeat regions.
PMID:15862119
Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.
PMID:15860774
Amplification of whole tumor genomes and gene-by-gene mapping of genomic aberrations from limited sources of fresh-frozen and paraffin-embedded DNA.
PMID:15858140
Evolution and distribution of class II-related endogenous retroviruses.
PMID:15858031
Functional constraint and divergence in the G protein family in Caenorhabditis elegans and Caenorhabditis briggsae.
PMID:15856303
A newly discovered human alpha-globin gene.
PMID:15855277
Polygalacturonase from Sitophilus oryzae: possible horizontal transfer of a pectinase gene from fungi to weevils.
PMID:15841240
SINEs point to abundant editing in the human genome.
PMID:15833131
Gene regulation in planta by plant-derived engineered zinc finger protein transcription factors.
PMID:15830130
Design and synthesis of a 3'-O-allyl photocleavable fluorescent nucleotide as a reversible terminator for DNA sequencing by synthesis.
PMID:15829589
A combinatorial code for splicing silencing: UAGG and GGGG motifs.
PMID:15828859
Genotype, phenotype and cancer: role of low penetrance genes and environment in tumour susceptibility.
PMID:15824445
A hybrid neural network system for prediction and recognition of promoter regions in human genome.
PMID:15822155
A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes.
PMID:15821872
Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs.
PMID:15817567
Functional roles of 3'-terminal structures of template RNA during in vivo retrotransposition of non-LTR retrotransposon, R1Bm.
PMID:15814816
A comprehensive literature review of haplotyping software and methods for use with unrelated individuals.
PMID:15814067
Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana.
PMID:15805491
Multiple mechanisms are implicated in the generation of 5q35 microdeletions in Sotos syndrome.
PMID:15805156
Practical lessons from protein structure prediction.
PMID:15805122
Transcription of the human and rodent SPAM1 / PH-20 genes initiates within an ancient endogenous retrovirus.
PMID:15804358
Chromosome sorting in tetraploid wheat and its potential for genome analysis.
PMID:15802508
The majority of human genes have regions repeated in other human genes.
PMID:15802472
Symmetrical base preferences surrounding HIV-1, avian sarcoma/leukosis virus, and murine leukemia virus integration sites.
PMID:15802467
The genetics of depression and related traits.
PMID:15802088
Precise identification of endogenous proviruses of NFS/N mice participating in recombination with moloney ecotropic murine leukemia virus (MuLV) to generate polytropic MuLVs.
PMID:15795252
Evolutionary cores of domain co-occurrence networks.
PMID:15788102
Localized transfection on arrays of magnetic beads coated with PCR products.
PMID:15782208
Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea.
PMID:15774025
The DNA sequence of the human X chromosome.
PMID:15772651
Evolutionary sequence analysis of complete eukaryote genomes.
PMID:15762985
A microarray configuration to quantify expression levels and relative abundance of splice variants.
PMID:15760843
Phylogenomic approaches to common problems encountered in the analysis of low copy repeats: the sulfotransferase 1A gene family example.
PMID:15752422
CD14-dependent modulation of transcriptional activities of endogenous retroviruses in the lung after injury.
PMID:15744557
Database of mRNA gene expression profiles of multiple human organs.
PMID:15741514
novoSNP, a novel computational tool for sequence variation discovery.
PMID:15741513
Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling.
PMID:15741274
Leaky ribosomal scanning in mammalian genomes: significance of histone H4 alternative translation in vivo.
PMID:15741183
Krüppel-like factors 4 and 5: the yin and yang regulators of cellular proliferation.
PMID:15740636
Function and regulation of Tumbleweed (RacGAP50C) in neuroblast proliferation and neuronal morphogenesis.
PMID:15738386
Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans.
PMID:15737067
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.
PMID:15735639
DNA coiled coils.
PMID:15728387
The mouse RNase 4 and RNase 5/ang 1 locus utilizes dual promoters for tissue-specific expression.
PMID:15722482
Discovery of active proteins directly from combinatorial randomized protein libraries without display, purification or sequencing: identification of novel zinc finger proteins.
PMID:15722478
Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes.
PMID:15718282
Blood-brain barrier genomics, proteomics, and new transporter discovery.
PMID:15717066
Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.
PMID:15716312
Naturally occurring antisense: transcriptional leakage or real overlap?
PMID:15710751
Human endogenous retrovirus HERV-K14 families: status, variants, evolution, and mobilization of other cellular sequences.
PMID:15709013
Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping.
PMID:15706033
The rice nuclear genome continuously integrates, shuffles, and eliminates the chloroplast genome to cause chloroplast-nuclear DNA flux.
PMID:15705954
Integrating alternative splicing detection into gene prediction.
PMID:15705189
LINE-1 amplification accompanies explosive genome repatterning in rodents.
PMID:15702417
Vertebrate-like betagamma-crystallins in the ocular lenses of a copepod.
PMID:15702356
Linking disease-associated genes to regulatory networks via promoter organization.
PMID:15701758
A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon.
PMID:15701756
Smoking-gene interaction and disease development: relevance to pancreatic cancer and atherosclerosis.
PMID:15696395
Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex.
PMID:15695364
Insights into vertebrate evolution from the chicken genome sequence.
PMID:15693954
Isolation, characterization, and evolutionary divergence of mouse RNase 6: evidence for unusual evolution in rodents.
PMID:15693621
Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations.
PMID:15693620
Haldane and the first estimates of the human mutation rate.
PMID:15689624
Automated genomic sequence analysis of the three collagen VI genes: applications to Ullrich congenital muscular dystrophy and Bethlem myopathy.
PMID:15689448
Pooled genomic indexing of rhesus macaque.
PMID:15687293
A genotyping system capable of simultaneously analyzing >1000 single nucleotide polymorphisms in a haploid genome.
PMID:15687291
Activation of pre-mRNA splicing by human RNPS1 is regulated by CK2 phosphorylation.
PMID:15684395
Pharmacogenetic approaches in the treatment of asthma.
PMID:15683609
Evidence for widespread degradation of gene control regions in hominid genomes.
PMID:15678168
The profile of repeat-associated histone lysine methylation states in the mouse epigenome.
PMID:15678104
FAM20: an evolutionarily conserved family of secreted proteins expressed in hematopoietic cells.
PMID:15676076
Noncoding DNA, isochores and gene expression: nucleosome formation potential.
PMID:15673716
Murine endogenous retroviruses and their transcriptional potentials.
PMID:15672595
Fast and reliable prediction of noncoding RNAs.
PMID:15665081
Sorghum genome sequencing by methylation filtration.
PMID:15660154
Evolution of DNA sequence nonhomologies among maize inbreds.
PMID:15659640
Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment.
PMID:15657417
Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays.
PMID:15653641
Stratification of acute myeloid leukemia based on gene expression profiles.
PMID:15646648
Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae.
PMID:15644441
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
PMID:15642101
Microarray-based resequencing of multiple Bacillus anthracis isolates.
PMID:15642093
A novel autosomal recessive nonsyndromic hearing impairment locus (DFNB42) maps to chromosome 3q13.31-q22.3.
PMID:15641023
Estimation of the extent of synteny between Tetraodon nigroviridis and Homo sapiens genomes.
PMID:15638467
Mapping of a novel autosomal recessive nonsyndromic deafness locus (DFNB46) to chromosome 18p11.32-p11.31.
PMID:15637723
Gene and alternative splicing annotation with AIR.
PMID:15632090
Highly conserved non-coding sequences are associated with vertebrate development.
PMID:15630479
Analysis on frequency and density of microsatellites in coding sequences of several eukaryotic genomes.
PMID:15629040
Hereditary persistence of alpha-fetoprotein and H19 expression in liver of BALB/cJ mice is due to a retrovirus insertion in the Zhx2 gene.
PMID:15626755
Plant MITEs: useful tools for plant genetics and genomics.
PMID:15626339
A statistical approach designed for finding mathematically defined repeats in shotgun data and determining the length distribution of clone-inserts.
PMID:15626332
Azolla--a model organism for plant genomic studies.
PMID:15626330
Spatially and temporally controlled gene transfer by electroporation into adherent cells on plasmid DNA-loaded electrodes.
PMID:15613595
Global analysis of gene expression in mammalian kidney.
PMID:15611884
All systems GO for understanding mouse gene function.
PMID:15610553
Generation and analysis of expressed sequence tags from the salt-tolerant mangrove species Avicennia marina (Forsk) Vierh.
PMID:15609053
Alu and L1 retroelements are correlated with the tissue extent and peak rate of gene expression, respectively.
PMID:15608386
HOPPSIGEN: a database of human and mouse processed pseudogenes.
PMID:15608268
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes.
PMID:15608249
The Vertebrate Genome Annotation (Vega) database.
PMID:15608237
The UCSC Proteome Browser.
PMID:15608236
Ensembl 2005.
PMID:15608235
DDBJ in collaboration with mass-sequencing teams on annotation.
PMID:15608189
TPMD: a database and resources of microsatellite marker genotyped in Taiwanese populations.
PMID:15608171
Rfam: annotating non-coding RNAs in complete genomes.
PMID:15608160
Emerging strategies and applications of pharmacogenomics.
PMID:15606999
MARA: a novel approach for highly multiplexed locus-specific SNP genotyping using high-density DNA oligonucleotide arrays.
PMID:15601992
Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics.
PMID:15601538
Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps.
PMID:15601531
Shedding genomic ballast: extensive parallel loss of ancestral gene families in animals.
PMID:15599514
Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation.
PMID:15598822
Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray.
PMID:15596828
The C-value enigma in plants and animals: a review of parallels and an appeal for partnership.
PMID:15596463
Detection of aneuploidies by paralogous sequence quantification.
PMID:15591276
Comparison of splice sites in mammals and chicken.
PMID:15590946
Uprobe: a genome-wide universal probe resource for comparative physical mapping in vertebrates.
PMID:15590945
Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes.
PMID:15590944
Evolution and functional classification of vertebrate gene deserts.
PMID:15590943
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages.
PMID:15590940
A genome-wide survey of segmental duplications that mediate common human genetic variation of chromosomal architecture.
PMID:15588494
DFNB44, a novel autosomal recessive non-syndromic hearing impairment locus, maps to chromosome 7p14.1-q11.22.
PMID:15583425
Increased noncanonical splicing of autoantigen transcripts provides the structural basis for expression of untolerized epitopes.
PMID:15577853
The mouse genome: experimental examination of gene predictions and transcriptional start sites.
PMID:15574821
Reconstructing large regions of an ancestral mammalian genome in silico.
PMID:15574820
Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network.
PMID:15572454
Preferential accessibility to specific genomic loci for the repair of double-strand breaks in human cells.
PMID:15562005
Protein-mediated error correction for de novo DNA synthesis.
PMID:15561997
Distinct genomic integration of MLV and SIV vectors in primate hematopoietic stem and progenitor cells.
PMID:15550989
CLOE: identification of putative functional relationships among genes by comparison of expression profiles between two species.
PMID:15550177
Cell migration and metastasis as targets of small RNA-based molecular genetic analyses.
PMID:15548858
Coding sequences of functioning human genes derived entirely from mobile element sequences.
PMID:15546984
Sequence and comparative analysis of the maize NB mitochondrial genome.
PMID:15542500
Assembly and characterization of heterochromatin and euchromatin on human artificial chromosomes.
PMID:15535865
Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome.
PMID:15534692
Parametric inference for biological sequence analysis.
PMID:15534223
Identification and characterization of a novel form of the human L-dopa decarboxylase mRNA.
PMID:15532536
Genetic predictors of the clinical response to opioid analgesics: clinical utility and future perspectives.
PMID:15530129
Non-recurrent 17p11.2 deletions are generated by homologous and non-homologous mechanisms.
PMID:15526218
The human L1 promoter: variable transcription initiation sites and a major impact of upstream flanking sequence on promoter activity.
