Four novel candidate causal variants for deficient homozygous haplotypes in Holstein cattle.
PMID:35361830
Variability in Global DNA Methylation Rate Across Tissues and Over Time in Sheep.
PMID:35360841
Significant Upregulation of HERV-K (HML-2) Transcription Levels in Human Lung Cancer and Cancer Cells.
PMID:35359739
A beginner's guide to manual curation of transposable elements.
PMID:35354491
Rethinking Protein Drug Design with Highly Accurate Structure Prediction of Anti-CRISPR Proteins.
PMID:35337108
In Vitro Analysis of Biological Activity of Circulating Cell-Free DNA Isolated from Blood Plasma of Schizophrenic Patients and Healthy Controls.
PMID:35328103
An Expanding Toolkit for Heterochromatin Repair Studies.
PMID:35328082
IMGT®Homo sapiens IG and TR Loci, Gene Order, CNV and Haplotypes: New Concepts as a Paradigm for Jawed Vertebrates Genome Assemblies.
PMID:35327572
Transposable Elements: Major Players in Shaping Genomic and Evolutionary Patterns.
PMID:35326499
TrkB Truncated Isoform Receptors as Transducers and Determinants of BDNF Functions.
PMID:35321093
Potential role of KRAB-ZFP binding and transcriptional states on DNA methylation of retroelements in human male germ cells.
PMID:35315771
Teaching cancer imaging in the era of precision medicine: Looking at the big picture.
PMID:35309874
The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes.
PMID:35302893
Short open reading frames (sORFs) and microproteins: an update on their identification and validation measures.
PMID:35300685
FDA-led consortium studies advance quality control of targeted next generation sequencing assays for precision oncology.
PMID:35282311
MER4 endogenous retrovirus correlated with better efficacy of anti-PD1/PD-L1 therapy in non-small cell lung cancer.
PMID:35277462
Principles for the design of multicellular engineered living systems.
PMID:35274072
Indicators of Successful Career Transitions from Physical Sciences and Engineering to Biomedical Research.
PMID:35273460
Inter-Species Rescue of Mutant Phenotype-The Standard for Genetic Analysis of Human Genetic Disorders in Drosophila melanogaster Model.
PMID:35269756
Transposable Elements and Human Diseases: Mechanisms and Implication in the Response to Environmental Pollutants.
PMID:35269693
Constitutive Heterochromatin in Eukaryotic Genomes: A Mine of Transposable Elements.
PMID:35269383
ALU repeat as potential molecular marker in the detection and prognosis of different cancer types: A systematic review.
PMID:35251637
A novel concept of human antiviral protection: It's all about RNA (Review).
PMID:35251616
Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells.
PMID:35243263
Transposable element landscapes in aging Drosophila.
PMID:35239675
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
PMID:35234489
Roles of transposable elements in the regulation of mammalian transcription.
PMID:35228718
A guide for the diagnosis of rare and undiagnosed disease: beyond the exome.
PMID:35220969
The Complexity of the Mammalian Transcriptome.
PMID:35220563
Expanding Gene-Editing Potential in Crop Improvement with Pangenomes.
PMID:35216392
Characterizing mobile element insertions in 5675 genomes.
PMID:35212372
Low Expression of ZNF154 is Related to Poor Prognosis in Gastric Cancer.
PMID:35210862
Insights into the Association Between QSER1 and M2 Macrophages and Remarkable Malignancy Characteristics in Hepatocellular Carcinoma.
PMID:35210841
To Be or Not to Be Mesophilic, That Is the Question for Aeromonas salmonicida.
PMID:35208695
The Ribosomal Protein RpL22 Interacts In Vitro with 5'-UTR Sequences Found in Some Drosophila melanogaster Transposons.
PMID:35205350
Splicing Variants, Protein-Protein Interactions, and Drug Targeting in Hutchinson-Gilford Progeria Syndrome and Small Cell Lung Cancer.
PMID:35205210
Discordant Genome Assemblies Drastically Alter the Interpretation of Single-Cell RNA Sequencing Data Which Can Be Mitigated by a Novel Integration Method.
PMID:35203259
Cryo-EM advances in RNA structure determination.
PMID:35197441
[Web-based gene expression analysis-paving the way to decode healthy and diseased ocular tissue].
PMID:35194679
Functional noncoding SNPs in human endothelial cells fine-map vascular trait associations.
PMID:35193936
An Alu insertion map of the Indian population: identification and analysis in 1021 genomes of the IndiGen project.
PMID:35178516
Particulate matter-induced hypomethylation of Alu and LINE1 in normal human bronchial epithelial cells and epidermal keratinocytes.
PMID:35172897
MxB inhibits long interspersed element type 1 retrotransposition.
PMID:35171907
Machine learning for multi-omics data integration in cancer.
PMID:35169688
The Absence of Retroelement Activity Is Characteristic for Childhood Acute Leukemias and Adult Acute Lymphoblastic Leukemia.
PMID:35163677
A Systematic Review of Expression and Immunogenicity of Human Endogenous Retroviral Proteins in Cancer and Discussion of Therapeutic Approaches.
PMID:35163254
Polycystic Ovary Syndrome: An Evolutionary Adaptation to Lifestyle and the Environment.
PMID:35162359
Disparities in Lung Cancer: miRNA Isoform Characterization in Lung Adenocarcinoma.
PMID:35159038
Bitter taste receptors: Genes, evolution and health.
PMID:35154779
Genetic variation of pharmacogenomic VIP variants in the Chinese Li population: an updated research.
PMID:35146537
Emerging roles of circular RNAs in retinal diseases.
PMID:35142661
Analysis of Pathogenic Pseudoexons Reveals Novel Mechanisms Driving Cryptic Splicing.
PMID:35140743
Functional Precision Medicine: Putting Drugs on Patient Cancer Cells and Seeing What Happens.
PMID:35140175
The mouse resource at National Resource Center for Mutant Mice.
PMID:35138443
WAFNRLTG: A Novel Model for Predicting LncRNA Target Genes Based on Weighted Average Fusion Network Representation Learning Method.
PMID:35127729
Translational Informatics for Natural Products as Antidepressant Agents.
PMID:35127696
Mouse genomic and cellular annotations.
PMID:35124726
Exposome and Skin: Part 1. Bibliometric Analysis and Review of the Impact of Exposome Approaches on Dermatology.
PMID:35112325
Highly sensitive diagnostic method for colorectal cancer using the ratio of free DNA fragments in serum.
PMID:35111495
ATF7ip Targets Transposable Elements for H3K9me3 Deposition to Modify CD8+ T Cell Effector and Memory Responses.
PMID:35110421
Genomic deciphering of sex determination and unique immune system of a potential model species rare minnow (Gobiocypris rarus).
PMID:35108042
Four groups of type 2 diabetes contribute to the etiological and clinical heterogeneity in newly diagnosed individuals: An IMI DIRECT study.
PMID:35106505
LncRNA Tug1 maintains blood-testis barrier integrity by modulating Ccl2 expression in high-fat diet mice.
PMID:35103851
Long Noncoding RNA Mediated Regulation in Human Embryogenesis, Pluripotency, and Reproduction.
PMID:35103065
Context dependency of nucleotide probabilities and variants in human DNA.
PMID:35100973
Analysis of epigenetic features characteristic of L1 loci expressed in human cells.
PMID:35100410
Caenorhabditis elegans transposable elements harbor diverse transcription factor DNA-binding sites.
PMID:35088854
Shaping the Innate Immune Response Through Post-Transcriptional Regulation of Gene Expression Mediated by RNA-Binding Proteins.
PMID:35087521
Exploring clinical implications and role of non-coding RNAs in lung carcinogenesis.
PMID:35076850
A simple guide to de novo transcriptome assembly and annotation.
PMID:35076693
HERV-W Envelope Triggers Abnormal Dopaminergic Neuron Process through DRD2/PP2A/AKT1/GSK3 for Schizophrenia Risk.
PMID:35062349
Endogenous Retroviruses Provide Protection Against Vaginal HSV-2 Disease.
PMID:35058919
Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics.
PMID:35054423
Molecular Mechanisms in Pentanucleotide Repeat Diseases.
PMID:35053321
Recent Advances in RNA Therapy and Its Carriers to Treat the Single-Gene Neurological Disorders.
PMID:35052837
Genome-wide perturbations of Alu expression and Alu-associated post-transcriptional regulations distinguish oligodendroglioma from other gliomas.
PMID:35042936
Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life.
PMID:35042810
Darwinian genomics and diversity in the tree of life.
PMID:35042807
Threatened Species Initiative: Empowering conservation action using genomic resources.
PMID:35042806
Standards recommendations for the Earth BioGenome Project.
PMID:35042802
Why sequence all eukaryotes?
PMID:35042801
LINE1 are spliced in non-canonical transcript variants to regulate T cell quiescence and exhaustion.
PMID:35039641
Core promoter mutation contributes to abnormal gene expression in bladder cancer.
PMID:35033028
GC content of plant genes is linked to past gene duplications.
PMID:35025913
Identification of human gene research articles with wrongly identified nucleotide sequences.
PMID:35022248
Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome.
PMID:35022065
Automated prediction of the clinical impact of structural copy number variations.
PMID:35017614
Canonical WNT signaling-dependent gating of MYC requires a noncanonical CTCF function at a distal binding site.
PMID:35017527
Mechanism for inverted-repeat recombination induced by a replication fork barrier.
PMID:35013185
PBRM1 Inactivation Promotes Upregulation of Human Endogenous Retroviruses in a HIF-Dependent Manner.
PMID:35013001
Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species.
PMID:35007277
The evolution of knowledge on genes associated with human diseases.
PMID:35005554
Cohort Profile: The Alliance for Maternal and Newborn Health Improvement (AMANHI) biobanking study.
PMID:34999881
The characteristics of early-stage research into human genes are substantially different from subsequent research.
PMID:34990452
Cure and Long-Term Remission Strategies.
PMID:34985678
Assessing reproducibility of inherited variants detected with short-read whole genome sequencing.
PMID:34980216
Firing up Cold Tumors-Targeting the Epigenetic Machinery to Enhance Cancer Immunotherapy.
PMID:34968298
Epigenetic Regulation of the Non-Coding Genome: Opportunities for Immuno-Oncology.
PMID:34968293
EZH2 suppresses endogenous retroviruses and an interferon response in cancers.
PMID:34966479
Structure, Activity, and Function of SETMAR Protein Lysine Methyltransferase.
PMID:34947873
Chromatography-Free Purification Strategies for Large Biological Macromolecular Complexes Involving Fractionated PEG Precipitation and Density Gradients.
PMID:34947821
Endogenous Retroviral Elements in Human Development and Central Nervous System Embryonal Tumors.
PMID:34945804
Expression of Endogenous Retroviral RNA in Prostate Tumors has Prognostic Value and Shows Differences among Americans of African Versus European/Middle Eastern Ancestry.
PMID:34944967
Methylation Markers in Cutaneous Melanoma: Unravelling the Potential Utility of Their Tracking by Liquid Biopsy.
PMID:34944843
Reverse Genetic Screen for Deleterious Recessive Variants in the Local Simmental Cattle Population of Switzerland.
PMID:34944310
Transgenic Model Systems Have Revolutionized the Study of Disease.
PMID:34941457
Long-range promoter-enhancer contacts are conserved during evolution and contribute to gene expression robustness.
PMID:34930799
Molecular Diagnostics for Ocular Infectious Diseases: LXXVIII Edward Jackson Memorial Lecture.
PMID:34921773
Human endogenous retroviruses (HERV) and non-HERV viruses incorporated into the human genome and their role in the development of autoimmune diseases.
PMID:34917914
Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success.
PMID:34915862
Gauging the role and impact of drug interactions and repurposing in neurodegenerative disorders.
PMID:34909657
The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites.
PMID:34908915
Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era.
PMID:34901902
A Method for Localizing Non-Reference Sequences to the Human Genome.
PMID:34890159
Targeted insertion of large genetic payloads using cas directed LINE-1 reverse transcriptase.
PMID:34880381
Transcription factor network analysis based on single cell RNA-seq identifies that Trichostatin-a reverses docetaxel resistance in prostate Cancer.
PMID:34879849
DNA Profiling in Forensic Science: A Review.
PMID:34877570
Human endogenous retroviruses in development and disease.
PMID:34849202
Chronic cortisol differentially impacts stem cell-derived astrocytes from major depressive disorder patients.
PMID:34848679
Advances in Non-Coding RNA Sequencing.
PMID:34842804
DNA sequencing: an overview of solid-state and biological nanopore-based methods.
PMID:34840616
From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo.
PMID:34837040
Pathophysiological role of growth differentiation factor 15 (GDF15) in obesity, cancer, and cachexia.
PMID:34836750
Stochastic Effects in Retrotransposon Dynamics Revealed by Modeling under Competition for Cellular Resources.
PMID:34833085
Diversity-Oriented Synthesis: Amino Acetophenones as Building Blocks for the Synthesis of Natural Product Analogs.
PMID:34832909
The Evolutionary Volte-Face of Transposable Elements: From Harmful Jumping Genes to Major Drivers of Genetic Innovation.
PMID:34831175
Evidence of G-Protein-Coupled Receptors (GPCR) in the Parasitic Protozoa Plasmodium falciparum-Sensing the Host Environment and Coupling within Its Molecular Signaling Toolkit.
PMID:34830263
Role of Non-Coding RNAs in Post-Transcriptional Regulation of Lung Diseases.
PMID:34819948
Emerging roles for endogenous retroviruses in immune epigenetic regulation.
PMID:34816452
Bringing precision oncology to cellular resolution with single-cell genomics.
PMID:34807338
Alu insertion variants alter gene transcript levels.
PMID:34799402
Inhibitor of growth protein 3 epigenetically silences endogenous retroviral elements and prevents innate immune activation.
PMID:34791430
Cumulative Roles for Epstein-Barr Virus, Human Endogenous Retroviruses, and Human Herpes Virus-6 in Driving an Inflammatory Cascade Underlying MS Pathogenesis.
PMID:34790199
Characterization of DNA methylation and promoter activity of long terminal repeat elements of feline endogenous retrovirus RDRS C2a.
PMID:34787790
Locus-specific expression of transposable elements in single cells with CELLO-seq.
PMID:34782740
Adaptive homeostasis and the p53 isoform network.
PMID:34779563
Targeting Phosphatases and Kinases: How to Checkmate Cancer.
PMID:34778245
Accurate long-read de novo assembly evaluation with Inspector.
PMID:34775997
Mutagenesis of human genomes by endogenous mobile elements on a population scale.
PMID:34772701
Histone Modification in NSCLC: Molecular Mechanisms and Therapeutic Targets.
PMID:34769131
Recent development of nucleic acid nanosensors to detect sequence-specific binding interactions: From metal ions, small molecules to proteins and pathogens.
PMID:34766041
AI applications in functional genomics.
PMID:34765093
Computational modeling of RNase, antisense ORF0 RNA, and intracellular compartmentation and their impact on the life cycle of the line retrotransposon.
PMID:34765087
Perfect and imperfect views of ultraconserved sequences.
PMID:34764456
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data.
PMID:34755848
Roles and mechanisms of exosomal non-coding RNAs in human health and diseases.
PMID:34753929
The transposable element-rich genome of the cereal pest Sitophilus oryzae.
PMID:34749730
Post-transcriptional regulation in spermatogenesis: all RNA pathways lead to healthy sperm.
PMID:34748024
The Genomic Organization of the LILR Region Remained Largely Conserved Throughout Primate Evolution: Implications for Health And Disease.
PMID:34737739
Non-Coding RNAs in the Etiology and Control of Major and Neglected Human Tropical Diseases.
PMID:34737736
'Omics' of suicidal behaviour: A path to personalised psychiatry.
PMID:34733641
BST2 Suppresses LINE-1 Retrotransposition by Reducing the Promoter Activity of LINE-1 5' UTR.
PMID:34730388
An integrative analysis of genomic and exposomic data for complex traits and phenotypic prediction.
PMID:34728654
An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity.
PMID:34727520
Chromatin accessibility and gene expression during adipocyte differentiation identify context-dependent effects at cardiometabolic GWAS loci.
PMID:34699533
Comparative Analysis of Plasmodium falciparum Genotyping via SNP Detection, Microsatellite Profiling, and Whole-Genome Sequencing.
PMID:34694871
Transposable Element Dynamics and Regulation during Zygotic Genome Activation in Mammalian Embryos and Embryonic Stem Cell Model Systems.
PMID:34691189
Genetic Regulation of Immunoglobulin G Glycosylation.
PMID:34687013
Integration of Epigenetic Mechanisms into Non-Genotoxic Carcinogenicity Hazard Assessment: Focus on DNA Methylation and Histone Modifications.
PMID:34681626
Implications of Antigen Selection on T Cell-Based Immunotherapy.
PMID:34681217
Factors Regulating the Activity of LINE1 Retrotransposons.
PMID:34680956
The Quest for Genes Involved in Adaptation to Climate Change in Ruminant Livestock.
PMID:34679854
Embryonic LTR retrotransposons supply promoter modules to somatic tissues.
PMID:34675070
Alu RNA and their roles in human disease states.
PMID:34672903
Pathogenic tau accelerates aging-associated activation of transposable elements in the mouse central nervous system.
PMID:34670118
Comprehensive molecular characterization of lung tumors implicates AKT and MYC signaling in adenocarcinoma to squamous cell transdifferentiation.
PMID:34656143
MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells.
PMID:34650118
Low-bias ncRNA libraries using ordered two-template relay: Serial template jumping by a modified retroelement reverse transcriptase.
PMID:34649994
Complex Transposon Insertion as a Novel Cause of Pompe Disease.
PMID:34639227
Phospho-Tau and Chromatin Landscapes in Early and Late Alzheimer's Disease.
PMID:34638632
Emerging Functions for snoRNAs and snoRNA-Derived Fragments.
PMID:34638533
RNA Therapeutics - Research and Clinical Advancements.
PMID:34631795
Genome-wide analysis of DNA methylation in 106 schizophrenia family trios in Han Chinese.
PMID:34628353
Telomere-specific chromatin capture using a pyrrole-imidazole polyamide probe for the identification of proteins and non-coding RNAs.
PMID:34627342
High-quality reference genome of Fasciola gigantica: Insights into the genomic signatures of transposon-mediated evolution and specific parasitic adaption in tropical regions.
PMID:34610021
Regulated splicing of large exons is linked to phase-separation of vertebrate transcription factors.
PMID:34605568
Easy and fast PCR-based protocol allows characterization of breakpoints resulting from Alu/Alu-mediated genomic rearrangements.
PMID:34596355
Evolutionary genetics and acclimatization in nephrology.
PMID:34584272
Androgen-Binding Protein (Abp) Evolutionary History: Has Positive Selection Caused Fixation of Different Paralogs in Different Taxa of the Genus Mus?
PMID:34581786
Does the Zinc Finger Antiviral Protein (ZAP) Shape the Evolution of Herpesvirus Genomes?
PMID:34578438
Identification of Abundant and Functional dodecaRNAs (doRNAs) Derived from Ribosomal RNA.
PMID:34575920
The Sound of Silence: How Silenced Chromatin Orchestrates the Repair of Double-Strand Breaks.
PMID:34573397
Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19.
PMID:34572502
Phosphorylation-Mediated Molecular Pathway Changes in Human Pituitary Neuroendocrine Tumors Identified by Quantitative Phosphoproteomics.
PMID:34571875
Bioinformatics and Machine Learning Approaches to Understand the Regulation of Mobile Genetic Elements.
PMID:34571773
A broad analysis of splicing regulation in yeast using a large library of synthetic introns.
PMID:34570750
Detection of Alu Exonization Events in Human Frontal Cortex From RNA-Seq Data.
PMID:34568430
Editorial: Pathogens, Pathobionts, and Autoimmunity.
PMID:34567014
The Interplay Among HIV, LINE-1, and the Interferon Signaling System.
PMID:34566998
Sex, rurality and socioeconomical status in Spanish centennial population (2017).
PMID:34565717
Proteomes Are of Proteoforms: Embracing the Complexity.
PMID:34564541
Transposon-triggered innate immune response confers cancer resistance to the blind mole rat.
PMID:34556881
Pharmaceutical drug development: high drug prices and the hidden role of public funding.
PMID:34554467
The function of twister ribozyme variants in non-LTR retrotransposition in Schistosoma mansoni.
PMID:34551436
Data Management and Modeling in Plant Biology.
PMID:34539712
Characterization of full-length LINE-1 insertions in 154 genomes.
PMID:34534648
International strategy in cancer epidemiology: Japan's involvement in global projects and future role.
PMID:34532599
DNA double-strand break repair in cancer: A path to achieving precision medicine.
PMID:34507781
Possible Roles of tRNA Fragments, as New Regulatory ncRNAs, in the Pathogenesis of Rheumatoid Arthritis.
PMID:34502386
Proximity labeling and other novel mass spectrometric approaches for spatiotemporal protein dynamics.
PMID:34496693
Endogenous Feline Leukemia Virus (FeLV) siRNA Transcription May Interfere with Exogenous FeLV Infection.
PMID:34495702
A functional genomics pipeline identifies pleiotropy and cross-tissue effects within obesity-associated GWAS loci.
PMID:34489471
Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and Accuracy.
PMID:34485311
Systematic Comparison of the Performances of De Novo Genome Assemblers for Oxford Nanopore Technology Reads From Piroplasm.
PMID:34485177
Shared properties and singularities of exoribonuclease-resistant RNAs in viruses.
PMID:34471487
Alpha Satellite Insertion Close to an Ancestral Centromeric Region.
PMID:34464971
The Propagation of Racial Disparities in Cardiovascular Genomics Research.
PMID:34461749
DNA methyltransferase inhibitors combination therapy for the treatment of solid tumor: mechanism and clinical application.
PMID:34452630
Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAs.
PMID:34445436
The Role of lncRNA in the Development of Tumors, including Breast Cancer.
PMID:34445129
Suggested Absence of Horizontal Transfer of Retrotransposons between Humans and Domestic Mammal Species.
PMID:34440397
Transposons-Based Clonal Diversity in Trematode Involves Parts of CR1 (LINE) in Eu- and Heterochromatin.
PMID:34440303
The Key Lnc (RNA)s in Cardiac and Skeletal Muscle Development, Regeneration, and Disease.
PMID:34436226
An Ancestral Retrovirus Envelope Protein Regulates Persistent Gammaherpesvirus Lifecycles.
PMID:34434177
Cohort Profile: The Alliance for Maternal and Newborn Health Improvement (AMANHI) biobanking study.
PMID:34426827
Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9.
PMID:34425899
Study of lncRNA TPA in Promoting Invasion and Metastasis of Breast Cancer Mediated by TGF-β Signaling Pathway.
PMID:34422811
Appropriate Clinical Genetic Testing of Hemochromatosis Type 2-4, Including Ferroportin Disease.
PMID:34413666
One-carbon metabolism and global DNA methylation in mothers of individuals with Down syndrome.
PMID:34410622
The Oldest Co-opted gag Gene of a Human Endogenous Retrovirus Shows Placenta-Specific Expression and Is Upregulated in Diffuse Large B-Cell Lymphomas.
PMID:34410386
A comprehensive analysis of gorilla-specific LINE-1 retrotransposons.
PMID:34406591
Segmental duplication as potential biomarkers for non-invasive prenatal testing of aneuploidies.
PMID:34391089
A strategy for building and using a human reference pangenome.
PMID:34386196
Expression of a human cDNA in moss results in spliced mRNAs and fragmentary protein isoforms.
PMID:34385580
DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regions.
PMID:34383754
Exploring tissue architecture using spatial transcriptomics.
PMID:34381231
Genome-wide mapping of binding sites of the transposase-derived SETMAR protein in the human genome.
PMID:34377368
Viral Suppression of RIPK1-Mediated Signaling.
PMID:34372694
JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.
PMID:34370400
Application of NGS Technology in Understanding the Pathology of Autoimmune Diseases.
PMID:34362117
Signaling Pathways Regulated by UBR Box-Containing E3 Ligases.
PMID:34361089
Genomic Mosaicism Formed by Somatic Variation in the Aging and Diseased Brain.
PMID:34356087
Transposable elements shape the evolution of mammalian development.
PMID:34354263
Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
PMID:34337360
Current diagnostic approaches to detect two important betacoronaviruses: Middle East respiratory syndrome coronavirus (MERS-CoV) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
PMID:34333398
Replication protein A: a multifunctional protein with roles in DNA replication, repair and beyond.
PMID:34316690
Haplotypic Associations and Differentiation of MHC Class II Polymorphic Alu Insertions at Five Loci With HLA-DRB1 Alleles in 12 Minority Ethnic Populations in China.
PMID:34305999
Role of long interspersed nuclear element-1 in the regulation of chromatin landscapes and genome dynamics.
PMID:34304633
Adenosine-to-inosine Alu RNA editing controls the stability of the pro-inflammatory long noncoding RNA NEAT1 in atherosclerotic cardiovascular disease.
PMID:34302813
Expanding studies of chromosome structure and function in the era of T2T genomics.
PMID:34302168
Activation of Endogenous Retrovirus, Brain Infections and Environmental Insults in Neurodegeneration and Alzheimer's Disease.
PMID:34298881
Discovery of genomic variation across a generation.
PMID:34296264
New Genes Born-In or Invading Vertebrate Genomes.
PMID:34295903
Highly accurate protein structure prediction for the human proteome.
PMID:34293799
Perturbed DNA methylation by Gadd45b induces chromatin disorganization, DNA strand breaks and dopaminergic neuron death.
PMID:34278264
A pooled CRISPR/AsCpf1 screen using paired gRNAs to induce genomic deletions in Chinese hamster ovary cells.
PMID:34277363
Folate Deficiency Triggers the Abnormal Segregation of a Region With Large Cluster of CG-Rich Trinucleotide Repeats on Human Chromosome 2.
PMID:34276797
Impact of Genetic Variation in Gene Regulatory Sequences: A Population Genomics Perspective.
PMID:34276769
Distinct Retrotransposon Evolution Profile in the Genome of Rabbit (Oryctolagus cuniculus).
PMID:34270728
The International Human Genome Project.
PMID:34264324
Metagenomics: a path to understanding the gut microbiome.
PMID:34259891
Levenshtein Distance, Sequence Comparison and Biological Database Search.
PMID:34257466
Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs.
PMID:34253730
A direct capture method for purification and detection of viral nucleic acid enables epidemiological surveillance of SARS-CoV-2.
PMID:34252764
Markov chain Monte Carlo Gibbs sampler approach for estimating haplotype frequencies among multiple malaria infected human blood samples.
PMID:34246273
Global mapping of cancers: The Cancer Genome Atlas and beyond.
PMID:34245122
Single-molecule, full-length transcript isoform sequencing reveals disease-associated RNA isoforms in cardiomyocytes.
PMID:34244519
Molecular mechanisms of pulmonary carcinogenesis by polycyclic aromatic hydrocarbons (PAHs): Implications for human lung cancer.
PMID:34242741
Multiscale modeling of genome organization with maximum entropy optimization.
PMID:34241389
Binding patterns of RNA-binding proteins to repeat-derived RNA sequences reveal putative functional RNA elements.
PMID:34235430
Differential efficacies of Cas nucleases on microsatellites involved in human disorders and associated off-target mutations.
PMID:34233005
Cognate restriction of transposition by piggyBac-like proteins.
PMID:34232995
The RNA editing enzyme ADAR2 restricts L1 mobility.
PMID:34224323
Nanopore Technology and Its Applications in Gene Sequencing.
PMID:34208844
The Structural, Functional and Evolutionary Impact of Transposable Elements in Eukaryotes.
PMID:34203645
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome.
PMID:34187812
Evolution of mouse circadian enhancers from transposable elements.
PMID:34187518
Expression of Retroelements in Mammalian Gametes and Embryos.
PMID:34182464
Lack of relationship between Alu repetitive elements in angiotensin converting enzyme and the severity of diabetic retinopathy.
PMID:34177375
Man is a "Rope" Stretched Between Virosphere and Humanoid Robots: On the Urgent Need of an Ethical Code for Ecosystem Survival.
PMID:34177285
A perspective on the molecular simulation of DNA from structural and functional aspects.
PMID:34168783
Debugging: putting the synthetic yeast chromosome to work.
PMID:34168782
Genetics of white color and iridophoroma in "Lemon Frost" leopard geckos.
PMID:34166378
Genome-wide binding analysis of 195 DNA binding proteins reveals "reservoir" promoters and human specific SVA-repeat family regulation.
PMID:34166368
Unraveling Genome Evolution Throughout Visual Analysis: The XCout Portal.
PMID:34163150
Haplotype diversity and sequence heterogeneity of human telomeres.
PMID:34162698
Viewing Victor McKusick's legacy through the lens of his bibliography.
PMID:34159717
History of the methodology of disease gene identification.
PMID:34159713
Endogenous reverse transcriptase and RNase H-mediated antiviral mechanism in embryonic stem cells.
PMID:34158624
Mobile element insertions and associated structural variants in longitudinal breast cancer samples.
PMID:34158539
Comprehensive identification of transposable element insertions using multiple sequencing technologies.
PMID:34158502
Sequence determinants, function, and evolution of CpG islands.
PMID:34156435
Hepatocellular adenoma in men: A nationwide assessment of pathology and correlation with clinical course.
PMID:34155783
SMARCB1 deletion in atypical teratoid rhabdoid tumors results in human endogenous retrovirus K (HML-2) expression.
PMID:34145313
Molecular mechanisms underlying nucleotide repeat expansion disorders.
PMID:34140671
Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA.
PMID:34140313
Convergent and distributed effects of the 3q29 deletion on the human neural transcriptome.
PMID:34131099
Paternal MTHFR deficiency leads to hypomethylation of young retrotransposons and reproductive decline across two successive generations.
PMID:34128976
Haplotype Shuffling and Dimorphic Transposable Elements in the Human Extended Major Histocompatibility Complex Class II Region.
PMID:34122517
UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction.
PMID:34122513
Cas9 targeted enrichment of mobile elements using nanopore sequencing.
PMID:34117247
Interphase Chromosomes in Replicative Senescence: Chromosome Positioning as a Senescence Biomarker and the Lack of Nuclear Motor-Driven Chromosome Repositioning in Senescent Cells.
PMID:34113611
Specialty Grand Challenge for Molecular Signalling and Pathways in Molecular Neuroscience.
PMID:34108865
RNA m6A modification orchestrates a LINE-1-host interaction that facilitates retrotransposition and contributes to long gene vulnerability.
PMID:34108665
The pseudogene PRELID1P6 promotes glioma progression via the hnHNPH1-Akt/mTOR axis.
PMID:34108621
The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis.
PMID:34108012
LINE-1 transcription in round spermatids is associated with accretion of 5-carboxylcytosine in their open reading frames.
PMID:34099857
Sequencing and comparative genome analysis of three Indians.
PMID:34086082
The Rhox gene cluster suppresses germline LINE1 transposition.
PMID:34083437
Losing DNA methylation at repetitive elements and breaking bad.
PMID:34082816
Genetics, its role in preventing the pandemic of coronary artery disease.
PMID:34080689
Infection by Diverse HIV-1 Subtypes Leads to Different Elevations in HERV-K Transcriptional Levels in Human T Cell Lines.
PMID:34079529
Human Endogenous Retrovirus as Therapeutic Targets in Neurologic Disease.
PMID:34073730
Alternate Roles of Sox Transcription Factors beyond Transcription Initiation.
PMID:34073089
Triazole-Modified Nucleic Acids for the Application in Bioorganic and Medicinal Chemistry.
PMID:34073038
THAP9 Transposase Cleaves DNA via Conserved Acidic Residues in an RNaseH-Like Domain.
PMID:34072453
Malaria in the 'Omics Era'.
PMID:34070769
Widespread Exaptation of L1 Transposons for Transcription Factor Binding in Breast Cancer.
PMID:34070697
Implementing Pharmacogenomics Testing: Single Center Experience at Arkansas Children's Hospital.
PMID:34064668
Proteomics, Personalized Medicine and Cancer.
PMID:34063807
Ancient Adversary - HERV-K (HML-2) in Cancer.
PMID:34055625
IgG and IgA autoantibodies against L1 ORF1p expressed in granulocytes correlate with granulocyte consumption and disease activity in pediatric systemic lupus erythematosus.
PMID:34051843
Emerging Classes of Small Non-Coding RNAs With Potential Implications in Diabetes and Associated Metabolic Disorders.
PMID:34040585
Genetic effects on liver chromatin accessibility identify disease regulatory variants.
PMID:34038741
Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments.
PMID:34029068
Overexpression of Endogenous Retroviruses and Malignancy Markers in Neuroblastoma Cell Lines by Medium-Induced Microenvironmental Changes.
PMID:34026614
Organ-, sex- and age-dependent patterns of endogenous L1 mRNA expression at a single locus resolution.
PMID:34023901
The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions.
PMID:34021759
Common DNA methylation dynamics in endometriod adenocarcinoma and glioblastoma suggest universal epigenomic alterations in tumorigenesis.
PMID:34021236
Chromatin-associated MRN complex protects highly transcribing genes from genomic instability.
PMID:34020942
Antibodies against human endogenous retrovirus K102 envelope activate neutrophils in systemic lupus erythematosus.
PMID:34019642
Structural analysis of the SRP Alu domain from Plasmodium falciparum reveals a non-canonical open conformation.
PMID:34017052
Placental outcomes of phthalate exposure.
PMID:34015474
Roles of long non‑coding RNA in osteoarthritis (Review).
PMID:34013375
MIR-NATs repress MAPT translation and aid proteostasis in neurodegeneration.
PMID:34012113
Unique evolutionary trajectories of breast cancers with distinct genomic and spatial heterogeneity.
PMID:34011996
Transcriptome Analyses Implicate Endogenous Retroviruses Involved in the Host Antiviral Immune System through the Interferon Pathway.
PMID:34009516
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation.
PMID:34006179
Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes.
PMID:34002224
Identification of Differentially Expressed Human Endogenous Retrovirus Families in Human Leukemia and Lymphoma Cell Lines and Stem Cells.
PMID:33996550
Enabling Genomics Pipelines in Commodity Personal Computers With Flash Storage.
PMID:33995473
DoChaP: the domain change presenter.
PMID:33988713
Dissecting polygenic signals from genome-wide association studies on human behaviour.
PMID:33986517
Evolution of default genetic control mechanisms.
PMID:33984070
High throughput quantification of short nucleic acid samples by capillary electrophoresis with automated data processing.
PMID:33979658
Overexpression of ZNF460 predicts worse survival and promotes metastasis through JAK2/STAT3 signaling pathway in patient with colon cancer.
PMID:33976729
The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality.
PMID:33973013
Endogenous retroviruses in the origins and treatment of cancer.
PMID:33971937
A Population-Specific Major Allele Reference Genome From The United Arab Emirates Population.
PMID:33968136
Toward Genome-Based Selection in Asian Seabass: What Can We Learn From Other Food Fishes and Farm Animals?
PMID:33968125
A Human Endogenous Bornavirus-Like Nucleoprotein Encodes a Mitochondrial Protein Associated with Cell Viability.
PMID:33952640
Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.
PMID:33946766
Adhesion GPR123 is an indicator for recurrence and prognosis in bladder cancer.
PMID:33945147
Targeting DDX3X Triggers Antitumor Immunity via a dsRNA-Mediated Tumor-Intrinsic Type I Interferon Response.
PMID:33941613
The genomic history of the Aegean palatial civilizations.
PMID:33930288
The Need for a Human Pangenome Reference Sequence.
PMID:33929893
The Startling Role of Mismatch Repair in Trinucleotide Repeat Expansions.
PMID:33925919
The "Genomic Code": DNA Pervasively Moulds Chromatin Structures Leaving no Room for "Junk".
PMID:33924668
Genetic Diversity and Population Structures in Chinese Miniature Pigs Revealed by SINE Retrotransposon Insertion Polymorphisms, a New Type of Genetic Markers.
PMID:33921134
In Vivo and In Vitro Assays Evaluating the Biological Activity of Taurine, Glucose and Energetic Beverages.
PMID:33920365
The Involvement of Long Non-Coding RNAs in Bone.
PMID:33920083
Sequence, Chromatin and Evolution of Satellite DNA.
PMID:33919233
Human Endogenous Retroviruses in Glioblastoma Multiforme.
PMID:33917421
Behind the Scenes of the Human Breast Cell Atlas Project.
PMID:33914224
Towards complete and error-free genome assemblies of all vertebrate species.
PMID:33911273
Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome.
PMID:33911077
Virus-derived variation in diverse human genomes.
PMID:33901175
MicroRNAs as theranostic markers in cardiac allograft transplantation: from murine models to clinical practice.
PMID:33897899
Sensing of transposable elements by the antiviral innate immune system.
PMID:33888553
Evolution of genetic networks for human creativity.
PMID:33879864
Advances in epigenetic therapeutics with focus on solid tumors.
PMID:33879235
FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.
PMID:33879057
Hepatitis C virus infection restricts human LINE-1 retrotransposition in hepatoma cells.
PMID:33872335
Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads.
PMID:33872311
Unearthing LTR Retrotransposon gag Genes Co-opted in the Deep Evolution of Eukaryotes.
PMID:33871607
Androgen Receptor-Related Non-coding RNAs in Prostate Cancer.
PMID:33869227
Role of DNA Methylation in Mediating Genetic Risk of Psychiatric Disorders.
PMID:33868039
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters.
PMID:33859876
HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy.
PMID:33858848
Mechanisms of enhancer action: the known and the unknown.
PMID:33858480
Immunotherapy-induced antibodies to endogenous retroviral envelope glycoprotein confer tumor protection in mice.