PMID:15520289
Whole-genome analysis of Alu repeat elements reveals complex evolutionary history.
PMID:15520288
Serial segmental duplications during primate evolution result in complex human genome architecture.
PMID:15520286
Open reading frame sequencing and structure-based alignment of polypeptides encoded by RT1-Bb, RT1-Ba, RT1-Db, and RT1-Da alleles.
PMID:15517241
Natural genetic variation caused by transposable elements in humans.
PMID:15514065
Variation in sequence and organization of splicing regulatory elements in vertebrate genes.
PMID:15505203
Large-scale cDNA transfection screening for genes related to cancer development and progression.
PMID:15498874
Specific pattern of ionic channel gene expression associated with pacemaker activity in the mouse heart.
PMID:15498808
From ORFeome to biology: a functional genomics pipeline.
PMID:15489336
Human ORFeome version 1.1: a platform for reverse proteomics.
PMID:15489335
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PMID:15489334
A gateway-compatible yeast one-hybrid system.
PMID:15489331
Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs.
PMID:15489325
An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression.
PMID:15489324
Analysis of human mRNAs with the reference genome sequence reveals potential errors, polymorphisms, and RNA editing.
PMID:15489323
Isochore structures in the genome of the plant Arabidopsis thaliana.
PMID:15486696
Genetic steps of mammalian homologous repair with distinct mutagenic consequences.
PMID:15485900
Mammalian circadian biology: elucidating genome-wide levels of temporal organization.
PMID:15485355
An active murine transposon family pair: retrotransposition of "master" MusD copies and ETn trans-mobilization.
PMID:15479948
An intermediate grade of finished genomic sequence suitable for comparative analyses.
PMID:15479945
Genome-wide analyses of avian sarcoma virus integration sites.
PMID:15479807
Pyrosequencing: sequence typing at the speed of light.
PMID:15477652
Identification of endogenous retroviral reading frames in the human genome.
PMID:15476554
Extending the mutual information measure to rank inferred literature relationships.
PMID:15471547
Introns and splicing elements of five diverse fungi.
PMID:15470237
High-level beta-globin expression and preferred intragenic integration after lentiviral transduction of human cord blood stem cells.
PMID:15467834
Retrotransposition-Competent Human LINE-1 Induces Apoptosis in Cancer Cells With Intact p53.
PMID:15467158
Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes.
PMID:15466286
Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements.
PMID:15461819
A comprehensive transcript index of the human genome generated using microarrays and computational approaches.
PMID:15461792
The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny.
PMID:15461422
PhyloGenie: automated phylome generation and analysis.
PMID:15459293
Distinct PAR/IQGAP expression patterns during murine development: implications for thrombin-associated cytoskeletal reorganization.
PMID:15457341
PHR1, a PH domain-containing protein expressed in primary sensory neurons.
PMID:15456885
Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.
PMID:15454550
Duplicative and conservative transpositions of larval serum protein 1 genes in the genus Drosophila.
PMID:15454541
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.
PMID:15452276
High-resolution comparative mapping of pig Chromosome 4, emphasizing the FAT1 region.
PMID:15389320
Sequence composition and genome organization of maize.
PMID:15388850
Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.
PMID:15388799
Clustering of genes coding for DNA binding proteins in a region of atypical evolution of the human genome.
PMID:15383909
Human endogenous retroviruses: transposable elements with potential?
PMID:15373898
Improving specificity of DNA hybridization-based methods.
PMID:15371554
What can we learn from noncoding regions of similarity between genomes?
PMID:15369604
Np9 protein of human endogenous retrovirus K interacts with ligand of numb protein X.
PMID:15367597
Organization and evolution of a gene-rich region of the mouse genome: a 12.7-Mb region deleted in the Del(13)Svea36H mouse.
PMID:15364904
Human, mouse, and rat genome large-scale rearrangements: stability versus speciation.
PMID:15364903
A novel class of mammalian-specific tailless retropseudogenes.
PMID:15364902
Pattern of sequence variation across 213 environmental response genes.
PMID:15364900
Continued colonization of the human genome by mitochondrial DNA.
PMID:15361937
Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models.
PMID:15357876
Over 20% of human transcripts might form sense-antisense pairs.
PMID:15356298
Effects of length and location on the cellular response to double-stranded RNA.
PMID:15353564
Enhancer trapping in zebrafish using the Sleeping Beauty transposon.
PMID:15347431
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
PMID:15345045
EGPred: prediction of eukaryotic genes using ab initio methods after combining with sequence similarity approaches.
PMID:15342559
Widespread RNA editing of embedded alu elements in the human transcriptome.
PMID:15342557
Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions.
PMID:15342556
Comparative analysis of apicomplexa and genomic diversity in eukaryotes.
PMID:15342554
Expansion and contraction of the DUP240 multigene family in Saccharomyces cerevisiae populations.
PMID:15342502
The knockout mouse project.
PMID:15340423
Essential motifs in the 3' untranslated region required for retrotransposition and the precise start of reverse transcription in non-long-terminal-repeat retrotransposon SART1.
PMID:15340053
LINE-1 distribution in Afrotheria and Xenarthra: implications for understanding the evolution of LINE-1 in eutherian genomes.
PMID:15338236
XHM: a system for detection of potential cross hybridizations in DNA microarrays.
PMID:15333145
Large-scale sequencing of the CD33-related Siglec gene cluster in five mammalian species reveals rapid evolution by multiple mechanisms.
PMID:15331780
Probing the active site of YjeE: a vital Escherichia coli protein of unknown function.
PMID:15324301
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences.
PMID:15314653
Retroelements and the human genome: new perspectives on an old relation.
PMID:15310846
Preference of DNA methyltransferases for CpG islands in mouse embryonic stem cells.
PMID:15310660
Detection of retroviral antisense transcripts and promoter activity of the HERV-K(C4) insertion in the MHC class III region.
PMID:15309346
Tissue microarrays for high-throughput molecular pathology.
PMID:15307452
In vivo transcriptional profiling of Plasmodium falciparum.
PMID:15296511
Regeneration and the need for simpler model organisms.
PMID:15293803
The mouse kinome: discovery and comparative genomics of all mouse protein kinases.
PMID:15289607
A non-EST-based method for exon-skipping prediction.
PMID:15289480
The complete genome and proteome of Mycoplasma mobile.
PMID:15289470
Origins of chromosomal rearrangement hotspots in the human genome: evidence from the AZFa deletion hotspots.
PMID:15287977
Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?
PMID:15287975
Detecting single DNA copy number variations in complex genomes using one nanogram of starting DNA and BAC-array CGH.
PMID:15284333
The Retinome - defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium.
PMID:15283859
Human endogenous retrovirus family HERV-K(HML-5): status, evolution, and reconstruction of an ancient betaretrovirus in the human genome.
PMID:15280487
Integrated self-inactivating lentiviral vectors produce full-length genomic transcripts competent for encapsidation and integration.
PMID:15280451
Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence.
PMID:15280243
Comparative genomics: methods and applications.
PMID:15278216
Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2.
PMID:15273327
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization.
PMID:15272118
A YY1-binding site is required for accurate human LINE-1 transcription initiation.
PMID:15272086
5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation.
PMID:15272081
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G.
PMID:15269786
Synaptotagmins are trafficked to distinct subcellular domains including the postsynaptic compartment.
PMID:15263020
Comparative genomic analysis identifies an ADP-ribosylation factor-like gene as the cause of Bardet-Biedl syndrome (BBS3).
PMID:15258860
Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.
PMID:15257761
Identification of 315 genes essential for early zebrafish development.
PMID:15256591
Clustering of DNA sequences in human promoters.
PMID:15256515
Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum.
PMID:15256513
The repetitive landscape of the chicken genome.
PMID:15256510
Comparative evolutionary genomics of androgen-binding protein genes.
PMID:15256509
Preparation of DNA-modified nanoparticles and preliminary study for colorimetric SNP analysis using their selective aggregations.
PMID:15254253
A set of BAC clones spanning the human genome.
PMID:15247347
Generation of longer 3' cDNA fragments from massively parallel signature sequencing tags.
PMID:15247327
Pharmacogenetics of antipsychotic-induced weight gain.
PMID:15243737
Development of a macroarray to specifically analyze immunological gene expression in swine.
PMID:15242943
Structural and functional analysis of rice genome.
PMID:15240912
Distribution of short paired duplications in mammalian genomes.
PMID:15240876
Demarcating the gene-rich regions of the wheat genome.
PMID:15240829
Sequence-based prediction of protein domains.
PMID:15240828
Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes.
PMID:15239832
Analysis of alternative splicing with microarrays: successes and challenges.
PMID:15239822
After 'completion': the changing face of human chromosomes 21 and 22.
PMID:15239819
Evidence for multiple cycles of strand invasion during repair of double-strand gaps in Drosophila.
PMID:15238522
The prevalence of MADH4 and BMPR1A mutations in juvenile polyposis and absence of BMPR2, BMPR1B, and ACVR1 mutations.
PMID:15235019
Post-translational generation of constitutively active cores from larger phosphatases in the malaria parasite, Plasmodium falciparum: implications for proteomics.
PMID:15230980
Low number of mitochondrial pseudogenes in the chicken (Gallus gallus) nuclear genome: implications for molecular inference of population history and phylogenetics.
PMID:15219233
The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species.
PMID:15215424
IsoFinder: computational prediction of isochores in genome sequences.
PMID:15215396
PromoSer: improvements to the algorithm, visualization and accessibility.
PMID:15215378
A web server for performing electronic PCR.
PMID:15215361
Microarray analysis of transposition targets in Escherichia coli: the impact of transcription.
PMID:15210965
Molecular and functional characterization of novel CRFR1 isoforms from the skin.
PMID:15206947
Localization of a novel locus for hereditary nail dysplasia to chromosome 17q25.1-17q25.3.
PMID:15200512
A high proportion of chromosome 21 promoter polymorphisms influence transcriptional activity.
PMID:15200235
Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes.
PMID:15197168
The insertional history of an active family of L1 retrotransposons in humans.
PMID:15197167
A transcript finishing initiative for closing gaps in the human transcriptome.
PMID:15197164
Retrotransposon-derived elements in the mammalian genome: a potential source of disease.
PMID:15190191
After the genome--the phenome?
PMID:15190190
Bacterial alpha2-macroglobulins: colonization factors acquired by horizontal gene transfer from the metazoan genome?
PMID:15186489
Interplay between Drosophila Bloom's syndrome helicase and Ku autoantigen during nonhomologous end joining repair of P element-induced DNA breaks.
PMID:15184650
Candidate gene studies of antipsychotic drug efficacy and drug-induced weight gain.
PMID:15184105
Genome-wide identification of genes likely to be involved in human genetic disease.
PMID:15181176
Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma.
PMID:15176974
High-resolution proteomic mapping in the vertebrate central nervous system: close proximity of connexin35 to NMDA glutamate receptor clusters and co-localization of connexin36 with immunoreactivity for zonula occludens protein-1 (ZO-1).
PMID:15173637
Evidence for interaction between the TCO and NMTC1 loci in familial non-medullary thyroid cancer.
PMID:15173224
Differential alu mobilization and polymorphism among the human and chimpanzee lineages.
PMID:15173113
The small chromosomes of Trypanosoma brucei involved in antigenic variation are constructed around repetitive palindromes.
PMID:15173109
Three ATP-binding cassette transporter genes, Abca14, Abca15, and Abca16, form a cluster on mouse Chromosome 7F3.
PMID:15170222
Nizp1, a novel multitype zinc finger protein that interacts with the NSD1 histone lysine methyltransferase through a unique C2HR motif.
PMID:15169884
Genome annotation of a 1.5 Mb region of human chromosome 6q23 encompassing a quantitative trait locus for fetal hemoglobin expression in adults.
PMID:15169551
The Ro 60 kDa autoantigen: insights into cellular function and role in autoimmunity.
PMID:15168680
Human genome research in China.
PMID:15168679
Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans.