PMID:33857179
Integration of Transformative Platforms for the Discovery of Causative Genes in Cardiovascular Diseases.
PMID:33856594
Integrated transcription factor profiling with transcriptome analysis identifies L1PA2 transposons as global regulatory modulators in a breast cancer model.
PMID:33850167
Computational prediction of potential siRNA and human miRNA sequences to silence orf1ab associated genes for future therapeutics against SARS-CoV-2.
PMID:33846694
DNA methylation patterns expose variations in enhancer-chromatin modifications during embryonic stem cell differentiation.
PMID:33844685
Horizons in Veterinary Precision Oncology: Fundamentals of Cancer Genomics and Applications of Liquid Biopsy for the Detection, Characterization, and Management of Cancer in Dogs.
PMID:33834049
Silencing of LINE-1 retrotransposons is a selective dependency of myeloid leukemia.
PMID:33833453
A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome.
PMID:33833373
GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data.
PMID:33830196
The structure, function and evolution of a complete human chromosome 8.
PMID:33828295
A ride through the epigenetic landscape: aging reversal by reprogramming.
PMID:33825176
PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads.
PMID:33823910
Low Diversity of Human Variation Despite Mostly Mild Functional Impact of De Novo Variants.
PMID:33816556
DEEPGENTM-A Novel Variant Calling Assay for Low Frequency Variants.
PMID:33808158
Downfalls of Chemical Probes Acting at the Kinase ATP-Site: CK2 as a Case Study.
PMID:33807474
Construction of Whole Genomes from Scaffolds Using Single Cell Strand-Seq Data.
PMID:33807210
Non-Coding RNAs in Cancer Diagnosis and Therapy: Focus on Lung Cancer.
PMID:33803619
How Chaotic Is Genome Chaos?
PMID:33802828
Viroids and the Origin of Life.
PMID:33800543
Flowering and Seed Production across the Lemnaceae.
PMID:33800476
Palindromes in DNA-A Risk for Genome Stability and Implications in Cancer.
PMID:33799581
The Impact of Modern Technologies on Molecular Diagnostic Success Rates, with a Focus on Inherited Retinal Dystrophy and Hearing Loss.
PMID:33799353
The next horizon in precision oncology: Proteogenomics to inform cancer diagnosis and treatment.
PMID:33798439
Variable number tandem repeats - Their emerging role in sickness and health.
PMID:33794697
Pervasive cis effects of variation in copy number of large tandem repeats on local DNA methylation and gene expression.
PMID:33794196
Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome.
PMID:33792791
Alternative splicing of lncRNAs in human diseases.
PMID:33791145
Diversity of short interspersed nuclear elements (SINEs) in lepidopteran insects and evidence of horizontal SINE transfer between baculovirus and lepidopteran hosts.
PMID:33789582
X-ray Ptychography Imaging of Human Chromosomes After Low-dose Irradiation.
PMID:33786705
Genetic Risk Stratification: A Paradigm Shift in Prevention of Coronary Artery Disease.
PMID:33778213
Opportunities and challenges of artificial intelligence in the medical field: current application, emerging problems, and problem-solving strategies.
PMID:33771068
The evolution of patient-specific precision biomarkers to guide personalized heart-transplant care.
PMID:33768160
Mechanisms of Action of Hypomethylating Agents: Endogenous Retroelements at the Epicenter.
PMID:33768008
Efficacy and long-term safety of CRISPR/Cas9 genome editing in the SOD1-linked mouse models of ALS.
PMID:33767386
Consequences for Pancreatic β-Cell Identity and Function of Unregulated Transcript Processing.
PMID:33763030
Noncanonical immune response to the inhibition of DNA methylation by Staufen1 via stabilization of endogenous retrovirus RNAs.
PMID:33762305
G-quadruplexes originating from evolutionary conserved L1 elements interfere with neuronal gene expression in Alzheimer's disease.
PMID:33758195
Dissecting the transcriptome in cardiovascular disease.
PMID:33757121
The functional impact of nuclear reorganization in cellular senescence.
PMID:33755107
Evolutionary conservation of RNA sequence and structure.
PMID:33754485
Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics.
PMID:33750298
Advancing drug discovery using the power of the human genome.
PMID:33748968
Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
PMID:33742045
Exosomal Long Non-coding RNAs: Emerging Players in the Tumor Microenvironment.
PMID:33738133
Genomic regions associated with microdeletion/microduplication syndromes exhibit extreme diversity of structural variation.
PMID:33724415
Pinpointing the PRDM9-PRDM7 Gene Duplication Event During Primate Divergence.
PMID:33719332
Reconsidering LINE-1's role in cancer: does LINE-1 function as a reporter detecting early cancer-associated epigenetic signatures?
PMID:33717489
Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high-throughput RNA sequencing and DNA sequence.
PMID:33712618
Assessing the contribution of tumor mutational phenotypes to cancer progression risk.
PMID:33711014
From the discovery of DNA to current tools for DNA editing.
PMID:33710258
Retroviral Elements in Human Evolution and Neural Development.
PMID:33693440
Interrogating lncRNA functions via CRISPR/Cas systems.
PMID:33685382
Localization of RNAs in the nucleus: cis- and trans- regulation.
PMID:33682620
Altered DNA repair creates novel Alu/Alu repeat-mediated deletions.
PMID:33675284
Identification of Germline Genetic Variants that Increase Prostate Cancer Risk and Influence Development of Aggressive Disease.
PMID:33673083
Meta-Analysis of Gene Popularity: Less Than Half of Gene Citations Stem from Gene Regulatory Networks.
PMID:33672419
Transposable Elements and Stress in Vertebrates: An Overview.
PMID:33671215
Implications of Endogenous Retroelements in the Etiopathogenesis of Systemic Lupus Erythematosus.
PMID:33669709
Genetic Mechanisms Underlying Cortical Evolution in Mammals.
PMID:33659245
Structural variant detection in cancer genomes: computational challenges and perspectives for precision oncology.
PMID:33654267
An update of KAIKObase, the silkworm genome database.
PMID:33645624
From Genome-Wide to Environment-Wide: Capturing the Environome.
PMID:33645332
A Mechanism Leading to Changes in Copy Number Variations Affected by Transcriptional Level Might Be Involved in Evolution, Embryonic Development, Senescence, and Oncogenesis Mediated by Retrotransposons.
PMID:33644055
Gene Size Matters: An Analysis of Gene Length in the Human Genome.
PMID:33643374
VISTA: A Target to Manage the Innate Cytokine Storm.
PMID:33643285
Methylation status and long-fragment cell-free DNA are prognostic biomarkers for gastric cancer.
PMID:33641249
Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
PMID:33632895
Epigenetics of cutaneous T-cell lymphoma: biomarkers and therapeutic potentials.
PMID:33628583
Closing in on a complete human genome.
PMID:33619406
Elucidation of Epigenetic Landscape in Coronary Artery Disease: A Review on Basic Concept to Personalized Medicine.
PMID:33598635
The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects.
PMID:33591322
SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans.
PMID:33587037
SARS-CoV-2 Proteins Exploit Host's Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways.
PMID:33585554
Mammalian Germ Cell Development: From Mechanism to In Vitro Reconstitution.
PMID:33577794
Fatal perinatal mitochondrial cardiac failure caused by recurrent de novo duplications in the ATAD3 locus.
PMID:33575671
A random forest-based framework for genotyping and accuracy assessment of copy number variations.
PMID:33575619
Benchmark study comparing liftover tools for genome conversion of epigenome sequencing data.
PMID:33575605
Five Circular RNAs in Metabolism Pathways Related to Prostate Cancer.
PMID:33574834
Sense-oriented AluYRa1 elements provide a lineage-specific transcription environment for polyadenylation.
PMID:33574427
Early life stress during the neonatal period alters social play and Line1 during the juvenile stage of development.
PMID:33574362
LAMA: automated image analysis for the developmental phenotyping of mouse embryos.
PMID:33574040
Systemic Lupus Erythematosus in Children and Young People.
PMID:33569643
The broken promise that undermines human genome research.
PMID:33568833
How the human genome transformed study of rare diseases.
PMID:33568830
A wealth of discovery built on the Human Genome Project - by the numbers.
PMID:33568828
From one human genome to a complex tapestry of ancestry.
PMID:33568827
Breaking through the unknowns of the human reference genome.
PMID:33568817
The Cancer Genome: Paradigm or Paradox?
PMID:33567511
A mesoscopic simulator to uncover heterogeneity and evolutionary dynamics in tumors.
PMID:33566821
L1 retrotransposons exploit RNA m6A modification as an evolutionary driving force.
PMID:33563981
Evolution of genome structure in the Drosophila simulans species complex.
PMID:33563718
RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs.
PMID:33563338
Role of Transposable Elements in Gene Regulation in the Human Genome.
PMID:33557056
Human endogenous retroviruses in cancer: Expression, regulation and function.
PMID:33552242
Sea Urchin as a Universal Model for Studies of Gene Networks.
PMID:33552139
Genomic Variation, Evolvability, and the Paradox of Mental Illness.
PMID:33551865
Invasive and Noninvasive Nonfunctioning Gonadotroph Pituitary Tumors Differ in DNA Methylation Level of LINE-1 Repetitive Elements.
PMID:33546126
Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution.
PMID:33545556
Evolutionary dynamics of transposable elements in bdelloid rotifers.
PMID:33543711
Complicated legacies: The human genome at 20.
PMID:33542123
Creating artificial human genomes using generative neural networks.
PMID:33539374
Benchmarking of next and third generation sequencing technologies and their associated algorithms for de novo genome assembly.
PMID:33537807
Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey.
PMID:33537181
BRCA1 and RNAi factors promote repair mediated by small RNAs and PALB2-RAD52.
PMID:33536619
Circular RNA circPIKfyve acts as a sponge of miR-21-3p to enhance antiviral immunity through regulating MAVS in teleost fish.
PMID:33536171
Impact of short-read sequencing on the misassembly of a plant genome.
PMID:33530937
Targeted next-generation sequencing-based detection of microsatellite instability in colorectal carcinomas.
PMID:33524032
Homotypic clustering of L1 and B1/Alu repeats compartmentalizes the 3D genome.
PMID:33514913
Noncanonical open reading frames encode functional proteins essential for cancer cell survival.
PMID:33510483
tsRNAs: Novel small molecules from cell function and regulatory mechanism to therapeutic targets.
PMID:33507586
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA.
PMID:33506766
Complete sequences of Schizosaccharomyces pombe subtelomeres reveal multiple patterns of genome variation.
PMID:33504776
The impact of purifying and background selection on the inference of population history: problems and prospects.
PMID:33501439
The search for RNA-binding proteins: a technical and interdisciplinary challenge.
PMID:33492363
Genomic Study of COVID-19 Corona Virus Excludes Its Origin from Recombination or Characterized Biological Sources and Suggests a Role for HERVS in Its Wide Range Symptoms.
PMID:33487779
Intercellular Communication in the Nervous System Goes Viral.
PMID:33485691
Machine learning as the new approach in understanding biomarkers of suicidal behavior.
PMID:33485296
Estimating the accuracy of pharmacophore-based detection of cognate receptor-ligand pairs in the immunoglobulin superfamily.
PMID:33483991
A comprehensive microsatellite landscape of human Y-DNA at kilobase resolution.
PMID:33482734
Control of LINE-1 Expression Maintains Genome Integrity in Germline and Early Embryo Development.
PMID:33481218
Epigenetic and non-coding regulation of alcohol abuse and addiction.
PMID:33461665
The Texas Society of Pathologists: molded by the legacy of pathology and focused on excellence in medicine for 100 years and beyond.
PMID:33456200
50th anniversary of the discovery of reverse transcriptase.
PMID:33448895
Recognize Yourself-Innate Sensing of Non-LTR Retrotransposons.
PMID:33445593
A Highly Conserved Circular RNA circRasGEF1B Enhances Antiviral Immunity by Regulating miR-21-3p/MITA Pathway in Lower Vertebrates.
PMID:33441345
Genome diversity in Ukraine.
PMID:33438729
The Dfam community resource of transposable element families, sequence models, and genome annotations.
PMID:33436076
Multiple Alu Exonization in 3'UTR of a Primate-Specific Isoform of CYP20A1 Creates a Potential miRNA Sponge.
PMID:33434274
Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference.
PMID:33431880
Half a century of the reverse transcriptase-happy birthday!
PMID:33430901
Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2.
PMID:33413422
Transposable element-derived sequences in vertebrate development.
PMID:33407840
Signature changes in the expressions of protein-coding genes, lncRNAs, and repeat elements in early and late cellular senescence.
PMID:33402863
TFs for TEs: the transcription factor repertoire of mammalian transposable elements.
PMID:33397727
Expression profiles, biological functions and clinical significance of circRNAs in bladder cancer.
PMID:33397425
Probably Correct: Rescuing Repeats with Short and Long Reads.
PMID:33396198
Alu retrotransposons and COVID-19 susceptibility and morbidity.
PMID:33390179
Seeing the forest for the trees: Retrieving plant secondary biochemical pathways from metabolome networks.
PMID:33384856
Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data.
PMID:33355230
Integrative Analysis of Gene-Specific DNA Methylation and Untargeted Metabolomics Data from the ELEMENT Cohort.
PMID:33354655
Gene regulation by long non-coding RNAs and its biological functions.
PMID:33353982
Adaptive evolution of an essential telomere protein restricts telomeric retrotransposons.
PMID:33350936
Factors that mold the nuclear landscape of HIV-1 integration.
PMID:33337475
Effects of activation of the LINE-1 antisense promoter on the growth of cultured cells.
PMID:33335226
Use of Genomic Information in Health Impact Assessment is Yet to Come: A Systematic Review.
PMID:33334033
Involvement of DNA Repair Genes and System of Radiation-Induced Activation of Transposons in Formation of Transgenerational Effects.
PMID:33329741
Antifreeze protein dispersion in eelpouts and related fishes reveals migration and climate alteration within the last 20 Ma.
PMID:33320906
GAS5 regulates diabetic cardiomyopathy via miR‑221‑3p/p27 axis‑associated autophagy.
PMID:33313941
Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription.
PMID:33303640
Identification of Long Noncoding RNA Biomarkers for Hepatocellular Carcinoma Using Single-Sample Networks.
PMID:33299877
Genotyping of Francisella tularensis subsp. holarctica from Hares in Germany.
PMID:33291395
NGS-based identification and tracing of microsatellite instability from minute amounts DNA using inter-Alu-PCR.
PMID:33290560
Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data.
PMID:33283855
How Retroviruses and Retrotransposons in Our Genome May Contribute to Autoimmunity in Rheumatological Conditions.
PMID:33281822
Epigenetic Alterations in the Gastrointestinal Tract: Current and Emerging Use for Biomarkers of Cancer.
PMID:33279516
Striking heterogeneity of somatic L1 retrotransposition in single normal and cancerous gastrointestinal cells.
PMID:33277430
Building genomes to understand biology.
PMID:33268788
A novel computational model for predicting potential LncRNA-disease associations based on both direct and indirect features of LncRNA-disease pairs.
PMID:33267800
Deep Learning in LncRNAome: Contribution, Challenges, and Perspectives.
PMID:33266128
The Role of APOBECs in Viral Replication.
PMID:33266042
Developmental differences in genome replication program and origin activation.
PMID:33264404
FTH1 Pseudogenes in Cancer and Cell Metabolism.
PMID:33260500
'There and Back Again'-Forward Genetics and Reverse Phenotyping in Pulmonary Arterial Hypertension.
PMID:33256119
Evaluating the Genomic Parameters Governing rAAV-Mediated Homologous Recombination.
PMID:33248247
Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes.
PMID:33244064
CircRNAs open a new era in the study of cardiovascular disease (Review).
PMID:33236162
Challenges of Precision Medicine for Atherosclerotic Cardiovascular Disease Based on Human Genome Information.
PMID:33229815
Identification of the novel Np17 oncogene in human leukemia.
PMID:33226963
Perversely expressed long noncoding RNAs can alter host response and viral proliferation in SARS-CoV-2 infection.
PMID:33224264
Identification of high-copy number long terminal repeat retrotransposons and their expansion in Phalaenopsis orchids.
PMID:33213366
Structure of the Receptor Binding Domain of EnvP(b)1, an Endogenous Retroviral Envelope Protein Expressed in Human Tissues.
PMID:33203760
LC-N2G: a local consistency approach for nutrigenomics data analysis.
PMID:33203358
Human Endogenous Retrovirus K Rec forms a Regulatory Loop with MITF that Opposes the Progression of Melanoma to an Invasive Stage.
PMID:33202765
Hotspots of Human Mutation.
PMID:33199048
Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression.
PMID:33197463
Exploring the changing geographical pattern of international scientific collaborations through the prism of cities.
PMID:33196668
Endoplasmic Reticulum Associated Protein Degradation (ERAD) in the Pathology of Diseases Related to TGFβ Signaling Pathway: Future Therapeutic Perspectives.
PMID:33195419
Establishment of Quantitative PCR Assays for Active Long Interspersed Nuclear Element-1 Subfamilies in Mice and Applications to the Analysis of Aging-Associated Retrotransposition.
PMID:33193604
GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline.
PMID:33193602
The Role of DNA Methylation in Ischemic Stroke: A Systematic Review.
PMID:33193003
E3 Ubiquitin Ligases in Neurological Diseases: Focus on Gigaxonin and Autophagy.
PMID:33192535
High levels of LINE-1 transposable elements expressed in Kaposi's sarcoma-associated herpesvirus-related primary effusion lymphoma.
PMID:33188297
Frequency and methylation status of selected retrotransposition competent L1 loci in amyotrophic lateral sclerosis.
PMID:33187550
A SINE-VNTR-Alu in the LRIG2 Promoter Is Associated with Gene Expression at the Locus.
PMID:33187279
The tumor suppressor microRNA let-7 inhibits human LINE-1 retrotransposition.
PMID:33177501
Lung transcriptome of a COVID-19 patient and systems biology predictions suggest impaired surfactant production which may be druggable by surfactant therapy.
PMID:33173052
LINE-1 retrotransposon methylation in chorionic villi of first trimester miscarriages with aneuploidy.
PMID:33170392
Modes of genetic adaptations underlying functional innovations in the rumen.
PMID:33165812
Using Drosophila melanogaster To Discover Human Disease Genes: An Educational Primer for Use with "Amyotrophic Lateral Sclerosis Modifiers in Drosophila Reveal the Phospholipase D Pathway as a Potential Therapeutic Target".
PMID:33158986
Clinical Interpretation and Management of Genetic Variants.
PMID:33145465
Ensembl 2021.
PMID:33137190
Effects of zinc finger protein 403 on the proliferation, migration and invasion abilities of prostate cancer cells.
PMID:33125130
Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus.
PMID:33122305
Strategic vision for improving human health at The Forefront of Genomics.
PMID:33116284
Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists.
PMID:33106560
Comprehensive Transcriptome Profiling of Dairy Goat Mammary Gland Identifies Genes and Networks Crucial for Lactation and Fatty Acid Metabolism.
PMID:33101357
Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans.
PMID:33098466
Beyond the RNA-dependent function of LncRNA genes.
PMID:33095159
Genome streamlining in a minute herbivore that manipulates its host plant.
PMID:33095158
Twenty Years Later: A Comprehensive Review of the X Chromosome Use in Forensic Genetics.
PMID:33093840
A Journey through Genetic Architecture and Predisposition of Coronary Artery Disease.
PMID:33093801
Genetic Aspects in Shoulder Disorders.
PMID:33093716
Endogenous retroviruses drive KRAB zinc-finger protein family expression for tumor suppression.
PMID:33087347
Intrinsic DNA topology as a prioritization metric in genomic fine-mapping studies.
PMID:33084892
Evolutionary History of Alpha Satellite DNA Repeats Dispersed within Human Genome Euchromatin.
PMID:33078196
Next Generation Sequencing Based Forward Genetic Approaches for Identification and Mapping of Causal Mutations in Crop Plants: A Comprehensive Review.
PMID:33066352
An Intronic Alu Element Attenuates the Transcription of a Long Non-coding RNA in Human Cell Lines.
PMID:33061937
p53 directly represses human LINE1 transposons.
PMID:33060137
Whole genome sequencing data of multiple individuals of Pakistani descent.
PMID:33051442
RNA editing in mesothelioma: a look forward.
PMID:33050791
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome.
PMID:33021634
Posttranscriptional regulation of human endogenous retroviruses by RNA-binding motif protein 4, RBM4.
PMID:33020268
New Aspects of the Epigenetics of Pancreatic Carcinogenesis.
PMID:33014438
Variants of significance: medical genetics and surgical outcomes in congenital heart disease.
PMID:33009125
Immunological Features with DNA Microsatellite Alterations in Patients with Colorectal Cancer.
PMID:33000102
Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D.
PMID:32999275
RNA-cDNA hybrids mediate transposition via different mechanisms.
PMID:32994470
Reconstruction of lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveals functional lncRNAs in skin cutaneous melanoma.
PMID:32993558
Host Gene Regulation by Transposable Elements: The New, the Old and the Ugly.
PMID:32993145
tRNA-Derived Small RNAs: Novel Epigenetic Regulators.
PMID:32992597
Tissue-specific usage of transposable element-derived promoters in mouse development.
PMID:32988383
The Role of Micro-RNAs and Circulating Tumor Markers as Predictors of Response to Neoadjuvant Therapy in Locally Advanced Rectal Cancer.
PMID:32987896
A Model-Driven Quantitative Analysis of Retrotransposon Distributions in the Human Genome.
PMID:32986810
Transposon expression in the Drosophila brain is driven by neighboring genes and diversifies the neural transcriptome.
PMID:32973040
Non-Coding RNAs, a Novel Paradigm for the Management of Gastrointestinal Stromal Tumors.
PMID:32972022
Connecting the Missing Dots: ncRNAs as Critical Regulators of Therapeutic Susceptibility in Breast Cancer.
PMID:32967267
Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD.
PMID:32966296
Transposon clusters as substrates for aberrant splice-site activation.
PMID:32965162
Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains.
PMID:32963593
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing.
PMID:32962098
Predicting Response to Immunotherapy in Metastatic Renal Cell Carcinoma.
PMID:32961934
A multi-omics approach to solving problems in plant disease ecology.
PMID:32960892
Analysis, identification and visualization of subgroups in genomics.
PMID:32954413
Intronic regions of the human coagulation factor VIII gene harboring transcription factor binding sites with a strong bias towards the short-interspersed elements.
PMID:32944665
Nucleotide sequencing of the HoxA gene cluster using Gorilla fosmid clones.
PMID:32934753
ZBED1/DREF: A transcription factor that regulates cell proliferation.
PMID:32934705
Immune activation by a multigene family of lectins with variable tandem repeats in oriental river prawn (Macrobrachium nipponense).
PMID:32931720
Mouse tumor susceptibility genes identify drug combinations for multiple myeloma.
PMID:32923678
Block and Lock HIV Cure Strategies to Control the Latent Reservoir.
PMID:32923412
TIP_finder: An HPC Software to Detect Transposable Element Insertion Polymorphisms in Large Genomic Datasets.
PMID:32917036
Mosaicism in Human Health and Disease.
PMID:32916079
At the dawn of the transcriptomic medicine.
PMID:32915637
Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny.
PMID:32912931
Differences between human and chimpanzee genomes and their implications in gene expression, protein functions and biochemical properties of the two species.
PMID:32912141
Proteomic Analysis of Human Endometrial Tissues Reveals the Roles of PI3K/AKT/mTOR Pathway and Tumor Angiogenesis Molecules in the Pathogenesis of Endometrial Cancer.
PMID:32908897
Evaluation of Plasma Circulating Cell Free DNA Concentration and Integrity in Patients with Prostate Cancer in Jamaica: A Preliminary Study.
PMID:32906694
Next-Generation Sequencing at High Sequencing Depth as a Tool to Study the Evolution of Metastasis Driven by Genetic Change Events of Lung Squamous Cell Carcinoma.
PMID:32903616
Use of an Exposome Approach to Understand the Effects of Exposures From the Natural, Built, and Social Environments on Cardio-Vascular Disease Onset, Progression, and Outcomes.
PMID:32903514
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice.
PMID:32899740
Endogenous retroviruses drive species-specific germline transcriptomes in mammals.
PMID:32895553
Aberrant Methylation of LINE-1 Transposable Elements: A Search for Cancer Biomarkers.
PMID:32887319
Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end of the second plague pandemic.
PMID:32884081
Replication stress at microsatellites causes DNA double-strand breaks and break-induced replication.
PMID:32873711
Reverse Transcriptase Affects Gametogenesis and Preimplantation Development in Mouse.
PMID:32871749
Characterization and Localization of Calb2 in Both the Testis and Ovary of the Japanese Flounder (Paralichthys olivaceus).
PMID:32858799
Lamivudine Inhibits Alu RNA-induced Retinal Pigment Epithelium Degeneration via Anti-inflammatory and Anti-senescence Activities.
PMID:32855848
Molecular Characterization of Testicular Germ Cell Tumors Using Tissue Microdissection.
PMID:32852755
New Understanding of the Relevant Role of LINE-1 Retrotransposition in Human Disease and Immune Modulation.
PMID:32850797
Forensic Autosomal Short Tandem Repeats and Their Potential Association With Phenotype.
PMID:32849844
Background Selection Does Not Mimic the Patterns of Genetic Diversity Produced by Selective Sweeps.
PMID:32847814
Potential of transposon-mediated cellular reprogramming towards cell-based therapies.
PMID:32843912
Pan-genomic open reading frames: A potential supplement of single nucleotide polymorphisms in estimation of heritability and genomic prediction.
PMID:32833967
A report on DNA sequence determinants in gene expression.
PMID:32831525
Application of Next Generation Sequencing in Laboratory Medicine.
PMID:32829577
Silencing and Transcriptional Regulation of Endogenous Retroviruses: An Overview.
PMID:32823517
Untangling Data in Precision Oncology - A Model for Chronic Diseases?
PMID:32823314
Identifying and Targeting Human Tumor Antigens for T Cell-Based Immunotherapy of Solid Tumors.
PMID:32822573
Presence of Endogenous Viral Elements Negatively Correlates with Feline Leukemia Virus Susceptibility in Puma and Domestic Cat Cells.
PMID:32817213
Cryptic genetic variation enhances primate L1 retrotransposon survival by enlarging the functional coiled coil sequence space of ORF1p.
PMID:32797042
The Prospective Study of Epigenetic Regulatory Profiles in Sport and Exercise Monitored Through Chromosome Conformation Signatures.
PMID:32784689
Trypanosoma cruzi Genome 15 Years Later: What Has Been Accomplished?
PMID:32781761
The Long Non-coding Road to Atherosclerosis.
PMID:32772181
The Human Genome Project changed everything.
PMID:32770171
Polygenic risk score as clinical utility in psychiatry: a clinical viewpoint.
PMID:32770057
A First NGS Investigation Suggests No Association Between Viruses and Canine Cancers.
PMID:32766289
Analysis of Salmonella typhimurium Protein-Targeting in the Nucleus of Host Cells and the Implications in Colon Cancer: An in-silico Approach.
PMID:32765017
Comparative genomic analysis of eutherian fibroblast growth factor genes.
PMID:32758140
Whole Genome Sequencing of Four Representatives From the Admixed Population of the United Arab Emirates.
PMID:32754195
Proteomics and Metabolomics for Cystic Fibrosis Research.
PMID:32751630
Single-cell proteomic analysis.
PMID:32748522
Genomic Diagnosis for Pediatric Disorders: Revolution and Evolution.
PMID:32733828
Tumor DNA hypomethylation of LINE-1 is associated with low tumor grade of breast cancer in Tunisian patients.
PMID:32724446
Human L1 Transposition Dynamics Unraveled with Functional Data Analysis.
PMID:32722770
How Dietary Factors Affect DNA Methylation: Lesson from Epidemiological Studies.
PMID:32722411
Endogenous Retroviruses Walk a Fine Line between Priming and Silencing.
PMID:32718022
How Will Genetics Inform the Clinical Care of Atrial Fibrillation?
PMID:32716712
BIOMAP: A Home for All Biology Methods.
PMID:32715089
Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci.
PMID:32709900
Consequence of Paradigm Shift with Repeat Landscapes in Reptiles: Powerful Facilitators of Chromosomal Rearrangements for Diversity and Evolution.
PMID:32708239
Brain cell somatic gene recombination and its phylogenetic foundations.
PMID:32699111
Prostate cancer biology & genomics.
PMID:32676435
Regulation of stem cell function and neuronal differentiation by HERV-K via mTOR pathway.
PMID:32669437
Human Cancers Express TRAILshort, a Dominant Negative TRAIL Splice Variant, Which Impairs Immune Effector Cell Killing of Tumor Cells.
PMID:32669373
A deliberative study of public attitudes towards sharing genomic data within NHS genomic medicine services in England.
PMID:32664786
Telomere-to-telomere assembly of a complete human X chromosome.
PMID:32663838
Identification and Genotyping of Transposable Element Insertions From Genome Sequencing Data.
PMID:32662945
Regulation of Error-Prone DNA Double-Strand Break Repair and Its Impact on Genome Evolution.
PMID:32660124
Cancer systems immunology.
PMID:32657757
Maximal Segmental Score Method for Localizing Recessive Disease Variants Based on Sequence Data.
PMID:32655614
Enhancer Function of MicroRNA-3681 Derived from Long Terminal Repeats Represses the Activity of Variable Number Tandem Repeats in the 3' UTR of SHISA7.
PMID:32655015
Cancer Associated Endogenous Retroviruses: Ideal Immune Targets for Adenovirus-Based Immunotherapy.
PMID:32650622
Non-Coding RNA Editing in Cancer Pathogenesis.
PMID:32650588
Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding.
PMID:32649757
Higher Germline Mutagenesis of Genes with Stronger Testis Expressions Refutes the Transcriptional Scanning Hypothesis.
PMID:32638015
Strategies for whole-exome sequencing analysis in a case series study of familial male infertility.
PMID:32637866
Handling multi-mapped reads in RNA-seq.
PMID:32637053
Transposable elements in Drosophila.
PMID:32636946
mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.
PMID:32632025
Fully Phased Sequence of a Diploid Human Genome Determined de Novo from the DNA of a Single Individual.
PMID:32631951
Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns.
PMID:32631327
Pro-Inflammatory Signaling Upregulates a Neurotoxic Conotoxin-Like Protein Encrypted Within Human Endogenous Retrovirus-K.
PMID:32629888
Nasopharyngeal Haemophilus and local immune response during infant respiratory syncytial virus infection.
PMID:32628963
Breathing fresh air into respiratory research with single-cell RNA sequencing.
PMID:32620586
Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.
PMID:32616928
Desiccation does not drastically increase the accessibility of exogenous DNA to nuclear genomes: evidence from the frequency of endosymbiotic DNA transfer.
PMID:32611311
LDtrait: An Online Tool for Identifying Published Phenotype Associations in Linkage Disequilibrium.
PMID:32606005
Long noncoding RNA H19X is a key mediator of TGF-β-driven fibrosis.
PMID:32603313
Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates.
PMID:32602886
Retrotransposons in pluripotent stem cells.
PMID:32588192
The IRI-DICE hypothesis: ionizing radiation-induced DSBs may have a functional role for non-deterministic responses at low doses.
PMID:32583290
Infectious Triggers in Periodontitis and the Gut in Rheumatoid Arthritis (RA): A Complex Story About Association and Causality.
PMID:32582191
Efavirenz as a potential drug for the treatment of triple-negative breast cancers.
PMID:32566961
The Battle to Sequence the Bread Wheat Genome: A Tale of the Three Kingdoms.
PMID:32561470
Plasma cell-free DNA predicts pediatric cerebral malaria severity.
PMID:32554925
Characteristics of circular RNAs generated by human Survival Motor Neuron genes.
PMID:32553550
A comparative study of long interspersed element-1 protein immunoreactivity in cutaneous malignancies.
PMID:32552892
High-Throughput Sequencing is a Crucial Tool to Investigate the Contribution of Human Endogenous Retroviruses (HERVs) to Human Biology and Development.
PMID:32545287
Closing Human Reference Genome Gaps: Identifying and Characterizing Gap-Closing Sequences.
PMID:32532800
Multi-branch Convolutional Neural Network for Identification of Small Non-coding RNA genomic loci.
PMID:32528107
Nanopore sequencing as a scalable, cost-effective platform for analyzing polyclonal vector integration sites following clinical T cell therapy.
PMID:32527930
DNA methylation patterns of LINE-1 and Alu for pre-symptomatic dementia in type 2 diabetes.
PMID:32525932
Single-Cell Transcriptomics Analysis Identifies Nuclear Protein 1 as a Regulator of Docetaxel Resistance in Prostate Cancer Cells.
PMID:32513898
Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes.
PMID:32513296
Long-read human genome sequencing and its applications.
PMID:32504078
A single mutation in the ACTR8 gene associated with lineage-specific expression in primates.
PMID:32503430
DNA hypomethylation promotes transposable element expression and activation of immune signaling in renal cell cancer.
PMID:32493845
Education in the genomics era: Generating high-quality genome assemblies in university courses.
PMID:32491162
Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs.
PMID:32489435
Assembly and annotation of an Ashkenazi human reference genome.
PMID:32487205
SETDB1-Mediated Silencing of Retroelements.
PMID:32486217
Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates.
PMID:32479260
The functional cooperation of 5-HT1A and mGlu4R in HEK-293 cell line.
PMID:32472388
The quest to slow ageing through drug discovery.
PMID:32467649
Mosaic Somatic Gene Recombination as a Potentially Unifying Hypothesis for Alzheimer's Disease.
PMID:32457796
Vertical lossless genomic data compression tools for assembled genomes: A systematic literature review.
PMID:32453750
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera.
PMID:32442304
Non-coding RNAs in Nervous System Development and Disease.
PMID:32435641
Viral infection impacts transposable element transcript amounts in Drosophila.
PMID:32434916
Reawakening the Developmental Origins of Cancer Through Transposable Elements.
PMID:32432029
Mechanisms of Long Non-Coding RNAs in Cancers and Their Dynamic Regulations.
PMID:32429086
Review: Understanding Rare Genetic Diseases in Low Resource Regions Like Jammu and Kashmir - India.
PMID:32425985
Progress, Challenges, and Surprises in Annotating the Human Genome.
PMID:32421357
Genomic Indexing by Somatic Gene Recombination of mRNA/ncRNA - Does It Play a Role in Genomic Mosaicism, Memory Formation, and Alzheimer's Disease?
PMID:32411177
High Glucose Induces Lipid Accumulation via 25-Hydroxycholesterol DNA-CpG Methylation.
PMID:32408171
Conserved Herpesvirus Kinase ORF36 Activates B2 Retrotransposons during Murine Gammaherpesvirus Infection.
PMID:32404524
Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.
PMID:32404186
Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
PMID:32385271
Characterization of long G4-rich enhancer-associated genomic regions engaging in a novel loop:loop 'G4 Kissing' interaction.
PMID:32383760
A single-cell transcriptomic landscape of primate arterial aging.
PMID:32371953
Oxidative Stress in DNA Repeat Expansion Disorders: A Focus on NRF2 Signaling Involvement.
PMID:32369911
HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C.
PMID:32369554
The Sophisticated Transcriptional Response Governed by Transposable Elements in Human Health and Disease.
PMID:32366056
Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation.
PMID:32360393
The Simons Genome Diversity Project: A Global Analysis of Mobile Element Diversity.
PMID:32359137
Are Pathogenic Germline Variants in Metastatic Melanoma Associated with Resistance to Combined Immunotherapy?
PMID:32354124
DNA methylation level in blood and relations to breast cancer, risk factors and environmental exposure in Greenlandic Inuit women.
PMID:32352194
Comparison of Behavior and Genetic Structure in Populations of Family and Kenneled Beagles.
PMID:32351979
Recent Trends of microRNA Significance in Pediatric Population Glioblastoma and Current Knowledge of Micro RNA Function in Glioblastoma Multiforme.
PMID:32349263
Widespread and tissue-specific expression of endogenous retroelements in human somatic tissues.
PMID:32345368
The functional study of human proteins using humanized yeast.
PMID:32342338
Aging-regulated anti-apoptotic long non-coding RNA Sarrah augments recovery from acute myocardial infarction.
PMID:32341350
The science commons in life science research: structure, function, and value of access to genetic diversity.
PMID:32336774
A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi.
PMID:32326892
Insertion of Telomeric Repeats in the Human and Horse Genomes: An Evolutionary Perspective.
PMID:32325780
Polygenic Scores to Assess Atherosclerotic Cardiovascular Disease Risk: Clinical Perspectives and Basic Implications.
PMID:32324503
Purification of Bionanoparticles.
PMID:32313384
The Biological Functions of Non-coding RNAs: From a Line to a Circle.
PMID:32309571
Identification and Ranking of Biomedical Informatics Researcher Citation Statistics through a Google Scholar Scraper.
PMID:32308860
Fungal evolution: cellular, genomic and metabolic complexity.
PMID:32301582
RepeatModeler2 for automated genomic discovery of transposable element families.
PMID:32300014
TranspoScope: interactive visualization of retrotransposon insertions.
PMID:32298413
A reference map of the human binary protein interactome.
PMID:32296183
Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes.
PMID:32286261
An ancient evolutionary connection between Ribonuclease A and EndoU families.
PMID:32284351
Gallop Racing Shifts Mature mRNA towards Introns: Does Exercise-Induced Stress Enhance Genome Plasticity?
PMID:32283859
Tumour grade significantly correlates with total dysfunction of tumour tissue-infiltrating lymphocytes in renal cell carcinoma.
PMID:32277125
Codon Usage and Splicing Jointly Influence mRNA Localization.