PMID:15166166
In vivo analysis of synaptonemal complex formation during yeast meiosis.
PMID:15166136
Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping.
PMID:15164176
Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes.
PMID:15163705
Activation of cryptic 3' splice sites within introns of cellular genes following gene entrapment.
PMID:15155860
Microfluidic device reads up to four consecutive base pairs in DNA sequencing-by-synthesis.
PMID:15155856
Multi-species sequence comparison reveals dynamic evolution of the elastin gene that has involved purifying selection and lineage-specific insertions/deletions.
PMID:15149554
Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes.
PMID:15148658
A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene.
PMID:15148580
An approach to large scale identification of non-obvious structural similarities between proteins.
PMID:15147578
Secondary structure models of the 3' untranslated regions of diverse R2 RNAs.
PMID:15146081
Multiple groups of endogenous betaretroviruses in mice, rats, and other mammals.
PMID:15140976
Large-scale integration of human genetic and physical maps.
PMID:15140834
A neutral model of transcriptome evolution.
PMID:15138501
Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats.
PMID:15133122
Genomic biodiversity, phylogenetics and coevolution in proteins.
PMID:15130847
ELXR: a resource for rapid exon-directed sequence analysis.
PMID:15128450
Maize DNA-sequencing strategies and genome organization.
PMID:15128439
Construction, characterization and chromosomal mapping of bacterial artificial chromosome (BAC) library of Yunnan snub-nosed monkey (Rhinopithecus bieti).
PMID:15125639
GeneWise and Genomewise.
PMID:15123596
ESTGenes: alternative splicing from ESTs in Ensembl.
PMID:15123595
The otter annotation system.
PMID:15123593
The Ensembl automatic gene annotation system.
PMID:15123590
The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint.
PMID:15123580
Analysis of segmental duplications and genome assembly in the mouse.
PMID:15123579
Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system.
PMID:15115540
[Necessity and usefulness of bioinformatic methods for microarray data analysis].
PMID:15112041
Physicians, genetics and life insurance.
PMID:15111477
L1 and HERV-W retrotransposons are hypomethylated in human ovarian carcinomas.
PMID:15109395
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
PMID:15103394
Detection and evaluation of intron retention events in the human transcriptome.
PMID:15100430
No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
PMID:15096275
Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene.
PMID:15087490
Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny.
PMID:15087486
Periodic explosive expansion of human retroelements associated with the evolution of the hominoid primate.
PMID:15082888
Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene.
PMID:15082550
Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment.
PMID:15078857
The genetic architecture of selection at the human dopamine receptor D4 (DRD4) gene locus.
PMID:15077199
A gene atlas of the mouse and human protein-encoding transcriptomes.
PMID:15075390
Inhibition of glutamate receptor 2 translation by a polymorphic repeat sequence in the 5'-untranslated leaders.
PMID:15071096
Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries.
PMID:15070753
Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression.
PMID:15067211
Structural features of the rice chromosome 4 centromere.
PMID:15064362
FB elements can promote exon shuffling: a promoter-less white allele can be reactivated by FB mediated transposition in Drosophila melanogaster.
PMID:15060822
Repression of PML nuclear body-associated transcription by oxidative stress-activated Bach2.
PMID:15060166
BAC resources for the rat genome project.
PMID:15060022
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome.
PMID:15060021
Integration of the rat recombination and EST maps in the rat genomic sequence and comparative mapping analysis with the mouse genome.
PMID:15060020
The Atlas genome assembly system.
PMID:15060016
Aligning multiple genomic sequences with the threaded blockset aligner.
PMID:15060014
Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project.
PMID:15060010
Insertions and deletions are male biased too: a whole-genome analysis in rodents.
PMID:15059997
Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes.
PMID:15059996
Comparative recombination rates in the rat, mouse, and human genomes.
PMID:15059993
Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes.
PMID:15059992
Recent segmental duplications in the working draft assembly of the brown Norway rat.
PMID:15059990
Hotspots of mammalian chromosomal evolution.
PMID:15059256
The mammalian transcriptome and the function of non-coding DNA sequences.
PMID:15059247
Organization and expression of the SLC36 cluster of amino acid transporter genes.
PMID:15058382
The DNA sequence and analysis of human chromosome 13.
PMID:15057823
Regulation of the MID1 protein function is fine-tuned by a complex pattern of alternative splicing.
PMID:15057556
Proteomics for nasal secretion analysis.
PMID:15056405
Comparison of computational methods for identifying translation initiation sites in EST data.
PMID:15053846
Monosomy 1p36 breakpoints indicate repetitive DNA sequence elements may be involved in generating and/or stabilizing some terminal deletions.
PMID:15053483
Genetics, individuality, and medicine in the 21st century.
PMID:15053009
Long live structural biology.
PMID:15048098
Applicability of tandem mass spectrometry to the automated comparative sequencing of long-chain oligonucleotides.
PMID:15047056
Long-term reinfection of the human genome by endogenous retroviruses.
PMID:15044706
[Molecular-genetic mechanisms of developing the brain based on an embryonic Xenopus model].
PMID:15042834
Phylogenetic analysis of Ciona intestinalis gene superfamilies supports the hypothesis of successive gene expansions.
PMID:15042337
Membrane model for the G-protein-coupled receptor rhodopsin: hydrophobic interface and dynamical structure.
PMID:15041649
A scale invariant clustering of genes on human chromosome 7.
PMID:15040817
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.
PMID:15031317
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
PMID:15024419
Evaluation of monocot and eudicot divergence using the sugarcane transcriptome.
PMID:15020759
Bioinformatical assay of human gene morbidity.
PMID:15020709
A bacterial genetic screen identifies functional coding sequences of the insect mariner transposable element Famar1 amplified from the genome of the earwig, Forficula auricularia.
PMID:15020471
The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations.
PMID:15020430
Velvet, a dominant Egfr mutation that causes wavy hair and defective eyelid development in mice.
PMID:15020428
Human immunodeficiency virus type 1 subtypes have a distinct long terminal repeat that determines the replication rate in a host-cell-specific manner.
PMID:15016888
Fine mapping a gene for pediatric gastroesophageal reflux on human chromosome 13q14.
PMID:15014979
Tempo and mode of evolution of a primate-specific retrotransposon belonging to the LINE 1 family.
PMID:15008424
Standardized phylogenetic tree: a reference to discover functional evolution.
PMID:15008414
Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes.
PMID:15008403
Novel microsatellite markers and single nucleotide polymorphisms refine the tylosis with oesophageal cancer (TOC) minimal region on 17q25 to 42.5 kb: sequencing does not identify the causative gene.
PMID:15007728
Evolutionary implication of human endogenous retrovirus HERV-H family.
PMID:15007706
Long terminal repeat retrotransposons of Mus musculus.
PMID:15003117
[The human genome and advances in medicine: limits and future prospects].
PMID:14998477
Getting into position: the catalytic mechanisms of protein ubiquitylation.
PMID:14998368
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.
PMID:14993201
Rapid isolation of viral integration site reveals frequent integration of HTLV-1 into expressed loci.
PMID:14991527
The human olfactory receptor gene family.
PMID:14983052
Differential recruitment of nuclear receptor coactivators may determine alternative RNA splice site choice in target genes.
PMID:14982999
Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation.
PMID:14982953
Prospects of a computational origin of life endeavor.
PMID:14979655
Identification of novel virulence-associated genes via genome analysis of hypothetical genes.
PMID:14977936
Unlocking hidden genomic sequence.
PMID:14973330
Large-scale determination of the methylation status of retrotransposons in different tissues using a methylation tags approach.
PMID:14973327
ETR-3 and CELF4 protein domains required for RNA binding and splicing activity in vivo.
PMID:14973222
Finding and interpreting genetic variations that are important to ophthalmologists.
PMID:14971589
SNPs in cancer research and treatment.
PMID:14970847
Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome.
PMID:14966531
DNA methylation may restrict but does not determine differential gene expression at the Sgy/Tead2 locus during mouse development.
PMID:14966277
An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes.
PMID:14966268
Statistical analysis of over-represented words in human promoter sequences.
PMID:14963262
Numerous novel annotations of the human genome sequence supported by a 5'-end-enriched cDNA collection.
PMID:14962985
The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures.
PMID:14962984
Whole-genome shotgun assembly and comparison of human genome assemblies.
PMID:14769938
Gene structure conservation aids similarity based gene prediction.
PMID:14764925
Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila.
PMID:14762063
An unappreciated role for RNA surveillance.
PMID:14759258
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
PMID:14759257
Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution.
PMID:14757818
Solution structure and backbone dynamics of the pleckstrin homology domain of the human protein kinase B (PKB/Akt). Interaction with inositol phosphates.
PMID:14755158
Dnmt1 expression in pre- and postimplantation embryogenesis and the maintenance of IAP silencing.
PMID:14749379
Presence of dUTPase in the various human endogenous retrovirus K (HERV-K) families.
PMID:14745533
Method for analyzing signaling networks in complex cellular systems.
PMID:14745015
Design and synthesis of a photocleavable biotinylated nucleotide for DNA analysis by mass spectrometry.
PMID:14744978
Different rates of LINE-1 (L1) retrotransposon amplification and evolution in New World monkeys.
PMID:14743320
Phylogenetic analysis of Sec7-domain-containing Arf nucleotide exchangers.
PMID:14742722
More active human L1 retrotransposons produce longer insertions.
PMID:14742665
Both rare and common polymorphisms contribute functional variation at CHGA, a regulator of catecholamine physiology.
PMID:14740315
3' rapid amplification of cDNA ends (RACE) walking for rapid structural analysis of large transcripts.
PMID:14740256
Duplication, coclustering, and selection of human Alu retrotransposons.
PMID:14736919
Packaging and reverse transcription of snRNAs by retroviruses may generate pseudogenes.
PMID:14730028
Human RNPS1 and its associated factors: a versatile alternative pre-mRNA splicing regulator in vivo.
PMID:14729963
A mutation in PCSK9 causing autosomal-dominant hypercholesterolemia in a Utah pedigree.
PMID:14727179
Protocadherin X ( PCDHX) and Y ( PCDHY) genes; multiple mRNA isoforms encoding variant signal peptides and cytoplasmic domains.
PMID:14727141
A novel Krüppel-Associated Box identified in a panel of mammalian zinc finger proteins.
PMID:14727140
An enhancer-trap LacZ transgene reveals a distinct expression pattern of Kinesin family 26B in mouse embryos.
PMID:14727108
Triplex-forming oligonucleotide target sequences in the human genome.
PMID:14726484
Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT.
PMID:14724739
The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans.
PMID:14718667
Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci.
PMID:14718377
A BAC- and BIBAC-based physical map of the soybean genome.
PMID:14718376
Identification of androgen-coregulated protein networks from the microsomes of human prostate cancer cells.
PMID:14709176
Analysis of sequence variations in several human genes using phosphoramidite bond DNA fragmentation and chip-based MALDI-TOF.
PMID:14707175
Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis.
PMID:14707168
Mapping and initial analysis of human subtelomeric sequence assemblies.
PMID:14707167
Benzimidazole derivatives. 4. The recognition of the voluminous substituent attached to the basic amino group of 5-HT4 receptor antagonists.
PMID:14703122
A comprehensive radiation hybrid map of bovine Chromosome 26 (BTA26): comparative chromosomal organization between HSA10q and BTA26 and BTA28.
PMID:14694908
Comparative sequence analysis of a single-gene conserved segment in mouse and human.
PMID:14694903
Identification of an envelope protein from the FRD family of human endogenous retroviruses (HERV-FRD) conferring infectivity and functional conservation among simians.
PMID:14694139
Genome structure and thymic expression of an endogenous retrovirus in zebrafish.
PMID:14694121
Predictive medicine in non-malignant urological disorders.
PMID:14689222
DNA-methyltransferase 1 mRNA is selectively overexpressed in telencephalic GABAergic interneurons of schizophrenia brains.