PMID:32275854
Systems Biochemistry Approaches to Defining Mitochondrial Protein Function.
PMID:32268114
Long Non-coding RNAs: Major Regulators of Cell Stress in Cancer.
PMID:32266130
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID:32252787
SAMHD1 Functions and Human Diseases.
PMID:32244340
DNA methylation profiling identifies a high effect genetic variant for lipoprotein(a) levels.
PMID:32237968
Reciprocal regulation between alternative splicing and the DNA damage response.
PMID:32236390
Considerations for Using the Vasculature as a Coordinate System to Map All the Cells in the Human Body.
PMID:32232057
Differential Responses of LINE-1 in the Dentate Gyrus, Striatum and Prefrontal Cortex to Chronic Neurotoxic Methamphetamine: A Study in Rat Brain.
PMID:32231019
The genome-wide landscape of C:G > T:A polymorphism at the CpG contexts in the human population.
PMID:32228436
In or Out? New Insights on Exon Recognition through Splice-Site Interdependency.
PMID:32225107
Divergence-Based Introgression Polarization.
PMID:32219392
Viral component of the human genome.
PMID:32214476
Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
PMID:32213349
How We Think about Targeting RNA with Small Molecules.
PMID:32212706
Gene editing and CRISPR in the clinic: current and future perspectives.
PMID:32207531
Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin.
PMID:32203508
Long non-coding RNA GRASLND enhances chondrogenesis via suppression of the interferon type II signaling pathway.
PMID:32202492
Transient DNMT3L Expression Reinforces Chromatin Surveillance to Halt Senescence Progression in Mouse Embryonic Fibroblast.
PMID:32195249
Discussion of Trial Designs for Biomarker Identification and Validation Through the Use of Case Studies.
PMID:32190807
Dynamic LTR retrotransposon transcriptome landscape in septic shock patients.
PMID:32188504
Is Gene-Size an Issue for the Diagnosis of Skeletal Muscle Disorders?
PMID:32176652
Beyond classic editing: innovative CRISPR approaches for functional studies of long non-coding RNA.
PMID:32161809
Genomic Repeats Categorize Genes with Distinct Functions for Orchestrated Regulation.
PMID:32160538
In Vivo Delivery of Nucleic Acid-Encoded Monoclonal Antibodies.
PMID:32157600
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes.
PMID:32157095
Dynamic Signatures of the Epigenome: Friend or Foe?
PMID:32156057
SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes.
PMID:32153642
Jump around: transposons in and out of the laboratory.
PMID:32148769
A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals.
PMID:32145015
Genetic and Genomic Advances in Developmental Models: Applications for Nutrition Research.
PMID:32135011
RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells.
PMID:32127417
Dnmt3a and Dnmt3b-Decommissioned Fetal Enhancers are Linked to Kidney Disease.
PMID:32127410
Does DNA Methylation Matter in FSHD?
PMID:32121044
Transgene-mediated skeletal phenotypic variation in zebrafish.
PMID:32112658
Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions.
PMID:32110248
Mutational Load and the Functional Fraction of the Human Genome.
PMID:32108234
Data libraries - the missing element for modeling biological systems.
PMID:32100391
Precision health: A nursing perspective.
PMID:32099853
Villains or heroes? The raison d'être of viruses.
PMID:32099651
Micro RNA Molecules as Modulators of Treatment Resistance, Immune Checkpoints Controllers and Sensitive Biomarkers in Glioblastoma Multiforme.
PMID:32098401
Role of Non-Coding RNAs in the Development of Targeted Therapy and Immunotherapy Approaches for Chronic Lymphocytic Leukemia.
PMID:32098192
Finding and extending ancient simple sequence repeat-derived regions in the human genome.
PMID:32095164
Systematic identification of silencers in human cells.
PMID:32094911
Awakening the dark side: retrotransposon activation in neurodegenerative disorders.
PMID:32092528
A guide to naming human non-coding RNA genes.
PMID:32090359
Minireview on the Relations between Gut Microflora and Parkinson's Disease: Further Biochemical (Oxidative Stress), Inflammatory, and Neurological Particularities.
PMID:32089768
Insertion of LINE-1 Retrotransposon Inducing Exon Inversion Causes a Rotor Syndrome Phenotype.
PMID:32082363
Brain Cytoplasmic RNAs in Neurons: From Biosynthesis to Function.
PMID:32079202
Differential Allele-Specific Expression Uncovers Breast Cancer Genes Dysregulated by Cis Noncoding Mutations.
PMID:32078798
Decoding a highly mixed Kazakh genome.
PMID:32076829
Short interspersed nuclear element (SINE)-mediated post-transcriptional effects on human and mouse gene expression: SINE-UP for active duty.
PMID:32075563
sRNA/L1 retrotransposition: using siRNAs and miRNAs to expand the applications of the cell culture-based LINE-1 retrotransposition assay.
PMID:32075559
An atlas of transposable element-derived alternative splicing in cancer.
PMID:32075558
Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells.
PMID:32075555
Widespread correlation of KRAB zinc finger protein binding with brain-developmental gene expression patterns.
PMID:32075554
Transposable elements have contributed human regulatory regions that are activated upon bacterial infection.
PMID:32075553
BlobToolKit - Interactive Quality Assessment of Genome Assemblies.
PMID:32071071
Traveler, a New DD35E Family of Tc1/Mariner Transposons, Invaded Vertebrates Very Recently.
PMID:32068835
Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines.
PMID:32055257
What animals can teach us about evolution, the human genome, and human disease.
PMID:32054372
Protective immunity elicited by the nematode-conserved As37 recombinant protein against Ascaris suum infection.
PMID:32053593
Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions.
PMID:32051932
The draft genome of mandrill (Mandrillus sphinx): An Old World monkey.
PMID:32051450
Re-recognition of pseudogenes: From molecular to clinical applications.
PMID:32042317
Tissue and cancer-specific expression of DIEXF is epigenetically mediated by an Alu repeat.
PMID:32041475
Artificial Intelligence for Cardiac Imaging-Genetics Research.
PMID:32039240
Studies on the Small Body Size Mouse Developed by Mutagen N-Ethyl-N-nitrosourea.
PMID:32038779
Pan-genomics in the human genome era.
PMID:32034321
Human Long Noncoding RNA Interactome: Detection, Characterization and Function.
PMID:32033158
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
PMID:32024998
Genetic tests by next-generation sequencing in children with developmental delay and/or intellectual disability.
PMID:32024334
Prediction of short-term neonatal complications in preterm infants using exome-wide genetic variation and gestational age: a pilot study.
PMID:32023625
Precise hepatectomy in the intelligent digital era.
PMID:32015674
Unveiling ncRNA regulatory axes in atherosclerosis progression.
PMID:32009226
ATAC-Me Captures Prolonged DNA Methylation of Dynamic Chromatin Accessibility Loci during Cell Fate Transitions.
PMID:31999955
A New Weighted Imputed Neighborhood-Regularized Tri-Factorization One-Class Collaborative Filtering Algorithm: Application to Target Gene Prediction of Transcription Factors.
PMID:31995498
Towards a comprehensive catalogue of validated and target-linked human enhancers.
PMID:31988385
Tetranucleotide Microsatellite Mutational Behavior Assessed in Real Time: Implications for Future Microsatellite Panels.
PMID:31982570
Aberrantly High Levels of Somatic LINE-1 Expression and Retrotransposition in Human Neurological Disorders.
PMID:31969897
Worldwide carrier frequency and genetic prevalence of autosomal recessive inherited retinal diseases.
PMID:31964843
A potential new mechanism for pregnancy loss: considering the role of LINE-1 retrotransposons in early spontaneous miscarriage.
PMID:31964400
MicroRNAs in Vascular Eye Diseases.
PMID:31963809
In-Depth Mapping of the Urinary N-Glycoproteome: Distinct Signatures of ccRCC-related Progression.
PMID:31963743
Idiopathic Pulmonary Fibrosis: Pathogenesis and the Emerging Role of Long Non-Coding RNAs.
PMID:31947693
The Missing "lnc" between Genetics and Cardiac Disease.
PMID:31947625
The Developmental Gene Hypothesis for Punctuated Equilibrium: Combined Roles of Developmental Regulatory Genes and Transposable Elements.
PMID:31943266
A draft genome sequence of the elusive giant squid, Architeuthis dux.
PMID:31942620
Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters.
PMID:31938044
PP2A Phosphatases Take a Giant Leap in the Post-Genomics Era.
PMID:31929724
Cell-free DNA donor fraction analysis in pediatric and adult heart transplant patients by multiplexed allele-specific quantitative PCR: Validation of a rapid and highly sensitive clinical test for stratification of rejection probability.
PMID:31929557
How technical progress reshaped behavioral neuroendocrinology during the last 50 years… and some methodological remarks.
PMID:31927020
Comparative analysis on the expression of L1 loci using various RNA-Seq preparations.
PMID:31921361
A brief history of human disease genetics.
PMID:31915397
The p53 family reaches the final frontier: the variegated regulation of the dark matter of the genome by the p53 family in cancer.
PMID:31910062
Unzipping haplotypes in diploid and polyploid genomes.
PMID:31908732
Structural variant identification and characterization.
PMID:31907725
The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation.
PMID:31901448
Alpha-hemoglobin-stabilizing protein (AHSP): a modulatory factor in β-thalassemia.
PMID:31894534
LINE-1 ORF2p expression is nearly imperceptible in human cancers.
PMID:31892958
Targeted viral vector transduction of relaxin-3 neurons in the rat nucleus incertus using a novel cell-type specific promoter.
PMID:31890981
Long walk to genomics: History and current approaches to genome sequencing and assembly.
PMID:31890139
A re-evaluation of LINE-1 ORF2 expression in LNCaP prostate cancer cells.
PMID:31890047
Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation.
PMID:31886458
Immunotherapy and next-generation sequencing guided therapy for precision oncology: What have we learnt and what does the future hold?
PMID:31886407
B2 and ALU retrotransposons are self-cleaving ribozymes whose activity is enhanced by EZH2.
PMID:31871160
Epigenetic therapy of myelodysplastic syndromes connects to cellular differentiation independently of endogenous retroelement derepression.
PMID:31870430
A network embedding model for pathogenic genes prediction by multi-path random walking on heterogeneous network.
PMID:31865919
A unified STR profiling system across multiple species with whole genome sequencing data.
PMID:31861983
Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes.
PMID:31860668
Nucleotide composition of transposable elements likely contributes to AT/GC compositional homogeneity of teleost fish genomes.
PMID:31857829
Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology.
PMID:31853540
Novel human sex-typing strategies based on the autism candidate gene NLGN4X and its male-specific gametologue NLGN4Y.
PMID:31852540
Long non-coding RNAs in ovarian cancer: expression profile and functional spectrum.
PMID:31847695
Application of DArT seq derived SNP tags for comparative genome analysis in fishes; An alternative pipeline using sequence data from a non-traditional model species, Macquaria ambigua.
PMID:31830141
A primate-specific retroviral enhancer wires the XACT lncRNA into the core pluripotency network in humans.
PMID:31827084
Arteria: An automation system for a sequencing core facility.
PMID:31825479
TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model.
PMID:31824778
Targeted deep-intronic sequencing in a cohort of unexplained cases of suspected Lynch syndrome.
PMID:31822864
Glyoxalase 1 gene improves the antistress capacity and reduces the immune inflammatory response.
PMID:31822263
Evolutionary Forces and Codon Bias in Different Flavors of Intrinsic Disorder in the Human Proteome.
PMID:31820049
Nutritional Factors Modulating Alu Methylation in an Italian Sample from The Mark-Age Study Including Offspring of Healthy Nonagenarians.
PMID:31817660
Conversion of DNA Sequences: From a Transposable Element to a Tandem Repeat or to a Gene.
PMID:31817529
Pharmacogenomics In Pharmacy Practice: Current Perspectives.
PMID:31807435
Recapitulation-like developmental transitions of chromatin accessibility in vertebrates.
PMID:31807314
Endogenous Retroviruses Activity as a Molecular Signature of Neurodevelopmental Disorders.
PMID:31801288
Artificial intelligence for precision medicine in neurodevelopmental disorders.
PMID:31799421
Endogenous retroviruses are associated with hippocampus-based memory impairment.
PMID:31792184
High-throughput long paired-end sequencing of a Fosmid library by PacBio.
PMID:31788019
The Role of SINE-VNTR-Alu (SVA) Retrotransposons in Shaping the Human Genome.
PMID:31783611
Advances in genetics toward identifying pathogenic cell states of rheumatoid arthritis.
PMID:31782165
Sam68 binds Alu-rich introns in SMN and promotes pre-mRNA circularization.
PMID:31777926
GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs.
PMID:31776332
TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation.
PMID:31759822
Integrative genetic map of repetitive DNA in the sole Solea senegalensis genome shows a Rex transposon located in a proto-sex chromosome.
PMID:31748593
Role of Molecular Profiling of Pancreatic Cancer After Neoadjuvant Therapy: Does it Change Practice?
PMID:31745905
Snapshots of a genetic cut-and-paste.
PMID:31745352
Transposable element expression in tumors is associated with immune infiltration and increased antigenicity.
PMID:31745090
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.
PMID:31744855
Comparative genomic analysis of eutherian connexin genes.
PMID:31729432
Soluble PD-L1 generated by endogenous retroelement exaptation is a receptor antagonist.
PMID:31729316
[Mass spectrometry-applications in pathology].
PMID:31713660
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
PMID:31713622
Synthetic lethality as an engine for cancer drug target discovery.
PMID:31712683
X-ray Structures of the Post-fusion 6-Helix Bundle of the Human Syncytins and their Functional Implications.
PMID:31711961
Genetics of Childhood-onset Schizophrenia 2019 Update.
PMID:31708045
Dynamic DNA Energy Landscapes and Substrate Complexity in Triplet Repeat Expansion and DNA Repair.
PMID:31698848
Nature at 150: evidence in pursuit of truth.
PMID:31695220
Ensembl 2020.
PMID:31691826
A non-coding genetic variant associated with abdominal aortic aneurysm alters ERG gene regulation.
PMID:31691800
The Concomitant Expression of Human Endogenous Retroviruses and Embryonic Genes in Cancer Cells under Microenvironmental Changes is a Potential Target for Antiretroviral Drugs.
PMID:31691184
Recurrent intragenic exon rearrangements of SOBP and AUTS2 in non-Hodgkin B-cell lymphoma.
PMID:31686349
Roles of Topoisomerases in Heterochromatin, Aging, and Diseases.
PMID:31683993
Differential regulatory network-based quantification and prioritization of key genes underlying cancer drug resistance based on time-course RNA-seq data.
PMID:31682596
Widespread sex dimorphism in aging and age-related diseases.
PMID:31677133
The Many Faces of Gene Regulation in Cancer: A Computational Oncogenomics Outlook.
PMID:31671657
Innovating the Concept and Practice of Two-Dimensional Gel Electrophoresis in the Analysis of Proteomes at the Proteoform Level.
PMID:31671630
Protein Structural Information and Evolutionary Landscape by In Vitro Evolution.
PMID:31670785
Comprehensive Scanning Mutagenesis of Human Retrotransposon LINE-1 Identifies Motifs Essential for Function.
PMID:31666291
A 96-multiplex capillary electrophoresis screening platform for product based evolution of P450 BM3.
PMID:31664146
Human-specific tandem repeat expansion and differential gene expression during primate evolution.
PMID:31659027
Molecular determinants of drug response in TNBC cell lines.
PMID:31655920
Comparative Genomics Analysis Reveals High Levels of Differential Retrotransposition among Primates from the Hominidae and the Cercopithecidae Families.
PMID:31651947
Deep Learning Enables Accurate Prediction of Interplay Between lncRNA and Disease.
PMID:31649723
Retrotransposons spread potential cis-regulatory elements during mammary gland evolution.
PMID:31642473
DNA methylation of individual repetitive elements in hepatitis C virus infection-induced hepatocellular carcinoma.
PMID:31639042
Evolutionary history and classification of Micropia retroelements in Drosophilidae species.
PMID:31622354
Recovery of non-reference sequences missing from the human reference genome.
PMID:31619167
Five months of voluntary wheel running downregulates skeletal muscle LINE-1 gene expression in rats.
PMID:31618076
Children With Autism Spectrum Disorder and Their Mothers Share Abnormal Expression of Selected Endogenous Retroviruses Families and Cytokines.
PMID:31616420
Specification of the First Mammalian Cell Lineages In Vivo and In Vitro.
PMID:31615786
Changing expression profiles of lncRNAs, circRNAs and mRNAs in esophageal squamous carcinoma.
PMID:31612046
A Japanese history of the Human Genome Project.
PMID:31611500
Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development.
PMID:31608120
Introducing the first whole genomes of nationals from the United Arab Emirates.
PMID:31604968
On the Function of Trans-Splicing: No Evidence for Widespread Proteome Diversification in Trypanosomes.
PMID:31599940
Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.
PMID:31599933
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.
PMID:31599596
Retroelement-Linked H3K4me1 Histone Tags Uncover Regulatory Evolution Trends of Gene Enhancers and Feature Quickly Evolving Molecular Processes in Human Physiology.
PMID:31597351
Co-Localization of DNA i-Motif-Forming Sequences and 5-Hydroxymethyl-cytosines in Human Embryonic Stem Cells.
PMID:31597270
Lung genotoxicity of benzo(a)pyrene in vivo involves reactivation of LINE-1 retrotransposon and early reprogramming of oncogenic regulatory networks.
PMID:31596105
Functional Genomics of the Retina to Elucidate its Construction and Deconstruction.
PMID:31590277
Reporting on the future of integrative structural biology ORAU workshop.
PMID:31585877
Synonymous genome recoding: a tool to explore microbial biology and new therapeutic strategies.
PMID:31584076
Unraveling the Heterogeneous Mutational Signature of Spontaneously Developing Tumors in MLH1-/- Mice.
PMID:31581674
Break-induced replication plays a prominent role in long-range repeat-mediated deletion.
PMID:31571254
Up-regulation of ZFAS1 indicates dismal prognosis for cholangiocarcinoma and promotes proliferation and metastasis by modulating USF1 via miR-296-5p.
PMID:31565837
Adipose Tissue Gene Expression Associations Reveal Hundreds of Candidate Genes for Cardiometabolic Traits.
PMID:31564431
Discovery of Novel Sequences in 1,000 Swedish Genomes.
PMID:31560401
Large, three-generation human families reveal post-zygotic mosaicism and variability in germline mutation accumulation.
PMID:31549960
RNA ligation precedes the retrotransposition of U6/LINE-1 chimeric RNA.
PMID:31548405
RNA-seq as a tool for evaluating human embryo competence.
PMID:31548358
Dual-Specific Protein and Lipid Phosphatase PTEN and Its Biological Functions.
PMID:31548229
Chromosomal rearrangements as a source of new gene formation in Drosophila yakuba.
PMID:31545792
Chromosome-level assembly of the mustache toad genome using third-generation DNA sequencing and Hi-C analysis.
PMID:31544214
Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.
PMID:31537640
LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly.
PMID:31537638
Xist RNA in action: Past, present, and future.
PMID:31537017
Tracking the Fate of Endogenous Retrovirus Segregation in Wild and Domestic Cats.
PMID:31534037
Overlapping protein-coding genes in human genome and their coincidental expression in tissues.
PMID:31527706
The first enhancer in an enhancer chain safeguards subsequent enhancer-promoter contacts from a distance.
PMID:31514731
SKF-LDA: Similarity Kernel Fusion for Predicting lncRNA-Disease Association.
PMID:31514111
Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment.
PMID:31513617
Mechanisms of nuclear mRNA export: A structural perspective.
PMID:31513326
Current Trends in Applications of Circulatory Microchimerism Detection in Transplantation.
PMID:31509957
The Evolving Field of Genetic Epidemiology: From Familial Aggregation to Genomic Sequencing.
PMID:31509181
Socioeconomic status and DNA methylation from birth through mid-childhood: a prospective study in Project Viva.
PMID:31509016
5-Azacytidine modulates CpG methylation levels of EZH2 and NOTCH1 in myelodysplastic syndromes.
PMID:31506740
SNV identification from single-cell RNA sequencing data.
PMID:31504520
Detection of Microsatellite Instability Biomarkers via Next-Generation Sequencing.
PMID:31502149
The NIH Common Fund/Roadmap Epigenomics Program: Successes of a comprehensive consortium.
PMID:31501771
Whole Genome Analyses of Chinese Population and De Novo Assembly of A Northern Han Genome.
PMID:31494266
Functional disease architectures reveal unique biological role of transposable elements.
PMID:31492842
Retrotransposon insertions can initiate colorectal cancer and are associated with poor survival.
PMID:31492840
A novel evolutionary model for constructing gene coexpression networks with comprehensive features.
PMID:31492104
H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 Histone Tags Suggest Distinct Regulatory Evolution of Open and Condensed Chromatin Landmarks.
PMID:31491936
Food Safety and Nutraceutical Potential of Caramel Colour Class IV Using In Vivo and In Vitro Assays.
PMID:31491925
Expanding the scope and scale of microbiome research.
PMID:31488207
An LTR retrotransposon-derived lncRNA interacts with RNF169 to promote homologous recombination.
PMID:31486214
Clinical value of non-coding RNAs in cardiovascular, pulmonary, and muscle diseases.
PMID:31483703
Transposable Elements, Inflammation, and Neurological Disease.
PMID:31481926
Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays.
PMID:31481462
The Length of the Expressed 3' UTR Is an Intermediate Molecular Phenotype Linking Genetic Variants to Complex Diseases.
PMID:31475030
Dynamical Electrical Complexity Is Reduced during Neuronal Differentiation in Autism Spectrum Disorder.
PMID:31474529
Accumulation of Circulating Cell-Free CpG-Enriched Ribosomal DNA Fragments on the Background of High Endonuclease Activity of Blood Plasma in Schizophrenic Patients.
PMID:31467866
Emerging epigenomic landscapes of pancreatic cancer in the era of precision medicine.
PMID:31462645
A concise review of human brain methylome during aging and neurodegenerative diseases.
PMID:31462381
β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library.
PMID:31453223
Intrauterine programming of obesity and type 2 diabetes.
PMID:31451874
Chromosomics: Bridging the Gap between Genomes and Chromosomes.
PMID:31434289
The lncRNA Malat1 functions as a ceRNA to contribute to berberine-mediated inhibition of HMGB1 by sponging miR-181c-5p in poststroke inflammation.
PMID:31431734
Identification of mutations in HEXA and HEXB in Sandhoff and Tay-Sachs diseases: a new large deletion caused by Alu elements in HEXA.
PMID:31428437
Investigation of NF-κB-94ins/del ATTG and CARD8 (rs2043211) Gene Polymorphism in Acute Lymphoblastic Leukemia.
PMID:31428046
TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements.
PMID:31425522
Transposable element-mediated structural variation analysis in dog breeds using whole-genome sequencing.
PMID:31414176
Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function.
PMID:31413151
Increased HERV-E clone 4-1 expression contributes to DNA hypomethylation and IL-17 release from CD4+ T cells via miR-302d/MBD2 in systemic lupus erythematosus.
PMID:31412880
Biophysics and the Genomic Sciences.
PMID:31409480
A Long Polymorphic GT Microsatellite within a Gene Promoter Mediates Non-Imprinted Allele-Specific DNA Methylation of a CpG Island in a Goldfish Inter-Strain Hybrid.
PMID:31409051
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
PMID:31406327
ADAR1: "Editor-in-Chief" of Cytoplasmic Innate Immunity.
PMID:31404141
Is it time to change the reference genome?
PMID:31399121
Dietary Patterns are Associated with Leukocyte LINE-1 Methylation in Women: A Cross-Sectional Study in Southern Italy.
PMID:31395820
A Genome Model to Explain Major Features of Neurodevelopmental Disorders in Newborns.
PMID:31391780
ARID1A and PI3-kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion.
PMID:31391455
Correlation of long interspersed element-1 open reading frame 1 and c-Met proto-oncogene protein expression in ovarian cancer.
PMID:31388980
Transmissible Cancers and Immune Downregulation in Tasmanian Devil (Sacrophilus harrisii) and Canine Populations.
PMID:31387668
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
PMID:31375807
Patterns of conservation of spliceosomal intron structures and spliceosome divergence in representatives of the diplomonad and parabasalid lineages.
PMID:31375061
Diseases of the nERVous system: retrotransposon activity in neurodegenerative disease.
PMID:31372185
Rare and common variant discovery in complex disease: the IBD case study.
PMID:31363759
Endogenous Retrovirus-Derived Long Noncoding RNA Enhances Innate Immune Responses via Derepressing RELA Expression.
PMID:31363026
Microsatellite Marker Analysis for Laboratory Mice Profiling.
PMID:31360681
AluMine: alignment-free method for the discovery of polymorphic Alu element insertions.
PMID:31360240
FERMI: A Novel Method for Sensitive Detection of Rare Mutations in Somatic Tissue.
PMID:31352405
High Prevalence and Disease Correlation of Autoantibodies Against p40 Encoded by Long Interspersed Nuclear Elements in Systemic Lupus Erythematosus.
PMID:31342656
Human APOBEC3G Prevents Emergence of Infectious Endogenous Retrovirus in Mice.
PMID:31341050
Heterogeneous transposable elements as silencers, enhancers and targets of meiotic recombination.
PMID:31332531
Non-cell autonomous mechanism of Parkinson's disease pathology caused by G2019S LRRK2 mutation in Ashkenazi Jewish patient: Single cell analysis.
PMID:31330122
Repeat-associated RNA structure and aberrant splicing.
PMID:31323433
Identifying causal variants and genes using functional genomics in specialized cell types and contexts.
PMID:31317254
An Evaluation of Machine Learning Approaches for the Prediction of Essential Genes in Eukaryotes Using Protein Sequence-Derived Features.
PMID:31312416
GC content of vertebrate exome landscapes reveal areas of accelerated protein evolution.
PMID:31311498
Fast and accurate medication identification.
PMID:31304359
Sleeping beauty genetic screen identifies miR-23b::BTBD7 gene interaction as crucial for colorectal cancer metastasis.
PMID:31303496
Non-Coding RNAs and their Integrated Networks.
PMID:31301674
Discovery of receptor-ligand interfaces in the immunoglobulin superfamily.
PMID:31298437
Transposable Elements and Their Epigenetic Regulation in Mental Disorders: Current Evidence in the Field.
PMID:31293617
Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data.
PMID:31289836
Alu RNA Modulates the Expression of Cell Cycle Genes in Human Fibroblasts.
PMID:31284509
Brain organoids and insights on human evolution.
PMID:31275562
Mode and Tempo of Microsatellite Length Change in a Malaria Parasite Mutation Accumulation Experiment.
PMID:31273388
Genetic Variation, Comparative Genomics, and the Diagnosis of Disease.
PMID:31269367
Dynamic expression of tRNA-derived small RNAs define cellular states.
PMID:31267708
Centralized scientific communities are less likely to generate replicable results.
PMID:31264964
LLCLPLDA: a novel model for predicting lncRNA-disease associations.
PMID:31250107
Molecular Mechanisms and Determinants of Innovative Correction Approaches in Coagulation Factor Deficiencies.
PMID:31234407
Construction of JRG (Japanese reference genome) with single-molecule real-time sequencing.
PMID:31231536
New pathologic mechanisms in nucleotide repeat expansion disorders.
PMID:31229686
SIRT7 mediates L1 elements transcriptional repression and their association with the nuclear lamina.
PMID:31226208
The role of hydrophobic matching on transmembrane helix packing in cells.
PMID:31225439
Exome Sequencing in Clinical Hepatology.
PMID:31222768
Expression of GCRG213p, LINE-1 endonuclease variant, significantly different in gastric complete and incomplete intestinal metaplasia.
PMID:31221180
Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths.
PMID:31214686
RNA-protein interactions: disorder, moonlighting and junk contribute to eukaryotic complexity.
PMID:31213136
Genetic and Epigenetic Fine Mapping of Complex Trait Associated Loci in the Human Liver.
PMID:31204013
The Hunt for Degrons of the 26S Proteasome.
PMID:31200568
Identification of a Retroelement-Containing Human Transcript Induced in the Nucleus by Vaccination.
PMID:31200438
Using phenome-wide association studies to examine the effect of environmental exposures on human health.
PMID:31200158
Early life exposures, neurodevelopmental disorders, and transposable elements.
PMID:31193573
Patterns in the genome.
PMID:31189906
Genome sequencing-the dawn of a game-changing era.
PMID:31189904
The Potential Role of Genomic Medicine in the Therapeutic Management of Rheumatoid Arthritis.
PMID:31185701
Jérôme Lejeune passed away 25 years ago.
PMID:31182939
CFIm25 and alternative polyadenylation: Conflicting roles in cancer.
PMID:31181319
Novel de novo frameshift variant in the ASXL3 gene in a child with microcephaly and global developmental delay.
PMID:31180560
Mechanisms of genome evolution in Candida albicans.
PMID:31176092
Translational Metabolomics: Current Challenges and Future Opportunities.
PMID:31174372
First Responder to Genomic Information: A Guide for Primary Care Providers.
PMID:31172371
Characterization of bovine (Bos taurus) imprinted genes from genomic to amino acid attributes by data mining approaches.
PMID:31170205
Misassembly of long reads undermines de novo-assembled ethnicity-specific genomes: validation in a Chinese Han population.
PMID:31168775
Modern technologies and algorithms for scaffolding assembled genomes.
PMID:31166948
WashU Epigenome Browser update 2019.
PMID:31165883
Human protein-coding genes and gene feature statistics in 2019.
PMID:31164174
Negative regulation of miR-1275 by H3K27me3 is critical for glial induction of glioblastoma cells.
PMID:31162799
Emerging roles of histone modifications and HDACs in RNA splicing.
PMID:31162605
LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo.
PMID:31159720
RNA Next-Generation Sequencing and a Bioinformatics Pipeline to Identify Expressed LINE-1s at the Locus-Specific Level.
PMID:31157783
The Potential for microRNA Therapeutics and Clinical Research.
PMID:31156715
Variable Baseline Papio cynocephalus Endogenous Retrovirus (PcEV) Expression Is Upregulated in Acutely SIV-Infected Macaques and Correlated to STAT1 Expression in the Spleen.
PMID:31156613
ERCC1/XPF Is Important for Repair of DNA Double-Strand Breaks Containing Secondary Structures.
PMID:31153042
Expression dynamics of repetitive DNA in early human embryonic development.
PMID:31151386
Health Disparities and Sepsis: a Systematic Review and Meta-Analysis on the Influence of Race on Sepsis-Related Mortality.
PMID:31144133
Genomics and data science: an application within an umbrella.
PMID:31142351
The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.
PMID:31139867
Tracing the history of LINE and SINE extinction in sigmodontine rodents.
PMID:31139266
Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation.
PMID:31135340
Long noncoding-RNA component of mitochondrial RNA processing endoribonuclease is involved in the progression of cholangiocarcinoma by regulating microRNA-217.
PMID:31111617
Population genetic data of 20 insertion-null allele markers in the Andalusian population.
PMID:31111220
An ATAC-seq atlas of chromatin accessibility in mouse tissues.
PMID:31110271
MERMAID: dedicated web server to prepare and run coarse-grained membrane protein dynamics.
PMID:31106328
Molecular pattern of lncRNAs in hepatocellular carcinoma.
PMID:31097003
Determination and analysis of agonist and antagonist potential of naturally occurring flavonoids for estrogen receptor (ERα) by various parameters and molecular modelling approach.
PMID:31092862
c-Myc induced the regulation of long non-coding RNA RHPN1-AS1 on breast cancer cell proliferation via inhibiting P53.
PMID:31089812
In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survival.
PMID:31089191
ULTRA: A Model Based Tool to Detect Tandem Repeats.
PMID:31080962
Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs.
PMID:31080521
Recognition of 3'-end L1, Alu, processed pseudogenes, and mRNA stem-loops in the human genome using sequence-based and structure-based machine-learning models.
PMID:31076573
Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population.
PMID:31072070
De novo emergence and potential function of human-specific tandem repeats in brain-related loci.
PMID:31069507
Humans and Chimpanzees Display Opposite Patterns of Diversity in Arylamine N-Acetyltransferase Genes.
PMID:31068377
Composite Analysis of the Virome and Bacteriome of HIV/HPV Co-Infected Women Reveals Proxies for Immunodeficiency.
PMID:31067713
Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution.
PMID:31064091
Target Gene Prediction of Transcription Factor Using a New Neighborhood-regularized Tri-factorization One-class Collaborative Filtering Algorithm.
PMID:31061989
Emergence of the Dedifferentiated Phenotype in Hepatocyte-Derived Tumors in Mice: Roles of Oncogene-Induced Epigenetic Alterations.
PMID:31061957
Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines.
PMID:31061680
Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus).
PMID:31060501
Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation.
PMID:31058854
Systems biology in inflammatory bowel diseases: on the way to precision medicine.
PMID:31040620
What viruses tell us about evolution and immunity: beyond Darwin?
PMID:31032941
Dissecting Motor Neuron Disease With Drosophila melanogaster.
PMID:31031583
DeePromoter: Robust Promoter Predictor Using Deep Learning.
PMID:31024615
Gene Lifestyle Interactions With Relation to Obesity, Cardiometabolic, and Cardiovascular Traits Among South Asians.
PMID:31024458
The impact of poly-A microsatellite heterologies in meiotic recombination.
PMID:31023833
Prediction of Human Immunodeficiency Virus Type 1 Subtype-Specific Off-Target Effects Arising from CRISPR-Cas9 Gene Editing Therapy.
PMID:31021222
Impact of Genetic Variation on CRISPR-Cas Targeting.
PMID:31021199
Genetic Variations and Precision Medicine.
PMID:31019429
Sequencing of human genomes with nanopore technology.
PMID:31015479
Mouse germ line mutations due to retrotransposon insertions.
PMID:31011371
miR-128 Restriction of LINE-1 (L1) Retrotransposition Is Dependent on Targeting hnRNPA1 mRNA.
PMID:31010097
ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing.
PMID:31010074
Subtype classification and functional annotation of L1Md retrotransposon promoters.
PMID:31007728
Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.
PMID:31007525
Long Noncoding RNA and Epithelial Mesenchymal Transition in Cancer.
PMID:31003545
Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.
PMID:31000506
The Many Faces of EpigeneticsOxford, December 2017.
PMID:30994386
Protein Structure-Guided Hidden Markov Models (HMMs) as A Powerful Method in the Detection of Ancestral Endogenous Viral Elements.
PMID:30986983
HERVs, immunity, and autoimmunity: understanding the connection.
PMID:30984482
Evidence for ligandable sites in structured RNA throughout the Protein Data Bank.
PMID:30982658
Large-scale 3D chromatin reconstruction from chromosomal contacts.
PMID:30967119
A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side.
PMID:30967116
Small molecule targeting of RNA structures in neurological disorders.
PMID:30964958
Genetic and epigenetic sex-specific adaptations to endurance exercise.
PMID:30957644
Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication.
PMID:30955886
Detailed methylation map of LINE-1 5'-promoter region reveals hypomethylated CpG hotspots associated with tumor tissue specificity.
PMID:30955237
One hundred years of Drosophila cancer research: no longer in solitude.
PMID:30952627
A Pipeline for Faecal Host DNA Analysis by Absolute Quantification of LINE-1 and Mitochondrial Genomic Elements Using ddPCR.
PMID:30944341
Mendelian Inconsistent Signatures from 1314 Ancestrally Diverse Family Trios Distinguish Biological Variation from Sequencing Error.
PMID:30942611
Viruses and Evolution - Viruses First? A Personal Perspective.
PMID:30941110
Regulatory Non-coding RNAs Network in Non-alcoholic Fatty Liver Disease.
PMID:30941061
Discovery of Teneurins.
PMID:30941006
On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses.
PMID:30935103
Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer.
PMID:30934003
BZLF1 interacts with chromatin remodelers promoting escape from latent infections with EBV.
PMID:30926617
The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution.
PMID:30918947
Overlooked: Extrachromosomal DNA and Their Possible Impact on Whole Genome Sequencing.
PMID:30918452
Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes?
PMID:30917603
GenomeWarp: an alignment-based variant coordinate transformation.
PMID:30916319
Repeat-Associated Non-ATG Translation: Molecular Mechanisms and Contribution to Neurological Disease.
PMID:30909783
SMARCAD1 ATPase activity is required to silence endogenous retroviruses in embryonic stem cells.
PMID:30902974
Functional roles of the human ribonuclease A superfamily in RNA metabolism and membrane receptor biology.
PMID:30902663
Nutrigenomics of Vitamin D.
PMID:30901909
The impact of transposable element activity on therapeutically relevant human stem cells.
PMID:30899334
Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome.
PMID:30899333
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.
PMID:30894839
Predicting mutations deleterious to function in beta-lactamase TEM1 using MM-GBSA.
PMID:30889230
Amplification Dynamics of Platy-1 Retrotransposons in the Cebidae Platyrrhine Lineage.
PMID:30888417
Primate piRNA Cluster Evolution Suggests Limited Relevance of Pseudogenes in piRNA-Mediated Gene Regulation.
PMID:30888404
Long Noncoding RNA and Protein Interactions: From Experimental Results to Computational Models Based on Network Methods.
PMID:30875752
Glass confers rhabdomeric photoreceptor identity in Drosophila, but not across all metazoans.
PMID:30873275
Similarities and differences between variants called with human reference genome HG19 or HG38.
PMID:30871461
Synthetic Lethality in Lung Cancer-From the Perspective of Cancer Genomics.
PMID:30871030
Increased Transfection of the Easily Oxidizable GC-Rich DNA Fragments into the MCF7 Breast Cancer Cell.