PMID:14684836
Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium.
PMID:14681826
GenePaint.org: an atlas of gene expression patterns in the mouse embryo.
PMID:14681479
LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system.
PMID:14681468
HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE.
PMID:14681467
Human protein reference database as a discovery resource for proteomics.
PMID:14681466
AluGene: a database of Alu elements incorporated within protein-coding genes.
PMID:14681464
FREP: a database of functional repeats in mouse cDNAs.
PMID:14681460
ASD: the Alternative Splicing Database.
PMID:14681360
DDBJ in the stream of various biological data.
PMID:14681352
Functional genomics in rodent models of hypertension.
PMID:14678491
Application of chromosomal substitution techniques in gene-function discovery.
PMID:14678490
Identifying genes and genetic variation underlying human diseases and complex phenotypes via recombination mapping.
PMID:14678489
Comparative genomic analysis as a tool for biological discovery.
PMID:14678488
Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila.
PMID:14675495
Evolving strategies for the incorporation of bioinformatics within the undergraduate cell biology curriculum.
PMID:14673489
CoAA, a nuclear receptor coactivator protein at the interface of transcriptional coactivation and RNA splicing.
PMID:14673176
Targeted nuclear import of open reading frame 1 protein is required for in vivo retrotransposition of a telomere-specific non-long terminal repeat retrotransposon, SART1.
PMID:14673147
Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
PMID:14672974
Advances in pharmacogenomic research and development.
PMID:14668540
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB.
PMID:14667252
Role of viruses in human evolution.
PMID:14666532
The breakpoint region of the most common isochromosome, i(17q), in human neoplasia is characterized by a complex genomic architecture with large, palindromic, low-copy repeats.
PMID:14666446
Comparison of the canine and human olfactory receptor gene repertoires.
PMID:14659017
Clone-based systematic haplotyping (CSH): a procedure for physical haplotyping of whole genomes.
PMID:14656974
Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse.
PMID:14656967
A genome-wide survey of human pseudogenes.
PMID:14656963
Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.
PMID:14656962
Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution.
PMID:14656960
Identification and characterization of multi-species conserved sequences.
PMID:14656959
A PCR primer bank for quantitative gene expression analysis.
PMID:14654707
Gene structure prediction in syntenic DNA segments.
PMID:14654703
Secure web book to store structural genomics research data.
PMID:14649296
Establishing the yeast Saccharomyces cerevisiae as a system for expression of human proteins on a proteome-scale.
PMID:14649293
The German cDNA network: cDNAs, functional genomics and proteomics.
PMID:14649292
The EGF-TM7 family: a postgenomic view.
PMID:14647991
The nature and identification of quantitative trait loci: a community's view.
PMID:14634638
Fragile site orthologs FHIT/FRA3B and Fhit/Fra14A2: evolutionarily conserved but highly recombinogenic.
PMID:14630947
Rates of DNA duplication and mitochondrial DNA insertion in the human genome.
PMID:14629044
Strand compositional asymmetries of nuclear DNA in eukaryotes.
PMID:14629042
SVA elements are nonautonomous retrotransposons that cause disease in humans.
PMID:14628287
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
PMID:14624247
Genomics, proteomics and bioinformatics of human heart failure.
PMID:14620738
The dual nature of human extracellular superoxide dismutase: one sequence and two structures.
PMID:14615576
A combinatorial network of evolutionarily conserved myelin basic protein regulatory sequences confers distinct glial-specific phenotypes.
PMID:14614079
Characterizing embryonic gene expression patterns in the mouse using nonredundant sequence-based selection.
PMID:14613977
Nucleotide frequency variation across human genes.
PMID:14613976
POCUS: mining genomic sequence annotation to predict disease genes.
PMID:14611661
Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates.
PMID:14611660
Allelic heterogeneity in LINE-1 retrotransposition activity.
PMID:14610717
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
PMID:14610273
The history of Pediatric Infectious Diseases.
PMID:14605240
Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents.
PMID:14597721
A panoramic view of gene expression in the human kidney.
PMID:14595018
The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.
PMID:14593198
Splice site prediction with quadratic discriminant analysis using diversity measure.
PMID:14576308
Genomic organization and linkage via a bidirectional promoter of the AP-3 (adaptor protein-3) mu3A and AK (adenosine kinase) genes: deletion mutants of AK in Chinese hamster cells extend into the AP-3 mu3A gene.
PMID:14575525
De novo insertion of an Alu sequence in the coding region of the CLCN5 gene results in Dent's disease.
PMID:14569459
The IDDM-associated solitary retroviral promoters DQ-LTR3 and DQ-LTR13 have a distinct impact on the expression of selected DQB1 genes in different cell lines in vitro.
PMID:14566435
Human endogenous retroviruses with transcriptional potential in the brain.
PMID:14564540
Adaptative value of a PKC-PKI55 feedback loop of inhibition that prevents the kinase's deregulation.
PMID:14562957
Regulation of alternative splicing by SRrp86 and its interacting proteins.
PMID:14559993
Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution.
PMID:14557543
Hypomethylation of L1 retrotransposons in colorectal cancer and adjacent normal tissue.
PMID:14534800
An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon.
PMID:14534330
Genetic analysis of NF-kappaB/Rel transcription factors defines functional specificities.
PMID:14532125
Transcriptional regulation of the human LINE-1 retrotransposon L1.2B.
PMID:14530963
Development of human protein reference database as an initial platform for approaching systems biology in humans.
PMID:14525934
Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species.
PMID:14525926
Positive selection on protein-length in the evolution of a primate sperm ion channel.
PMID:14523237
Predicting aberrant CpG island methylation.
PMID:14519846
Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.
PMID:14519201
Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina.
PMID:14519200
Zinc fingers can act as Zn2+ sensors to regulate transcriptional activation domain function.
PMID:14517251
Genome-scale functional profiling of the mammalian AP-1 signaling pathway.
PMID:14514886
DFNB39, a recessive form of sensorineural hearing impairment, maps to chromosome 7q11.22-q21.12.
PMID:14512973
Functional intergenic transcription: a case study of the X-inactivation centre.
PMID:14511490
Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat.
PMID:14508680
Evolution of olfactory receptor genes in the human genome.
PMID:14507991
Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells.
PMID:14506290
An Alu transposition model for the origin and expansion of human segmental duplications.
PMID:14505274
Probe selection for high-density oligonucleotide arrays.
PMID:14500916
Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences.
PMID:14500827
Structures of trinucleotide repeats in human transcripts and their functional implications.
PMID:14500808
Heparan sulfate 2-O-sulfotransferase (Hs2st) and mouse development.
PMID:12975615
Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation.
PMID:12975311
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology.
PMID:12973302
Transcription factories: quantitative studies of nanostructures in the mammalian nucleus.
PMID:12971722
Survey of human genes of retroviral origin: identification and transcriptome of the genes with coding capacity for complete envelope proteins.
PMID:12970426
The COG database: an updated version includes eukaryotes.
PMID:12969510
Repetitive elements in genomes of parasitic protozoa.
PMID:12966140
cDNA2Genome: a tool for mapping and annotating cDNAs.
PMID:12964951
Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences.
PMID:12955498
RNA interference: from an ancient mechanism to a state of the art therapeutic application?
PMID:12955224
Conversion of sub-megasized DNA to desired structures using a novel Bacillus subtilis genome vector.
PMID:12954788
Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes.
PMID:12954770
GANESH: software for customized annotation of genome regions.
PMID:12952886
PANTHER: a library of protein families and subfamilies indexed by function.
PMID:12952881
Assessment of genome-wide protein function classification for Drosophila melanogaster.
PMID:12952880
Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms.
PMID:12952879
Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe.
PMID:12952871
The organization and evolution of the human Y chromosome.
PMID:12952526
Prospects of genetic epidemiology in the 21st century.
PMID:12952133
Comparative analysis of the base biases at the gene terminal portions in seven eukaryote genomes.
PMID:12930971
Insights from human/mouse genome comparisons.
PMID:12925891
EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human.
PMID:12925889
Messenger RNA reprogramming by spliceosome-mediated RNA trans-splicing.
PMID:12925685
Bioinformatics and medical informatics: collaborations on the road to genomic medicine?
PMID:12925552
ISSOL '02. Abstracts of the 13th International Conference on the Origin of Life. Oaxaca, Mexico, June 30-July 5, 2002.
PMID:12924381
Identification of a DNA-binding site and transcriptional target for the EWS-WT1(+KTS) oncoprotein.
PMID:12923058
U1 snRNP-dependent function of TIAR in the regulation of alternative RNA processing of the human calcitonin/CGRP pre-mRNA.
PMID:12917321
The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes.
PMID:12915492
Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25.
PMID:12915487
Locating sequence on FPC maps and selecting a minimal tiling path.
PMID:12915486
Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria.
PMID:12914674
THoR: a tool for domain discovery and curation of multiple alignments.
PMID:12914660
Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster.
PMID:12914658
Recent segmental and gene duplications in the mouse genome.
PMID:12914656
Potential for retroposition by old Alu subfamilies.
PMID:12911029
Atypical expansion in mice of the sensory neuron-specific Mrg G protein-coupled receptor family.
PMID:12909716
An important role for RUNX3 in human L1 transcription and retrotransposition.
PMID:12907736
Horizontal gene transfer: a critical view.
PMID:12902542
A cattle-human comparative map built with cattle BAC-ends and human genome sequence.
PMID:12902387
Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana.
PMID:12902382
A gene recommender algorithm to identify coexpressed genes in C. elegans.
PMID:12902378
Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast.
PMID:12897147
The Drosophila dysfusion basic helix-loop-helix (bHLH)-PAS gene controls tracheal fusion and levels of the trachealess bHLH-PAS protein.
PMID:12897136
Localization of a novel autosomal recessive non-syndromic hearing impairment locus (DFNB38) to 6q26-q27 in a consanguineous kindred from Pakistan.
PMID:12890929
Mass spectrometric analysis of glycans in elucidating the pathogenesis of CDG type IIx.
PMID:12889655
Parallel competition analysis of Saccharomyces cerevisiae strains differing by a single base using polymerase colonies.
PMID:12888536
The ERV-9 LTR enhancer is not blocked by the HS5 insulator and synthesizes through the HS5 site non-coding, long RNAs that regulate LTR enhancer function.
PMID:12888519
Patterns of sequence conservation at termini of long terminal repeat (LTR) retrotransposons and DNA transposons in the human genome: lessons from phage Mu.
PMID:12888514
The human genome contains many types of chimeric retrogenes generated through in vivo RNA recombination.
PMID:12888497
Intracellular mRNA cleavage by 3' tRNase under the direction of 2'-O-methyl RNA heptamers.
PMID:12888494
Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic data.
PMID:12886016
Determination of molecular alignment tensors without backbone resonance assignment: Aid to rapid analysis of protein-protein interactions.
PMID:12878840
The evolution, distribution and diversity of endogenous retroviruses.
PMID:12876457
Effects of the interaction between genotype and environment. Research into the genetic epidemiology of alcohol dependence.
PMID:12875047
Genomic approaches to the genetics of alcoholism.
PMID:12875046
Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers.
PMID:12871923
Novel functional role of CA repeats and hnRNP L in RNA stability.
PMID:12869704
Dragon gene start finder: an advanced system for finding approximate locations of the start of gene transcriptional units.
PMID:12869582
Sequence divergence within transposable element families in the Drosophila melanogaster genome.
PMID:12869581
The origin of human chromosome 1 and its homologs in placental mammals.
PMID:12869576
Gene transfer from organelles to the nucleus: frequent and in big chunks.
PMID:12861078
A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes.
PMID:12857961
Computational approaches to identify promoters and cis-regulatory elements in plant genomes.
PMID:12857799
Revamp a model-status and prospects of the Dictyostelium genome project.
PMID:12856150
On the number of protein-protein interactions in the yeast proteome.