PMID:30867888
A comparative survey of microsatellites among wild and domestic cat provides valuable resources for marker development.
PMID:30864111
KMT1 family methyltransferases regulate heterochromatin-nuclear periphery tethering via histone and non-histone protein methylation.
PMID:30858340
Translating Pharmacogenetics and Pharmacogenomics to the Clinic: Progress in Human and Veterinary Medicine.
PMID:30854372
Recent Progress of Polymeric Nanogels for Gene Delivery.
PMID:30853837
LINE1 Derepression in Aged Wild-Type and SIRT6-Deficient Mice Drives Inflammation.
PMID:30853213
DNMT1 in Six2 Progenitor Cells Is Essential for Transposable Element Silencing and Kidney Development.
PMID:30850438
2018 William Allan Award: Discovering the Genes for Common Disease: From Families to Populations.
PMID:30849323
A novel nonsense variant in SUPT20H gene associated with Rheumatoid Arthritis identified by Whole Exome Sequencing of multiplex families.
PMID:30845214
Potential Implications of Long Noncoding RNAs in Autoimmune Diseases.
PMID:30838159
From Desert to Medicine: A Review of Camel Genomics and Therapeutic Products.
PMID:30838017
Tropomyosins: Potential Biomarkers for Urothelial Bladder Cancer.
PMID:30836651
Endogenous double-stranded Alu RNA elements stimulate IFN-responses in relapsing remitting multiple sclerosis.
PMID:30826177
Mapping the dsRNA World.
PMID:30824577
Epigenetic changes during aging and their reprogramming potential.
PMID:30822165
Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data.
PMID:30821816
Metabolic therapies inhibit tumor growth in vivo and in silico.
PMID:30816152
On the length, weight and GC content of the human genome.
PMID:30813969
Insights into DNA polymerase δ's mechanism for accurate DNA replication.
PMID:30810803
In-depth structural analysis of glycans in the gas phase.
PMID:30809341
Circular RNAs in immune responses and immune diseases.
PMID:30809295
Logic Regression Analysis of Gene Polymorphisms and HDL Levels in a Nationally Representative Sample of Iranian Adolescents: The CASPIAN-III Study.
PMID:30805016
Discrimination Between Self and Non-Self-Nucleic Acids by the Innate Immune System.
PMID:30798985
Cohort profile: design and methods in the eye and vision consortium of UK Biobank.
PMID:30796124
Completing the genetic spectrum influencing coronary artery disease: from germline to somatic variation.
PMID:30789660
Prostate-specific loss of UXT promotes cancer progression.
PMID:30774773
Motor neuron disease-associated loss of nuclear TDP-43 is linked to DNA double-strand break repair defects.
PMID:30770445
Endogenous Retroviruses Function as Gene Expression Regulatory Elements During Mammalian Pre-implantation Embryo Development.
PMID:30759824
[Breakthrough in understanding the molecular causes of psychiatric disorders].
PMID:30758637
Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics.
PMID:30739867
Retroelement-Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution.
PMID:30736359
Precision epidemiology for infectious disease control.
PMID:30728537
Estimation of duplication history under a stochastic model for tandem repeats.
PMID:30727948
Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory.
PMID:30723266
Profiling of LINE-1-Related Genes in Hepatocellular Carcinoma.
PMID:30717368
Deficiency of the Fanconi anemia E2 ubiqitin conjugase UBE2T only partially abrogates Alu-mediated recombination in a new model of homology dependent recombination.
PMID:30715513
The Lupus Susceptibility Locus Sgp3 Encodes the Suppressor of Endogenous Retrovirus Expression SNERV.
PMID:30709743
Identification of human endogenous retrovirus transcripts in Hodgkin Lymphoma cells.
PMID:30707417
Novel Discovery of LINE-1 in a Korean Individual by a Target Enrichment Method.
PMID:30699287
Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation.
PMID:30692270
ensembldb: an R package to create and use Ensembl-based annotation resources.
PMID:30689724
Whole genome sequencing of breast cancer.
PMID:30689231
A re-annotation of the Anopheles darlingi mobilome.
PMID:30672977
Where is genomics going next?
PMID:30670080
Characterizing the Major Structural Variant Alleles of the Human Genome.
PMID:30661756
Mouse PVRIG Has CD8+ T Cell-Specific Coinhibitory Functions and Dampens Antitumor Immunity.
PMID:30659055
Methylation of LINE-1 in cell-free DNA serves as a liquid biopsy biomarker for human breast cancers and dog mammary tumors.
PMID:30655558
Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription.
PMID:30652128
Functional Interplay between RNA Viruses and Non-Coding RNA in Mammals.
PMID:30646609
SQuIRE reveals locus-specific regulation of interspersed repeat expression.
PMID:30624635
Growth factor signalling in osteoarthritis.
PMID:30624091
Regulation of LINE-1 Elements by miR-128 Is Not Conserved in Mouse Embryonic Stem Cells.
PMID:30619491
Single-Cell Applications of Next-Generation Sequencing.
PMID:30617056
Expressional activation and functional roles of human endogenous retroviruses in cancers.
PMID:30614117
Revealing the alternative promoter usage of SAF/MAZ gene by bichromatic fluorescent reporter construct.
PMID:30610159
Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure.
PMID:30609992
Transcription of human endogenous retroviruses in human brain by RNA-seq analysis.
PMID:30605476
A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases.
PMID:30597923
Prolonged neuromuscular block associated with cholinesterase deficiency.
PMID:30593143
The ACCOuNT Consortium: A Model for the Discovery, Translation, and Implementation of Precision Medicine in African Americans.
PMID:30592548
BC200 RNA: An Emerging Therapeutic Target and Diagnostic Marker for Human Cancer.
PMID:30590906
Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers.
PMID:30588513
Next-generation sequencing of circulating tumor DNA for detection of gene mutations in lung cancer: implications for precision treatment.
PMID:30588023
Non-Coding RNAs in Glioma.
PMID:30583549
RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes.
PMID:30583062
LINE-1 and EPAS1 DNA methylation associations with high-altitude exposure.
PMID:30574831
Variation in proviral content among human genomes mediated by LTR recombination.
PMID:30568734
Accounting for heteroscedasticity and censoring in chromosome partitioning analyses.
PMID:30564443
Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools.
PMID:30561434
Long-read sequence and assembly of segmental duplications.
PMID:30559433
Prolactin-induced protein (PIP)-characterization and role in breast cancer progression.
PMID:30555735
Long Interspersed Nuclear Element 1 Retrotransposons Become Deregulated during the Development of Ovarian Cancer Precursor Lesions.
PMID:30553834
A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity.
PMID:30547805
Genomic Interventions in Medicine.
PMID:30546257
Global long terminal repeat activation participates in establishing the unique gene expression programme of classical Hodgkin lymphoma.
PMID:30546079
Repetitive Fragile Sites: Centromere Satellite DNA As a Source of Genome Instability in Human Diseases.
PMID:30544645
Facial Sadness Recognition is Modulated by Estrogen Receptor Gene Polymorphisms in Healthy Females.
PMID:30544539
Novel three‑lncRNA signature predicts survival in patients with pancreatic cancer.
PMID:30542694
The translation of non-canonical open reading frames controls mucosal immunity.
PMID:30542152
Structure, clustering and functional insights of repeats configurations in the upstream promoter region of the human coding genes.
PMID:30537933
Evolution of Our Understanding of the Hyperparathyroid Syndromes: A Historical Perspective.
PMID:30536424
Evolution of the Yeast Recombination Landscape.
PMID:30535029
Multi-level remodeling of transcriptional landscapes in aging and longevity.
PMID:30526773
Deletion of the murine ortholog of the 8q24 gene desert has anti-cancer effects in transgenic mammary cancer models.
PMID:30526553
Sense of Smell: Structural, Functional, Mechanistic Advancements and Challenges in Human Olfactory Research.
PMID:30520376
DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal and Differentiation.
PMID:30518531
Genomic Takeover by Transposable Elements in the Strawberry Poison Frog.
PMID:30517748
Centromere-associated protein E expresses a novel mRNA isoform in acute lymphoblastic leukemia.
PMID:30515258
Tracking microRNA Processing Signals by Degradome Sequencing Data Analysis.
PMID:30487815
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.
PMID:30486838
Retrotransposon insertion as a novel mutational event in Bardet-Biedl syndrome.
PMID:30484961
Personal Genome Project UK (PGP-UK): a research and citizen science hybrid project in support of personalized medicine.
PMID:30482208
Next-Generation Sequencing Technologies.
PMID:30478097
Future Promises and Concerns of Ubiquitous Next-Generation Sequencing.
PMID:30478095
Deep repeat resolution-the assembly of the Drosophila Histone Complex.
PMID:30476267
Amphioxus functional genomics and the origins of vertebrate gene regulation.
PMID:30464347
The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018.
PMID:30460993
Research progresses in roles of LncRNA and its relationships with breast cancer.
PMID:30459529
Mendelian Randomization Studies Promise to Shorten the Journey to FDA Approval.
PMID:30456340
Assembly of a pan-genome from deep sequencing of 910 humans of African descent.
PMID:30455414
ERVmap analysis reveals genome-wide transcription of human endogenous retroviruses.
PMID:30455304
Testing the retroelement invasion hypothesis for the emergence of the ancestral eukaryotic cell.
PMID:30455297
Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions.
PMID:30455182
MiteFinderII: a novel tool to identify miniature inverted-repeat transposable elements hidden in eukaryotic genomes.
PMID:30453969
PAVOOC: designing CRISPR sgRNAs using 3D protein structures and functional domain annotations.
PMID:30445568
Sendai Virus Infection Induces Expression of Novel RNAs in Human Cells.
PMID:30429577
Exploring the Impact of Single-Nucleotide Polymorphisms on Translation.
PMID:30425729
One Major Challenge of Sequencing Large Plant Genomes Is to Know How Big They Really Are.
PMID:30423889
A fast adaptive algorithm for computing whole-genome homology maps.
PMID:30423094
Next-Generation Sequencing in Autism Spectrum Disorder.
PMID:30420340
Ethanol and a rapid-acting antidepressant produce overlapping changes in exon expression in the synaptic transcriptome.
PMID:30419244
Alu insertion variants alter mRNA splicing.
PMID:30418605
Conserved Pbp1/Ataxin-2 regulates retrotransposon activity and connects polyglutamine expansion-driven protein aggregation to lifespan-controlling rDNA repeats.
PMID:30417124
Roles of Smads Family and Alternative Splicing Variants of Smad4 in Different Cancers.
PMID:30410607
AFLP-AFLP in silico-NGS approach reveals polymorphisms in repetitive elements in the malignant genome.
PMID:30408048
Comparative genomics of the major parasitic worms.
PMID:30397333
High-complexity regions in mammalian genomes are enriched for developmental genes.
PMID:30395202
The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project.
PMID:30390178
The influence of Neanderthal alleles on cytotoxic response.
PMID:30386687
ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data.
PMID:30384854
LTRs activated by Epstein-Barr virus-induced transformation of B cells alter the transcriptome.
PMID:30381291
A large-scale analysis of bioinformatics code on GitHub.
PMID:30379882
QTL mapping of natural variation reveals that the developmental regulator bruno reduces tolerance to P-element transposition in the Drosophila female germline.
PMID:30376574
Impact of somatic and germline mutations on the outcome of systemic mastocytosis.
PMID:30373888
Regulation of DNA Double-Strand Break Repair by Non-Coding RNAs.
PMID:30373256
Identification of recurrent and novel mutations by whole‑genome sequencing of colorectal tumors from the Han population in Shanghai, eastern China.
PMID:30365144
Atypical Parkinsonism-Dystonia Syndrome Caused by a Novel DJ1 Mutation.
PMID:30363821
The Decrease in Human Endogenous Retrovirus-H Activity Runs in Parallel with Improvement in ADHD Symptoms in Patients Undergoing Methylphenidate Therapy.
PMID:30360480
Transposable Elements in the Organization and Diversification of the Genome of Aegilops speltoides Tausch (Poaceae, Triticeae).
PMID:30356408
LncRNA HOTAIR regulates lipopolysaccharide-induced cytokine expression and inflammatory response in macrophages.
PMID:30353135
A reference haplotype panel for genome-wide imputation of short tandem repeats.
PMID:30353011
Prolonged Idasanutlin (RG7388) Treatment Leads to the Generation of p53-Mutated Cells.
PMID:30352966
Targeted genotyping of variable number tandem repeats with adVNTR.
PMID:30352806
DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements.
PMID:30352618
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.
PMID:30352610
Antiviral resistance of stem cells.
PMID:30352329
Inhibition of LINE-1 Retrotransposition by Capsaicin.
PMID:30347711
De novo assembly of haplotype-resolved genomes with trio binning.
PMID:30346939
Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads.
PMID:30346553
Chromosome assembly of large and complex genomes using multiple references.
PMID:30341161
Special Issue Introduction: The Wonders and Mysteries Next Generation Sequencing Technologies Help Reveal.
PMID:30340386
A new approach based on targeted pooled DNA sequencing identifies novel mutations in patients with Inherited Retinal Dystrophies.
PMID:30337596
Human SETMAR is a DNA sequence-specific histone-methylase with a broad effect on the transcriptome.
PMID:30329085
Biased antagonism of CXCR4 avoids antagonist tolerance.
PMID:30327409
Next-Generation Sequencing Strategies.
PMID:30323017
Single-nucleotide variants in human RNA: RNA editing and beyond.
PMID:30312373
PTB/nPTB: master regulators of neuronal fate in mammals.
PMID:30310857
Colocalization analyses of genomic elements: approaches, recommendations and challenges.
PMID:30307532
De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data.
PMID:30304863
Rapid Expansion of a Highly Germline-Expressed Mariner Element Acquired by Horizontal Transfer in the Fire Ant Genome.
PMID:30304394
Crystallography and Its Impact on Carbonic Anhydrase Research.
PMID:30302289
Loss of pyruvate kinase M2 limits growth and triggers innate immune signaling in endothelial cells.
PMID:30301887
The placenta goes viral: Retroviruses control gene expression in pregnancy.
PMID:30300353
Combinatorial Approach for Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders.
PMID:30297454
Assessment of Resistance to Tyrosine Kinase Inhibitors by an Interrogation of Signal Transduction Pathways by Antibody Arrays.
PMID:30295648
ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching.
PMID:30295032
Multiple serine transposase dimers assemble the transposon-end synaptic complex during IS607-family transposition.
PMID:30289389
An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas.
PMID:30283979
Development of an AmpliSeqTM Panel for Next-Generation Sequencing of a Set of Genetic Predictors of Persisting Pain.
PMID:30283335
Functional intronic variant of SLC5A10 affects DRG2 expression and survival outcomes of early-stage non-small-cell lung cancer.
PMID:30281872
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.
PMID:30275530
NMD-degradome sequencing reveals ribosome-bound intermediates with 3'-end non-templated nucleotides.
PMID:30275517
PARP1 activation increases expression of modified tumor suppressors and pathways underlying development of aggressive hepatoblastoma.
PMID:30271949
Progress of analytical tools and techniques for human gut microbiome research.
PMID:30267313
Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000.
PMID:30265449
Genomics research in Africa and its impact on global health: insights from African researchers.
PMID:30263136
Multi-objective optimized genomic breeding strategies for sustainable food improvement.
PMID:30262841
Non-coding RNA in Ischemic and Non-ischemic Cardiomyopathy.
PMID:30259174
Epigenetic Effects of Drugs of Abuse.
PMID:30257440
Noncoding RNAs as therapeutic targets in early stage diabetic kidney disease.
PMID:30254844
Human Endogenous Retroviruses Are Ancient Acquired Elements Still Shaping Innate Immune Responses.
PMID:30250470
Data-Driven Exploration of Selectivity and Off-Target Activities of Designated Chemical Probes.
PMID:30249057
Personalised Medicine: The Odyssey from Hope to Practice.
PMID:30248964
Influenza Virus-Host Co-evolution. A Predator-Prey Relationship?
PMID:30245689
Genomic approaches for studying crop evolution.
PMID:30241487
Prolonged DNA hydrolysis in water: A study on DNA stability.
PMID:30238033
A Global Overview of Precision Medicine in Type 2 Diabetes.
PMID:30237159
Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance.
PMID:30236109
Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.
PMID:30227846
Genomics, bio specimens, and other biological data: Current status and future directions.
PMID:30226926
Association between Polymorphisms of Antioxidant Gene (MnSOD, CAT, and GPx1) and Risk of Coronary Artery Disease.
PMID:30225256
Reviving a 60 million year old LINE-1 element.
PMID:30221208
Repeat-associated non-ATG (RAN) translation.
PMID:30213863
Functional Evolution of Avian RIG-I-Like Receptors.
PMID:30213147
Somatic Mutagenesis in Mammals and Its Implications for Human Disease and Aging.
PMID:30212236
Impacts of bisphenol A (BPA) and phthalate exposures on epigenetic outcomes in the human placenta.
PMID:30210810
Whole genome sequencing data for two individuals of Pakistani descent.
PMID:30204152
Finding Nemo's Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula.
PMID:30203521
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms.
PMID:30202060
Transposons, p53 and Genome Security.
PMID:30195581
Early Behavioral Alterations and Increased Expression of Endogenous Retroviruses Are Inherited Across Generations in Mice Prenatally Exposed to Valproic Acid.
PMID:30194517
Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.
PMID:30189101
Genomes for all.
PMID:30188541
Non-coding RNAs in retinal development and function.
PMID:30187163
Pairs of Adjacent Conserved Noncoding Elements Separated by Conserved Genomic Distances Act as Cis-Regulatory Units.
PMID:30184074
Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata.
PMID:30184067
From Molecules to Mechanisms: Functional Proteomics and Its Application to Renal Tubule Physiology.
PMID:30182799
What Are 3' UTRs Doing?
PMID:30181377
The Xenopus animal cap transcriptome: building a mucociliary epithelium.
PMID:30165493
Molecular functions and specific roles of circRNAs in the cardiovascular system.
PMID:30159442
Circular RNAs in the cardiovascular system.
PMID:30159434
Non-coding RNAs in skeletal muscle regeneration.
PMID:30159421
MinION rapid sequencing: Review of potential applications in neurosurgery.
PMID:30159201
Alternative splicing of the Caenorhabditis elegans lev-11 tropomyosin gene is regulated in a tissue-specific manner.
PMID:30155988
Biophysical and structural characterization of the thermostable WD40 domain of a prokaryotic protein, Thermomonospora curvata PkwA.
PMID:30154510
Nomenclature for endogenous retrovirus (ERV) loci.
PMID:30153831
The Gut Microbiome in Adult and Pediatric Functional Gastrointestinal Disorders.
PMID:30153517
Nucleic Acid-Barcoding Technologies: Converting DNA Sequencing into a Broad-Spectrum Molecular Counter.
PMID:30153374
Transposable element dysregulation in systemic lupus erythematosus and regulation by histone conformation and Hsp90.
PMID:30149120
Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans.
PMID:30147753
Bioinformatic and biological avenues for understanding alcohol use disorder.
PMID:30144960
Endogenous retrovirus expression is associated with response to immune checkpoint blockade in clear cell renal cell carcinoma.
PMID:30135306
The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium.
PMID:30133459
Transcriptome-wide analysis uncovers the targets of the RNA-binding protein MSI2 and effects of MSI2's RNA-binding activity on IL-6 signaling.
PMID:30126842
Association of Bisphenol A Exposure with LINE-1 Hydroxymethylation in Human Semen.
PMID:30126118
Open questions: How many genes do we have?
PMID:30124169
Practical guidelines for rigor and reproducibility in preclinical and clinical studies on cardioprotection.
PMID:30120595
Cross-disciplinary evolution of the genomics revolution.
PMID:30116784
Application of genome analysis strategies in the clinical testing for pediatric diseases.
PMID:30112248
Discovery of 7-hydroxyaporphines as conformationally restricted ligands for beta-1 and beta-2 adrenergic receptors.
PMID:30108929
Proteomics: Clinical and research applications in respiratory diseases.
PMID:30105802
A piRNA utilizes HILI and HIWI2 mediated pathway to down-regulate ferritin heavy chain 1 mRNA in human somatic cells.
PMID:30102404
[The Use Of Pulmonary Gene Therapy In The Treatment Of Experimental Models Of Pneumonia And Septicemia].
PMID:30100668
Delineating inflammatory bowel disease through transcriptomic studies: current review of progress and evidence.
PMID:30090036
Somatic mutations in the human brain: implications for psychiatric research.
PMID:30087451
The age-regulated zinc finger factor ZNF367 is a new modulator of neuroblast proliferation during embryonic neurogenesis.
PMID:30087422
Gene editing in the context of an increasingly complex genome.
PMID:30086710
LINE- and Alu-containing genomic instability hotspot at 16q24.1 associated with recurrent and nonrecurrent CNV deletions causative for ACDMPV.
PMID:30084155
Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion.
PMID:30082403
Reconstruction of the cell entry pathway of an extinct virus.
PMID:30080900
Alcohol Metabolizing Polygenic Risk for Alcohol Consumption in European American College Students.
PMID:30079879
Trends to store digital data in DNA: an overview.
PMID:30073589
Related Endogenous Retrovirus-K Elements Harbor Distinct Protease Active Site Motifs.
PMID:30072963
De novo human genome assemblies reveal spectrum of alternative haplotypes in diverse populations.
PMID:30072691
Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation.
PMID:30070637
Microsatellite enhancers can be targeted to impair tumorigenesis.
PMID:30068701
KAP1 regulates endogenous retroviruses in adult human cells and contributes to innate immune control.
PMID:30061100
TIP60 represses activation of endogenous retroviral elements.
PMID:30053221
Mobile elements contribute to the uniqueness of human genome with 15,000 human-specific insertions and 14 Mbp sequence increase.
PMID:30052927
Epigenome editing of microsatellite repeats defines tumor-specific enhancer functions and dependencies.
PMID:30042132
[Genetics in medicine].
PMID:30039391
Ras Suppresses TXNIP Expression by Restricting Ribosome Translocation.
PMID:30037981
Non-Coding RNAs in Endometrial Physiopathology.
PMID:30037059
Cellular Genomic Sites of Hepatitis B Virus DNA Integration.
PMID:30037029
Investigation of epigenetic regulatory networks associated with autism spectrum disorder (ASD) by integrated global LINE-1 methylation and gene expression profiling analyses.
PMID:30036398
Characterization of Glycoproteins with the Immunoglobulin Fold by X-Ray Crystallography and Biophysical Techniques.
PMID:30035760
CRISPR-based reagents to study the influence of the epigenome on gene expression.
PMID:30030848
The genomics of insecticide resistance: insights from recent studies in African malaria vectors.
PMID:30025626
Noninvasive cancer biomarkers in solid malignancies: circulating tumor DNA-clinical utility, current limitations and future perspectives.
PMID:30023396
Retrotransposon-induced mosaicism in the neural genome.
PMID:30021882
Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing.
PMID:30018084
GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing.
PMID:30012093
Molecular biology as a tool for the treatment of cancer.
PMID:30006681
Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes.
PMID:30005633
Comparative genomic analysis of eutherian adiponectin genes.
PMID:30003153
L1 retrotransposition in the soma: a field jumping ahead.
PMID:30002735
HIV infection results in clonal expansions containing integrations within pathogenesis-related biological pathways.
PMID:29997284
Germline DNA replication timing shapes mammalian genome composition.
PMID:29986092
Gene-by-Gene or Localized Dosage Compensation on the Neo-X Chromosome in Drosophila miranda.
PMID:29986000
Tetz's theory and law of longevity.
PMID:29978435
Machine Learning and Radiogenomics: Lessons Learned and Future Directions.
PMID:29977864
LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs.
PMID:29976163
Reappraisal of Reported Genes for Sudden Arrhythmic Death: Evidence-Based Evaluation of Gene Validity for Brugada Syndrome.
PMID:29959160
G protein-coupled receptors: the evolution of structural insight.
PMID:29951585
Haplotype phasing in single-cell DNA-sequencing data.
PMID:29950014
Platforms for Investigating LncRNA Functions.
PMID:29945466
Ethics and Quality Assessment in Genetic Testing.
PMID:29942241
Towards Automation for Molecular Diagnosis of Cancer.
PMID:29942240
Engrailed homeoprotein blocks degeneration in adult dopaminergic neurons through LINE-1 repression.
PMID:29941661
Multigenome analysis implicates miniature inverted-repeat transposable elements (MITEs) in metabolic diversification in eudicots.
PMID:29941591
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.
PMID:29937276
Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic Data.
PMID:29936186
Identification of transposable elements fused in the exonic region of the olive flounder genome.
PMID:29934806
Transverse cardiac slicing and optical imaging for analysis of transmural gradients in membrane potential and Ca2+ transients in murine heart.
PMID:29928770
MALAT1: A long non-coding RNA highly associated with human cancers.
PMID:29928382
Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly.
PMID:29925783
A machine-learned analysis of human gene polymorphisms modulating persisting pain points to major roles of neuroimmune processes.
PMID:29923268
Horizontally transferred genes in the ctenophore Mnemiopsis leidyi.
PMID:29922518
RNA Degradation in Neurodegenerative Disease.
PMID:29916018
Motifome comparison between modern human, Neanderthal and Denisovan.
PMID:29914355
Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements.
PMID:29907612
Clinical validation of the Tempus xO assay.
PMID:29899824
Human Genetics of Obesity and Type 2 Diabetes Mellitus: Past, Present, and Future.
PMID:29899044
ALUminating the Path of Atherosclerosis Progression: Chaos Theory Suggests a Role for Alu Repeats in the Development of Atherosclerotic Vascular Disease.
PMID:29895733
Genetic Diversity in the UV Sex Chromosomes of the Brown Alga Ectocarpus.
PMID:29882839
Genetic testing and autism: Tutorial for communication sciences and disorders.
PMID:29879582
Cancer epigenetics: Moving forward.
PMID:29879107
RNA Editing and Retrotransposons in Neurology.
PMID:29875629
Precision cancer therapy is impacted by oncogene-dependent epigenome remodeling.
PMID:29872691
DACCOR-Detection, characterization, and reconstruction of repetitive regions in bacterial genomes.
PMID:29868249
Long Non-coding RNAs in Endothelial Biology.
PMID:29867565
Evolutionary divergence of 3' UTRs in cichlid fishes.
PMID:29866078
Evolution, kidney development, and chronic kidney disease.
PMID:29857053
Mining the literature for genes associated with placenta-mediated maternal diseases.
PMID:29854219
Counteraction of Oxidative Stress by Vitamin E Affects Epigenetic Regulation by Increasing Global Methylation and Gene Expression of MLH1 and DNMT1 Dose Dependently in Caco-2 Cells.
PMID:29854080
The Physical and Biochemical Properties of the Extracellular Matrix Regulate Cell Fate.
PMID:29853174
Landscape of Microsatellite Instability Across 39 Cancer Types.
PMID:29850653
Whole-Genome Sequencing in Cancer.
PMID:29844223
Long-Distance Relationships: Suppression of Repeat-Mediated Deletions.
PMID:29804746
Mining of potential drug targets through the identification of essential and analogous enzymes in the genomes of pathogens of Glycine max, Zea mays and Solanum lycopersicum.
PMID:29799863
Prenatal Perfluorooctyl Sulfonate Exposure and Alu DNA Hypomethylation in Cord Blood.
PMID:29795014
Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics.
PMID:29794536
Getting up close and personal with UK genomics and beyond.
PMID:29793512
Mutalisk: a web-based somatic MUTation AnaLyIS toolKit for genomic, transcriptional and epigenomic signatures.
PMID:29790943
PUF60-activated exons uncover altered 3' splice-site selection by germline missense mutations in a single RRM.
PMID:29788428
ZNF418 overexpression protects against gastric carcinoma and prompts a good prognosis.
PMID:29785125
All I's on the RADAR: role of ADAR in gene regulation.
PMID:29770436
A Next-Generation Sequencing Primer-How Does It Work and What Can It Do?
PMID:29761157
Selective modulation of local linkages between active transcription and oxidative demethylation activity shapes cardiomyocyte-specific gene-body epigenetic status in mice.
PMID:29747586
Transactivation of human endogenous retrovirus K (HERV-K) by KSHV promotes Kaposi's sarcoma development.
PMID:29743595
Osmotic modulation of chromatin impacts on efficiency and kinetics of cell fate modulation.
PMID:29740078
A deeper view into the significance of simple sequence repeats in pre-miRNAs provides clues for its possible roles in determining the function of microRNAs.
PMID:29739315
Detection and analysis of ancient segmental duplications in mammalian genomes.
PMID:29735604
Towards a map of cis-regulatory sequences in the human genome.
PMID:29733395
Copy Number Variation Disorders.
PMID:29732242
Genome Editing Redefines Precision Medicine in the Cardiovascular Field.
PMID:29731778
Targeting RNA in mammalian systems with small molecules.
PMID:29726113
Reconstruction of a replication-competent ancestral murine endogenous retrovirus-L.
PMID:29716624
Heritable L1 Retrotransposition Events During Development: Understanding Their Origins: Examination of heritable, endogenous L1 retrotransposition in mice opens up exciting new questions and research directions.
PMID:29709066
Predicting gene structure changes resulting from genetic variants via exon definition features.
PMID:29701825
Nuclear Signaling of Plant MAPKs.
PMID:29696029
Prostate Cancer Genomics: Recent Advances and the Prevailing Underrepresentation from Racial and Ethnic Minorities.
PMID:29690565
Differential Effect of Selection against LINE Retrotransposons among Vertebrates Inferred from Whole-Genome Data and Demographic Modeling.
PMID:29688421
Effective discovery of rare variants by pooled target capture sequencing: A comparative analysis with individually indexed target capture sequencing.
PMID:29677560
Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.
PMID:29677183
Cell type transcriptome atlas for the planarian Schmidtea mediterranea.
PMID:29674431
Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila.
PMID:29669801
Melanoma: What do all the mutations mean?
PMID:29663336
Rare Splice Variants in Long Non-Coding RNAs.
PMID:29657294
Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.
PMID:29648536
Identification and characterization of short tandem repeats in the Tibetan macaque genome based on resequencing data.
PMID:29643326
L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis.
PMID:29643204
Tracking the Continuous Evolutionary Processes of an Endogenous Retrovirus of the Domestic Cat: ERV-DC.
PMID:29642384
Genotype imputation performance of three reference panels using African ancestry individuals.
PMID:29637265
Repeat-mediated deletions can be induced by a chromosomal break far from a repeat, but multiple pathways suppress such rearrangements.
PMID:29636371
DNA methylation profiles correlated to striped bass sperm fertility.
PMID:29636007
Targeting IS608 transposon integration to highly specific sequences by structure-based transposon engineering.
PMID:29635476
Reactivation of endogenous retroviral elements via treatment with DNMT- and HDAC-inhibitors.
PMID:29633898
A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms.
PMID:29632618
Relationship between Long Interspersed Nuclear Element-1 DNA Methylation in Leukocytes and Dyslipidemia in the Japanese General Population.
PMID:29628482
A novel long non-coding RNA Myolinc regulates myogenesis through TDP-43 and Filip1.
PMID:29618024
An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics.
PMID:29617896
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data.
PMID:29617727
The SAMHD1-mediated block of LINE-1 retroelements is regulated by phosphorylation.
PMID:29610582
From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond.
PMID:29600857
Protein-nucleic acid interactions of LINE-1 ORF1p.
PMID:29596909
HERV Envelope Proteins: Physiological Role and Pathogenic Potential in Cancer and Autoimmunity.
PMID:29593697
The influence of transcript assembly on the proteogenomics discovery of microproteins.
PMID:29584760
HnRNP L represses cryptic exons.
PMID:29581412
Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates.
PMID:29580552
Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations.
PMID:29576615
In silico analysis of endogenous siRNAs associated transposable elements and NATs in Schistosoma japonicum reveals their putative roles during reproductive development.
PMID:29568977
Human LINE-1 retrotransposition requires a metastable coiled coil and a positively charged N-terminus in L1ORF1p.
PMID:29565245
iPS Cells-The Triumphs and Tribulations.
PMID:29563461
Multispecies reconstructions uncover widespread conservation, and lineage-specific elaborations in eukaryotic mRNA metabolism.
PMID:29561870
Identification of sex-specific DNA methylation changes driven by specific chemicals in cord blood in a Faroese birth cohort.
PMID:29560787
The Ever-Evolving Concept of the Gene: The Use of RNA/Protein Experimental Techniques to Understand Genome Functions.
PMID:29560353
Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis.
PMID:29560044
Precision oncology in advanced cancer patients improves overall survival with lower weekly healthcare costs.
PMID:29552312
Nimbus: a design-driven analyses suite for amplicon-based NGS data.
PMID:29538618
Transcriptional landscape of human endogenous retroviruses (HERVs) and other repetitive elements in psoriatic skin.
PMID:29531256
Global analysis of A-to-I RNA editing reveals association with common disease variants.
PMID:29527417
Investigation of Endogenous Retrovirus Sequences in the Neighborhood of Genes Up-regulated in a Neuroblastoma Model after Treatment with Hypoxia-Mimetic Cobalt Chloride.
PMID:29515560
Human Endogenous Retroviruses and Their Putative Role in the Development of Autoimmune Disorders Such as Multiple Sclerosis.
PMID:29515547
Spliced integrated retrotransposed element (SpIRE) formation in the human genome.
PMID:29505568
Reading the tea leaves: Dead transposon copies reveal novel host and transposon biology.
PMID:29505560
LINE-1 ORF1 Protein Is Up-regulated by Reactive Oxygen Species and Associated with Bladder Urothelial Carcinoma Progression.
PMID:29496693
DNA methylation in the pathogenesis of type 2 diabetes in humans.
PMID:29496428
Elevated HERV-K Expression in Soft Tissue Sarcoma Is Associated with Worsened Relapse-Free Survival.
PMID:29487589
High-Throughput Methods to Detect Long Non-Coding RNAs.
PMID:29485610
Agonistic Autoantibodies to the β2-Adrenergic Receptor Involved in the Pathogenesis of Open-Angle Glaucoma.
PMID:29483909
Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells.
PMID:29482634
Genetic instability associated with loop or stem-loop structures within transcription units can be independent of nucleotide excision repair.
PMID:29474673
Introduction to mammalian genome special issue: the combined role of genetics and environment relevant to human disease outcomes.
PMID:29460122
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.
PMID:29447159
Glia maturation factor-β: a potential therapeutic target in neurodegeneration and neuroinflammation.
PMID:29445286
Mutation in an alternative transcript of CDKL5 in a boy with early-onset seizures.
PMID:29444904
Evolution of neuropeptide signalling systems.
PMID:29440283
Alternative Splicing as a Target for Cancer Treatment.
PMID:29439487
Toward a Tiered Model to Share Clinical Trial Data and Samples in Precision Oncology.
PMID:29435448
Treatment with 5-azacitidine delay growth of glioblastoma xenografts: a potential new treatment approach for glioblastomas.
PMID:29427211
OVAS: an open-source variant analysis suite with inheritance modelling.
PMID:29422027
Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.
PMID:29398526
Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases.
PMID:29396793
Mammalian transposable elements and their impacts on genome evolution.
PMID:29392473
A high throughput screen for active human transposable elements.
PMID:29390960
Transcriptome-wide identification of the RNA-binding landscape of the chromatin-associated protein PARP1 reveals functions in RNA biogenesis.
PMID:29387452
Co(II) Coordination in Prokaryotic Zinc Finger Domains as Revealed by UV-Vis Spectroscopy.
PMID:29386985
Liver X Receptor-Binding DNA Motif Associated With Atherosclerosis-Specific DNA Methylation Profiles of Alu Elements and Neighboring CpG Islands.
PMID:29386205
Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA.
PMID:29385572
Serum DNA integrity index as a potential molecular biomarker in endometrial cancer.
PMID:29382392
Rheumatoid arthritis patient antibodies highly recognize IL-2 in the immune response pathway involving IRF5 and EBV antigens.
PMID:29379122
Protecting and Diversifying the Germline.
PMID:29378808
Cognitive genomics: Searching for the genetic roots of neuropsychological functioning.
PMID:29376674
Intraspecific and intraorganismal copy number dynamics of retrotransposons and tandem repeat in Aegilops speltoides Tausch (Poaceae, Triticeae).
PMID:29374788
Patterns of variation in cis-regulatory regions: examining evidence of purifying selection.
PMID:29373957
Targeted deletion of a 170-kb cluster of LINE-1 repeats and implications for regional control.
PMID:29367313
Plasmodium parasites of birds have the most AT-rich genes of eukaryotes.
PMID:29360019
The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.
PMID:29358652
Reccurrent F8 Intronic Deletion Found in Mild Hemophilia A Causes Alu Exonization.
PMID:29357978
Beta and Gamma Human Herpesviruses: Agonistic and Antagonistic Interactions with the Host Immune System.
PMID:29354096
qPortal: A platform for data-driven biomedical research.
PMID:29352322
GenomeLandscaper: Landscape analysis of genome-fingerprints maps assessing chromosome architecture.
PMID:29348569
Natural antisense transcripts in diseases: From modes of action to targeted therapies.
PMID:29341438
Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
PMID:29335803
Transposable elements: genome innovation, chromosome diversity, and centromere conflict.
PMID:29332159
High expression of Endogenous Retroviruses from intrauterine life to adulthood in two mouse models of Autism Spectrum Disorders.
PMID:29330412
Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption.
PMID:29330329
Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons.
PMID:29328915
Whole-genome sequencing reveals principles of brain retrotransposition in neurodevelopmental disorders.
PMID:29327725
Analysis of DNA modifications in aging research.