PMID:12853633
The first completed genome sequence from a teleost fish (Fugu rubripes) adds significant diversity to the nuclear receptor superfamily.
PMID:12853622
Bacteria-host communication: the language of hormones.
PMID:12847292
Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii.
PMID:12844361
A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set.
PMID:12844283
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse.
PMID:12840041
HPr kinase/phosphorylase, the sensor enzyme of catabolite repression in Gram-positive bacteria: structural aspects of the enzyme and the complex with its protein substrate.
PMID:12837773
The cadherin superfamily database.
PMID:12836704
Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure.
PMID:12836690
The 2R hypothesis and the human genome sequence.
PMID:12836689
2R or not 2R: testing hypotheses of genome duplication in early vertebrates.
PMID:12836688
More genes in vertebrates?
PMID:12836687
Major transitions in evolution by genome fusions: from prokaryotes to eukaryotes, metazoans, bilaterians and vertebrates.
PMID:12836681
Gene duplication and other evolutionary strategies: from the RNA world to the future.
PMID:12836680
Mapping of 19032 mouse cDNAs on mouse chromosomes.
PMID:12836671
A transcription map of the 6p22.3 reading disability locus identifying candidate genes.
PMID:12834540
Novel types of mutation in the choroideremia ( CHM) gene: a full-length L1 insertion and an intronic mutation activating a cryptic exon.
PMID:12827496
Divergence of the genes on human chromosome 21 between human and other hominoids and variation of substitution rates among transcription units.
PMID:12826612
The role of genetic polymorphisms in environmental health.
PMID:12826477
Automated Gene Ontology annotation for anonymous sequence data.
PMID:12824400
Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes.
PMID:12824365
PromoSer: A large-scale mammalian promoter and transcription start site identification service.
PMID:12824364
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences.
PMID:12824360
The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.
PMID:12819152
Connecting sequence and biology in the laboratory mouse.
PMID:12819150
DNA book.
PMID:12819147
G protein-coupled receptor genes in the FANTOM2 database.
PMID:12819145
Kinesin superfamily proteins (KIFs) in the mouse transcriptome.
PMID:12819144
Phosphoregulators: protein kinases and protein phosphatases of mouse.
PMID:12819143
Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome.
PMID:12819142
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage.
PMID:12819134
The mouse secretome: functional classification of the proteins secreted into the extracellular environment.
PMID:12819133
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.
PMID:12819130
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.
PMID:12819126
Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements.
PMID:12814519
TMC and EVER genes belong to a larger novel family, the TMC gene family encoding transmembrane proteins.
PMID:12812529
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution.
PMID:12810957
Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis.
PMID:12805585
Functional analysis of the endogenous retroviral promoter of the human endothelin B receptor gene.
PMID:12805445
Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms.
PMID:12805277
An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis.
PMID:12805276
Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay.
PMID:12805274
A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes.
PMID:12801414
Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach.
PMID:12801413
What makes a mitochondrion?
PMID:12801406
Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence.
PMID:12799463
Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR.
PMID:12799453
Computational discovery of internal micro-exons.
PMID:12799353
New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes.
PMID:12799346
End-sequence profiling: sequence-based analysis of aberrant genomes.
PMID:12788976
Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs.
PMID:12783626
Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing.
PMID:12783166
Characterization, expression and phylogenetic study of R2R3-MYB genes in orchid.
PMID:12777054
Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice.
PMID:12771206
Identification of conserved regulatory elements by comparative genome analysis.
PMID:12760745
The effect of nonsense codons on splicing: a genomic analysis.
PMID:12756320
Continuous exchange of sequence information between dispersed Tc1 transposons in the Caenorhabditis elegans genome.
PMID:12750326
Genome informatics: current status and future prospects.
PMID:12750305
A high resolution physical and RH map of pig chromosome 6q1.2 and comparative analysis with human chromosome 19q13.1.
PMID:12744726
Human-mouse gene identification by comparative evidence integration and evolutionary analysis.
PMID:12743024
Assessment of SAGE in transcript identification.
PMID:12743019
A genomewide survey of developmentally relevant genes in Ciona intestinalis. IX. Genes for muscle structural proteins.
PMID:12740698
Coincidence of synteny breakpoints with malignancy-related deletions on human chromosome 3.
PMID:12738884
A genomewide survey of developmentally relevant genes in Ciona intestinalis. II. Genes for homeobox transcription factors.
PMID:12736825
Real-time PCR-based method for the estimation of genome sizes.
PMID:12736322
Conservation of human alternative splice events in mouse.
PMID:12736303
Translational control of Scamper expression via a cell-specific internal ribosome entry site.
PMID:12736299
Identifying related L1 retrotransposons by analyzing 3' transduced sequences.
PMID:12734010
Analysis of 5'-end sequences of chimpanzee cDNAs.
PMID:12727913
Selecting open reading frames from DNA.
PMID:12727911
Selection on human genes as revealed by comparisons to chimpanzee cDNA.
PMID:12727903
Genome size evolution in pufferfish: a comparative analysis of diodontid and tetraodontid pufferfish genomes.
PMID:12727902
Retroposed copies of the HMG genes: a window to genome dynamics.
PMID:12727900
Complex evolution of 7E olfactory receptor genes in segmental duplications.
PMID:12727898
Comparative analysis of vertebrate dystrophin loci indicate intron gigantism as a common feature.
PMID:12727896
Functional aspects of protein mono-ADP-ribosylation.
PMID:12727863
Crawling into a new era-the Dictyostelium genome project.
PMID:12727861
Survival of Tdc transposable elements of the En/Spm superfamily in the carrot genome.
PMID:12715153
A semiautomated approach to gene discovery through expressed sequence tag data mining: discovery of new human transporter genes.
PMID:12713273
A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies.
PMID:12704570
Dispersal of NK homeobox gene clusters in amphioxus and humans.
PMID:12704239
Mapping by sequencing the Pneumocystis genome using the ordering DNA sequences V3 tool.
PMID:12702676
MatchMiner: a tool for batch navigation among gene and gene product identifiers.
PMID:12702208
Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence.
PMID:12702206
Comparative genomic tools and databases: providing insights into the human genome.
PMID:12697725
Refined physical map of the human PAX2/HOX11/NFKB2 cancer gene region at 10q24 and relocalization of the HPV6AI1 viral integration site to 14q13.3-q21.1.
PMID:12697057
The genomification of medicine.
PMID:12695360
Human chromosome 7: DNA sequence and biology.
PMID:12690205
Connexin 26 35delG does not represent a mutational hotspot.
PMID:12684873
Interaction of CA repeat polymorphism of the endothelial nitric oxide synthase and hyperhomocysteinemia in acute coronary syndromes: evidence of gender-specific differences.
PMID:12684755
Using analytical ultracentrifugation to study compositional variation in vertebrate genomes.
PMID:12684711
Transcript identification by analysis of short sequence tags--influence of tag length, restriction site and transcript database.
PMID:12682372
Hot L1s account for the bulk of retrotransposition in the human population.
PMID:12682288
The G protein-coupled receptor repertoires of human and mouse.
PMID:12679517
An occupational reproductive research agenda for the third millennium.
PMID:12676620
The microRNAs of Caenorhabditis elegans.
PMID:12672692
High-density map of short tandem repeats across the human major histocompatibility complex.
PMID:12671742
GALA, a database for genomic sequence alignments and annotations.
PMID:12671007
Nonrandom tripeptide sequence distributions at protein carboxyl termini.
PMID:12671002
Classification of race and ethnicity: implications for public health.
PMID:12668755
Overexpressed nuclear factor-kappaB can participate in endogenous C-reactive protein induction, and enhances the effects of C/EBPbeta and signal transducer and activator of transcription-3.
PMID:12667216
Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation.
PMID:12665590
DNA helix: the importance of being GC-rich.
PMID:12654999
Computationally identifying novel NF-kappa B-regulated immune genes in the human genome.
PMID:12654722
Efficient high-throughput resequencing of genomic DNA.
PMID:12654721
Sequence information can be obtained from single DNA molecules.
PMID:12651960
Irruption of genomics in the search for disease related genes.
PMID:12651875
Genome architecture catalyzes nonrecurrent chromosomal rearrangements.
PMID:12649807
High-resolution imaging of normal anatomy, and neural and adrenal malformations in mouse embryos using magnetic resonance microscopy.
PMID:12647873
Mineralized tissue and vertebrate evolution: the secretory calcium-binding phosphoprotein gene cluster.
PMID:12646701
Bioinformatic analysis of the human mu opioid receptor (OPRM1) splice and polymorphic variants.
PMID:12645995
Examination of sequence homology between human chromosome 20 and the mouse genome: intense conservation of many genomic elements.
PMID:12644935
Mice lacking the 68-amino-acid, mammal-specific N-terminal extension of WT1 develop normally and are fertile.
PMID:12640141
Combined analysis of genome scans of dutch and finnish families reveals a susceptibility locus for high-density lipoprotein cholesterol on chromosome 16q.
PMID:12638083
ATLAS: a system to selectively identify human-specific L1 insertions.
PMID:12632328
Rapid direct sequence analysis of the dystrophin gene.
PMID:12632325
More on the sequencing of the human genome.
PMID:12631699
Revisiting the independence of the publicly and privately funded drafts of the human genome.
PMID:12631691
Compounds isolated at the Institute of Microbiology in 1989-2001 and future trends.
PMID:12630311
Sequence analyses of G-protein-coupled receptors: similarities to rhodopsin.
PMID:12627940
A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS.
PMID:12624187
The spatial targeting and nuclear matrix binding domains of SRm160.
PMID:12624182
Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions.
PMID:12620123
Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22.
PMID:12620117
Schizosaccharomyces pombe essential genes: a pilot study.
PMID:12618370
Segmental duplications in euchromatic regions of human chromosome 5: a source of evolutionary instability and transcriptional innovation.
PMID:12618367
Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.
PMID:12618366
Role of pharmacogenomics in individualising treatment with SSRIs.
PMID:12617694
Molecular classification of familial non-BRCA1/BRCA2 breast cancer.
PMID:12610208
Target discovery and validation in the post-genomic era.
PMID:12608710
The Tre2 (USP6) oncogene is a hominoid-specific gene.
PMID:12604796
Genome-wide targeted search for human specific and polymorphic L1 integrations.
PMID:12601470
Transgenerational inheritance of epigenetic states at the murine Axin(Fu) allele occurs after maternal and paternal transmission.
PMID:12601169
The transcriptional activity of human Chromosome 22.
PMID:12600945
Relevance of sequence and structure elements for deletion events in the dystrophin gene major hot-spot.
PMID:12596052
Pyruvate carboxylase is an essential protein in the assembly of yeast peroxisomal oligomeric alcohol oxidase.
PMID:12589070
A P-element insertion screen identified mutations in 455 novel essential genes in Drosophila.
PMID:12586707
Detection and analysis of spliced chimeric mRNAs in sequence databanks.
PMID:12582262
Influences of chromosome size, gene density and nuclear position on the frequency of constitutional translocations in the human population.
PMID:12575798
Large differences between LINE-1 amplification rates in the human and chimpanzee lineages.
PMID:12574987
A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG.
PMID:12574126
Tracking an embryonic L1 retrotransposition event.
PMID:12569170
A new twist on transposons: the maize genome harbors helitron insertion.
PMID:12566572
A complexity reduction algorithm for analysis and annotation of large genomic sequences.
PMID:12566410
Sequence analysis of a functional Drosophila centromere.
PMID:12566396
Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p.
PMID:12566394
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.
PMID:12566392
A novel algorithm for computational identification of contaminated EST libraries.
PMID:12560505
Demystified. Human endogenous retroviruses.
PMID:12560456
Of urchins and men: evolution of an alternative splicing unit in fibroblast growth factor receptor genes.
PMID:12554864
Future directions in protein function prediction.
PMID:12549818
Chromatin insulation by a transcriptional activator.
PMID:12547916
The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-A resolution reveals structural microheterogeneity of protein and solvation.
PMID:12547803
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
PMID:12537575
Whole-genome analysis of animal A- and B-type cyclins.
PMID:12537559
The repertoire of protein kinases encoded in the draft version of the human genome: atypical variations and uncommon domain combinations.
PMID:12537555
Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level.
PMID:12537549
Computational comparison of two mouse draft genomes and the human golden path.
PMID:12537546
Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.
PMID:12529507
The comprehensive mouse radiation hybrid map densely cross-referenced to the recombination map: a tool to support the sequence assemblies.
PMID:12529315
Strategies and tools for whole-genome alignments.
PMID:12529308
Distinguishing regulatory DNA from neutral sites.
PMID:12529307
Pericentromeric duplications in the laboratory mouse.
PMID:12529306
Genome rearrangements in mammalian evolution: lessons from human and mouse genomes.
PMID:12529304
Reevaluating human gene annotation: a second-generation analysis of chromosome 22.
PMID:12529303
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution.
PMID:12529302
Cross-species sequence comparisons: a review of methods and available resources.
PMID:12529301
The phylogenetic diversity of eukaryotic transcription.
PMID:12527774
Nucleotide variability at G6pd and the signature of malarial selection in humans.
PMID:12524354
Vanishing GC-rich isochores in mammalian genomes.
PMID:12524353
The evolution of isochores: evidence from SNP frequency distributions.
PMID:12524350
Telomeric P elements associated with cytotype regulation of the P transposon family in Drosophila melanogaster.
PMID:12524339
Application of DNA microarrays in pharmacogenomics and toxicogenomics.
PMID:12523654
Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species.
PMID:12520053
The InterPro Database, 2003 brings increased coverage and new features.
PMID:12520011
ASAP: the Alternative Splicing Annotation Project.
PMID:12519958
ParaDB: a tool for paralogy mapping in vertebrate genomes.
PMID:12519948
The UCSC Genome Browser Database.
PMID:12519945
The esterase and PHD domains in CR1-like non-LTR retrotransposons.
PMID:12519904
A second kindred linked to DFNA20 (17q25.3) reduces the genetic interval.
PMID:12519370
Sequence variations in the public human genome data reflect a bottlenecked population history.
PMID:12502794
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans.
PMID:12502788
Cynomolgus monkey testicular cDNAs for discovery of novel human genes in the human genome sequence.
PMID:12498619
Isolation and biochemical characterization of LEAP-2, a novel blood peptide expressed in the liver.
PMID:12493837
Functional second genes generated by retrotransposition of the X-linked ribosomal protein genes.
PMID:12490704
Common variations in noncoding regions of the human natriuretic peptide receptor A gene have quantitative effects.
PMID:12483301
Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome.
PMID:12481052
An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa.
PMID:12477937
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
PMID:12477932
POTE, a highly homologous gene family located on numerous chromosomes and expressed in prostate, ovary, testis, placenta, and prostate cancer.
PMID:12475935
The transcription cycle of RNA polymerase II in living cells.
PMID:12473686
HapScope: a software system for automated and visual analysis of functionally annotated haplotypes.
PMID:12466546
Highly efficient modification of bacterial artificial chromosomes (BACs) using novel shuttle vectors containing the R6Kgamma origin of replication.
PMID:12466304
A scalable high-throughput chemical synthesizer.
PMID:12466300
Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing.
PMID:12466299
Retroposed new genes out of the X in Drosophila.
PMID:12466289
Selecting for functional alternative splices in ESTs.
PMID:12466287
Distribution and characterization of regulatory elements in the human genome.
PMID:12466286
Evidence for a fast, intrachromosomal conversion mechanism from mapping of nucleotide variants within a homogeneous alpha-satellite DNA array.
PMID:12466285
A common mechanism for mitotic inactivation of C2H2 zinc finger DNA-binding domains.
PMID:12464629
Accessing genomic data through XML-based remote procedure calls.
PMID:12463907
Delivering bioinformatics training: bridging the gaps between computer science and biomedicine.
PMID:12463819
Optimizing gene expression analysis in archival brain tissue.
PMID:12462400
A long terminal repeat retrotransposon of fission yeast has strong preferences for specific sites of insertion.
PMID:12455970
Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica.
PMID:12455953
Highly condensed potato pericentromeric heterochromatin contains rDNA-related tandem repeats.
PMID:12454086
Identification of genes that are downregulated in the absence of the POU domain transcription factor pou3f1 (Oct-6, Tst-1, SCIP) in sciatic nerve.
PMID:12451123
Map error reduction: using genetic and sequence-based physical maps to order closely linked markers.
PMID:12446985
Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila.
PMID:12446571
Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases.
PMID:12445335
Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.
PMID:12441385
SNP genotyping on a genome-wide amplified DOP-PCR template.
PMID:12434007
Comparison of whole genome assemblies of the human genome.
PMID:12434005
Finding signals that regulate alternative splicing in the post-genomic era.
PMID:12429065
Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch.
PMID:12426391
Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs.
PMID:12421765
Identification of new herpesvirus gene homologs in the human genome.
PMID:12421761
Identification of candidate genes regulating HDL cholesterol using a chromosomal region expression array.
PMID:12421756
Segmental polymorphisms in the proterminal regions of a subset of human chromosomes.
PMID:12421753
Signatures of domain shuffling in the human genome.
PMID:12421750
Structural characterization of the human proteome.
PMID:12421749
Promoter proximal splice sites enhance transcription.
PMID:12414732
Gene expression studies on soft tissue tumors.
PMID:12414500
Human L1 element target-primed reverse transcription in vitro.
PMID:12411507
EZ-Retrieve: a web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites.
PMID:12409480
tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.
PMID:12403461
Protein kinase CK2: structure, regulation and role in cellular decisions of life and death.
PMID:12396231
Comparative proteome analysis of human temporal cortex lobes by two-dimensional electrophoresis and identification of selected common proteins.
PMID:12396097
Receptor pharmacogenetics: relevance to CNS syndromes.
PMID:12392580
A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes.
PMID:12391299
Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate.
PMID:12384572
Birth and death of protein domains: a simple model of evolution explains power law behavior.
PMID:12379152
Histidine protein kinases: key signal transducers outside the animal kingdom.
PMID:12372152
Variations in abundance: genome-wide responses to genetic variation and vice versa.
PMID:12372150
Molecular archeology of L1 insertions in the human genome.
PMID:12372140
On the importance of being finished.
PMID:12372139
Computer assisted cloning of human neutral alpha-glucosidase C (GANC): a new paralog in the glycosyl hydrolase gene family 31.
PMID:12370436
Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome.
PMID:12368471
Retroelement distributions in the human genome: variations associated with age and proximity to genes.
PMID:12368240
Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome.
PMID:12368239
Current methods of gene prediction, their strengths and weaknesses.
PMID:12364589
Genetic and physiological data implicating the new human gene G72 and the gene for D-amino acid oxidase in schizophrenia.
PMID:12364586
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors.
PMID:12297621
Genetics of schizophrenia: from animal models to clinical studies.
PMID:12271789
The SPOT technique as a tool for studying protein tyrosine phosphatase substrate specificities.
PMID:12237455
Autism: in search of susceptibility genes.
PMID:12230302
Sushi gets serious: the draft genome sequence of the pufferfish Fugu rubripes.
PMID:12225591
Military research needs in biomedical informatics.
PMID:12223503
Cures for the Third World's problems: the application of genomics to the diseases plaguing the developing world may have huge medical and economic benefits for those countries and might even prevent armed conflict.
PMID:12223456
The functional importance of disease-associated mutation.
PMID:12220483
Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags.
PMID:12213963
Deterministic mutation rate variation in the human genome.
PMID:12213772
Active Alu element "A-tails": size does matter.
PMID:12213770
Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region.
PMID:12213769
A new method for large scale isolation of kidney glomeruli from mice.
PMID:12213707
Human diallelic insertion/deletion polymorphisms.
PMID:12205564
Dictionary-driven protein annotation.
PMID:12202776
Genome-wide detection of tissue-specific alternative splicing in the human transcriptome.
PMID:12202761
Synthesis and polymerase incorporation of 5'-amino-2',5'-dideoxy-5'-N-triphosphate nucleotides.
PMID:12202759
Inactivation of CMP-N-acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution.
PMID:12192086
Classification of human B-ZIP proteins based on dimerization properties.
PMID:12192032
Genetic linkage of attention-deficit/hyperactivity disorder on chromosome 16p13, in a region implicated in autism.
PMID:12187510
A nonsense mutation in the gene encoding 2'-5'-oligoadenylate synthetase/L1 isoform is associated with West Nile virus susceptibility in laboratory mice.
PMID:12186974
Transcriptome analysis of the retina.
PMID:12186651
The SWIRM domain: a conserved module found in chromosomal proteins points to novel chromatin-modifying activities.
PMID:12186646
The DNA-binding region of RAG 1 is not a homeodomain.
PMID:12186638
Interactions between two fission yeast serine/arginine-rich proteins and their modulation by phosphorylation.
PMID:12186627
The very youngest science.
PMID:12186170
Promising deliveries, delivering promises.
PMID:12186158
Application of physiological genomics to the study of hearing disorders.
PMID:12181277
DNA probes on beads arrayed in a capillary, 'Bead-array', exhibited high hybridization performance.
PMID:12177315
A functional gene discovery in the Fas-mediated pathway to apoptosis by analysis of transiently expressed randomized hybrid-ribozyme libraries.
PMID:12177303
Parallel construction of orthologous sequence-ready clone contig maps in multiple species.
PMID:12176935
Automated de novo identification of repeat sequence families in sequenced genomes.
PMID:12176934
Functional cloning, sorting, and expression profiling of nucleic acid-binding proteins.
PMID:12176925
Predicting protein cellular localization using a domain projection method.
PMID:12176924
Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.
PMID:12172016
Conversion of nucleotides sequences into genomic signals.
PMID:12169214
Enzyme activity profiles of the secreted and membrane proteome that depict cancer cell invasiveness.
PMID:12149457
Visualizing the genome: techniques for presenting human genome data and annotations.
PMID:12149135
Binding of FGF-1 variants to protein kinase CK2 correlates with mitogenicity.
PMID:12145206
Mutations in the DNAH11 (axonemal heavy chain dynein type 11) gene cause one form of situs inversus totalis and most likely primary ciliary dyskinesia.
PMID:12142464
Single nucleotide polymorphism seeking long term association with complex disease.
PMID:12140314
Tracing the LINEs of human evolution.
PMID:12138175
Does hereditary metabolic disease modulate senescence and ageing?
PMID:12137233
New names for old disciplines.
PMID:12137224
Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes.
PMID:12136119
Multiplex SNP genotyping in pooled DNA samples by a four-colour microarray system.
PMID:12136118
Selective stimulation of translational expression by Alu RNA.
PMID:12136107
Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences.
PMID:12136103
NotI flanking sequences: a tool for gene discovery and verification of the human genome.
PMID:12136098
General statistics of stochastic process of gene expression in eukaryotic cells.
PMID:12136033
Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice.
PMID:12136031
Chromosomal elements evolve at different rates in the Drosophila genome.
PMID:12136017
Bench-to-bedside review: fulfilling promises of the Human Genome Project.
PMID:12133180
Ischemia induces a translocation of the splicing factor tra2-beta 1 and changes alternative splicing patterns in the brain.
PMID:12122051
Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing.
PMID:12119366
Hint, Fhit, and GalT: function, structure, evolution, and mechanism of three branches of the histidine triad superfamily of nucleotide hydrolases and transferases.
PMID:12119013
E. coli chromosomal DNA in a transgene locus created by microprojectile bombardment in tobacco.
PMID:12113463
Simultaneous sequencing of multiple polymerase chain reaction products and combined polymerase chain reaction with cycle sequencing in single reactions.