PMID:29327208
Dissection of Myogenic Differentiation Signatures in Chickens by RNA-Seq Analysis.
PMID:29324704
Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions.
PMID:29322920
Using Genome Sequence to Enable the Design of Medicines and Chemical Probes.
PMID:29322778
Structural and Evolutionary Relationships in the Giant Sex Chromosomes of Three Microtus Species.
PMID:29320452
Identification of Inherited Retinal Disease-Associated Genetic Variants in 11 Candidate Genes.
PMID:29320387
Interplay between RNASEH2 and MOV10 controls LINE-1 retrotransposition.
PMID:29315404
Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs.
PMID:29315213
The lncRNA-HOXA-AS2/EZH2/LSD1 oncogene complex promotes cell proliferation in pancreatic cancer.
PMID:29312501
Potential Links between Hepadnavirus and Bornavirus Sequences in the Host Genome and Cancer.
PMID:29312227
Physiological and Pathological Transcriptional Activation of Endogenous Retroelements Assessed by RNA-Sequencing of B Lymphocytes.
PMID:29312197
The Importance of ncRNAs as Epigenetic Mechanisms in Phenotypic Variation and Organic Evolution.
PMID:29312192
Novel Transcriptional Activity and Extensive Allelic Imbalance in the Human MHC Region.
PMID:29311362
LINE-1 protein localization and functional dynamics during the cell cycle.
PMID:29309036
Dissection of affinity captured LINE-1 macromolecular complexes.
PMID:29309035
Long interspersed nuclear element-1 expression and retrotransposition in prostate cancer cells.
PMID:29308092
Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids.
PMID:29301786
The effects of transcription and recombination on mutational dynamics of short tandem repeats.
PMID:29300948
The development and growth of EJHG 1995-2017.
PMID:29297878
Erythrogene: a database for in-depth analysis of the extensive variation in 36 blood group systems in the 1000 Genomes Project.
PMID:29296939
Alu element insertion in PKLR gene as a novel cause of pyruvate kinase deficiency in Middle Eastern patients.
PMID:29288557
Overexpressed HSF1 cancer signature genes cluster in human chromosome 8q.
PMID:29268782
From a retrovirus infection of mice to a long noncoding RNA that induces proto-oncogene transcription and oncogenesis via an epigenetic transcription switch.
PMID:29263895
Was the Watchmaker Blind? Or Was She One-Eyed?
PMID:29261138
Recognizing the SINEs of Infection: Regulation of Retrotransposon Expression and Modulation of Host Cell Processes.
PMID:29258254
De-novo emergence of SINE retroposons during the early evolution of passerine birds.
PMID:29255493
Single molecule sequencing of the M13 virus genome without amplification.
PMID:29253901
Analysis of the Expression of Repetitive DNA Elements in Osteosarcoma.
PMID:29250102
Size, Shape, and Sequence-Dependent Immunogenicity of RNA Nanoparticles.
PMID:29246318
LINE-1 retrotransposons in healthy and diseased human brain.
PMID:29239145
Circular RNAs: A novel type of non-coding RNA and their potential implications in antiviral immunity.
PMID:29230098
Disease onset in X-linked dystonia-parkinsonism correlates with expansion of a hexameric repeat within an SVA retrotransposon in TAF1.
PMID:29229810
Identification of differentially expressed genes, lncRNAs and miRNAs which are associated with tumor malignant phenotypes in hepatoblastoma patients.
PMID:29228631
Age-dependent changes in mean and variance of gene expression across tissues in a twin cohort.
PMID:29228364
Patient Engagement in Kidney Research: Opportunities and Challenges Ahead.
PMID:29225906
Transcription coupled repair and biased insertion of human retrotransposon L1 in transcribed genes.
PMID:29225704
Diagnostic and prognostic tests in systemic lupus erythematosus.
PMID:29224677
Integrating 5hmC and gene expression data to infer regulatory mechanisms.
PMID:29220513
Computational identification of harmful mutation regions to the activity of transposable elements.
PMID:29219079
Lessons from the Human Genome Project: Modesty, Honesty, and Realism.
PMID:29218057
Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
PMID:29211708
Living Organisms Author Their Read-Write Genomes in Evolution.
PMID:29211049
Whole-exome sequencing of sickle cell disease patients with hyperhemolysis syndrome suggests a role for rare variation in disease predisposition.
PMID:29210071
Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re-Visiting the "Gene-Battery" Model.
PMID:29206283
Detection of the LINE-1 retrotransposon RNA-binding protein ORF1p in different anatomical regions of the human brain.
PMID:29201157
The rise of the genome and personalised medicine.
PMID:29196356
Decontaminating eukaryotic genome assemblies with machine learning.
PMID:29191179
A Multilayered Control of the Human Survival Motor Neuron Gene Expression by Alu Elements.
PMID:29187847
Genomic copy number variation analysis in multiple system atrophy.
PMID:29187220
Functional horizontal gene transfer from bacteria to eukaryotes.
PMID:29176581
Catching hidden variation: systematic correction of reference minor allele annotation in clinical variant calling.
PMID:29155419
Molecular Crosstalking among Noncoding RNAs: A New Network Layer of Genome Regulation in Cancer.
PMID:29147648
The Epstein-Barr Virus Episome Maneuvers between Nuclear Chromatin Compartments during Reactivation.
PMID:29142137
DNA damage responses and p53 in the aging process.
PMID:29141944
The European Nucleotide Archive in 2017.
PMID:29140475
Genomic structural variations lead to dysregulation of important coding and non-coding RNA species in dilated cardiomyopathy.
PMID:29138229
Optimized approach for the identification of highly efficient correctors of nonsense mutations in human diseases.
PMID:29131862
Improving virtual screening of G protein-coupled receptors via ligand-directed modeling.
PMID:29131821
Significance of functional disease-causal/susceptible variants identified by whole-genome analyses for the understanding of human diseases.
PMID:29129848
Neurobiology: A genetic cause of age-related decline.
PMID:29120415
Alternative splicing regulation in tumor necrosis factor-mediated inflammation.
PMID:29113151
Detection of subclonal L1 transductions in colorectal cancer by long-distance inverse-PCR and Nanopore sequencing.
PMID:29109480
The first draft reference genome of the American mink (Neovison vison).
PMID:29109430
Coevolution between transposable elements and recombination.
PMID:29109221
RNA versatility, flexibility, and thermostability for practice in RNA nanotechnology and biomedical applications.
PMID:29105333
A Role for the Mutagenic DNA Self-Catalyzed Depurination Mechanism in the Evolution of 7SL-Derived RNAs.
PMID:29103173
An endosiRNA-Based Repression Mechanism Counteracts Transposon Activation during Global DNA Demethylation in Embryonic Stem Cells.
PMID:29100015
Can Probiotic Supplements Improve Outcomes in Rheumatoid Arthritis?
PMID:29094223
A Never Ending Story..
PMID:29090025
The shortening of leukocyte telomere length relates to DNA hypermethylation of LINE-1 in type 2 diabetes mellitus.
PMID:29088760
Haplotype-specific MAPT exon 3 expression regulated by common intronic polymorphisms associated with Parkinsonian disorders.
PMID:29084565
Methylation of ZNF331 is an independent prognostic marker of colorectal cancer and promotes colorectal cancer growth.
PMID:29075358
BBMerge - Accurate paired shotgun read merging via overlap.
PMID:29073143
Molecular determinants of beta-adrenergic signaling to voltage-gated K+ channels in the cerebral circulation.
PMID:29072364
Epigenetics and precision medicine in cardiovascular patients: from basic concepts to the clinical arena.
PMID:29069341
Pivotal Impacts of Retrotransposon Based Invasive RNAs on Evolution.
PMID:29067016
A Review of Recent Advances in Translational Bioinformatics: Bridges from Biology to Medicine.
PMID:29063562
The emerging roles of NGS-based liquid biopsy in non-small cell lung cancer.
PMID:29061113
Genome-wide association study reveals genetic loci and candidate genes for average daily gain in Duroc pigs.
PMID:29059722
PopHuman: the human population genomics browser.
PMID:29059408
Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues.
PMID:29058714
[Big Data Revolution or Data Hubris? : On the Data Positivism of Molecular Biology].
PMID:29058018
DNA methylation and hydroxymethylation analyses of the active LINE-1 subfamilies in mice.
PMID:29051587
Precision medicine for all? Challenges and opportunities for a precision medicine approach to critical illness.
PMID:29047353
The role of gene variants in the pathogenesis of neurodegenerative disorders as revealed by next generation sequencing studies: a review.
PMID:29046784
HIV-1 Infection of Primary CD4+ T Cells Regulates the Expression of Specific Human Endogenous Retrovirus HERV-K (HML-2) Elements.
PMID:29046457
Ribosome Biogenesis Modulates Ty1 Copy Number Control in Saccharomyces cerevisiae.
PMID:29046400
The Antibody Repertoire of Colorectal Cancer.
PMID:29046389
Integrating networks and comparative genomics reveals retroelement proliferation dynamics in hominid genomes.
PMID:29043294
A plasma proteomics method reveals links between ischemic stroke and MTHFR C677T genotype.
PMID:29042595
Human Genome Sequencing at the Population Scale: A Primer on High-Throughput DNA Sequencing and Analysis.
PMID:29040395
Highly sensitive and specific Alu-based quantification of human cells among rodent cells.
PMID:29038571
Striking a balance: regulation of transposable elements by Zfp281 and Mll2 in mouse embryonic stem cells.
PMID:29036642
cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches.
PMID:29036576
HOXD-AS1 functions as an oncogenic ceRNA to promote NSCLC cell progression by sequestering miR-147a.
PMID:29033588
Emerging and evolving concepts in gene essentiality.
PMID:29033457
Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".
PMID:29029728
Condensin II and GAIT complexes cooperate to restrict LINE-1 retrotransposition in epithelial cells.
PMID:29028794
CRISPR/Cas9-mediated noncoding RNA editing in human cancers.
PMID:29028415
High-resolution mapping of the pericentromeric region on wheat chromosome arm 5AS harbouring the Fusarium head blight resistance QTL Qfhs.ifa-5A.
PMID:29024288
Adaptive self-organization in the embryo: its importance to adult anatomy and to tissue engineering.
PMID:29023694
Comprehensive benchmarking of SNV callers for highly admixed tumor data.
PMID:29020110
DNA sequencing at 40: past, present and future.
PMID:29019985
Differential gene regulatory networks in development and disease.
PMID:29018868
FACS-Assisted CRISPR-Cas9 Genome Editing Facilitates Parkinson's Disease Modeling.
PMID:28988985
STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data.
PMID:28984185
MicroRNA miR-128 represses LINE-1 (L1) retrotransposition by down-regulating the nuclear import factor TNPO1.
PMID:28974576
Human evolution: the non-coding revolution.
PMID:28969617
LINC00052 upregulates EPB41L3 to inhibit migration and invasion of hepatocellular carcinoma by binding miR-452-5p.
PMID:28969024
Clinical interpretation of copy number variants in the human genome.
PMID:28963714
Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.
PMID:28961772
Multiomics Approach to Asthma: Navigating the Network.
PMID:28960106
RNase H As Gene Modifier, Driver of Evolution and Antiviral Defense.
PMID:28959243
Functional Mechanisms of Microsatellite DNA in Eukaryotic Genomes.
PMID:28957459
Modeling GATAD1-Associated Dilated Cardiomyopathy in Adult Zebrafish.
PMID:28955713
Highly Variable Genomic Landscape of Endogenous Retroviruses in the C57BL/6J Inbred Strain, Depending on Individual Mouse, Gender, Organ Type, and Organ Location.
PMID:28951865
STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data.
PMID:28948042
Similar Evolutionary Trajectories for Retrotransposon Accumulation in Mammals.
PMID:28945883
Exosomal lncRNA GAS5 regulates the apoptosis of macrophages and vascular endothelial cells in atherosclerosis.
PMID:28945793
MicroRNAs in Heart Failure, Cardiac Transplantation, and Myocardial Recovery: Biomarkers with Therapeutic Potential.
PMID:28940102
Population-wide sampling of retrotransposon insertion polymorphisms using deep sequencing and efficient detection.
PMID:28938719
Host Noncoding Retrotransposons Induced by DNA Viruses: a SINE of Infection?
PMID:28931686
"Multi-Omics" Analyses of the Development and Function of Natural Killer Cells.
PMID:28928751
Satellite DNA: An Evolving Topic.
PMID:28926993
Elucidation of complexity and prediction of interactions in microbial communities.
PMID:28925555
Augmented expression of polo-like kinase 1 indicates poor clinical outcome for breast patients: a systematic review and meta-analysis.
PMID:28915707
Prediction of genome-wide DNA methylation in repetitive elements.
PMID:28911103
Distribution, Diversity, and Long-Term Retention of Grass Short Interspersed Nuclear Elements (SINEs).
PMID:28903462
Cell-free circulating DNA integrity is an independent predictor of impending breast cancer recurrence.
PMID:28903362
Alu-based cell-free DNA: a novel biomarker for screening of gastric cancer.
PMID:28903321
Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species.
PMID:28900618
Making a virtue of necessity: the pleiotropic role of human endogenous retroviruses in cancer.
PMID:28893944
Recent Advances in Experimental Whole Genome Haplotyping Methods.
PMID:28891974
Silencing of retrotransposons by SETDB1 inhibits the interferon response in acute myeloid leukemia.
PMID:28887438
Bias and Correction in RNA-seq Data for Marine Species.
PMID:28884399
Liquid biopsy in patients with hepatocellular carcinoma: Circulating tumor cells and cell-free nucleic acids.
PMID:28883691
Deamination-independent restriction of LINE-1 retrotransposition by APOBEC3H.
PMID:28883657
A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog.
PMID:28879061
Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding.
PMID:28877740
The Exposome: A New Frontier for Education.
PMID:28867821
Fifty years in human genetics--a career retrospective.
PMID:28860307
Identification of novel inhibitors against Cyclin Dependent Kinase 9/Cyclin T1 complex as: Anti cancer agent.
PMID:28855816
MSDB: A Comprehensive Database of Simple Sequence Repeats.
PMID:28854643
rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline.
PMID:28854222
RNA biology of disease-associated microsatellite repeat expansions.
PMID:28851463
The complexity of TRIM28 contribution to cancer.
PMID:28851455
Falling giants and the rise of gene editing: ethics, private interests and the public good.
PMID:28851444
Effect of health-belief-model-based training on performance of women in breast self-examination.
PMID:28848633
Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells.
PMID:28847161
Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips.
PMID:28842533
Evolution viewed from physics, physiology and medicine.
PMID:28839924
Biological action in Read-Write genome evolution.
PMID:28839913
A new role for FBP21 as regulator of Brr2 helicase activity.
PMID:28838205
Long noncoding RNAs coordinate functions between mitochondria and the nucleus.
PMID:28835257
Anti-HERV-K (HML-2) capsid antibody responses in HIV elite controllers.
PMID:28830571
Human Retrotransposon Insertion Polymorphisms Are Associated with Health and Disease via Gene Regulatory Phenotypes.
PMID:28824558
p53 binding sites in normal and cancer cells are characterized by distinct chromatin context.
PMID:28820292
Exploitation of Gene Expression and Cancer Biomarkers in Paving the Path to Era of Personalized Medicine.
PMID:28813639
The Retinoblastoma (RB) Tumor Suppressor: Pushing Back against Genome Instability on Multiple Fronts.
PMID:28812991
Discovery of Variants Underlying Host Susceptibility to Virus Infection Using Whole-Exome Sequencing.
PMID:28808973
A psychology of the human brain-gut-microbiome axis.
PMID:28804508
Silencing of Repetitive DNA Is Controlled by a Member of an Unusual Caenorhabditis elegans Gene Family.
PMID:28801529
Examining non-LTR retrotransposons in the context of the evolving primate brain.
PMID:28800766
Large Introns of 5 to 10 Kilo Base Pairs Can Be Spliced out in Arabidopsis.
PMID:28800125
Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.
PMID:28792005
Human genome-microbiome interaction: metagenomics frontiers for the aetiopathology of autoimmune diseases.
PMID:28785422
Genetically improved BarraCUDA.
PMID:28785314
"Squirrel" Primer-Based PCR Assay for Direct and Targeted Sanger Sequencing of Short Genomic Segments.
PMID:28785174
Presence of a Shared 5'-Leader Sequence in Ancestral Human and Mammalian Retroviruses and Its Transduction into Feline Leukemia Virus.
PMID:28768854
Impact of Alternative Splicing on the Human Proteome.
PMID:28768205
Novel copy number variation of POMGNT1 associated with muscle-eye-brain disease detected by next-generation sequencing.
PMID:28765568
Machine Learning-Assisted Network Inference Approach to Identify a New Class of Genes that Coordinate the Functionality of Cancer Networks.
PMID:28765560
Epigenetics of colorectal cancer: emerging circulating diagnostic and prognostic biomarkers.
PMID:28758105
Mobile DNA in Health and Disease.
PMID:28745987
Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity.
PMID:28743002
How should novelty be valued in science?
PMID:28742499
Resolving the prevalence of somatic transposition in Drosophila.
PMID:28742021
Dissecting evolution and disease using comparative vertebrate genomics.
PMID:28736437
ATM supports gammaherpesvirus replication by attenuating type I interferon pathway.
PMID:28732227
A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer.
PMID:28715472
Regulatory Roles of Long Non-Coding RNAs in the Central Nervous System and Associated Neurodegenerative Diseases.
PMID:28713244
Sensorimotor Learning: Neurocognitive Mechanisms and Individual Differences.
PMID:28705227
Genomic analysis of an infant with intractable diarrhea and dilated cardiomyopathy.
PMID:28701297
Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses.
PMID:28700586
Genetics and ALS: Cause for Optimism.
PMID:28698777
Medicine's movable feast: What jumping genes can teach us about treating disease.
PMID:28697180
Host genetic variation and HIV disease: from mapping to mechanism.
PMID:28695282
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics.
PMID:28691345
Materials Knowledge Systems in Python - A Data Science Framework for Accelerated Development of Hierarchical Materials.
PMID:28690971
LINE-1 hypomethylation is not a common event in preneoplastic stages of gastric carcinogenesis.
PMID:28684753
Interpreting whole genome and exome sequencing data of individual gastric cancer samples.
PMID:28683819
A Cell Fusion-Based Screening Method Identifies Glycosylphosphatidylinositol-Anchored Protein Ly6e as the Receptor for Mouse Endogenous Retroviral Envelope Syncytin-A.
PMID:28679758
Spectraplakin family proteins - cytoskeletal crosslinkers with versatile roles.
PMID:28679697
Modeling human disease in rodents by CRISPR/Cas9 genome editing.
PMID:28677007
The Exposome Paradigm in Human Health: Lessons from the Emory Exposome Summer Course.
PMID:28669935
LTRs of Endogenous Retroviruses as a Source of Tbx6 Binding Sites.
PMID:28664156
Landscape and variation of novel retroduplications in 26 human populations.
PMID:28662076
The Piwi-piRNA pathway: road to immortality.
PMID:28653810
Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
PMID:28650462
Transposable elements in cancer.
PMID:28642606
Managing the genomic revolution in cancer diagnostics.
PMID:28639053
Differential chromosomal organization between Saguinus midas and Saguinus bicolor with accumulation of differences the repetitive sequence DNA.
PMID:28634866
Increasing the reach of forensic genetics with massively parallel sequencing.
PMID:28631109
Molecular mechanisms of experience-dependent maturation in cortical GABAergic inhibition.
PMID:28628196
A water-soluble DsbB variant that catalyzes disulfide-bond formation in vivo.
PMID:28628094
Utilization of genomic sequencing for population screening of immunodeficiencies in the newborn.
PMID:28617419
Expression of HERV-K108 envelope interferes with HIV-1 production.
PMID:28605635
The Genomic Impact of Gene Retrocopies: What Have We Learned from Comparative Genomics, Population Genomics, and Transcriptomic Analyses?
PMID:28605529
DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats.
PMID:28604729
Primate-specific Long Non-coding RNAs and MicroRNAs.
PMID:28602844
Interplay between viruses and bacterial microbiota in cancer development.
PMID:28602713
Genome-wide mapping and characterization of microsatellites in the swamp eel genome.
PMID:28600492
Dissecting LSD1-Dependent Neuronal Maturation in the Olfactory Epithelium.
PMID:28597915
Reanalysis of BRCA1/2 negative high risk ovarian cancer patients reveals novel germline risk loci and insights into missing heritability.
PMID:28591191
A conserved role for the ESCRT membrane budding complex in LINE retrotransposition.
PMID:28586350
Large normal-range TBP and ATXN7 CAG repeat lengths are associated with increased lifetime risk of depression.
PMID:28585930
Analysis of LINE-1 Elements in DNA from Postmortem Brains of Individuals with Schizophrenia.
PMID:28585566
High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.
PMID:28581499
Transposable elements in Drosophila.
PMID:28580197
Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions.
PMID:28572566
The genetics revolution in rheumatology: large scale genomic arrays and genetic mapping.
PMID:28569263
Epigenetic Control of Human Endogenous Retrovirus Expression: Focus on Regulation of Long-Terminal Repeats (LTRs).
PMID:28561791
The Role of Somatic L1 Retrotransposition in Human Cancers.
PMID:28561751
Clinically Focused Molecular Investigation of 1000 Consecutive Families with Inherited Retinal Disease.
PMID:28559085
Genome annotation for clinical genomic diagnostics: strengths and weaknesses.
PMID:28558813
A birth of bipartite exon by intragenic deletion.
PMID:28546999
Refining the ideas of "ethnic" skin.
PMID:28538883
Methylation Levels of LINE-1 As a Useful Marker for Venous Invasion in Both FFPE and Frozen Tumor Tissues of Gastric Cancer.
PMID:28535662
Last rolls of the yoyo: Assessing the human canonical protein count.
PMID:28529709
L1 retrotransposition is activated by Ten-eleven-translocation protein 1 and repressed by methyl-CpG binding proteins.
PMID:28524723
Reading LINEs within the cocaine addicted brain.
PMID:28523221
Identification of human short introns.
PMID:28520720
DNA Sequence Analysis in Clinical Medicine, Proceeding Cautiously.
PMID:28516087
Robust long-read native DNA sequencing using the ONT CsgG Nanopore system.
PMID:28503666
Metazoan Ribosome Inactivating Protein encoding genes acquired by Horizontal Gene Transfer.
PMID:28500327
Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution.
PMID:28500258
Relationship between regulatory pattern of gene expression level and gene function.
PMID:28494005
Dynamic silencing of somatic L1 retrotransposon insertions reflects the developmental and cellular contexts of their genomic integration.
PMID:28491150
Evidence for transcriptome-wide RNA editing among Sus scrofa PRE-1 SINE elements.
PMID:28486975
Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species.
PMID:28486636
Horizontal gene transfer is not a hallmark of the human genome.
PMID:28482857
Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome.
PMID:28482049
Comparative transcriptomics in human and mouse.
PMID:28479595
Contrasting Sex-and Caste-Dependent piRNA Profiles in the Transposon Depleted Haplodiploid Honeybee Apis mellifera.
PMID:28472327
Reliability of algorithmic somatic copy number alteration detection from targeted capture data.
PMID:28472276
EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes.
PMID:28472109
Improving your four-dimensional image: traveling through a decade of light-sheet-based fluorescence microscopy research.
PMID:28471459
Structural variants caused by Alu insertions are associated with risks for many human diseases.
PMID:28465436
T-cell activation RhoGTPase-activating protein plays an important role in TH17-cell differentiation.
PMID:28462950
A novel MERTK mutation causing retinitis pigmentosa.
PMID:28462455
Epigenomic and transcriptomic approaches in the post-genomic era: path to novel targets for diagnosis and therapy of the ischaemic heart? Position Paper of the European Society of Cardiology Working Group on Cellular Biology of the Heart.
PMID:28460026
LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis.
PMID:28450881
Coronins and their role in immunological phenomena.
PMID:28450807
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
PMID:28448065
Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
PMID:28448031
Molecular mechanisms by which HERV-K Gag interferes with HIV-1 Gag assembly and particle infectivity.
PMID:28446240
Small RNA Pathways That Protect the Somatic Genome.
PMID:28445427
The evolution of neuropeptide signalling: insights from echinoderms.
PMID:28444138
Evolutionary history of the extant amphioxus lineage with shallow-branching diversification.
PMID:28442709
Implementing an Internet-Delivered Skin Cancer Genetic Testing Intervention to Improve Sun Protection Behavior in a Diverse Population: Protocol for a Randomized Controlled Trial.
PMID:28442450
Early vertebrate origin and diversification of small transmembrane regulators of cellular ion transport.
PMID:28436536
Truncated ORF1 proteins can suppress LINE-1 retrotransposition in trans.
PMID:28431148
Large-scale collection of full-length cDNA and transcriptome analysis in Hevea brasiliensis.
PMID:28431015
Global Fecal and Plasma Metabolic Dynamics Related to Helicobacter pylori Eradication.
PMID:28424674
Molecular genetics: Chaperone protein gets personal.
PMID:28424517
Identification and characterization of L1-specific endo-siRNAs essential for early embryonic development in pig.
PMID:28423565
Sharing Data to Build a Medical Information Commons: From Bermuda to the Global Alliance.
PMID:28415857
Selective elimination of long INterspersed element-1 expressing tumour cells by targeted expression of the HSV-TK suicide gene.
PMID:28415677
Long non-coding RNAs in cutaneous melanoma: clinical perspectives.
PMID:28415644
Repetitive DNA loci and their modulation by the non-canonical nucleic acid structures R-loops and G-quadruplexes.
PMID:28406751
Characterization of genome-wide segmental duplications reveals a common genomic feature of association with immunity among domestic animals.
PMID:28403820
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.
PMID:28403240
Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors.
PMID:28397686
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.
PMID:28396521
Scaling by shrinking: empowering single-cell 'omics' with microfluidic devices.
PMID:28392571
A comprehensive hybridization model allows whole HERV transcriptome profiling using high density microarray.
PMID:28390408
DNA word analysis based on the distribution of the distances between symmetric words.
PMID:28389642
Monochromosomal Hybrids and Chromosome Transfer: A Functional Approach for Gene Identification.
PMID:28387649
Multi-scale chromatin state annotation using a hierarchical hidden Markov model.
PMID:28387224
Precision Cardiovascular Medicine: State of Genetic Testing.
PMID:28385198
Translation of Nutritional Genomics into Nutrition Practice: The Next Step.
PMID:28383492
Direct determination of diploid genome sequences.
PMID:28381613
Structural features embedded in G protein-coupled receptor co-crystal structures are key to their success in virtual screening.
PMID:28380046
Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes.
PMID:28379581
Widespread of horizontal gene transfer in the human genome.
PMID:28376762
Milestones in pathology-from histology to molecular biology.
PMID:28367253
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation.
PMID:28365736
Genome graphs and the evolution of genome inference.
PMID:28360232
The double-edged sword of (re)expression of genes by hypomethylating agents: from viral mimicry to exploitation as priming agents for targeted immune checkpoint modulation.
PMID:28359286
Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism.
PMID:28351387
Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics.
PMID:28348455
Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus.
PMID:28348391
INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes.
PMID:28344990
The feasibility of genome-scale biological network inference using Graphics Processing Units.
PMID:28344638
Variants in the host genome may inhibit tumour growth in devil facial tumours: evidence from genome-wide association.
PMID:28341828
Schizosaccharomyces pombe MutSα and MutLα Maintain Stability of Tetra-Nucleotide Repeats and Msh3 of Hepta-Nucleotide Repeats.
PMID:28341698
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.
PMID:28336562
DNA Sequencing Sensors: An Overview.
PMID:28335417
PML nuclear bodies contribute to the basal expression of the mTOR inhibitor DDIT4.
PMID:28332630
When Should Genetic Testing Be Performed in Epilepsy Patients?
PMID:28331464
Intragenic multi-exon deletion in the FBN1 gene in a child with mildly dilated aortic sinus: a retrotransposal event.
PMID:28331219
Gene-based genome-wide association study identified 19p13.3 for lean body mass.
PMID:28322352
Identification and Expression of Equine MER-Derived miRNAs.
PMID:28320202
From Sequence Data to Returnable Results: Ethical Issues in Variant Calling and Interpretation.
PMID:28306396
Y chromosome palindromes and gene conversion.
PMID:28303348
Editing the genome of hiPSC with CRISPR/Cas9: disease models.
PMID:28303292
Epigenetic and genetic alterations and their influence on gene regulation in chronic lymphocytic leukemia.
PMID:28302063
Decoupling of DNA methylation and activity of intergenic LINE-1 promoters in colorectal cancer.
PMID:28300471
ThermoAlign: a genome-aware primer design tool for tiled amplicon resequencing.
PMID:28300202
Functional interrogation of non-coding DNA through CRISPR genome editing.
PMID:28288828
Integration site selection by retroviruses and transposable elements in eukaryotes.
PMID:28286338
The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.
PMID:28284188
Molecular Tumor Boards: Ethical Issues in the New Era of Data Medicine.
PMID:28281147
Characterization of contiguous gene deletions in COL4A6 and COL4A5 in Alport syndrome-diffuse leiomyomatosis.
PMID:28275241
Non-coding RNA: It's Not Junk.
PMID:28271304
Precision medicine driven by cancer systems biology.
PMID:28265786
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.
PMID:28263316
Analytical Biases Associated with GC-Content in Molecular Evolution.
PMID:28261263
Extracellular vesicles as trans-genomic agents: Emerging roles in disease and evolution.
PMID:28256033
Genomic landscape of CpG rich elements in human.
PMID:28251877
Diversity in non-repetitive human sequences not found in the reference genome.
PMID:28250455
High-Throughput Proteomic Approaches to the Elucidation of Potential Biomarkers of Chronic Allograft Injury (CAI).
PMID:28250402
Protein-Protein Interactions: Gene Acronym Redundancies and Current Limitations Precluding Automated Data Integration.
PMID:28250396
The lncRNA XIST exhibits oncogenic properties via regulation of miR-449a and Bcl-2 in human non-small cell lung cancer.
PMID:28248928
Omics Approaches for the Study of Adaptive Immunity to Staphylococcus aureus and the Selection of Vaccine Candidates.
PMID:28248221
Conserved expression of transposon-derived non-coding transcripts in primate stem cells.
PMID:28245871
Targeting Splicing in the Treatment of Human Disease.
PMID:28245575
The Isochores as a Fundamental Level of Genome Structure and Organization: A General Overview.
PMID:28243687
Role of Protein Phosphatase 2A in Osteoblast Differentiation and Function.
PMID:28241467
GSA and BIGD: Filling the Gap of Bioinformatics Resource and Service in China<sup/>
PMID:28235641
Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation.
PMID:28233272
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.
PMID:28232478
Population and clinical genetics of human transposable elements in the (post) genomic era.
PMID:28228978
Comparative genomic analysis of eutherian kallikrein genes.
PMID:28224083
MicroRNAs in model and complex organisms.
PMID:28220336
Big Data Analytics for Genomic Medicine.
PMID:28212287
Alu-Derived Alternative Splicing Events Specific to Macaca Lineages in CTSF Gene.
PMID:28196413
Opportunities and challenges of whole-genome and -exome sequencing.
PMID:28193154
Lateral gene transfer between prokaryotes and eukaryotes.
PMID:28189637
The Human Long Interspersed Element-1 Retrotransposon: An Emerging Biomarker of Neoplasia.
PMID:28188229
An accurate and efficient method for large-scale SSR genotyping and applications.
PMID:28184437
Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity.
PMID:28178237
The Evolution of LINE-1 in Vertebrates.
PMID:28175298
Dicer, a new regulator of pluripotency exit and LINE-1 elements in mouse embryonic stem cells.
PMID:28174687
Hypermethylated LTR retrotransposon exhibits enhancer activity.
PMID:28165867
Genome-wide mining and comparative analysis of microsatellites in three macaque species.
PMID:28160080
Silencing of endogenous retroviruses by heterochromatin.
PMID:28160052
Evolution and Diversity of Transposable Elements in Vertebrate Genomes.
PMID:28158585
What's in a name? Context-dependent significance of 'global' methylation measures in human health and disease.
PMID:28149330
MISTIC-fusion proteins as antigens for high quality membrane protein antibodies.
PMID:28148968
Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide.
PMID:28145450
CRISPR applications in ophthalmologic genome surgery.
PMID:28141764
Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome.
PMID:28138342
Evolving health care through personal genomics.
PMID:28138143
Long non-coding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function.
PMID:28132025
Genetic Disorders of Dental Development: Tales from the Bony Crypt.
PMID:28124261
Lifestyle and precision diabetes medicine: will genomics help optimise the prediction, prevention and treatment of type 2 diabetes through lifestyle therapy?
PMID:28124081
Association of new deletion/duplication region at chromosome 1p21 with intellectual disability, severe speech deficit and autism spectrum disorder-like behavior: an all-in approach to solving the DPYD enigma.
PMID:28123791
How close are we to complete annotation of metabolomes?
PMID:28113135
Recent advances in understanding neuropathic pain: glia, sex differences, and epigenetics.
PMID:28105313
Concise Review: Induced Pluripotent Stem Cell Research in the Era of Precision Medicine.
PMID:28100040
Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer.
PMID:28096347
Cryptosporidium hominis gene catalog: a resource for the selection of novel Cryptosporidium vaccine candidates.
PMID:28095366
Paracoccidioides spp. catalases and their role in antioxidant defense against host defense responses.
PMID:28093309
GExplore 1.4: An expanded web interface for queries on Caenorhabditis elegans protein and gene function.
PMID:28090394
The future of transposable element annotation and their classification in the light of functional genomics - what we can learn from the fables of Jean de la Fontaine?
PMID:28090383
Transposable elements and circular DNAs.
PMID:28090380
Clinical and biological insights from viral genome sequencing.
PMID:28090077
Single genome retrieval of context-dependent variability in mutation rates for human germline.
PMID:28086752
Molecular Evolution of piggyBac Superfamily: From Selfishness to Domestication.
PMID:28082605
Computational Prediction of the Global Functional Genomic Landscape: Applications, Methods, and Challenges.
PMID:28076869
The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes.
PMID:28076790
Human Endogenous Retroviruses-K (HML-2) Expression Is Correlated with Prognosis and Progress of Hepatocellular Carcinoma.
PMID:28070518
Effects of Replication and Transcription on DNA Structure-Related Genetic Instability.
PMID:28067787
Genetic conflicts: the usual suspects and beyond.
PMID:28057823
Insertion Polymorphisms of Mobile Genetic Elements in Sexual and Asexual Populations of Daphnia pulex.
PMID:28057730
Exploring the Underlying Genetics of Craniofacial Morphology through Various Sources of Knowledge.
PMID:28053980
Short intron-derived ncRNAs.
PMID:28053119
The Nucleotide Excision Repair Pathway Limits L1 Retrotransposition.
PMID:28049704
Advancement of the Emerging Field of RNA Nanotechnology.
PMID:28045501
Tumor LINE-1 Methylation Level in Association with Survival of Patients with Stage II Colon Cancer.
PMID:28035987
Novel Role of 3'UTR-Embedded Alu Elements as Facilitators of Processed Pseudogene Genesis and Host Gene Capture by Viral Genomes.
PMID:28033411
Barriers to Infection of Human Cells by Feline Leukemia Virus: Insights into Resistance to Zoonosis.
PMID:28031367
GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics.
PMID:28025344
Combined microfluidic-optical DNA analysis with single-base-pair sizing capability.
PMID:28018736
Friend or Foe: Epigenetic Regulation of Retrotransposons in Mammalian Oogenesis and Early Development.
PMID:28018140
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.
PMID:28011790
EhNPC1 and EhNPC2 Proteins Participate in Trafficking of Exogenous Cholesterol in Entamoeba histolytica Trophozoites: Relevance for Phagocytosis.
PMID:28002502
The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells.
PMID:27999094
Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements.
PMID:27998931
Useful parasites: the evolutionary biology and biotechnology applications of transposable elements.
PMID:27994207
Perspectives on the history of evo-devo and the contemporary research landscape in the genomics era.
PMID:27994116
The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation.
PMID:27980690
Endogenous retroviral promoter exaptation in human cancer.
PMID:27980689
Performance evaluation for rapid detection of pan-cancer microsatellite instability with MANTIS.
PMID:27980218
Efficient Breeding by Genomic Mating.
PMID:27965707
Engineered LINE-1 retrotransposition in nondividing human neurons.
PMID:27965292
Alternate-locus aware variant calling in whole genome sequencing.
PMID:27964746
Prognostic and predictive significance of long interspersed nucleotide element-1 methylation in advanced-stage colorectal cancer.
PMID:27955637
Development of an in vitro human liver system for interrogating nonalcoholic steatohepatitis.
PMID:27942596
Incorporate gene signature profiling into routine molecular testing.
PMID:27942443
Tools for Sequence-Based miRNA Target Prediction: What to Choose?
PMID:27941681
High-Throughput Next-Generation Sequencing of Polioviruses.
PMID:27927929
L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes.
PMID:27924012
Pseudogenes and Their Genome-Wide Prediction in Plants.
PMID:27916797
Replication stalling and DNA microsatellite instability.
PMID:27914716
Molecular mechanism of hepatitis B virus (HBV) on suppression of raf kinase inhibitor protein (RKIP) expression.
PMID:27902472
Patterns of Transposable Element Expression and Insertion in Cancer.
PMID:27900322
The BIG Data Center: from deposition to integration to translation.
PMID:27899658
A comprehensive approach to expression of L1 loci.
PMID:27899577
Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda.
PMID:27897175
Blood-based DNA methylation as biomarker for breast cancer: a systematic review.
PMID:27895805
Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights.