PMID:12107086
Expression and genomic analysis of midasin, a novel and highly conserved AAA protein distantly related to dynein.
PMID:12102729
TAPP1 and TAPP2 are targets of phosphatidylinositol 3-kinase signaling in B cells: sustained plasma membrane recruitment triggered by the B-cell antigen receptor.
PMID:12101241
Finding the needle in the haystack: why high-throughput screening is good for your health.
PMID:12100740
GFScan: a gene family search tool at genomic DNA level.
PMID:12097353
Validation of DNA sequences using mass spectrometry coupled with nucleoside mass tagging.
PMID:12097352
Single nucleotide polymorphism mapping using genome-wide unique sequences.
PMID:12097348
Alu-containing exons are alternatively spliced.
PMID:12097342
The role of lineage-specific gene family expansion in the evolution of eukaryotes.
PMID:12097341
A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation.
PMID:12096187
Evidence consistent with human L1 retrotransposition in maternal meiosis I.
PMID:12094329
Full-length messenger RNA sequences greatly improve genome annotation.
PMID:12093376
Estimation of genetic distances from human and mouse introns.
PMID:12093375
ORMDL proteins are a conserved new family of endoplasmic reticulum membrane proteins.
PMID:12093374
Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome.
PMID:12087181
The chAB4 and NF1-related long-range multisequence DNA families are contiguous in the centromeric heterochromatin of several human chromosomes.
PMID:12087175
Obtaining reliable information from minute amounts of RNA using cDNA microarrays.
PMID:12086591
Reduced risk of synovial sarcoma in females: X-chromosome inactivation?
PMID:12085251
SKIP is an indispensable factor for Caenorhabditis elegans development.
PMID:12084813
Genetics and social class.
PMID:12080161
Maternal transmission of P element transposase activity in Drosophila melanogaster depends on the last P intron.
PMID:12077325
Novel endogenous retrovirus in rabbits previously reported as human retrovirus 5.
PMID:12072509
A comprehensive analysis of recently integrated human Ta L1 elements.
PMID:12070800
Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments.
PMID:12070344
The family of toxin-related ecto-ADP-ribosyltransferases in humans and the mouse.
PMID:12070318
Nutritional genomics.
PMID:12065270
An electrochemical detection scheme for identification of single nucleotide polymorphisms using hairpin-forming probes.
PMID:12060693
Evolution of gene fusions: horizontal transfer versus independent events.
PMID:12049665
Murine NFX.1: isolation and characterization of its messenger RNA, mapping of its chromosomal location and assessment of its developmental expression.
PMID:12047746
Role of synaptotagmin in Ca2+-triggered exocytosis.
PMID:12047220
The human genome browser at UCSC.
PMID:12045153
Tandem repeats in protein coding regions of primate genes.
PMID:12045144
Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine.
PMID:12045143
Pattern of organization of human mitochondrial pseudogenes in the nuclear genome.
PMID:12045142
Spinocerebellar degenerations: an update.
PMID:12044253
Systematic sequencing of cDNA clones using the transposon Tn5.
PMID:12034835
Dissection of a complex enhancer element: maintenance of keratinocyte specificity but loss of differentiation specificity.
PMID:12024040
SRp30c is a repressor of 3' splice site utilization.
PMID:12024014
Efficient recovery of centric heterochromatin P-element insertions in Drosophila melanogaster.
PMID:12019236
Intron-size constraint as a mutational mechanism in Rothmund-Thomson syndrome.
PMID:12016592
Genome-wide identification of tissue-specific enhancers in the Ciona tadpole.
PMID:12011440
Genetics in rheumatoid arthritis.
PMID:12010603
An element in the 3' untranslated region of human LINE-1 retrotransposon mRNA binds NXF1(TAP) and can function as a nuclear export element.
PMID:12003494
A high-density cytogenetic map of the Aegilops tauschii genome incorporating retrotransposons and defense-related genes: insights into cereal chromosome structure and function.
PMID:11999849
A novel interferon regulatory factor (IRF), IRF-10, has a unique role in immune defense and is induced by the v-Rel oncoprotein.
PMID:11997525
CFTR is a pattern recognition molecule that extracts Pseudomonas aeruginosa LPS from the outer membrane into epithelial cells and activates NF-kappa B translocation.
PMID:11997458
RePS: a sequence assembler that masks exact repeats identified from the shotgun data.
PMID:11997349
Large-scale protein annotation through gene ontology.
PMID:11997345
Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs.
PMID:11997339
Genes in a refined Smith-Magenis syndrome critical deletion interval on chromosome 17p11.2 and the syntenic region of the mouse.
PMID:11997338
Systematic evaluation of map quality: human chromosome 22.
PMID:11992248
Is 'big biology' a commercial enterprise?
PMID:11983050
Science, medicine, and the future: Bioinformatics.
PMID:11976246
Genomics and proteomics of allergic disease.
PMID:11972626
Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcription.
PMID:11972056
Evolution of the RNA polymerase II C-terminal domain.
PMID:11972039
Effective generation of transgenic pigs and mice by linker based sperm-mediated gene transfer.
PMID:11964188
A major predisposition locus for severe obesity, at 4p15-p14.
PMID:11957135
Analysis of a human brain transcriptome map.
PMID:11955288
Revised 14.7-cM locus for the hyperparathyroidism-jaw tumor syndrome gene, HRPT2.
PMID:11951180
Haemophilia A and haemophilia B: molecular insights.
PMID:11950963
Genes on human chromosome 19 show extreme divergence from the mouse orthologs and a high GC content.
PMID:11937628
BLAT--the BLAST-like alignment tool.
PMID:11932250
Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates.
PMID:11930003
Evolution of viruses by acquisition of genes that control nuclear functions in infected cells--an introduction.
PMID:11928989
Common deletion of SMAD4 in juvenile polyposis is a mutational hotspot.
PMID:11920286
An efficient algorithm for large-scale detection of protein families.
PMID:11917018
Comparative genomics and evolution of proteins involved in RNA metabolism.
PMID:11917006
An integrated physical and genetic map of the rice genome.
PMID:11910002
On the sequencing and assembly of the human genome.
PMID:11904395
Whole-genome disassembly.
PMID:11904394
Large-scale analysis of the human and mouse transcriptomes.
PMID:11904358
Telomeric and rDNA silencing in Saccharomyces cerevisiae are dependent on a nuclear NAD(+) salvage pathway.
PMID:11901108
Untranslated regions of mRNAs.
PMID:11897027
Linkage disequilibrium between the beta frequency of the human EEG and a GABAA receptor gene locus.
PMID:11891318
mRNA expression profiling of laser microbeam microdissected cells from slender embryonic structures.
PMID:11891179
Effects of glia maturation factor overexpression in primary astrocytes on MAP kinase activation, transcription factor activation, and neurotrophin secretion.
PMID:11885780
Genome complexity reduction for SNP genotyping analysis.
PMID:11880640
On the sequencing of the human genome.
PMID:11880605
Molecular biologist's guide to proteomics.
PMID:11875127
Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA).
PMID:11875039
Novel fluorescence labeling and high-throughput assay technologies for in vitro analysis of protein interactions.
PMID:11875038
Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling.
PMID:11875035
Computational comparison of human genomic sequence assemblies for a region of chromosome 4.
PMID:11875030
Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution.
PMID:11875026
The human ribosomal protein genes: sequencing and comparative analysis of 73 genes.
PMID:11875025
RNA-protein interactions that regulate pre-mRNA splicing.
PMID:11868989
Prevalence of somatic alterations in the colorectal cancer cell genome.
PMID:11867767
Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22.
PMID:11867739
Critical residues within the BTB domain of PLZF and Bcl-6 modulate interaction with corepressors.
PMID:11865059
Selection in the evolution of gene duplications.
PMID:11864370
RNase 8, a novel RNase A superfamily ribonuclease expressed uniquely in placenta.
PMID:11861908
A question of size: the eukaryotic proteome and the problems in defining it.
PMID:11861898
Comparative analysis of the human dystrophin and utrophin gene structures.
PMID:11861579
A microsatellite-based multilocus screen for the identification of local selective sweeps.
PMID:11861576
Through a genome, darkly: comparative analysis of plant chromosomal DNA.
PMID:11860213
Discovery of five conserved beta -defensin gene clusters using a computational search strategy.
PMID:11854508
Short-chain dehydrogenase/reductase (SDR) relationships: a large family with eight clusters common to human, animal, and plant genomes.
PMID:11847285
The first linkage disequilibrium (LD) maps: delineation of hot and cold blocks by diplotype analysis.
PMID:11842208
Complex regulation of the human gene for the Z-DNA binding protein DLM-1.
PMID:11842111
Genetic mapping of Y-chromosomal DNA markers in Pacific salmon.
PMID:11841186
Classical and molecular cytogenetics of the zebrafish, Danio rerio (Cyprinidae, Cypriniformes): an overview.
PMID:11841183
Gene mapping in fishes: a means to an end.
PMID:11841175
Mammalian selenoprotein in which selenocysteine (Sec) incorporation is supported by a new form of Sec insertion sequence element.
PMID:11839807
Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies.
PMID:11836651
Haemophilia A and haemophilia B: molecular insights.
PMID:11836440
High-throughput selection of retrovirus producer cell lines leads to markedly improved efficiency of germ line-transmissible insertions in zebra fish.
PMID:11836396
Current status of human chromosome 14.
PMID:11836355
Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis.
PMID:11835687
NIST physical standards for DNA-based medical testing.
PMID:11835524
Proteomic approaches to characterize protein modifications: new tools to study the effects of environmental exposures.
PMID:11834459
Localization of a susceptibility gene for common forms of stroke to 5q12.
PMID:11833004
V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit.
PMID:11827951
Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.
PMID:11827946
A web-based tool to retrieve human genome polymorphisms from public databases.
PMID:11825250
A model for data integration systems of biomedical data applied to online genetic databases.
PMID:11825233
Transplantation of target site specificity by swapping the endonuclease domains of two LINEs.
PMID:11823433
Limb-girdle muscular dystrophy type 2H associated with mutation in TRIM32, a putative E3-ubiquitin-ligase gene.
PMID:11822024
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach.
PMID:11818024
Bypass of heterology during strand transfer by Saccharomyces cerevisiae Rad51 protein.
PMID:11812836
Gene expression in the developing mouse retina by EST sequencing and microarray analysis.
PMID:11812828
Pharmacogenetics, pharmacogenomics and airway disease.
PMID:11806845
Prediction of unidentified human genes on the basis of sequence similarity to novel cDNAs from cynomolgus monkey brain.
PMID:11806829
C2A activates a cryptic Ca(2+)-triggered membrane penetration activity within the C2B domain of synaptotagmin I.
PMID:11805296
In silico chromosome staining: reconstruction of Giemsa bands from the whole human genome sequence.
PMID:11792839
High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor.
PMID:11792836
Score tests for association between traits and haplotypes when linkage phase is ambiguous.
PMID:11791212
A new approach to genome mapping and sequencing: slalom libraries.
PMID:11788732
Loss of N-glycolylneuraminic acid in humans: Mechanisms, consequences, and implications for hominid evolution.
PMID:11786991
2001 ASHG Presidential Address. On black boxes and storytellers: lessons learned in human genetics.
PMID:11781874
The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study.
PMID:11779845
Linker-mediated recombinational subcloning of large DNA fragments using yeast.
PMID:11779844
ARACHNE: a whole-genome shotgun assembler.
PMID:11779843
Genomic analysis of the olfactory receptor region of the mouse and human T-cell receptor alpha/delta loci.
PMID:11779833
Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms.
PMID:11779832
A comparative genomic analysis of two distant diptera, the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae.
PMID:11779831
Systematic identification of novel protein domain families associated with nuclear functions.
PMID:11779830
Genome-scale evolution: reconstructing gene orders in the ancestral species.
PMID:11779828
Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome.
PMID:11779826
A 117-kb microdeletion removing HOXD9-HOXD13 and EVX2 causes synpolydactyly.
PMID:11778160
Genetic, physical, and comparative map of the subtelomeric region of mouse Chromosome 4.
PMID:11773963
Pharmacogenetic tactics and strategies: implications for paediatrics.
PMID:11772149
Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome.
PMID:11756672
Evidence of positive selection acting at the human dopamine receptor D4 gene locus.
PMID:11756666
Jerky, a protein deficient in a mouse epilepsy model, is associated with translationally inactive mRNA in neurons.
PMID:11756500
Evidence for linkage of stature to chromosome 3p26 in a large U.K. Family data set ascertained for type 2 diabetes.
PMID:11753821
Molecular characteristics of non-small cell lung cancer.
PMID:11752463
Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo.
PMID:11752406
Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences.
PMID:11752336
DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs.
PMID:11752328
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.
PMID:11752319
The Pfam protein families database.
PMID:11752314
Recent improvements to the SMART domain-based sequence annotation resource.
PMID:11752305
The Gene Resource Locator: gene locus maps for transcriptome analysis.
PMID:11752299
HERVd: database of human endogenous retroviruses.
PMID:11752294
HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project.
PMID:11752282
euGenes: a eukaryote genome information system.
PMID:11752277
Annotating the human proteome: the Human Proteome Survey Database (HumanPSD) and an in-depth target database for G protein-coupled receptors (GPCR-PD) from Incyte Genomics.
PMID:11752275
The Ensembl genome database project.
PMID:11752248
DNA Data Bank of Japan (DDBJ) for genome scale research in life science.
PMID:11752245
The EMBL Nucleotide Sequence Database.
PMID:11752244
The Molecular Biology Database Collection: 2002 update.
PMID:11752241
Genetic counseling for congenital heart disease: new approaches for a new decade.
PMID:11743925
The SCAN domain of ZNF174 is a dimer.
PMID:11741982
Genetic variations in human G protein-coupled receptors: implications for drug therapy.
PMID:11741273
What use is the human genome for understanding the mouse?
PMID:11737939
What does a worm want with 20,000 genes?
PMID:11737938
Delivery of neurotrophic factors to the central nervous system: pharmacokinetic considerations.
PMID:11735609
Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22.
PMID:11731936
GeneLynx: a gene-centric portal to the human genome.
PMID:11731507
Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition.
PMID:11731496
Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion.
PMID:11731495
Identification of disease-specific genes in chronic pancreatitis using DNA array technology.
PMID:11729383
Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection.
PMID:11729162
Evidence for new alleles in the protein kinase adenosine monophosphate-activated gamma(3)-subunit gene associated with low glycogen content in pig skeletal muscle and improved meat quality.
PMID:11729159
DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA.
PMID:11726688
Evolutionary perspective on innate immune recognition.
PMID:11724812
Arrangements of macro- and microchromosomes in chicken cells.
PMID:11721954
Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells.
PMID:11721953
Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes.
PMID:11717436
Association between divergence and interspersed repeats in mammalian noncoding genomic DNA.
PMID:11717405
Establishment of a high throughput EST sequencing system using poly(A) tail-removed cDNA libraries and determination of 36,000 bovine ESTs.
PMID:11713328
REPuter: the manifold applications of repeat analysis on a genomic scale.
PMID:11713313
Non-coding RNAs: the architects of eukaryotic complexity.
PMID:11713189
The map problem: a comparison of genetic and sequence-based physical maps.
PMID:11706388
Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription.
PMID:11691937
Hypermutability at a poly(A/T) tract in the human germline.
PMID:11691928
GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags.
PMID:11691924
Spidey: a tool for mRNA-to-genomic alignments.
PMID:11691860
Automated construction of high-density comparative maps between rat, human, and mouse.
PMID:11691858
High-throughput variation detection and genotyping using microarrays.
PMID:11691856
A streamlined process to phenotypically profile heterologous cDNAs in parallel using yeast cell-based assays.
PMID:11691855
Determinants of CpG islands: expression in early embryo and isochore structure.
PMID:11691850
The contribution of exon-skipping events on chromosome 22 to protein coding diversity.
PMID:11691849
Pattern and timing of gene duplication in animal genomes.
PMID:11691848
Comparing vertebrate whole-genome shotgun reads to the human genome.
PMID:11691844
Methylation-mediated proviral silencing is associated with MeCP2 recruitment and localized histone H3 deacetylation.
PMID:11689684
Genetically increased angiotensin I-converting enzyme level and renal complications in the diabetic mouse.
PMID:11687636
Pharmacogenetics and pharmacogenomics.
PMID:11678777
A human nuclease specific for G4 DNA.
PMID:11675489
Open-system approaches to gene expression in the CNS.
PMID:11606615
Consequences of recombination rate variation on quantitative trait locus mapping studies. Simulations based on the Drosophila melanogaster genome.
PMID:11606535
Direct estimate of the mutation rate and the distribution of fitness effects in the yeast Saccharomyces cerevisiae.
PMID:11606524
Adaptins: the final recount.
PMID:11598180
The olfactory receptor family album.
PMID:11597337
Genomics analysis of genes expressed in maize endosperm identifies novel seed proteins and clarifies patterns of zein gene expression.
PMID:11595803
The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome.
PMID:11593022
Navigating the human transcriptome.
PMID:11592992
Protein-protein interaction panel using mouse full-length cDNAs.
PMID:11591653
High-resolution BAC-based map of the central portion of mouse chromosome 5.
PMID:11591652
Mouse BAC ends quality assessment and sequence analyses.
PMID:11591651
SSAHA: a fast search method for large DNA databases.
PMID:11591649
A comparative molecular analysis of developing mouse forelimbs and hindlimbs using serial analysis of gene expression (SAGE).
PMID:11591645
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome.
PMID:11591643
FOUNTAIN: a JAVA open-source package to assist large sequencing projects.
PMID:11591214
Molecular indexing of human genomic DNA.
PMID:11574697
A computational scan for U12-dependent introns in the human genome sequence.
PMID:11574683
Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution?
PMID:11574467
The trappist's approach to pathfinding: elucidating brain wiring using secretory-trap mutagenesis.
PMID:11574063
Abundant protein domains occur in proportion to proteome size.
PMID:11574058
A computational analysis of sequence features involved in recognition of short introns.
PMID:11572975
Global methylation profiling of lung cancer identifies novel methylated genes.
PMID:11571631
Comparing function and structure between entire proteomes.
PMID:11567088
Alu-mediated inactivation of the human CMP- N-acetylneuraminic acid hydroxylase gene.
PMID:11562455
Alu insertion polymorphisms for the study of human genomic diversity.
PMID:11560904
Genetic analysis of endocytosis in Caenorhabditis elegans: coelomocyte uptake defective mutants.
PMID:11560892
Dynamic modules and heterogeneity of function: a lesson from tyrosine kinase receptors in endothelial cells.
PMID:11559587
Impact of molecular medicine on neuropsychiatry: the clinician's perspective.
PMID:11559470
Matrix-induced fragmentation of P3'-N5' phosphoramidate-containing DNA: high-throughput MALDI-TOF analysis of genomic sequence polymorphisms.
PMID:11557819
DNA microarrays in medical practice.
PMID:11557712
Chemosensitivity prediction by transcriptional profiling.
PMID:11553813
Use of gene markers to guide antihypertensive therapy.
PMID:11551376
Assembly of the working draft of the human genome with GigAssembler.
PMID:11544197
Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data.
PMID:11544195
Cloning and characterization of a histone deacetylase, HDAC9.
PMID:11535832
HERV-K(OLD): ancestor sequences of the human endogenous retrovirus family HERV-K(HML-2).
PMID:11533155
The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
PMID:11532962
Mutation in Brca2 stimulates error-prone homology-directed repair of DNA double-strand breaks occurring between repeated sequences.
PMID:11532935
Nucleomorph genomes: much ado about practically nothing.
PMID:11532218
An immune defect causing dominant chronic mucocutaneous candidiasis and thyroid disease maps to chromosome 2p in a single family.
PMID:11517424
The interplay of biology and technology.
PMID:11517346
A draft annotation and overview of the human genome.
PMID:11516338
An Eulerian path approach to DNA fragment assembly.
PMID:11504945
Multiplex polymerase chain reaction (PCR) with color-tagged module-shuffling primers for comparing gene expression levels in various cells.
PMID:11504892
A genomewide scan for loci predisposing to type 2 diabetes in a U.K. population (the Diabetes UK Warren 2 Repository): analysis of 573 pedigrees provides independent replication of a susceptibility locus on chromosome 1q.
PMID:11484155
Gene expression profiling in human fetal liver and identification of tissue- and developmental-stage-specific genes through compiled expression profiles and efficient cloning of full-length cDNAs.
PMID:11483580
Sequence variation within the fragile X locus.
PMID:11483579
Molecular characterization of two natural hotspots in the Drosophila buzzatii genome induced by transposon insertions.
PMID:11483576
Treasures in the attic: rolling circle transposons discovered in eukaryotic genomes.
PMID:11481459
A statistical view of genome transcription?
PMID:11479687
Lower-than-expected linkage disequilibrium between tightly linked markers in humans suggests a role for gene conversion.
PMID:11473344
Supersensitivity to anandamide and enhanced endogenous cannabinoid signaling in mice lacking fatty acid amide hydrolase.
PMID:11470906
Molecular evolution of the homeodomain family of transcription factors.
PMID:11470884
Molecular characterization and gene content of breakpoint boundaries in patients with neurofibromatosis type 1 with 17q11.2 microdeletions.
PMID:11468690
Structure and evolution of the hAT transposon superfamily.
PMID:11454746
Species-specific organization of CpG island promoters at mammalian homologous genes.
PMID:11454739
Estrogen receptor interaction with estrogen response elements.
PMID:11452016
Obscurin, a giant sarcomeric Rho guanine nucleotide exchange factor protein involved in sarcomere assembly.
PMID:11448995
A sequence-based integrated map of chromosome 22.
PMID:11435412
Predicting splice variant from DNA chip expression data.
PMID:11435406
Estimating the efficacy and efficiency of cascade genetic screening.
PMID:11431707
Bases and spaces: resources on the web for accessing the draft human genome - II - after publication of the draft.
PMID:11423014
Endogenous retroviruses in the human genome sequence.
PMID:11423012
Evolution of mammalian genome organization inferred from comparative gene mapping.
PMID:11423011
The human olfactory receptor repertoire.
PMID:11423007
Siglecs in the immune system.
PMID:11412300
High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence.
PMID:11410841
Identification and prevention of a GC content bias in SAGE libraries.
PMID:11410683
Conserved vertebrate chromosome segments in the large salamander genome.
PMID:11404337
The arabidopsis serrate gene encodes a zinc-finger protein required for normal shoot development.
PMID:11402159
Mutations of the protocadherin gene PCDH15 cause Usher syndrome type 1F.
PMID:11398101
Towards a complete sequence of the human Y chromosome.
PMID:11387042
Characterizing glycosylation pathways.
PMID:11387039
Regulated transposition of a fish transposon in the mouse germ line.
PMID:11381141
The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes.
PMID:11381029
Segmental duplications: organization and impact within the current human genome project assembly.
PMID:11381028
Mitochondria and the quality of human gametes.
PMID:11359216
Computational inference of homologous gene structures in the human genome.
PMID:11337476
Science, medicine, and the future: Postgenomic technologies: hunting the genes for common disorders.
PMID:11325769
Goodbye to 'one by one' genetics.
PMID:11305933
Networking proteins in yeast.
PMID:11296274
Gene-diet interaction and plasma lipid response to dietary intervention.
PMID:11286641
Genome-scale compositional comparisons in eukaryotes.
PMID:11282969
Twin peaks: the draft human genome sequence.
PMID:11276423
Integration of cytogenetic landmarks into the draft sequence of the human genome.
PMID:11237021
Mining the draft human genome.
PMID:11236999