PMID:27893794
An RB-EZH2 Complex Mediates Silencing of Repetitive DNA Sequences.
PMID:27889452
ProtLID, a Residue-Based Pharmacophore Approach to Identify Cognate Protein Ligands in the Immunoglobulin Superfamily.
PMID:27889206
An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes.
PMID:27882922
Phylogenetic Diversity of Koala Retrovirus within a Wild Koala Population.
PMID:27881645
Toward a new paradigm of DNA writing using a massively parallel sequencing platform and degenerate oligonucleotide.
PMID:27876825
Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data.
PMID:27875984
The impact of transposable elements on mammalian development.
PMID:27875251
Expanding Diversity in Molecular Structures and Functions of the IL-6/IL-12 Heterodimeric Cytokine Family.
PMID:27867385
Regulatory activities of transposable elements: from conflicts to benefits.
PMID:27867194
From profiles to function in epigenomics.
PMID:27867193
Bringing It All Together: Coupling Excision Repair to the DNA Damage Checkpoint.
PMID:27861980
The Role of Next-Generation Sequencing in Enabling Personalized Oncology Therapy.
PMID:27860319
Gene Therapy for Metabolic Diseases.
PMID:27853673
Non-coding RNAs match the deleted genomic regions in humans.
PMID:27853310
CORALINA: a universal method for the generation of gRNA libraries for CRISPR-based screening.
PMID:27842490
False positives and false negatives measure less than 0.001% in labeling ssDNA with osmium tetroxide 2,2'-bipyridine.
PMID:27826518
Regulation of disease-associated gene expression in the 3D genome.
PMID:27826147
A Method for the Annotation of Functional Similarities of Coding DNA Sequences: the Case of a Populated Cluster of Transmembrane Proteins.
PMID:27812751
The PARA-suite: PAR-CLIP specific sequence read simulation and processing.
PMID:27812418
Identification of Binding Targets of a Pyrrole-Imidazole Polyamide KR12 in the LS180 Colorectal Cancer Genome.
PMID:27798693
Co-existence of BRAF and NRAS driver mutations in the same melanoma cells results in heterogeneity of targeted therapy resistance.
PMID:27791198
Genetics of rheumatoid arthritis: GWAS and beyond.
PMID:27790002
Computational pan-genomics: status, promises and challenges.
PMID:27769991
Sequencing and de novo assembly of the Asian gypsy moth transcriptome using the Illumina platform.
PMID:27768153
Cardiac disease and arrhythmogenesis: Mechanistic insights from mouse models.
PMID:27766308
A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule.
PMID:27751184
Epigenetic Aspects of Systemic Lupus Erythematosus.
PMID:27747498
SVA retrotransposons as potential modulators of neuropeptide gene expression.
PMID:27743609
Comparative Principles of DNA Methylation Reprogramming during Human and Mouse In Vitro Primordial Germ Cell Specification.
PMID:27728778
Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions.
PMID:27708261
Identification and Characterization of Small Noncoding RNAs in Genome Sequences of the Edible Fungus Pleurotus ostreatus.
PMID:27703969
OAHG: an integrated resource for annotating human genes with multi-level ontologies.
PMID:27703231
LINEs between Species: Evolutionary Dynamics of LINE-1 Retrotransposons across the Eukaryotic Tree of Life.
PMID:27702814
The Hoops, Hopes, and Hypes of Human Microbiome Research.
PMID:27698620
An Ecological Framework of the Human Virome Provides Classification of Current Knowledge and Identifies Areas of Forthcoming Discovery.
PMID:27698618
Rad51 and Rad54 promote noncrossover recombination between centromere repeats on the same chromatid to prevent isochromosome formation.
PMID:27697832
Elements in the Development of a Production Process for Modified Vaccinia Virus Ankara.
PMID:27694766
Impact of the Autism-Associated Long Noncoding RNA MSNP1AS on Neuronal Architecture and Gene Expression in Human Neural Progenitor Cells.
PMID:27690106
Laboratory Medicine in the Scope of Proteomics and Genomics.
PMID:27683374
Reconstructing Demography and Social Behavior During the Neolithic Expansion from Genomic Diversity Across Island Southeast Asia.
PMID:27683274
The possible roles of B-cell novel protein-1 (BCNP1) in cellular signalling pathways and in cancer.
PMID:27680505
Advances in diagnostics for transplant rejection.
PMID:27677432
Cervantes and Quijote protect heterochromatin from aberrant recombination and lead the way to the nuclear periphery.
PMID:27673416
Chocó, Colombia: a hotspot of human biodiversity.
PMID:27668076
Antisense Oligonucleotides Modulating Activation of a Nonsense-Mediated RNA Decay Switch Exon in the ATM Gene.
PMID:27658045
Endogenous retroviruses mobilized during friend murine leukemia virus infection.
PMID:27657834
Computational Evaluation of the Strict Master and Random Template Models of Endogenous Retrovirus Evolution.
PMID:27649303
Omics-Based Strategies in Precision Medicine: Toward a Paradigm Shift in Inborn Errors of Metabolism Investigations.
PMID:27649151
Oxford Nanopore MinION Sequencing and Genome Assembly.
PMID:27646134
Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos.
PMID:27639284
Annotating the Function of the Human Genome with Gene Ontology and Disease Ontology.
PMID:27635398
The Flow of the Gibbon LAVA Element Is Facilitated by the LINE-1 Retrotransposition Machinery.
PMID:27635049
Selection on Position of Nonsense Codons in Introns.
PMID:27630196
Identifying Nuclear Matrix-Attached DNA Across the Genome.
PMID:27627025
FBW7 suppression leads to SOX9 stabilization and increased malignancy in medulloblastoma.
PMID:27625374
Technological advances in precision medicine and drug development.
PMID:27622214
Great expectations - Epigenetics and the meandering path from bench to bedside.
PMID:27621117
The 2016 Lasker~Koshland Special Achievement Award recognizes Bruce Alberts' lifelong dedication to research, policy, and education.
PMID:27620537
De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin.
PMID:27618997
Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing.
PMID:27617755
Non-alcoholic fatty liver and the gut microbiota.
PMID:27617201
Contribution of type W human endogenous retroviruses to the human genome: characterization of HERV-W proviral insertions and processed pseudogenes.
PMID:27613107
Whole Genome Mapping with Feature Sets from High-Throughput Sequencing Data.
PMID:27611682
Human Contamination in Public Genome Assemblies.
PMID:27611326
Current Status of Long Non-Coding RNAs in Human Breast Cancer.
PMID:27608009
A Retrospective Analysis of Precision Medicine Outcomes in Patients With Advanced Cancer Reveals Improved Progression-Free Survival Without Increased Health Care Costs.
PMID:27601506
Silencing transposable elements in the Drosophila germline.
PMID:27600679
Strategies for Genomic and Proteomic Profiling of Cancers.
PMID:27594925
Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population.
PMID:27589963
The function of homeobox genes and lncRNAs in cancer.
PMID:27588114
ANGIOGENES: knowledge database for protein-coding and noncoding RNA genes in endothelial cells.
PMID:27582018
Identifying wrong assemblies in de novo short read primary sequence assembly contigs.
PMID:27581937
Role of pharmacogenetics in public health and clinical health care: a SWOT analysis.
PMID:27577547
Regulation of CTNNB1 signaling in gastric cancer and stem cells.
PMID:27574551
Circular RNAs: Unexpected outputs of many protein-coding genes.
PMID:27571848
The science commons in health research: structure, function, and value.
PMID:27570367
Tumor Touch Imprints as Source for Whole Genome Analysis of Neuroblastoma Tumors.
PMID:27560999
An Optimal Seed Based Compression Algorithm for DNA Sequences.
PMID:27555868
In silico identification of lysocin biosynthetic gene cluster from Lysobacter sp. RH2180-5.
PMID:27553855
A preliminary review of influential works in data-driven discovery.
PMID:27540499
Improving the Flexibility of RNA-Seq Data Analysis Pipelines.
PMID:27536420
The Astrobiology Primer v2.0.
PMID:27532777
Inference of Ancestral Recombination Graphs through Topological Data Analysis.
PMID:27532298
A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins.
PMID:27532255
Detection of cis- and trans-acting Factors in DNA Structure-Induced Genetic Instability Using In silico and Cellular Approaches.
PMID:27532010
Exploring cancer genomic data from the cancer genome atlas project.
PMID:27530686
The Ribonuclease A Superfamily in Humans: Canonical RNases as the Buttress of Innate Immunity.
PMID:27527162
Restricting retrotransposons: a review.
PMID:27525044
Benchmarking computational tools for polymorphic transposable element detection.
PMID:27524380
Structure and regulation of human troponin genes.
PMID:27520667
IRWRLDA: improved random walk with restart for lncRNA-disease association prediction.
PMID:27517318
Pharmacometabolomics informs Pharmacogenomics.
PMID:27516730
Prevalent Accumulation of Non-Optimal Codons through Somatic Mutations in Human Cancers.
PMID:27513638
Beyond Endometriosis Genome-Wide Association Study: From Genomics to Phenomics to the Patient.
PMID:27513026
Transposable elements and miRNA: Regulation of genomic stability and plasticity.
PMID:27511122
The transposable element environment of human genes is associated with histone and expression changes in cancer.
PMID:27506777
The Role of Retrotransposons in Gene Family Expansions in the Human and Mouse Genomes.
PMID:27503295
Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: a prospective nested case-control study.
PMID:27490804
Pinpointing the vesper bat transposon revolution using the Miniopterus natalensis genome.
PMID:27489570
Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences.
PMID:27488939
Imagining Sisyphus happy: DNA barcoding and the unnamed majority.
PMID:27481781
A novel human-specific splice isoform alters the critical C-terminus of Survival Motor Neuron protein.
PMID:27481219
Multiscale Modeling of Cellular Epigenetic States: Stochasticity in Molecular Networks, Chromatin Folding in Cell Nuclei, and Tissue Pattern Formation of Cells.
PMID:27480462
The bright side of dark matter: lncRNAs in cancer.
PMID:27479746
Evidence of selection for an accessible nucleosomal array in human.
PMID:27472913
In Vivo and In Vitro Genotoxic and Epigenetic Effects of Two Types of Cola Beverages and Caffeine: A Multiassay Approach.
PMID:27471731
Existence of Two Distinct Infectious Endogenous Retroviruses in Domestic Cats and Their Different Strategies for Adaptation to Transcriptional Regulation.
PMID:27466428
MR1 discovery.
PMID:27464703
A Canonical Correlation Analysis of AIDS Restriction Genes and Metabolic Pathways Identifies Purine Metabolism as a Key Cooperator.
PMID:27462363
Reprogramming, Circular Reasoning and Self versus Non-self: One-Stop Shopping with RNA Editing.
PMID:27458478
Tissue homogeneity requires inhibition of unequal gene silencing during development.
PMID:27458132
Aberrant DNA methylation reprogramming in bovine SCNT preimplantation embryos.
PMID:27456302
Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks.
PMID:27455841
Splicing variants of ADAR2 and ADAR2-mediated RNA editing in glioma.
PMID:27446352
Expression of evolutionarily novel genes in tumors.
PMID:27437030
Liquid biopsy in patients with pancreatic cancer: Circulating tumor cells and cell-free nucleic acids.
PMID:27433079
Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs.
PMID:27431325
LncRNAs in pancreatic cancer.
PMID:27429196
APOBEC3DE Inhibits LINE-1 Retrotransposition by Interacting with ORF1p and Influencing LINE Reverse Transcriptase Activity.
PMID:27428332
On the pathogenesis of insulin-dependent diabetes mellitus: the role of microbiota.
PMID:27421719
Zinc finger proteins in cancer progression.
PMID:27411336
Transfer of DNA from Bacteria to Eukaryotes.
PMID:27406565
CTRL+INSERT: retrotransposons and their contribution to regulation and innovation of the transcriptome.
PMID:27402545
Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.
PMID:27401172
Chromatin variation associated with liver metabolism is mediated by transposable elements.
PMID:27398095
Preferential Protection of Genetic Fidelity within Open Chromatin by the Mismatch Repair Machinery.
PMID:27382058
The Grand Challenge of Characterizing Ribonucleoprotein Networks.
PMID:27376072
Comments and General Discussion on "The Anatomical Problem Posed by Brain Complexity and Size: A Potential Solution".
PMID:27375436
[Treat to target and personalized medicine (precision medicine)].
PMID:27365026
Unraveling the message: insights into comparative genomics of the naked mole-rat.
PMID:27364349
Comprehensive analysis of lncRNAs microarray profile and mRNA-lncRNA co-expression in oncogenic HPV-positive cervical cancer cell lines.
PMID:27363024
Reverse transcriptase and intron number evolution.
PMID:27358863
Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads.
PMID:27354512
Inherited platelet disorders: Insight from platelet genomics using next-generation sequencing.
PMID:27348543
Long non-coding RNAs and complex diseases: from experimental results to computational models.
PMID:27345524
Mitochondrial Epigenetics and Environmental Exposure.
PMID:27344144
Integrated small copy number variations and epigenome maps of disorders of sex development.
PMID:27340555
The second decade of 3C technologies: detailed insights into nuclear organization.
PMID:27340173
Goodbye genome paper, hello genome report: the increasing popularity of 'genome announcements' and their impact on science.
PMID:27339634
The value of genomics in dissecting the RAS-network and in guiding therapeutics for RAS-driven cancers.
PMID:27338857
Nothing in Evolution Makes Sense Except in the Light of Genomics: Read-Write Genome Evolution as an Active Biological Process.
PMID:27338490
MiR-4638-5p inhibits castration resistance of prostate cancer through repressing Kidins220 expression and PI3K/AKT pathway activity.
PMID:27329728
Mammal madness: is the mammal tree of life not yet resolved?
PMID:27325836
Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data.
PMID:27325835
IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity.
PMID:27323856
FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model.
PMID:27322210
Computational Tools for Stem Cell Biology.
PMID:27318512
Repetitive element hypermethylation in multiple sclerosis patients.
PMID:27317098
Polymorphic Alu Insertion/Deletion in Different Caste and Tribal Populations from South India.
PMID:27315142
The Impact of Evolutionary Driving Forces on Human Complex Diseases: A Population Genetics Approach.
PMID:27313952
Evaluation of Bioinformatic Programmes for the Analysis of Variants within Splice Site Consensus Regions.
PMID:27313609
Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis.
PMID:27309962
The Epithelial-to-Mesenchymal Transition (EMT), a Particular Case.
PMID:27308335
phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats.
PMID:27307619
Prediction of ribosome footprint profile shapes from transcript sequences.
PMID:27307616
DMET™ (Drug Metabolism Enzymes and Transporters): a pharmacogenomic platform for precision medicine.
PMID:27304055
Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.
PMID:27297499
PiggyBac transposon-based polyadenylation-signal trap for genome-wide mutagenesis in mice.
PMID:27292714
Selection pressure on human STR loci and its relevance in repeat expansion disease.
PMID:27290643
The genetic heterogeneity of colorectal cancer predisposition - guidelines for gene discovery.
PMID:27279102
Ancient DNA and human history.
PMID:27274045
De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes.
PMID:27257545
CRISPR/Cas9 therapeutics: a cure for cancer and other genetic diseases.
PMID:27250031
The Clustered, Regularly Interspaced, Short Palindromic Repeats-associated Endonuclease 9 (CRISPR/Cas9)-created MDM2 T309G Mutation Enhances Vitreous-induced Expression of MDM2 and Proliferation and Survival of Cells.
PMID:27246850
Genome stability versus transcript diversity.
PMID:27246512
Global methylation, oxidative stress, and relative telomere length in biliary atresia patients.
PMID:27243754
New Trends in Aryl Hydrocarbon Receptor Biology.
PMID:27243009
Links between Human LINE-1 Retrotransposons and Hepatitis Virus-Related Hepatocellular Carcinoma.
PMID:27242996
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods.
PMID:27242037
Lineage-specific genomics: Frequent birth and death in the human genome: The human genome contains many lineage-specific elements created by both sequence and functional turnover.
PMID:27231054
LncRNApred: Classification of Long Non-Coding RNAs and Protein-Coding Transcripts by the Ensemble Algorithm with a New Hybrid Feature.
PMID:27228152
Decoding transcriptional enhancers: Evolving from annotation to functional interpretation.
PMID:27224938
Clinical genomics: from a truly personal genome viewpoint.
PMID:27221143
Processing and transcriptome expansion at the mRNA 3' end in health and disease: finding the right end.
PMID:27220521
Prenatal Air Pollution Exposures, DNA Methyl Transferase Genotypes, and Associations with Newborn LINE1 and Alu Methylation and Childhood Blood Pressure and Carotid Intima-Media Thickness in the Children's Health Study.
PMID:27219456
DNA methylation by DNMT1 and DNMT3b methyltransferases is driven by the MUC1-C oncoprotein in human carcinoma cells.
PMID:27212035
Identification of human RNA editing sites: A historical perspective.
PMID:27208508
The Brugada Syndrome: A Rare Arrhythmia Disorder with Complex Inheritance.
PMID:27200363
Retroviral DNA Integration.
PMID:27198982
Endogenous Transposase Source in Human Cells Mobilizes piggyBac Transposons.
PMID:27198853
A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer.
PMID:27197217
Challenges of Identifying Clinically Actionable Genetic Variants for Precision Medicine.
PMID:27195526
X-Linked Candidate Genes for a Ciliopathy-Like Disorder.
PMID:27194972
Conservation and Innovation of APOBEC3A Restriction Functions during Primate Evolution.
PMID:27189538
LTR12 promoter activation in a broad range of human tumor cells by HDAC inhibition.
PMID:27172897
P53 and the defenses against genome instability caused by transposons and repetitive elements.
PMID:27172878
Angiotensin II receptors and peritoneal dialysis-induced peritoneal fibrosis.
PMID:27167177
Genomic Approaches to Zebrafish Cancer.
PMID:27165352
CNS repair and axon regeneration: Using genetic variation to determine mechanisms.
PMID:27163547
Next-generation sequencing-based detection of germline L1-mediated transductions.
PMID:27161561
Transposable elements in the mammalian embryo: pioneers surviving through stealth and service.
PMID:27161170
Genomic analysis of mouse VL30 retrotransposons.
PMID:27158269
Roles for retrotransposon insertions in human disease.
PMID:27158268
What are We Learning and What Can We Learn from the Human Oral Microbiome Project?
PMID:27152251
The potential for liquid biopsies in the precision medical treatment of breast cancer.
PMID:27144060
The Dark Side of Cell Fusion.
PMID:27136533
Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch.
PMID:27136077
Redundans: an assembly pipeline for highly heterozygous genomes.
PMID:27131372
Genes and Small RNA Transcripts Exhibit Dosage-Dependent Expression Pattern in Maize Copy-Number Alterations.
PMID:27129738
A Protein Domain and Family Based Approach to Rare Variant Association Analysis.
PMID:27128313
piR-651 and its function in 95-D lung cancer cells.
PMID:27123245
Next-Generation Sequencing in the Genetics of Human Atrial Fibrillation.
PMID:27122724
Generation, Characterization and Application of Antibodies Directed against HERV-H Gag Protein in Colorectal Samples.
PMID:27119520
Metabolomics in epidemiology: from metabolite concentrations to integrative reaction networks.
PMID:27118561
Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine.
PMID:27110816
Non-negligible Occurrence of Errors in Gender Description in Public Data Sets.
PMID:27103889
Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products.
PMID:27100228
The endonuclease domain of the LINE-1 ORF2 protein can tolerate multiple mutations.
PMID:27099633
Alu SINE analyses of 3,000-year-old human skeletal remains: a pilot study.
PMID:27096009
Exosomes: The Link between GPCR Activation and Metastatic Potential?
PMID:27092178
Using an integrative approach to investigate the evolution of behaviour.
PMID:27087846
Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved.
PMID:27084945
Epigenetic regulation of bone cells.
PMID:27082893
iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing.
PMID:27081555
Identification of novel exonic mobile element insertions in epithelial ovarian cancers.
PMID:27081539
Evolution of Epigenetic Regulation in Vertebrate Genomes.
PMID:27080453
Incidentalome from Genomic Sequencing: A Barrier to Personalized Medicine?
PMID:27077130
Stress out the LINEs.
PMID:27066303
The challenge of ORF1p phosphorylation: Effects on L1 activity and its host.
PMID:27066302
Anchored pseudo-de novo assembly of human genomes identifies extensive sequence variation from unmapped sequence reads.
PMID:27061184
Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.
PMID:27060133
23andMe: a new two-sided data-banking market model.
PMID:27059184
What is translational bioinformatics?
PMID:27054069
RNA Sequencing in Schizophrenia.
PMID:27053919
Introducing precise genetic modifications into human 3PN embryos by CRISPR/Cas-mediated genome editing.
PMID:27052831
Associations and prognostic implications of Eastern Cooperative Oncology Group performance status and tumoral LINE-1 methylation status in stage III colon cancer patients.
PMID:27051466
Retrotransposon-associated long non-coding RNAs in mice and men.
PMID:27044413
Active recombinant Tol2 transposase for gene transfer and gene discovery applications.
PMID:27042235
No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.
PMID:27035985
Alu methylation serves as a biomarker for non-invasive diagnosis of glioma.
PMID:27028997
ILNCSIM: improved lncRNA functional similarity calculation model.
PMID:27028993
Immune responses to endogenous retroelements: taking the bad with the good.
PMID:27026073
LINE-1 distribution in six rodent genomes follow a species-specific pattern.
PMID:27019429
Natural Selection and Genetic Diversity in the Butterfly Heliconius melpomene.
PMID:27017626
Post-Transcriptional Control of LINE-1 Retrotransposition by Cellular Host Factors in Somatic Cells.
PMID:27014690
To be an author.
PMID:27011823
The Gene Expression Omnibus Database.
PMID:27008011
Unraveling the evolutionary scenario of the hobo element in populations of Drosophila melanogaster and D. simulans in South America using the TPE repeats as markers.
PMID:27007908
Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues.
PMID:27003935
ROBO2 gene variants in children with primary nonsyndromic vesicoureteral reflux with or without renal hypoplasia/dysplasia.
PMID:27002985
What Next in Schizophrenia Genetics for the Psychiatric Genomics Consortium?
PMID:26994396
The Anolis Lizard Genome: An Amniote Genome without Isochores?
PMID:26992416
Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome.
PMID:26992093
Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus.
PMID:26989998
Horizontal transfer of β-carbonic anhydrase genes from prokaryotes to protozoans, insects, and nematodes.
PMID:26983858
Suppressing H19 Modulates Tumorigenicity and Stemness in U251 and U87MG Glioma Cells.
PMID:26983719
Next generation sequencing (NGS) database for tandem repeats with multiple pattern 2°-shaft multicore string matching.
PMID:26981434
Recurrent Gene Duplication Diversifies Genome Defense Repertoire in Drosophila.
PMID:26979388
Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells.
PMID:26974322
Prp8 retinitis pigmentosa mutants cause defects in the transition between the catalytic steps of splicing.
PMID:26968627
Heavy Metal Exposure Influences Double Strand Break DNA Repair Outcomes.
PMID:26966913
Identification and Analysis of the Role of Superoxide Dismutases Isoforms in the Pathogenesis of Paracoccidioides spp.
PMID:26963091
Blood-Borne Pathogens: A Canadian Blood Services Centre for Innovation Symposium.
PMID:26962008
Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals.
PMID:26952212
Estrogen Receptor Alpha (ESR1) Single-Nucleotide Polymorphisms (SNPs) Affect Malignant Melanoma Susceptibility and Disease Course.
PMID:26949342
Contemporary views on the genetics of anorexia nervosa.
PMID:26944296
LINE retrotransposition and host DNA repair machinery.
PMID:26942045
Alu elements and DNA double-strand break repair.
PMID:26942043
Regulatory evolution of innate immunity through co-option of endogenous retroviruses.
PMID:26941318
Forty years of The Selfish Gene are not enough.
PMID:26936472
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.
PMID:26936254
Modeling congenital disease and inborn errors of development in Drosophila melanogaster.
PMID:26935104
Personalised cancer care: promises and challenges of targeted therapy.
PMID:26933155
DNA methylation in human epigenomes depends on local topology of CpG sites.
PMID:26932361
Gene Variant Databases and Sharing: Creating a Global Genomic Variant Database for Personalized Medicine.
PMID:26931283
Mechanisms underlying structural variant formation in genomic disorders.
PMID:26924765
Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing.
PMID:26922242
Transcriptome Analysis in Domesticated Species: Challenges and Strategies.
PMID:26917953
Discovery of a new repeat family in the Callithrix jacchus genome.
PMID:26916108
Retrotransposons as regulators of gene expression.
PMID:26912865
Human genetic variation database, a reference database of genetic variations in the Japanese population.
PMID:26911352
Atlas of Cryptic Genetic Relatedness Among 1000 Human Genomes.
PMID:26907499
The Reverse Transcriptase Encoded by LINE-1 Retrotransposons in the Genesis, Progression, and Therapy of Cancer.
PMID:26904537
Ensembl comparative genomics resources.
PMID:26896847
LEAP: L1 Element Amplification Protocol.
PMID:26895063
Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.
PMID:26895059
LINE-1 Cultured Cell Retrotransposition Assay.
PMID:26895052
DNA methylation variation of human-specific Alu repeats.
PMID:26890526
A protein constructed de novo enables cell growth by altering gene regulation.
PMID:26884172
Managing risks in drug discovery: reproducibility of published findings.
PMID:26883784
Alu retrotransposons promote differentiation of human carcinoma cells through the aryl hydrocarbon receptor.
PMID:26883630
Molecular features of cellular reprogramming and development.
PMID:26883001
Unravelling the human genome-phenome relationship using phenome-wide association studies.
PMID:26875678
A Biologist's Field Guide to Multiplexed Quantitative Proteomics.
PMID:26873251
MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals.
PMID:26872770
A benchmark study on error-correction by read-pairing and tag-clustering in amplicon-based deep sequencing.
PMID:26868371
Curated eutherian third party data gene data sets.
PMID:26862561
The contribution of transposable elements to size variations between four teleost genomes.
PMID:26862351
Biochemistry and physiology within the framework of the extended synthesis of evolutionary biology.
PMID:26861860
Enrichment analysis of Alu elements with different spatial chromatin proximity in the human genome.
PMID:26861146
Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus.
PMID:26860923
Quantification of unmethylated Alu (QUAlu): a tool to assess global hypomethylation in routine clinical samples.
PMID:26859682
Feature co-localization landscape of the human genome.
PMID:26854351
Graphene nanodevices for DNA sequencing.
PMID:26839258
Decoding DNA, RNA and peptides with quantum tunnelling.
PMID:26839257
When Medicine Meets Engineering-Paradigm Shifts in Diagnostics and Therapeutics.
PMID:26835672
SncRNA (microRNA &snoRNA) opposite expression pattern found in multiple sclerosis relapse and remission is sex dependent.
PMID:26831009
Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility.
PMID:26818075
An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cells.
PMID:26814573
Impact of host genetic polymorphisms on vaccine induced antibody response.
PMID:26809773
Classification and characterization of human endogenous retroviruses; mosaic forms are common.
PMID:26800882
Next-generation sequencing as an approach to dairy starter selection.
PMID:26798445
detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes.
PMID:26795595
Discordant Haplotype Sequencing Identifies Functional Variants at the 2q33 Breast Cancer Risk Locus.
PMID:26795348
Human Endogenous Retroviruses as Pathogenic Factors in the Development of Schizophrenia.
PMID:26793126
Infectious Entry Pathway Mediated by the Human Endogenous Retrovirus K Envelope Protein.
PMID:26792739
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.
PMID:26780094
Genomic landscapes of endogenous retroviruses unveil intricate genetics of conventional and genetically-engineered laboratory mouse strains.
PMID:26779669
Insertion of Retrotransposons at Chromosome Ends: Adaptive Response to Chromosome Maintenance.
PMID:26779254
Transposable Elements, Polydactyl Proteins, and the Genesis of Human-Specific Transcription Networks.
PMID:26763983
Different Facets of Copy Number Changes: Permanent, Transient, and Adaptive.
PMID:26755558
A Molecular Perspective on Procedures and Outcomes with Assisted Reproductive Technologies.
PMID:26747835
Experimental methods to preserve male fertility and treat male factor infertility.
PMID:26746133
Crossing the LINE Toward Genomic Instability: LINE-1 Retrotransposition in Cancer.
PMID:26734601
Pathway Analysis: State of the Art.
PMID:26733877
Diagnosis of D-Bifunctional Protein Deficiency through Whole-Genome Sequencing: Implications for Cost-Effective Care.
PMID:26733776
In Silico Functional Annotation of Genomic Variation.
PMID:26724722
Transposable element detection from whole genome sequence data.
PMID:26719777
Enhanced expression of LINE-1-encoded ORF2 protein in early stages of colon and prostate transformation.
PMID:26716650
Insulated Foamy Viral Vectors.
PMID:26715244
Linking short tandem repeat polymorphisms with cytosine modifications in human lymphoblastoid cell lines.
PMID:26714498
Gene therapy: progress and predictions.
PMID:26702034
Milk: an epigenetic amplifier of FTO-mediated transcription? Implications for Western diseases.
PMID:26691922
Horizontal functional gene transfer from bacteria to fishes.
PMID:26691285
Comparing genetic variants detected in the 1000 genomes project with SNPs determined by the International HapMap Consortium.
PMID:26690529
5th International ACC Symposium: The New Genetics of Benign Adrenocortical Neoplasia: Hyperplasias, Adenomas, and Their Implications for Progression into Cancer.
PMID:26684645
A Small RNA-Based Immune System Defends Germ Cells against Mobile Genetic Elements.
PMID:26681955
Somatic mosaicism: on the road to cancer.
PMID:26678315
Estradiol differentially induces progesterone receptor isoforms expression through alternative promoter regulation in a mouse embryonic hypothalamic cell line.
PMID:26676302
Circulating long noncoding RNA GAS5 levels are correlated to prevalence of type 2 diabetes mellitus.
PMID:26675493
L1 retrotransposition requires rapid ORF1p oligomerization, a novel coiled coil-dependent property conserved despite extensive remodeling.
PMID:26673717
Expressed Sequence Tags Analysis and Design of Simple Sequence Repeats Markers from a Full-Length cDNA Library in Perilla frutescens (L.).
PMID:26664999
Circulating nucleic acids: a new class of physiological mobile genetic elements.
PMID:26664710
Evolution of Nine Microsatellite Loci in the Fungus Fusarium oxysporum.
PMID:26661928
Exercise-conditioned plasma attenuates nuclear concentrations of DNA methyltransferase 3B in human peripheral blood mononuclear cells.
PMID:26660547
The domain structure and distribution of Alu elements in long noncoding RNAs and mRNAs.
PMID:26654912
Comparative genomic analysis of eutherian tumor necrosis factor ligand genes.
PMID:26646413
Systems Genetic Validation of the SNP-Metabolite Association in Rice Via Metabolite-Pathway-Based Phenome-Wide Association Scans.
PMID:26640468
Segmenting the Human Genome into Isochores.
PMID:26640363
RNA Sequence Analysis of Human Huntington Disease Brain Reveals an Extensive Increase in Inflammatory and Developmental Gene Expression.
PMID:26636579
Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes.
PMID:26635396
Progress and challenges in bioinformatics approaches for enhancer identification.
PMID:26634919
Metagenomic Classification Using an Abstraction Augmented Markov Model.
PMID:26618474
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages.
PMID:26613339
Obesity-induced sperm DNA methylation changes at satellite repeats are reprogrammed in rat offspring.
PMID:26608942
microRNAs as neuroregulators, biomarkers and therapeutic agents in neurodegenerative diseases.
PMID:26608596
The PsychENCODE project.
PMID:26605881
Aquatic adaptation and the evolution of smell and taste in whales.
PMID:26605054
Transcriptome networks in the mouse retina: An exon level BXD RI database.
PMID:26604663
Multinational teams and diseconomies of scale in collaborative research.
PMID:26601251
Evolution and Biological Roles of Alternative 3'UTRs.
PMID:26597575
Transcriptomics of diapause in an isogenic self-fertilizing vertebrate.
PMID:26597228
Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain.
PMID:26590212
A 3' Poly(A) Tract Is Required for LINE-1 Retrotransposition.
PMID:26585388
Infection-Induced Retrotransposon-Derived Noncoding RNAs Enhance Herpesviral Gene Expression via the NF-κB Pathway.
PMID:26584434
Ancestral Mutations Acquired in Refrex-1, a Restriction Factor against Feline Retroviruses, during its Cooption and Domestication.
PMID:26581999
What might retrotransposons teach us about aging?
PMID:26581630
Suppression of the Arboviruses Dengue and Chikungunya Using a Dual-Acting Group-I Intron Coupled with Conditional Expression of the Bax C-Terminal Domain.
PMID:26580561
Transposable element polymorphisms recapitulate human evolution.
PMID:26579215
Death of a dogma: eukaryotic mRNAs can code for more than one protein.
PMID:26578573
KATZLDA: KATZ measure for the lncRNA-disease association prediction.
PMID:26577439
Adaptive Evolution Coupled with Retrotransposon Exaptation Allowed for the Generation of a Human-Protein-Specific Coding Gene That Promotes Cancer Cell Proliferation and Metastasis in Both Haematological Malignancies and Solid Tumours: The Extraordinary Case of MYEOV Gene.
PMID:26568894
Are Synonymous Sites in Primates and Rodents Functionally Constrained?
PMID:26563252
Cross-Species Transmission and Differential Fate of an Endogenous Retrovirus in Three Mammal Lineages.
PMID:26562410
The sequence of sequencers: The history of sequencing DNA.
PMID:26554401
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
PMID:26553804
Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells.
PMID:26550473
Long noncoding RNA MIR31HG exhibits oncogenic property in pancreatic ductal adenocarcinoma and is negatively regulated by miR-193b.
PMID:26549028
Linking Genes to Cardiovascular Diseases: Gene Action and Gene-Environment Interactions.
PMID:26545598
Long noncoding RNAs in T lymphocytes.
PMID:26538526
Gain of a New Exon by a Lineage-Specific Alu Element-Integration Event in the BCS1L Gene during Primate Evolution.
PMID:26537194
Characteristics of α-Gal epitope, anti-Gal antibody, α1,3 galactosyltransferase and its clinical exploitation (Review).
PMID:26531137
Genes and dental disorders.
PMID:26527946
Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data.
PMID:26525298
Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes.
PMID:26517682
Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data.
PMID:26511205
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors.
PMID:26510915
Genome-wide evolutionary and functional analysis of the Equine Repetitive Element 1: an insertion in the myostatin promoter affects gene expression.
PMID:26503543
Discovery and characterization of Alu repeat sequences via precise local read assembly.
PMID:26503250
Clinical prospects of long noncoding RNAs as novel biomarkers and therapeutic targets in prostate cancer.
PMID:26503110
Deciphering the Developmental Dynamics of the Mouse Liver Transcriptome.
PMID:26496202
Evidence of Extensive Alternative Splicing in Post Mortem Human Brain HTT Transcription by mRNA Sequencing.
PMID:26496077
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.
PMID:26492141
Role of the single deaminase domain APOBEC3A in virus restriction, retrotransposition, DNA damage and cancer.
PMID:26489798
Regulation of PKR by RNA: formation of active and inactive dimers.
PMID:26488609
PCR-Free Enrichment of Mitochondrial DNA from Human Blood and Cell Lines for High Quality Next-Generation DNA Sequencing.
PMID:26488301
Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken.
PMID:26486989
Kuwaiti population subgroup of nomadic Bedouin ancestry-Whole genome sequence and analysis.
PMID:26484159
Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis.
PMID:26484107
Third party annotation gene data set of eutherian lysozyme genes.
PMID:26484105
Cardiac cAMP: production, hydrolysis, modulation and detection.
PMID:26483685
Increased Transcript Complexity in Genes Associated with Chronic Obstructive Pulmonary Disease.
PMID:26480348
Potential impact of gene regulatory mechanisms on the evolution of multicellularity in the volvocine algae.
PMID:26479715
Analytical and Clinical Validation of a Digital Sequencing Panel for Quantitative, Highly Accurate Evaluation of Cell-Free Circulating Tumor DNA.
PMID:26474073
Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens.
PMID:26452545
Current strategies for mutation detection in phenotype-driven screens utilising next generation sequencing.
PMID:26449678
The Fine LINE: Methylation Drawing the Cancer Landscape.
PMID:26448926
Ten Simple Rules for Writing a Reply Paper.
PMID:26448197
Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers.
PMID:26447755
Stacked thin layers of metaphase chromatin explain the geometry of chromosome rearrangements and banding.
PMID:26446309
Progress of cancer genomics.
PMID:26445603
Genetics of Hearing Loss: Syndromic.
PMID:26443487
Genetic variation and the de novo assembly of human genomes.
PMID:26442640
LINE-1 activity as molecular basis for genomic instability associated with light exposure at night.
PMID:26442182
Repetitive elements regulate circular RNA biogenesis.
PMID:26442181
Drawing a fine line on endogenous retroelement activity.
PMID:26442176
Endogenous retrovirus-mediated genomic variations in chimpanzees.
PMID:26442175
An assay to monitor the activity of DNA transposition complexes yields a general quality control measure for transpositional recombination reactions.
PMID:26442171
Assembly and characterization of novel Alu inserts detected from next-generation sequencing data.
PMID:26442170
The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.
PMID:26439490
Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the Krüppel-associated box zinc finger protein family.
PMID:26435754
Alternative Splicing QTLs in European and African Populations.
PMID:26430802
Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms.
PMID:26428853
Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data.
PMID:26423047
Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples.
PMID:26420835
Present and future challenges of induced pluripotent stem cells.
PMID:26416678
Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?
PMID:26404381
Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans.
PMID:26399483
De novo sequencing and assembly analysis of transcriptome in the Sodom apple (Calotropis gigantea).
PMID:26395839
Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies.
PMID:26395405
Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5' splice site strength.
PMID:26392272
A structural approach reveals how neighbouring C2H2 zinc fingers influence DNA binding specificity.
PMID:26384429
The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression.
PMID:26382853
Bioinformatics in Africa: The Rise of Ghana?
PMID:26378921
Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival.
PMID:26378581
The genome of the vervet (Chlorocebus aethiops sabaeus).
PMID:26377836
Donkey genome and insight into the imprinting of fast karyotype evolution.
PMID:26373886
miR-128 represses L1 retrotransposition by binding directly to L1 RNA.
PMID:26367248
Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes.
PMID:26365239
Short interspersed DNA elements and miRNAs: a novel hidden gene regulation layer in zebrafish?
PMID:26363800
The Bottleneck in Genetic Testing.
PMID:26358106
Aberrant reduction of telomere repetitive sequences in plasma cell-free DNA for early breast cancer detection.
PMID:26356673
Can a few non-coding mutations make a human brain?
PMID:26350501
Osteosarcoma Genetics and Epigenetics: Emerging Biology and Candidate Therapies.
PMID:26349415
Genetic Susceptibility to Rhodococcus equi.
PMID:26340305
Villain of Molecular Biology: Why are we not reproducible in research?
PMID:26339478
EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering.
PMID:26335049
LINE-1 in cancer: multifaceted functions and potential clinical implications.
PMID:26334179
Utility of whole-genome sequencing for detection of newborn screening disorders in a population cohort of 1,696 neonates.
PMID:26334177
Improving the Power of Structural Variation Detection by Augmenting the Reference.
PMID:26322511
Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project.
PMID:26319576
Next-generation sequencing: hype and hope for development of personalized radiation therapy?
PMID:26316159
Recent advances in the study of active endogenous retrovirus envelope glycoproteins in the mammalian placenta.
PMID:26311491
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.
PMID:26309733
Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes.
PMID:26300000
Structural and functional liaisons between transposable elements and satellite DNAs.
PMID:26293606
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals.
PMID:26292667
Tandem repeat variation in human and great ape populations and its impact on gene expression divergence.
PMID:26290536
Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance.
PMID:26290182
The genomic landscape of human immune-mediated diseases.
PMID:26290150
Oncoprotein ZNF322A transcriptionally deregulates alpha-adducin, cyclin D1 and p53 to promote tumor growth and metastasis in lung cancer.
PMID:26279304
Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma.
PMID:26279299
Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA.
PMID:26278472
An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.
PMID:26276634
RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself.
PMID:26275108
Generalised Anxiety Disorder--A Twin Study of Genetic Architecture, Genome-Wide Association and Differential Gene Expression.
PMID:26274327
Making the case for chromatin profiling: a new tool to investigate the immune-regulatory landscape.
PMID:26272294
Disease-associated mutation in SRSF2 misregulates splicing by altering RNA-binding affinities.
PMID:26261309
SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation.
PMID:26259533
A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data.
PMID:26258935
Noncoding RNAs, Emerging Regulators of Skeletal Muscle Development and Diseases.
PMID:26258142
Genome-wide profiling of DNA methylation reveals preferred sequences of DNMTs in hepatocellular carcinoma cells.
PMID:26254611
Paradigm shifts in genomics through the FANTOM projects.
PMID:26253466
SNP Formation Bias in the Murine Genome Provides Evidence for Parallel Evolution.
PMID:26253317
Clinical exome sequencing in neurogenetic and neuropsychiatric disorders.
PMID:26250888
GC-Content of Synonymous Codons Profoundly Influences Amino Acid Usage.
PMID:26248983
'Cut from the same cloth': Shared microsatellite variants among cancers link to ectodermal tissues-neural tube and crest cells.
PMID:26246470
A call for benchmarking transposable element annotation methods.
PMID:26244060
Prenatal Programming and Toxicity (PPTOX) Introduction.
PMID:26241073
Use of miRNAs in biofluids as biomarkers in dietary and lifestyle intervention studies.
PMID:26233309
KLF/SP Transcription Factor Family Evolution: Expansion, Diversification, and Innovation in Eukaryotes.
PMID:26232396
Big Data Analytics in Healthcare.
PMID:26229957
Transcription factors, chromatin proteins and the diversification of Hemiptera.
PMID:26226651
A Genome-Wide Landscape of Retrocopies in Primate Genomes.
PMID:26224704
The role of Alu elements in the cis-regulation of RNA processing.
PMID:26223268
Long Non-coding RNA ANRIL and Polycomb in Human Cancers and Cardiovascular Disease.
PMID:26220772
Circadian disruption and breast cancer: an epigenetic link?
PMID:26220712
Genomic medicine in gastroenterology: A new approach or a new specialty?
PMID:26217074
Epigenetic Alterations in Colorectal Cancer: Emerging Biomarkers.
PMID:26216839
Double strand break repair by capture of retrotransposon sequences and reverse-transcribed spliced mRNA sequences in mouse zygotes.
PMID:26216318
An open ecosystem engagement strategy through the lens of global food safety.
PMID:26213614
Glioma Association and Balancing Selection of ZFPM2.
PMID:26207917
Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
PMID:26206263
MI-PVT: A Tool for Visualizing the Chromosome-Centric Human Proteome.
PMID:26204236
Cell therapies and regenerative medicine.
PMID:26202498
Molecular Testing in Myelodysplastic Syndromes for the Practicing Oncologist: Will the Progress Fulfill the Promise?
PMID:26194858
Marsupials and monotremes possess a novel family of MHC class I genes that is lost from the eutherian lineage.
PMID:26194104
Traumatic spinal cord injury in mice with human immune systems.
PMID:26193167
Regulation of protein homeostasis in neurodegenerative diseases: the role of coding and non-coding genes.
PMID:26190021
Utility and limitations of exome sequencing as a genetic diagnostic tool for conditions associated with pediatric sudden cardiac arrest/sudden cardiac death.
PMID:26187847
LINE-1 Retroelements Get ZAPped!
PMID:26182081
Harnessing Pandemonium: The Clinical Implications of Tumor Heterogeneity in Ovarian Cancer.
PMID:26175968
The NIH BD2K center for big data in translational genomics.
PMID:26174866
Defining "mutation" and "polymorphism" in the era of personal genomics.
PMID:26173390
Regulation of human MAPT gene expression.
PMID:26170022
Long non-coding RNAs in innate and adaptive immunity.
PMID:26166759
Biodiversity Meets Neuroscience: From the Sequencing Ship (Ship-Seq) to Deciphering Parallel Evolution of Neural Systems in Omic's Era.
PMID:26163680
Detection of Genomic Structural Variants from Next-Generation Sequencing Data.
PMID:26161383
Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.
PMID:26160651
Long Noncoding RNA in Digestive Tract Cancers: Function, Mechanism, and Potential Biomarker.
PMID:26156325
Read count-based method for high-throughput allelic genotyping of transposable elements and structural variants.
PMID:26153459
Label-free DNA sequencing using Millikan detection.
PMID:26151683
Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules.
PMID:26147120
An improved understanding of cancer genomics through massively parallel sequencing.
PMID:26146607
Revisiting disease genes based on whole-exome sequencing in consanguineous populations.
PMID:26141664
RNA Structures as Mediators of Neurological Diseases and as Drug Targets.
PMID:26139368
DNAseq Workflow in a Diagnostic Context and an Example of a User Friendly Implementation.
PMID:26137478
Hydra as a tractable, long-lived model system for senescence.
PMID:26136619
Somatic Mutations and Clonal Hematopoiesis in Aplastic Anemia.
PMID:26132940
High-throughput RNA sequencing reveals structural differences of orthologous brain-expressed genes between western lowland gorillas and humans.
PMID:26132897
Assembly and diploid architecture of an individual human genome via single-molecule technologies.
PMID:26121404
Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry.
PMID:26120868
The diversification of PHIS transposon superfamily in eukaryotes.
PMID:26120370
Epigenetic signaling in schizophrenia.
PMID:26120009
The Role of Transposable Elements in the Origin and Evolution of MicroRNAs in Human.
PMID:26115450
Causes of genome instability: the effect of low dose chemical exposures in modern society.
PMID:26106144
P Transposable Elements in Drosophila and other Eukaryotic Organisms.
PMID:26104714
The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.
PMID:26104698
Np9, a cellular protein of retroviral ancestry restricted to human, chimpanzee and gorilla, binds and regulates ubiquitin ligase MDM2.
PMID:26103464
Engineered CRISPR-Cas9 nucleases with altered PAM specificities.
PMID:26098369
Connecting the speckles: Splicing kinases and their role in tumorigenesis and treatment response.
PMID:26098145
Associations between genetic variation in one-carbon metabolism and LINE-1 DNA methylation in histologically normal breast tissues.
PMID:26090795
RNA Sequencing for Identification of Differentially Expressed Noncoding Transcripts during Adipogenic Differentiation of Adipose-Derived Stromal Cells.
PMID:26090763
Normalization of Complete Genome Characteristics: Application to Evolution from Primitive Organisms to Homo sapiens.
PMID:26085808
Long noncoding RNAs in development and cancer: potential biomarkers and therapeutic targets.
PMID:26082843
Mx1 and Mx2 key antiviral proteins are surprisingly lost in toothed whales.
PMID:26080416
Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex.
PMID:26076492
Breaking bad: The mutagenic effect of DNA repair.
PMID:26073774
The epigenetics of aging and neurodegeneration.
PMID:26072273
Advances in long noncoding RNAs: identification, structure prediction and function annotation.
PMID:26072035
Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis.
PMID:26070663
Coding Microsatellite Frameshift Mutations Accumulate in Atherosclerotic Carotid Artery Lesions: Evaluation of 26 Cases and Literature Review.
PMID:26070012
Optical Imaging of Paramagnetic Bead-DNA Aggregation Inhibition Allows for Low Copy Number Detection of Infectious Pathogens.
PMID:26068926
Preferential Amplification of Pathogenic Sequences.
PMID:26067233
Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity.
PMID:26061969
Gene therapy for cancer: present status and future perspective.
PMID:26056594
Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells.
PMID:26056301
A general concept for consistent documentation of computational analyses.
PMID:26055099
Differential Epigenetic Effects of Atmospheric Cold Plasma on MCF-7 and MDA-MB-231 Breast Cancer Cells.
PMID:26042423
Emerging applications of read profiles towards the functional annotation of the genome.
PMID:26042150
Cardiovascular genetics: technological advancements and applicability for dilated cardiomyopathy.
PMID:26031632
Molecular epigenetic switches in neurodevelopment in health and disease.
PMID:26029068
Comprehensive identification of genes driven by ERV9-LTRs reveals TNFRSF10B as a re-activatable mediator of testicular cancer cell death.
PMID:26024393
Genome-Wide Search Identifies 1.9 Mb from the Polar Bear Y Chromosome for Evolutionary Analyses.
PMID:26019166
The human transmembrane proteome.
PMID:26018427
A statistical framework to predict functional non-coding regions in the human genome through integrated analysis of annotation data.
PMID:26015273
Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.
PMID:26014613
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
PMID:26006009
De novo assembly of a haplotype-resolved human genome.
PMID:26006006
The cancer cell map initiative: defining the hallmark networks of cancer.
PMID:26000852
High-throughput sequencing technologies.
PMID:26000844
Choosing the Right Tool for the Job: RNAi, TALEN, or CRISPR.
PMID:26000843
The road from next-generation sequencing to personalized medicine.
PMID:26000024
The potential role of Alu Y in the development of resistance to SN38 (Irinotecan) or oxaliplatin in colorectal cancer.
PMID:25997618
Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites.
PMID:25995269
The role of epidermal growth factor-like module containing mucin-like hormone receptor 2 in human cancers.
PMID:25992231
Differential SINE evolution in vesper and non-vesper bats.
PMID:25991928
A low-latency, big database system and browser for storage, querying and visualization of 3D genomic data.
PMID:25990738
Roles of solvent accessibility and gene expression in modeling protein sequence evolution.
PMID:25987828
Cardiac gene expression data and in silico analysis provide novel insights into human and mouse taste receptor gene regulation.
PMID:25986534
A seven-gene CpG-island methylation panel predicts breast cancer progression.
PMID:25986046
LINEs in mice: features, families, and potential roles in early development.
PMID:25975894
Epigenetics and pharmacology.
PMID:25966315
Division of labor between IRF1 and IRF2 in regulating different stages of transcriptional activation in cellular antiviral activities.
PMID:25960866
The hidden side of unstable DNA repeats: Mutagenesis at a distance.
PMID:25956860
Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons.
PMID:25954322
The Zinc-Finger Antiviral Protein ZAP Inhibits LINE and Alu Retrotransposition.
PMID:25951186
Haplotype-resolved genome sequencing: experimental methods and applications.
PMID:25948246
Functional significance of the sex chromosomes during spermatogenesis.
PMID:25948089
The renaissance of developmental biology.
PMID:25946596
Advances in genetics and genomics: use and limitations in achieving malaria elimination goals.
PMID:25943157
Initial description of primate-specific cystine-knot Prometheus genes and differential gene expansions of D-dopachrome tautomerase genes.
PMID:25941635
Obstruction of adaptation in diploids by recessive, strongly deleterious alleles.
PMID:25941393
Genome-wide amplification of proviral sequences reveals new polymorphic HERV-K(HML-2) proviruses in humans and chimpanzees that are absent from genome assemblies.
PMID:25927962
Utility of proteomics in obstetric disorders: a review.
PMID:25926758
Functional classification of 15 million SNPs detected from diverse chicken populations.
PMID:25926514
Alu-mediated diverse and complex pathogenic copy-number variants within human chromosome 17 at p13.3.
PMID:25908615
Identification, Diversity and Evolution of MITEs in the Genomes of Microsporidian Nosema Parasites.
PMID:25898273
Do larger genomes contain more diverse transposable elements?
PMID:25896861
piRNA involvement in genome stability and human cancer.
PMID:25895683
Sustained proliferation in cancer: Mechanisms and novel therapeutic targets.
PMID:25892662
Structural variation mutagenesis of the human genome: Impact on disease and evolution.
PMID:25892534
Laser capture microdissection: Big data from small samples.
PMID:25892148
Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan.
PMID:25887915
Unraveling the 3D genome: genomics tools for multiscale exploration.
PMID:25887733
Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs.
PMID:25887594
Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals.
PMID:25887476
CopywriteR: DNA copy number detection from off-target sequence data.
PMID:25887352
Melatonin: an inhibitor of breast cancer.
PMID:25876649
A simple strategy for reducing false negatives in calling variants from single-cell sequencing data.
PMID:25876174
Evolution of genetic techniques: past, present, and beyond.
PMID:25874212
AID to overcome the limitations of genomic information by introducing somatic DNA alterations.
PMID:25873751
Seeking a roadmap toward neuroepigenetics.
PMID:25856479
Long noncoding RNAs in cardiac development and ageing.
PMID:25855606
New bioinformatic tool for quick identification of functionally relevant endogenous retroviral inserts in human genome.
PMID:25853282
Evidence for Natural Selection in Nucleotide Content Relationships Based on Complete Mitochondrial Genomes: Strong Effect of Guanine Content on Separation between Terrestrial and Aquatic Vertebrates.
PMID:25853054
An epigenetic hypothesis for the genomic memory of pain.
PMID:25852480
A network of RNA and protein interactions in Fronto Temporal Dementia.
PMID:25852467
Biochemical functional predictions for protein structures of unknown or uncertain function.
PMID:25848497
The Human Alzheimer Disease Project: A New Call to Arms.
PMID:25844883
Temporal and spatial rearrangements of a repetitive element array on C57BL/6J mouse genome.
PMID:25839092
The mechanism of ageing: primary role of transposable elements in genome disintegration.
PMID:25837999
Progress and challenges in developing metabolic footprints from diet in human gut microbial cometabolism.
PMID:25833886
Non-coding RNAs and hypertension-unveiling unexpected mechanisms of hypertension by the dark matter of the genome.
PMID:25828869
Whole-exome sequencing and its impact in hereditary hearing loss.
PMID:25825321
Comprehensive data resources and analytical tools for pathological association of aminoacyl tRNA synthetases with cancer.
PMID:25824651
The future of human cerebral cartography: a novel approach.
PMID:25823868
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.
PMID:25823460
Non-coding RNA: a new frontier in regulatory biology.
PMID:25821635
Mobilization of LINE-1 in irradiated mammary gland tissue may potentially contribute to low dose radiation-induced genomic instability.
PMID:25821563
Activation of an endogenous retrovirus-associated long non-coding RNA in human adenocarcinoma.
PMID:25821520
Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana.
PMID:25813042
Impacts of a biobank: Bridging the gap in translational cancer medicine.
PMID:25810570
Long Non-Coding RNA Expression during Aging in the Human Subependymal Zone.
PMID:25806019
Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs.
PMID:25798919
LINE-1 induces hTERT and ensures telomere maintenance in tumour cell lines.
PMID:25798839
Personal genomes, quantitative dynamic omics and personalized medicine.
PMID:25798291
Inter-locus as well as intra-locus heterogeneity in LINE-1 promoter methylation in common human cancers suggests selective demethylation pressure at specific CpGs.
PMID:25798207
DNA methylation dynamics in muscle development and disease.
PMID:25798107
Long noncoding RNA lincRNA-p21 is the major mediator of UVB-induced and p53-dependent apoptosis in keratinocytes.
PMID:25789975
Foamy viral vector integration sites in SCID-repopulating cells after MGMTP140K-mediated in vivo selection.
PMID:25786870
Human endogenous retrovirus group E and its involvement in diseases.
PMID:25785516
Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes.
PMID:25785303
Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds.
PMID:25781995
The Role of Regulatory Agencies and Intellectual Property: Part I.
PMID:25775921
Altering Genomic Integrity: Heavy Metal Exposure Promotes Transposable Element-Mediated Damage.
PMID:25774044
Prognostic significance of promoter CpG island hypermethylation and repetitive DNA hypomethylation in stage I lung adenocarcinoma.
PMID:25772390
Cancer metabolism: strategic diversion from targeting cancer drivers to targeting cancer suppliers.
PMID:25767677
Evolutionary patterns of DNA base composition and correlation to polymorphisms in DNA repair systems.
PMID:25765652
Sequence and analysis of a whole genome from Kuwaiti population subgroup of Persian ancestry.
PMID:25765185
U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals.
PMID:25761766
The contribution of alu elements to mutagenic DNA double-strand break repair.
PMID:25761216
Evaluating historical candidate genes for schizophrenia.
PMID:25754081
Landscape of insertion polymorphisms in the human genome.
PMID:25745018
On bioinformatic resources.
PMID:25743088
Whole genome analysis of a Vietnamese trio.
PMID:25740146
SVA retrotransposition in exon 6 of the coagulation factor IX gene causing severe hemophilia B.
PMID:25739383
Epigenetic Mechanisms of Serotonin Signaling.
PMID:25734378
Transcriptional activity of human endogenous retroviruses in human peripheral blood mononuclear cells.
PMID:25734056
Toward a magic or imaginary bullet? Ligands for drug targeting to cancer cells: principles, hopes, and challenges.
PMID:25733832
The effects of chromatin organization on variation in mutation rates in the genome.
PMID:25732611
Mismatch repair during homologous and homeologous recombination.
PMID:25731766
Type I interferon controls propagation of long interspersed element-1.
PMID:25716322
terMITEs: miniature inverted-repeat transposable elements (MITEs) in the termite genome (Blattodea: Termitoidae).
PMID:25711308
Genetic changes shaping the human brain.
PMID:25710529
Computational prediction of molecular pathogen-host interactions based on dual transcriptome data.
PMID:25705211
Genome architecture and its roles in human copy number variation.
PMID:25705150
Genetics of Vascular Dementia.
PMID:25705074
Pseudogene-derived lncRNAs: emerging regulators of gene expression.
PMID:25699073
The genetic regulation of infant immune responses to vaccination.
PMID:25699041
Methods in molecular cardiology: in silico cloning.
PMID:25696371
Methods in molecular cardiology: microarray technology.
PMID:25696214
Methods in molecular cardiology: DNA sequencing.
PMID:25696079
The effect of life history on retroviral genome invasions.
PMID:25692467
C2H2 zinc finger proteins greatly expand the human regulatory lexicon.
PMID:25690854
Personalization of the immunosuppressive treatment in renal transplant recipients: the great challenge in "omics" medicine.
PMID:25690039
The Genome 10K Project: a way forward.
PMID:25689317
Biomarkers in Patients with Metastatic Breast Cancer and the PRAEGNANT Study Network.
PMID:25684786
Identification of the specific interactors of the human lariat RNA debranching enzyme 1 protein.
PMID:25671812
Embryonic stem cell specific "master" replication origins at the heart of the loss of pluripotency.
PMID:25658386
Dispersal of an ancient retroposon in the TP53 promoter of Bovidae: phylogeny, novel mechanisms, and potential implications for cow milk persistency.
PMID:25653076
Utilising the resources of the International Knockout Mouse Consortium: the Australian experience.
PMID:25645994
A copy number variation map of the human genome.
PMID:25645873
The aging clock and circadian control of metabolism and genome stability.
PMID:25642238
The decline of human endogenous retroviruses: extinction and survival.
PMID:25640971
Pure interstitial dup(6)(q22.31q22.31) - a case report.
PMID:25637059
Exogenous enzymes upgrade transgenesis and genetic engineering of farm animals.
PMID:25636347
The role of DNA insertions in phenotypic differentiation between humans and other primates.
PMID:25635043
Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil.
PMID:25633377
First insight into divergence, representation and chromosome distribution of reverse transcriptase fragments from L1 retrotransposons in peanut and wild relative species.
PMID:25633099
Next-generation sequencing for the diagnosis of cardiac arrhythmia syndromes.
PMID:25625719
Post-transcriptional regulation of long noncoding RNAs in cancer.
PMID:25618601
Diagnosis of an imprinted-gene syndrome by a novel bioinformatics analysis of whole-genome sequences from a family trio.
PMID:25614875
Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.
PMID:25613453
The expanding role of epigenetics.
PMID:25610838
Methylation status of long interspersed element-1 in advanced gastric cancer and its prognostic implication.
PMID:25609453
New concepts in breast cancer genomics and genetics.
PMID:25606588
Repeated horizontal transfers of four DNA transposons in invertebrates and bats.
PMID:25606061
Development of a monoclonal antibody specific to the endonuclease domain of the human LINE-1 ORF2 protein.
PMID:25606060
Intragenomic distribution of RTE retroelements suggests intrachromosomal movement.
PMID:25605325
A droplet digital PCR detection method for rare L1 insertions in tumors.
PMID:25598847
Jumping on the Train of Personalized Medicine: A Primer for Non- Geneticist Clinicians: Part 3. Clinical Applications in the Personalized Medicine Area.
PMID:25598768
The cytoplasmic tail of retroviral envelope glycoproteins.
PMID:25595807
Relationship between nucleosome positioning and progesterone-induced alternative splicing in breast cancer cells.
PMID:25589247
Computational cancer biology: education is a natural key to many locks.
PMID:25588624
Identification of the oncogenic kinase TOPK/PBK as a master mitotic regulator of C2H2 zinc finger proteins.
PMID:25575812
Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions.
PMID:25572935
The expanding epigenetic landscape of non-model organisms.
PMID:25568458
Diversity and impact of rare variants in genes encoding the platelet G protein-coupled receptors.
PMID:25567036
Self-reported race/ethnicity in the age of genomic research: its potential impact on understanding health disparities.
PMID:25563503
Why and how might genetic and phylogenetic diversity be reflected in the identification of key biodiversity areas?
PMID:25561678
Identification and computational analysis of gene regulatory elements.
PMID:25561628
Basic concepts and potential applications of genetics and genomics for cardiovascular and stroke clinicians: a scientific statement from the American Heart Association.
PMID:25561044
Long non-coding RNAs as regulators of the endocrine system.
PMID:25560704
RNA-binding proteins in pluripotency, differentiation, and reprogramming.
PMID:25554730
Epigenetic effects of low perinatal doses of flame retardant BDE-47 on mitochondrial and nuclear genes in rat offspring.
PMID:25533936
Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates.
PMID:25527834
Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes.
PMID:25523484
Inhibition of autoimmune Chagas-like heart disease by bone marrow transplantation.
PMID:25521296
DNA polymerases in biotechnology.
PMID:25520711
Genome-wide analysis of alternative splicing in Volvox carteri.
PMID:25516378
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.
PMID:25504731
Comparative genomics reveals insights into avian genome evolution and adaptation.
PMID:25504712
Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes.
PMID:25503085
Early mesozoic coexistence of amniotes and hepadnaviridae.
PMID:25501991
Focusing on long noncoding RNA dysregulation in gastric cancer.
PMID:25501508
Splicing of designer exons informs a biophysical model for exon definition.
PMID:25492963
Gene expression profiling of replicative and induced senescence.
PMID:25483067
Regulatory roles of LINE-1-encoded reverse transcriptase in cancer onset and progression.
PMID:25478632
JTD special edition 'Hot Topics in COPD'-The microbiome in COPD.
PMID:25478194
Extensive error in the number of genes inferred from draft genome assemblies.
PMID:25474019
Construction and characterization of three wheat bacterial artificial chromosome libraries.
PMID:25464379
Genetics of allergic diseases.
PMID:25459575
Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins.
PMID:25436857
Genes regulating lipid and protein metabolism are highly expressed in mammary gland of lactating dairy goats.
PMID:25433708
Guanine quadruplexes are formed by specific regions of human transposable elements.
PMID:25431265
Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes.
PMID:25431149
A pathophysiological view of the long non-coding RNA world.
PMID:25428918
Autoimmune thyroid disease and rheumatoid arthritis: relationship and the role of genetics.
PMID:25427993
A case study in connectomics: the history, mapping, and connectivity of the claustrum.
PMID:25426062
Advances in genome editing technology and its promising application in evolutionary and ecological studies.
PMID:25414792
Host control of insect endogenous retroviruses: small RNA silencing and immune response.
PMID:25412365
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.
PMID:25411453
Expression of human skin-specific genes defined by transcriptomics and antibody-based profiling.
PMID:25411189
Roles of intragenic and intergenic L1s in mouse and human.
PMID:25409429
Using mouse models to study function of transcriptional factors in T cell development.
PMID:25408871
De-repressing LncRNA-Targeted Genes to Upregulate Gene Expression: Focus on Small Molecule Therapeutics.
PMID:25405465
Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites.
PMID:25405079
Protein engineering of Cas9 for enhanced function.
PMID:25398355
Intronic variants in the NFKB1 gene may influence hearing forecast in patients with unilateral sensorineural hearing loss in Meniere's disease.
PMID:25397881
Clinical Management of Pediatric Genomic Testing.
PMID:25396100
Gene-Lifestyle Interactions in Complex Diseases: Design and Description of the GLACIER and VIKING Studies.
PMID:25396097
Stress and the dynamic genome: Steroids, epigenetics, and the transposome.
PMID:25385609
Resolving the complexity of the human genome using single-molecule sequencing.
PMID:25383537
Identification of candidate long noncoding RNAs associated with left ventricular hypertrophy.
PMID:25382655
Particles and microfluidics merged: perspectives of highly sensitive diagnostic detection.
PMID:25378716
Epidaurus: aggregation and integration analysis of prostate cancer epigenome.
PMID:25378314
DEEP: a general computational framework for predicting enhancers.
PMID:25378307
Multispecies coalescent analysis of the early diversification of neotropical primates: phylogenetic inference under strong gene trees/species tree conflict.
PMID:25377940
Conserved sequence-specific lincRNA-steroid receptor interactions drive transcriptional repression and direct cell fate.
PMID:25377354
A comparative study and a phylogenetic exploration of the compositional architectures of mammalian nuclear genomes.
PMID:25375262
A novel Alu-based real-time PCR method for the quantitative detection of plasma circulating cell-free DNA: sensitivity and specificity for the diagnosis of myocardial infarction.
PMID:25374065
Case-only exome sequencing and complex disease susceptibility gene discovery: study design considerations.
PMID:25371537
Three-Dimensional Algebraic Models of the tRNA Code and 12 Graphs for Representing the Amino Acids.
PMID:25370377
Reconceptualizing major depressive disorder as an infectious disease.
PMID:25364500
AN EFFICIENT ALGORITHM FOR CHINESE POSTMAN WALK ON BI-DIRECTED DE BRUIJN GRAPHS.
PMID:25364472
Human cardiac systems electrophysiology and arrhythmogenesis: iteration of experiment and computation.
PMID:25362174
Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data.
PMID:25354084
Investigating genomic structure using changept: A Bayesian segmentation model.
PMID:25349679
Mobster: accurate detection of mobile element insertions in next generation sequencing data.
PMID:25348035
Control of mammalian retrotransposons by cellular RNA processing activities.
PMID:25346866
iDoComp: a compression scheme for assembled genomes.
PMID:25344501
Ovarian cancer biomarker discovery based on genomic approaches.
PMID:25337559
The evolution of comparative genomics.
PMID:25333060
A pilot study of angiotensin converting enzyme (ACE) genotype and return of spontaneous circulation following out-of-hospital cardiac arrest.
PMID:25332829
Hydrophobicity and aromaticity are primary factors shaping variation in amino acid usage of chicken proteome.
PMID:25329059
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.
PMID:25327137
Widespread contribution of transposable elements to the innovation of gene regulatory networks.
PMID:25319995
The impact of transposable elements in genome evolution and genetic instability and their implications in various diseases.
PMID:25317108
Deep sequencing reveals low incidence of endogenous LINE-1 retrotransposition in human induced pluripotent stem cells.
PMID:25289675
An evaluation of regulatory and commercial barriers to stratified medicine development and adoption.
PMID:25287070
Multiple Mechanisms Contribute To Telomere Maintenance.
PMID:25285314
Genetic networks governing heart development.
PMID:25280899
Retrotransposon-based profiling of mammalian epigenomes: DNA methylation of IAP LTRs in embryonic stem, somatic and cancer cells.
PMID:25277721
LINE-1 hypomethylation in blood and tissue samples as an epigenetic marker for cancer risk: a systematic review and meta-analysis.
PMID:25275447
Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes.
PMID:25275320
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
PMID:25274305
Proliferation of endogenous retroviruses in the early stages of a host germ line invasion.
PMID:25261407
Hybrid and rogue kinases encoded in the genomes of model eukaryotes.
PMID:25255313
Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives.
PMID:25254202
Comprehensive analysis of mutually exclusive alternative splicing in C. elegans.
PMID:25254147
ARYANA: Aligning Reads by Yet Another Approach.
PMID:25252881
A comprehensive transcriptomic analysis of infant and adult mouse ovary.
PMID:25251848
Analysis of the role of homology arms in gene-targeting vectors in human cells.
PMID:25250686
Genome-wide and single-cell analyses reveal a context dependent relationship between CBP recruitment and gene expression.
PMID:25249627
SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age.
PMID:25247314
Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination.
PMID:25246103
The scaffold protein Nde1 safeguards the brain genome during S phase of early neural progenitor differentiation.
PMID:25245017
Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies.
PMID:25239376
Function and dynamics of macromolecular complexes explored by integrative structural and computational biology.
PMID:25238653
Molecular characterization of common fragile sites as a strategy to discover cancer susceptibility genes.
PMID:25231336
Rolling-circle transposons catalyze genomic innovation in a mammalian lineage.
PMID:25223768
Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms.
PMID:25222008
Human serotonin receptor 5-HT(1A) preferentially segregates to the liquid disordered phase in synthetic lipid bilayers.
PMID:25211019
Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency.
PMID:25211013
We are all individuals... bioinformatics in the personalized medicine era.
PMID:25204962
Direct binding of the Alu binding protein dimer SRP9/14 to 40S ribosomal subunits promotes stress granule formation and is regulated by Alu RNA.
PMID:25200073
The evolution of tyrosine-recombinase elements in Nematoda.
PMID:25197791
Evidence for the persistence of an active endogenous retrovirus (ERVE) in humans.
PMID:25192754
Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies.
PMID:25192061
Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.
PMID:25188499
Recruitment of Yoruba families from Nigeria for genetic research: experience from a multisite keloid study.
PMID:25182071
Prenatal maternal immune activation causes epigenetic differences in adolescent mouse brain.
PMID:25180573
Open access data sharing in genomic research.
PMID:25178093
Microsatellite-centromere mapping in common carp through half-tetrad analysis in diploid meiogynogenetic families.
PMID:25171918
The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.
PMID:25171416
Genomic Variation: Lessons Learned from Whole-Genome CNV Analysis.
PMID:25152847
LINEs and SINEs of primate evolution.
PMID:25147443
Potential for genomic instability associated with retrotranspositionally-incompetent L1 loci.
PMID:25143528
Relating gene expression evolution with CpG content changes.
PMID:25142157
The lncRNA-MYC regulatory network in cancer.
PMID:25139102
Epidemiological studies of esophageal cancer in the era of genome-wide association studies.
PMID:25133033
Current status of predictive biomarkers for neoadjuvant therapy in esophageal cancer.
PMID:25133032
Environmental alterations of epigenetics prior to the birth.
PMID:25131541
Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing.
PMID:25129063
Decreased LINE-1 methylation levels in aldosterone-producing adenoma.
PMID:25120789
Transcriptome analysis of red swamp crawfish Procambarus clarkii reveals genes involved in gonadal development.
PMID:25118947
A comprehensive reference transcriptome resource for the common house spider Parasteatoda tepidariorum.
PMID:25118601
A long non-coding RNA is required for targeting centromeric protein A to the human centromere.
PMID:25117489
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma.
PMID:25114248
In silico modeling of human α2C-adrenoreceptor interaction with filamin-2.
PMID:25110951
TGF- β: an important mediator of allergic disease and a molecule with dual activity in cancer development.
PMID:25110717
Current technologies to identify protein kinase substrates in high throughput.
PMID:25110472
Discovery of modulators of HIV-1 infection from the human peptidome.
PMID:25110191
LINE-1 retrotransposons: from 'parasite' sequences to functional elements.
PMID:25106509
Environmental bacteriophages: viruses of microbes in aquatic ecosystems.
PMID:25104950
Histidine kinases mediate differentiation, stress response, and pathogenicity in Magnaporthe oryzae.
PMID:25103193
Drafts of the human proteome.
PMID:25101745
The structure and retrotransposition mechanism of LTR-retrotransposons in the asexual yeast Candida albicans.
PMID:25101670
Validation of high throughput sequencing and microbial forensics applications.
PMID:25101166
Generation of physical map contig-specific sequences.
PMID:25101119
Improved sensitivity to detect recombination using qPCR for Dyskeratosis Congenita PGD.
PMID:25099625
Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential.
PMID:25097266
A high resolution map of mammalian X chromosome fragile regions assessed by large-scale comparative genomics.
PMID:25086724
LIA4 encodes a chromoshadow domain protein required for genomewide DNA rearrangements in Tetrahymena thermophila.
PMID:25084866
Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes.
PMID:25082706
The DNA methylation landscape of human early embryos.
PMID:25079557
Mammalian piRNAs: Biogenesis, function, and mysteries.
PMID:25077039
The quality of methods reporting in parasitology experiments.
PMID:25076044
Periodontal microbiology--the lid's off the box again.
PMID:25074493
Insulin as a Bridge between Type 2 Diabetes and Alzheimer Disease - How Anti-Diabetics Could be a Solution for Dementia.
PMID:25071725
The dynamic exome: acquired variants as individuals age.
PMID:25063753
Microarray analysis reveals global modulation of endogenous retroelement transcription by microbes.
PMID:25063042
Expression and detection of LINE-1 ORF-encoded proteins.
PMID:25054082
Survey on knowledge, attitudes, and training needs of Italian residents on genetic tests for hereditary breast and colorectal cancer.
PMID:25050348
Heteromerization of GPR55 and cannabinoid CB2 receptors modulates signalling.
PMID:25048571
Genomic data integration for ecological and evolutionary traits in non-model organisms.
PMID:25047861
Functional repeat-derived RNAs often originate from retrotransposon-propagated ncRNAs.
PMID:25045147
Transcriptome analysis reveals a dynamic and differential transcriptional response to sulforaphane in normal and prostate cancer cells and suggests a role for Sp1 in chemoprevention.
PMID:25044704
Noncoding RNAs and the borders of heterochromatin.
PMID:25044367
De novo LINE-1 retrotransposition in HepG2 cells preferentially targets gene poor regions of chromosome 13.
PMID:25043885
Unraveling recombination rate evolution using ancestral recombination maps.
PMID:25043668
Parallel universes of Black Six biology.
PMID:25038798
The common marmoset genome provides insight into primate biology and evolution.
PMID:25038751
Larger mammalian body size leads to lower retroviral activity.
PMID:25033295
Effective automated feature construction and selection for classification of biological sequences.
PMID:25033270
Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes.
PMID:25033203
Data integration in the era of omics: current and future challenges.
PMID:25032990
G-protein βγ subunit dimers modulate kidney repair after ischemia-reperfusion injury in rats.
PMID:25028481
Novel diet-related mouse model of colon cancer parallels human colon cancer.
PMID:25024814
Cutting edge: An antibody recognizing ancestral endogenous virus glycoproteins mediates antibody-dependent cellular cytotoxicity on HIV-1-infected cells.
PMID:25024383
Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression.
PMID:25018785
Conventional and genetic talent identification in sports: will recent developments trace talent?
PMID:25015477
Transcriptional landscape of repetitive elements in normal and cancer human cells.
PMID:25012247
Fine mapping and functional studies of risk variants for type 1 diabetes at chromosome 16p13.13.
PMID:25008175
Emerging role of long non-coding RNA SOX2OT in SOX2 regulation in breast cancer.
PMID:25006803
Mobile DNA elements in the generation of diversity and complexity in the brain.
PMID:25005482
High-throughput targeted repeat element bisulfite sequencing (HT-TREBS): genome-wide DNA methylation analysis of IAP LTR retrotransposon.
PMID:25003790
Expanding the computational toolbox for mining cancer genomes.
PMID:25001846
A cross-sectional study of global DNA methylation and risk of colorectal adenoma.
PMID:24998982
Exome sequencing from nanogram amounts of starting DNA: comparing three approaches.
PMID:24992588
Bioinformatics education--perspectives and challenges out of Africa.
PMID:24990350
Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps.
PMID:24989859
Coherent somatic mutation in autoimmune disease.
PMID:24988487
Human endogenous retrovirus-K(II) envelope induction protects neurons during HIV/AIDS.
PMID:24988390
Chimpanzee-specific endogenous retrovirus generates genomic variations in the chimpanzee genome.
PMID:24987855
eMERGEing progress in genomics-the first seven years.
PMID:24987407
Similarities and differences between exome sequences found in a variety of tissues from the same individual.
PMID:24984015
Tandem repeats and G-rich sequences are enriched at human CNV breakpoints.
PMID:24983241
Systems biology in the context of big data and networks.
PMID:24982882
Prenatal exposure to mixtures of xenoestrogens and repetitive element DNA methylation changes in human placenta.
PMID:24980756
DNA methylation, microRNAs, and their crosstalk as potential biomarkers in hepatocellular carcinoma.
PMID:24976726
Insertional hypermutation in mineral oil-induced plasmacytomas.
PMID:24975032
Whole-genome sequence variation, population structure and demographic history of the Dutch population.
PMID:24974849
Population distribution analyses reveal a hierarchy of molecular players underlying parallel endocytic pathways.
PMID:24971745
Alu and LINE-1 hypomethylation is associated with HER2 enriched subtype of breast cancer.
PMID:24971511
Panning for Long Noncoding RNAs.
PMID:24970166
Comparative studies of vertebrate Beta integrin genes and proteins: ancient genes in vertebrate evolution.
PMID:24970121
Reviving the dead: history and reactivation of an extinct l1.
PMID:24968166
A de novo genome assembly algorithm for repeats and nonrepeats.
PMID:24967398
Spy: a new group of eukaryotic DNA transposons without target site duplications.
PMID:24966181
The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.
PMID:24965500
Returning individual research results for genome sequences of pancreatic cancer.
PMID:24963353
Epigenetic heredity of human height.
PMID:24963031
BLAT-based comparative analysis for transposable elements: BLATCAT.
PMID:24959585
The Role of the Transmembrane RING Finger Proteins in Cellular and Organelle Function.
PMID:24957874
Mobile elements and viral integrations prompt considerations for bacterial DNA integration as a novel carcinogen.
PMID:24956175
Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana.
PMID:24954583
Applications of RNA interference high-throughput screening technology in cancer biology and virology.
PMID:24952721
Biochemical and bioinformatic methods for elucidating the role of RNA-protein interactions in posttranscriptional regulation.
PMID:24951655
Epigenetic regulation of persistent pain.
PMID:24948399
Nicotine and oxidative stress induced exomic variations are concordant and overrepresented in cancer-associated genes.
PMID:24947164
The strength of the strongest ties in collaborative problem solving.
PMID:24946798
Digital genotyping of macrosatellites and multicopy genes reveals novel biological functions associated with copy number variation of large tandem repeats.
PMID:24945355
PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator.
PMID:24939934
Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.
PMID:24939910
Obstacles and opportunities for the future of genomic medicine.
PMID:24936509
Overexpression of piRNA pathway genes in epithelial ovarian cancer.
PMID:24932571
Sequencing your genome: what does it mean?
PMID:24932355
No effect of weight loss on LINE-1 methylation levels in peripheral blood leukocytes from postmenopausal overweight women.
PMID:24930817
Effective suppression of dengue virus using a novel group-I intron that induces apoptotic cell death upon infection through conditional expression of the Bax C-terminal domain.
PMID:24927852
Whole genome wide expression profiles on germination of Verticillium dahliae microsclerotia.
PMID:24927478
LINE-1 hypomethylation is associated with the risk of coronary heart disease in Chinese population.
PMID:24918913
Identification of candidate long non-coding RNAs in response to myocardial infarction.
PMID:24917243
Structured RNAs and synteny regions in the pig genome.
PMID:24917120
Discovering functional DNA elements using population genomic information: a proof of concept using human mtDNA.
PMID:24916662
Regulation of L1 expression and retrotransposition by melatonin and its receptor: implications for cancer risk associated with light exposure at night.
PMID:24914052
The mechanistic role of DNA methylation in myeloid leukemogenesis.
PMID:24913729
Transposable elements in cancer as a by-product of stress-induced evolvability.
PMID:24910642
Last-gen nostalgia: a lighthearted rant and reflection on genome sequencing culture.
PMID:24904646
Using semantic web technologies to annotate and align microarray designs.
PMID:24904201
A bioinformatic and computational study of myosin phosphatase subunit diversity.
PMID:24898838
Genome at juncture of early human migration: a systematic analysis of two whole genomes and thirteen exomes from Kuwaiti population subgroup of inferred Saudi Arabian tribe ancestry.
PMID:24896259
Exome sequencing: new insights into lipoprotein disorders.
PMID:24893940
Protein-protein interactions and genetic diseases: The interactome.
PMID:24892209
Human endogenous retrovirus K and cancer: Innocent bystander or tumorigenic accomplice?
PMID:24890612
Simple sequence repeats in the national longitudinal study of adolescent health: an ethnically diverse resource for genetic analysis of health and behavior.
PMID:24890516
Origin of spliceosomal introns and alternative splicing.
PMID:24890509
Interpreting human genetic variation with in vivo zebrafish assays.
PMID:24887202
Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.
PMID:24885064
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity.
PMID:24884953
XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons.
PMID:24884593
Population genetic analysis of bi-allelic structural variants from low-coverage sequence data with an expectation-maximization algorithm.
PMID:24884587
Physiology of the read-write genome.
PMID:24882816
Heterochromatin controls γH2A localization in Neurospora crassa.
PMID:24879124
Prediction of bacterial microRNAs and possible targets in human cell transcriptome.
PMID:24871974
Human genetic variation and Parkinson's disease.
PMID:24868370
microRNAs and Alu elements in the p53-Mdm2-Mdm4 regulatory network.
PMID:24868102
Pharmacogenomics: Current State-of-the-Art.
PMID:24865298
Elevated HERV-K mRNA expression in PBMC is associated with a prostate cancer diagnosis particularly in older men and smokers.
PMID:24858205
HeteroGenome: database of genome periodicity.
PMID:24857969
An enhancer polymorphism at the cardiomyocyte intercalated disc protein NOS1AP locus is a major regulator of the QT interval.
PMID:24857694
Targeting polycomb to pericentric heterochromatin in embryonic stem cells reveals a role for H2AK119u1 in PRC2 recruitment.
PMID:24857660
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs.
PMID:24850885
Rapid evolution of piRNA pathway in the teleost fish: implication for an adaptation to transposon diversity.
PMID:24846630
APOBEC3A deaminates transiently exposed single-strand DNA during LINE-1 retrotransposition.
PMID:24843014
Repetitive genomic elements and overall DNA methylation changes in acute myeloid and childhood B-cell lymphoblastic leukemia patients.
PMID:24841671
The birth and development of the DNA theory of inheritance: sixty years since the discovery of the structure of DNA.
PMID:24840850
Blood from 'junk': the LTR chimeric transcript Pu.2 promotes erythropoiesis.
PMID:24839466
CtIP maintains stability at common fragile sites and inverted repeats by end resection-independent endonuclease activity.
PMID:24837675
Understanding the Dynamics of Gene Regulatory Systems; Characterisation and Clinical Relevance of cis-Regulatory Polymorphisms.
PMID:24832652
Genotyping-by-Sequencing in Plants.
PMID:24832503
Analysis of horse genomes provides insight into the diversification and adaptive evolution of karyotype.
PMID:24828444
Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.
PMID:24823667
Global and local competition between exogenously introduced microRNAs and endogenously expressed microRNAs.
PMID:24823356
Identification of Horizontally-transferred Genomic Islands and Genome Segmentation Points by Using the GC Profile Method.
PMID:24822029
A Brief Review: The Z-curve Theory and its Application in Genome Analysis.
PMID:24822026
Changes in Membrane Cholesterol Differentially Influence Preferential and Non-preferential Signaling of the M1 and M3 Muscarinic Acetylcholine Receptors.
PMID:24821386
Genomic landscape of human, bat, and ex vivo DNA transposon integrations.
PMID:24809961
Evaluation of novel design strategies for developing zinc finger nucleases tools for treating human diseases.
PMID:24808958
Development of rapidly evolving intron markers to estimate multilocus species trees of rodents.
PMID:24804779
Realistic artificial DNA sequences as negative controls for computational genomics.
PMID:24803667
Integrating omics technologies to study pulmonary physiology and pathology at the systems level.
PMID:24802001
Variants of a Thermus aquaticus DNA polymerase with increased selectivity for applications in allele- and methylation-specific amplification.
PMID:24800860
From Phenotype to Genotype: Enter Genomics and Transformation of Primary Health Care around the World.
PMID:24799423
Molecular tumor board: the University of California-San Diego Moores Cancer Center experience.
PMID:24797821
Epigenetic control of mobile DNA as an interface between experience and genome change.
PMID:24795749
Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.
PMID:24792918
Conserved modular domains team up to latch-open active protein kinase Cα.
PMID:24790081
Long noncoding RNA: significance and potential in skin biology.
PMID:24789873
To be or not to be: the regulation of mRNA fate as a survival strategy during mammalian hibernation.
PMID:24789358
Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics.
PMID:24785449
Developmental transcriptome analysis of human erythropoiesis.
PMID:24781209
Genetic interactions affecting human gene expression identified by variance association mapping.
PMID:24771767
Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability.
PMID:24767258
The new world of RNAs.
PMID:24764762
Using VAAST to Identify Disease-Associated Variants in Next-Generation Sequencing Data.
PMID:24763993
Global hypomethylation and promoter methylation in small intestinal neuroendocrine tumors: an in vivo and in vitro study.
PMID:24762809
Microfluidic bead suspension hopper.
PMID:24761972
Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.
PMID:24760698
Protein-centric N-glycoproteomics analysis of membrane and plasma membrane proteins.
PMID:24754784
Defining functional DNA elements in the human genome.
PMID:24753594
A novel tRNA variable number tandem repeat at human chromosome 1q23.3 is implicated as a boundary element based on conservation of a CTCF motif in mouse.
PMID:24753417
An expanding universe of the non-coding genome in cancer biology.
PMID:24747961
The enemy within: endogenous retroelements and autoimmune disease.
PMID:24747712
Towards a molecular systems model of coronary artery disease.
PMID:24743898
Transcription-associated R-loop formation across the human FMR1 CGG-repeat region.
PMID:24743386
Revitalizing personalized medicine: respecting biomolecular complexities beyond gene expression.
PMID:24739991
DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos.
PMID:24736841
Long-read sequencing of chicken transcripts and identification of new transcript isoforms.
PMID:24736250
Species-specific alternative splicing leads to unique expression of sno-lncRNAs.
PMID:24734784
Matrix and backstage: cellular substrates for viral vaccines.
PMID:24732259
Germline variation in cancer-susceptibility genes in a healthy, ancestrally diverse cohort: implications for individual genome sequencing.
PMID:24728327
A quick guide to genomics and bioinformatics training for clinical and public audiences.
PMID:24722068
A short guide to long non-coding RNA gene nomenclature.
PMID:24716852
Genetics of polycystic ovary syndrome.
PMID:24715512
Chromatin Organization by Repetitive Elements (CORE): A Genomic Principle for the Higher-Order Structure of Chromosomes.
PMID:24710208
A reverse transcriptase-dependent mechanism is essential for murine preimplantation development.
PMID:24710196
Next generation DNA sequencing and the future of genomic medicine.
PMID:24710010
Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter.
PMID:24709859
Retrotransposition in tumors and brains.
PMID:24708615
Identifying regulatory mechanisms underlying tumorigenesis using locus expression signature analysis.
PMID:24706889
Illuminating the Transcriptome through the Genome.
PMID:24705295
Association claims in the sequencing era.
PMID:24705293
Genetics of Charcot-Marie-Tooth (CMT) Disease within the Frame of the Human Genome Project Success.
PMID:24705285
In Vivo RNAi-Based Screens: Studies in Model Organisms.
PMID:24705267
High SINE RNA Expression Correlates with Post-Transcriptional Downregulation of BRCA1.
PMID:24705161
Identifying and characterizing regulatory sequences in the human genome with chromatin accessibility assays.
PMID:24705081
A model of evolution of development based on germline penetration of new "no-junk" DNA.
PMID:24704981
Microsatellites with macro-influence in ewing sarcoma.
PMID:24704979
Transposable elements: from DNA parasites to architects of metazoan evolution.
PMID:24704977
Deep sequencing to identify the causes of viral encephalitis.
PMID:24699691
Mapping the structure and dynamics of genomics-related MeSH terms complex networks.
PMID:24699262
A LINE-1 insertion in DLX6 is responsible for cleft palate and mandibular abnormalities in a canine model of Pierre Robin sequence.
PMID:24699068
A brief history of macromolecular crystallography, illustrated by a family tree and its Nobel fruits.
PMID:24698025
Characteristics of the cation cotransporter NKCC1 in human brain: alternate transcripts, expression in development, and potential relationships to brain function and schizophrenia.
PMID:24695712
Transcriptional regulation of YWHAZ, the gene encoding 14-3-3ζ.
PMID:24690670
Implications of human genome structural heterogeneity: functionally related genes tend to reside in organizationally similar genomic regions.
PMID:24684786
Construction of a high-coverage bacterial artificial chromosome library and comprehensive genetic linkage map of yellowtail Seriola quinqueradiata.
PMID:24684753
Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity.
PMID:24682283
Genetic counselors' views and experiences with the clinical integration of genome sequencing.
PMID:24671342
Personalized ophthalmology.
PMID:24665880
Association studies of sporadic Parkinson's disease in the genomic era.
PMID:24653658
A first generation BAC-based physical map of the half-smooth tongue sole (Cynoglossus semilaevis) genome.
PMID:24650389
An efficient method for high-fidelity messenger RNA amplification from a small amount of total RNA.
PMID:24648903
HIV-1 interacts with human endogenous retrovirus K (HML-2) envelopes derived from human primary lymphocytes.
PMID:24648457
Technology: The $1,000 genome.
PMID:24646979
Intellectual property rights and innovation: Evidence from the human genome.
PMID:24639594
Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses.
PMID:24639520
Nuclear function of Alus.
PMID:24637839
RepARK--de novo creation of repeat libraries from whole-genome NGS reads.
PMID:24634442
Missing links in cardiology: long non-coding RNAs enter the arena.
PMID:24619481
Genome-wide signals of positive selection in human evolution.
PMID:24619126
Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development.
PMID:24618421
Multiple conserved regulatory domains promote Fezf2 expression in the developing cerebral cortex.
PMID:24618363
Accommodating the load: The transposable element content of very large genomes.
PMID:24616835
Diversity through duplication: whole-genome sequencing reveals novel gene retrocopies in the human population.
PMID:24615986
Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry.
PMID:24608367
Scanning of transposable elements and analyzing expression of transposase genes of sweet potato [Ipomoea batatas].
PMID:24608103
2013 Curt Stern Award Address.
PMID:24607386
The challenges and importance of structural variation detection in livestock.
PMID:24600474
DNA methylome in spleen of avian pathogenic Escherichia coli-challenged broilers and integration with mRNA expression.
PMID:24599154
Human-specific epigenetic variation in the immunological Leukotriene B4 Receptor (LTB4R/BLT1) implicated in common inflammatory diseases.
PMID:24598577
Human genetics' 50th anniversary issue.
PMID:24595704
Transcriptome sequencing and De Novo analysis of Youngia japonica using the illumina platform.
PMID:24595283
Data simulation in machine olfaction with the R package chemosensors.
PMID:24586410
Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes.
PMID:24581492
Deletion of Gpr128 results in weight loss and increased intestinal contraction frequency.
PMID:24574718
Constraint and opportunity in genome innovation.
PMID:24572460
Global patterns of apparent copy number variation in birds revealed by cross-species comparative genomic hybridization.
PMID:24570127
Morphine induces redox-based changes in global DNA methylation and retrotransposon transcription by inhibition of excitatory amino acid transporter type 3-mediated cysteine uptake.
PMID:24569088
Epigenetics in the pathogenesis of rheumatoid arthritis.
PMID:24568138
Epigenetic modification, dehydration, and molecular crowding effects on the thermodynamics of i-motif structure formation from C-rich DNA.
PMID:24564458
The synthetic biology future.
PMID:24561910
Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer.
PMID:24553397
Variation, evolution, and correlation analysis of C+G content and genome or chromosome size in different kingdoms and phyla.
PMID:24551092
GATA5 CpG island hypermethylation is an independent predictor for poor clinical outcome in renal cell carcinoma.
PMID:24549248
Sequencing, assembling, and correcting draft genomes using recombinant populations.
PMID:24531727
An Introduction to Functional Genomics and Systems Biology.
PMID:24527360
Point-of-care technologies for molecular diagnostics using a drop of blood.
PMID:24525172
Genome-guided transcriptome assembly in the age of next-generation sequencing.
PMID:24524156
Prediction and classification of ncRNAs using structural information.
PMID:24521294
Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene function.
PMID:24516395
Endogenous retroviruses and the development of cancer.
PMID:24511094
Divergent and dynamic activity of endogenous retroviruses in burn patients and their inflammatory potential.
PMID:24509167
Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function.
PMID:24502763
A simple method for gene phasing using mate pair sequencing.
PMID:24502676
Small-molecule probes elucidate global enzyme activity in a proteomic context.
PMID:24499666
A new genome-wide method to track horizontally transferred sequences: application to Drosophila.
PMID:24497602
Twenty-first century science as a relational process: from eureka! to team science and a place for community psychology.
PMID:24496718
An antisense promoter in mouse L1 retrotransposon open reading frame-1 initiates expression of diverse fusion transcripts and limits retrotransposition.
PMID:24493738
Comparing DNA integration site clusters with scan statistics.
PMID:24489369
Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle.
PMID:24487278
Nuclear architecture as an epigenetic regulator of neural development and function.
PMID:24486963
Finding the missing honey bee genes: lessons learned from a genome upgrade.
PMID:24479613
A new biophysical metric for interrogating the information content in human genome sequence variation: Proof of concept.
PMID:24478921
Genome-scale analysis of demographic history and adaptive selection.
PMID:24474201
Trans-activation, post-transcriptional maturation, and induction of antibodies to HERV-K (HML-2) envelope transmembrane protein in HIV-1 infection.
PMID:24472118
Significant overlap between human genome-wide association-study nominated breast cancer risk alleles and rat mammary cancer susceptibility loci.
PMID:24467842
Long non-coding RNA H19 promotes glioma cell invasion by deriving miR-675.
PMID:24466011
Neurofilament Heavy polypeptide CpG island methylation associates with prognosis of renal cell carcinoma and prediction of antivascular endothelial growth factor therapy response.
PMID:24464810
Alu- and 7SL RNA Analogues Suppress MCF-7 Cell Viability through Modulating the Transcription of Endoplasmic Reticulum Stress Response Genes.
PMID:24455187
Diversity of human tRNA genes from the 1000-genomes project.
PMID:24448271
An empirically informed critique of Habermas' argument from human nature.
PMID:24446150
Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals.
PMID:24438357
Effects of short-term exposure to inhalable particulate matter on DNA methylation of tandem repeats.
PMID:24436168
The emerging molecular architecture of schizophrenia, polygenic risk scores and the clinical implications for GxE research.
PMID:24435092
Sequencing depth and coverage: key considerations in genomic analyses.
PMID:24434847
The first draft of the pigeonpea genome sequence.
PMID:24431589
Whole genome sequence of a Turkish individual.
PMID:24416366
Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.
PMID:24410833
Post-genomics nanotechnology is gaining momentum: nanoproteomics and applications in life sciences.
PMID:24410486
Horizontal gene transfer in the acquisition of novel traits by metazoans.
PMID:24403327
A computational framework to infer human disease-associated long noncoding RNAs.
PMID:24392133
An absolute index (Ab-index) to measure a researcher's useful contributions and productivity.
PMID:24391941
Community-Based Participatory Research and Gene-Environment Interaction Methodologies Addressing Environmental Justice among Migrant and Seasonal Farmworker Women and Children in Texas: "From Mother to Child Project".
PMID:24391476
Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum.
PMID:24377353
DIAMUND: direct comparison of genomes to detect mutations.
PMID:24375697
Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin.
PMID:24373511
Mutation discovery for Mendelian traits in non-laboratory animals: a review of achievements up to 2012.
PMID:24372556
RNase L restricts the mobility of engineered retrotransposons in cultured human cells.
PMID:24371271
APOBEC3G oligomerization is associated with the inhibition of both Alu and LINE-1 retrotransposition.
PMID:24367644
(13)C NMR spectroscopy applications to brain energy metabolism.
PMID:24367329
Zinc and the aging brain.
PMID:24366781
Increased seroreactivity to HERV-K10 peptides in patients with HTLV myelopathy.
PMID:24365054
Life cycle of an n-globin pseudogene microsatellite locus.
PMID:24363661
A novel null homozygous mutation confirms CACNA2D2 as a gene mutated in epileptic encephalopathy.
PMID:24358150
Next generation 1536-well oligonucleotide synthesizer with on-the-fly dispense.
PMID:24355807
A novel recombinant retrovirus in the genomes of modern birds combines features of avian and mammalian retroviruses.
PMID:24352464
Identification and biochemical characterization of protein phosphatase 5 from the cantharidin-producing blister beetle, Epicauta chinensis.
PMID:24351830
CrossMap: a versatile tool for coordinate conversion between genome assemblies.
PMID:24351709
A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes.
PMID:24347612
A tumor-promoting mechanism mediated by retrotransposon-encoded reverse transcriptase is active in human transformed cell lines.
PMID:24345856
Differential inhibition of LINE1 and LINE2 retrotransposition by vertebrate AID/APOBEC proteins.
PMID:24344916
De novo assembly of a field isolate genome reveals novel Plasmodium vivax erythrocyte invasion genes.
PMID:24340114
Comparative genomic analysis of eutherian ribonuclease A genes.
PMID:24337645
The population history of endogenous retroviruses in mule deer (Odocoileus hemionus).
PMID:24336966
An age-of-allele test of neutrality for transposable element insertions.
PMID:24336751
Concepts of tissue injury and cell death in inflammation: a historical perspective.
PMID:24336099
Genome sequencing: a systematic review of health economic evidence.
PMID:24330507
Characterization of L1 ORF1p self-interaction and cellular localization using a mammalian two-hybrid system.
PMID:24324740
Students' perspective on genomics: from sample to sequence using the case study of blueberry.
PMID:24324481
DNA transposon-based gene vehicles - scenes from an evolutionary drive.
PMID:24320156
The roles of genetic polymorphisms and human immunodeficiency virus infection in lipid metabolism.
PMID:24319689
Structural features and mechanism of translocation of non-LTR retrotransposons in Candida albicans.
PMID:24317340
The Vertebrate Genome Annotation browser 10 years on.
PMID:24316575
Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment.
PMID:24314227
Enhancing systems medicine beyond genotype data by dynamic patient signatures: having information and using it too.
PMID:24312119
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.
PMID:24306534
Genetic and epigenetic determinants mediate proneness of oncogene breakpoint sites for involvement in TCR translocations.
PMID:24304972
Detection limit of intragenic deletions with targeted array comparative genomic hybridization.
PMID:24304607
Influence of age, sex and genetic factors on the human brain.
PMID:24297733
Comparative genomics of oral isolates of Streptococcus mutans by in silico genome subtraction does not reveal accessory DNA associated with severe early childhood caries.
PMID:24291226
Rapid and inexpensive screening of genomic copy number variations using a novel quantitative fluorescent PCR method.
PMID:24288428
L1 retrotransposons, cancer stem cells and oncogenesis.
PMID:24286172
Molecular versatility: the many faces and functions of noncoding RNA.
PMID:24281974
Not so pseudo anymore: pseudogenes as therapeutic targets.
PMID:24279857
Alu mobile elements: from junk DNA to genomic gems.
PMID:24278713
Genome-scale technology driven advances to research into normal and malignant haematopoiesis.
PMID:24278696
Whole genome sequencing of field isolates reveals a common duplication of the Duffy binding protein gene in Malagasy Plasmodium vivax strains.
PMID:24278487
DNA sequences at a glance.
PMID:24278218
DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis.
PMID:24278031
Stable RNA nanoparticles as potential new generation drugs for cancer therapy.
PMID:24270010
Systematic classification of non-coding RNAs by epigenomic similarity.
PMID:24267974
Role of pathogens in multiple sclerosis.
PMID:24266364
Associations between serum perfluoroalkyl acids and LINE-1 DNA methylation.
PMID:24263140
Microbial diversity in the era of omic technologies.
PMID:24260747
Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response.
PMID:24254230
InvFEST, a database integrating information of polymorphic inversions in the human genome.
PMID:24253300
LINE-1 activation and epigenetic silencing of suppressor genes in cancer: Causally related events?
PMID:24251074
Domesticated transposable element gene products in human cancer.
PMID:24251072
Association and differentiation of MHC class I and II polymorphic Alu insertions and HLA-A, -B, -C and -DRB1 alleles in the Chinese Han population.
PMID:24248811
Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden Markov model sequence profiles.
PMID:24246499
Identification of significant features in DNA microarray data.
PMID:24244802
Linear decay of retrotransposon antisense bias across genes is contingent upon tissue specificity.
PMID:24244495
Retrotransposon silencing during embryogenesis: dicer cuts in LINE.
PMID:24244199
A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.
PMID:24243933
Deorphanizing the human transmembrane genome: A landscape of uncharacterized membrane proteins.
PMID:24241348
Human heart failure: is cell therapy a valid option?
PMID:24239645
Functional microRNAs and target sites are created by lineage-specific transposition.
PMID:24234653
Epigenetic regulation by long noncoding RNAs in plants.
PMID:24233054
Increased expression and copy number amplification of LINE-1 and SINE B1 retrotransposable elements in murine mammary carcinoma progression.
PMID:24231191
STaRRRT: a table of short tandem repeats in regulatory regions of the human genome.
PMID:24228761
Metabolic mechanisms of epigenetic regulation.
PMID:24228614
Epigenetic status of LINE-1 predicts clinical outcome in early-stage rectal cancer.
PMID:24220694
Identification of three new Alu Yb subfamilies by source tracking of recently integrated Alu Yb elements.
PMID:24216009
Discovery of recurrent structural variants in nasopharyngeal carcinoma.
PMID:24214394
Epigenomic elements enriched in the promoters of autoimmunity susceptibility genes.
PMID:24213554
The nature of nurture: refining the definition of the exposome.
PMID:24213143
Cancer genome sequencing and its implications for personalized cancer vaccines.
PMID:24213133
Retrotransposon-encoded reverse transcriptase in the genesis, progression and cellular plasticity of human cancer.
PMID:24212657
Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.
PMID:24211518
Classification of α-helical membrane proteins using predicted helix architectures.
PMID:24204844
Condensin II subunit dCAP-D3 restricts retrotransposon mobilization in Drosophila somatic cells.
PMID:24204294
The role of transposable elements in health and diseases of the central nervous system.
PMID:24198348
Exome sequencing: one small step for malignant hyperthermia, one giant step for our specialty--why exome sequencing matters to all of us, not just the experts.
PMID:24195944
Non-LTR retrotransposons and microsatellites: Partners in genomic variation.
PMID:24195012
A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion.
PMID:24190946
Perspective: a systems approach to diabetes research.
PMID:24187547
DNA methylation profiling in X;autosome translocations supports a role for L1 repeats in the spread of X chromosome inactivation.
PMID:24186870
Review: Alternative Splicing (AS) of Genes As An Approach for Generating Protein Complexity.
PMID:24179441
Complexity of the alternative splicing landscape in plants.
PMID:24179125
A 129-kb deletion on chromosome 12 confers substantial protection against rheumatoid arthritis, implicating the gene SLC2A3.
PMID:24178905
The genomics of schizophrenia: update and implications.
PMID:24177465
Intronic deletions in the SLC34A3 gene: a cautionary tale for mutation analysis of hereditary hypophosphatemic rickets with hypercalciuria.
PMID:24176905
Old world monkeys and new age science: the evolution of nonhuman primate systems virology.
PMID:24174440
Improving genome assemblies and annotations for nonhuman primates.
PMID:24174438
Genetic and molecular alterations in pancreatic cancer: implications for personalized medicine.
PMID:24172537
Functional transcriptomics in the post-ENCODE era.
PMID:24172201
Gene regulation by non-coding RNAs.
PMID:24164576
An emerging place for lung cancer genomics in 2013.
PMID:24163742
Mutagenesis and phenotyping resources in zebrafish for studying development and human disease.
PMID:24162064
Intron retention in the alternatively spliced region of RON results from weak 3' splice site recognition.
PMID:24155930
Differential L1 regulation in pluripotent stem cells of humans and apes.
PMID:24153179
Potential Antibacterial Targets in Bacterial Central Metabolism.
PMID:24151543
Clinical implications of the LINE-1 methylation levels in patients with gastrointestinal cancer.
PMID:24150097
The challenges, advantages and future of phenome-wide association studies.
PMID:24147732
A review of bacteria-animal lateral gene transfer may inform our understanding of diseases like cancer.
PMID:24146634
Next-generation sequencing for mitochondrial disorders.
PMID:24138576
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
PMID:24136355
Human genome replication proceeds through four chromatin states.
PMID:24130466
Lessons from postgenome-wide association studies: functional analysis of cancer predisposition loci.
PMID:24127939
Structure and Expression Analyses of SVA Elements in Relation to Functional Genes.
PMID:24124410
Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients.
PMID:24114970
Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome.
PMID:24113537
De novo identification of VRC01 class HIV-1-neutralizing antibodies by next-generation sequencing of B-cell transcripts.
PMID:24106303
Cancer genomics identifies disrupted epigenetic genes.
PMID:24104525
"Conferring authorship": biobank stakeholders' experiences with publication credit in collaborative research.
PMID:24098803
A novel actin mRNA splice variant regulates ACTG1 expression.
PMID:24098136
Exploring mechanisms of human disease through structurally resolved protein interactome networks.
PMID:24096645
Transposable elements and their potential role in complex lung disorder.
PMID:24093510
BLUEPRINT: mapping human blood cell epigenomes.
PMID:24091925
LINE-1 retrotransposable element DNA accumulates in HIV-1-infected cells.
PMID:24089548
Guanine holes are prominent targets for mutation in cancer and inherited disease.
PMID:24086153
Alu elements: an intrinsic source of human genome instability.
PMID:24080407
Utilization of transposable element mPing as a novel genetic tool for modification of the stress response in rice.
PMID:24078785
Mapping human epigenomes.
PMID:24074860
Mass fingerprinting of complex mixtures: protein inference from high-resolution peptide masses and predicted retention times.
PMID:24074221
Transcriptome profile of the green odorous frog (Odorrana margaretae).
PMID:24073255
Lineage-specific duplications of Muroidea Faim and Spag6 genes and atypical accelerated evolution of the parental Spag6 gene.
PMID:24071998
Contamination of live attenuated vaccines with an infectious feline endogenous retrovirus (RD-114 virus).
PMID:24068581
Punctuated emergences of genetic and phenotypic innovations in eumetazoan, bilaterian, euteleostome, and hominidae ancestors.
PMID:24065732
Splicing and alternative splicing in rice and humans.
PMID:24064058
Association of endogenous retroviruses and long terminal repeats with human disorders.
PMID:24062987
The genetics of NAFLD.
PMID:24061205
Information measure for long-range correlated sequences: the case of the 24 human chromosomes.
PMID:24056670
DNA sequencing methods in human genetics and disease research.
PMID:24049638
Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline.
PMID:24045705
The Human Genome Project: big science transforms biology and medicine.
PMID:24040834
In vitro screening for compounds that enhance human L1 mobilization.
PMID:24040300
Proteasome inhibitors block DNA repair and radiosensitize non-small cell lung cancer.
PMID:24040035
Long non-coding RNAs and complex human diseases.
PMID:24036441
Modulation of LINE-1 and Alu/SVA retrotransposition by Aicardi-Goutières syndrome-related SAMHD1.
PMID:24035396
LINEs of evidence: noncanonical DNA replication as an epigenetic determinant.
PMID:24034780
Genotyping of human neutrophil antigens (HNA) from whole genome sequencing data.
PMID:24028078
CFTR activity and mitochondrial function.
PMID:24024153
Insights into the loblolly pine genome: characterization of BAC and fosmid sequences.
PMID:24023741
The relationship between gene isoform multiplicity, number of exons and protein divergence.
PMID:24023641
Massively parallel sequencing: the new frontier of hematologic genomics.
PMID:24021669
From helix to hematology: introduction to a collection of reviews on the emerging role of next-generation sequencing in hematology.
PMID:24016460
Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS.
PMID:24015873
Lizards and LINEs: selection and demography affect the fate of L1 retrotransposons in the genome of the green anole (Anolis carolinensis).
PMID:24013105
Splice variants of zinc finger protein 695 mRNA associated to ovarian cancer.
PMID:24007497
Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era.
PMID:24007365
Population genetics and molecular evolution of DNA sequences in transposable elements. I. A simulation framework.
PMID:24002643
Effect of heavy metals on silencing of engineered long interspersed element-1 retrotransposon in nondividing neuroblastoma cell line.
PMID:23999712
The MaSuRCA genome assembler.
PMID:23990416
Population genomics of cardiometabolic traits: design of the University College London-London School of Hygiene and Tropical Medicine-Edinburgh-Bristol (UCLEB) Consortium.
PMID:23977022
Refrex-1, a soluble restriction factor against feline endogenous and exogenous retroviruses.
PMID:23966402
Towards precision medicine: advances in computational approaches for the analysis of human variants.
PMID:23962656
Segmenting the human genome based on states of neutral genetic divergence.
PMID:23959903
Plasma S-adenosylmethionine, DNMT polymorphisms, and peripheral blood LINE-1 methylation among healthy Chinese adults in Singapore.
PMID:23957506
Use of single nucleotide polymorphism array technology to improve the identification of chromosomal lesions in leukemia.
PMID:23941516
Prolonged treatment with DNMT inhibitors induces distinct effects in promoters and gene-bodies.
PMID:23940695
Hydroquinone increases 5-hydroxymethylcytosine formation through ten eleven translocation 1 (TET1) 5-methylcytosine dioxygenase.
PMID:23940045
Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation.
PMID:23938756
Exploring the effects of immunity and life history on the dynamics of an endogenous retrovirus.
PMID:23938754
'There and back again': revisiting the pathophysiological roles of human endogenous retroviruses in the post-genomic era.
PMID:23938753
Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes.
PMID:23938751
Visualized computational predictions of transcriptional effects by intronic endogenous retroviruses.
PMID:23936536
Genistein inhibits prostate cancer cell growth by targeting miR-34a and oncogenic HOTAIR.
PMID:23936419
Mitogenomes from two uncommon haplogroups mark late glacial/postglacial expansions from the near east and neolithic dispersals within Europe.
PMID:23936216
The Profile of Human Sperm Proteome; A Mini-review.
PMID:23926502
The nuage mediates retrotransposon silencing in mouse primordial ovarian follicles.
PMID:23924633
Evaluation of genome sequencing quality in selected plant species using expressed sequence tags.
PMID:23922843
Detecting Alu insertions from high-throughput sequencing data.
PMID:23921633
Progress toward personalized medicine for glaucoma.
PMID:23914252
Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factors.
PMID:23913413
The Future of Children's Health in the Genomic Era.
PMID:23908811
The application of next-generation sequencing in the autozygosity mapping of human recessive diseases.
PMID:23907654
Locating Pb2+ and Zn2+ in zinc finger-like peptides using mass spectrometry.
PMID:23907592
Profiling the immune stromal interface in breast cancer and its potential for clinical impact.
PMID:23904829
Organelle targeting: third level of drug targeting.
PMID:23898223
Single-cell sequencing-based technologies will revolutionize whole-organism science.
PMID:23897237
Epigenetic signature and enhancer activity of the human APOE gene.
PMID:23892237
REViewer: a tool for linear visualization of repetitive elements within a sequence query.
PMID:23891933
Detecting and comparing non-coding RNAs in the high-throughput era.
PMID:23887659
Unraveling genomic variation from next generation sequencing data.
PMID:23885890
Rates and patterns of great ape retrotransposition.
PMID:23884656
Cigarette smoking and DNA methylation.
PMID:23882278
Genomics of lymphoid malignancies reveal major activation pathways in lymphocytes.
PMID:23880067
Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.
PMID:23878096
Hypomethylation of long interspersed nuclear element-1 promoter is associated with poor outcomes for curative resected hepatocellular carcinoma.
PMID:23875825
Translational genetics for diagnosis of human disorders of sex development.
PMID:23875799
A superfamily of DNA transposons targeting multicopy small RNA genes.
PMID:23874566
Lessons from next-generation sequencing analysis in hematological malignancies.
PMID:23872706
Evolution: life has evolved to evolve: comment on "How life changes itself: the Read-Write (RW) genome" by James Shapiro.
PMID:23871431
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.
PMID:23870653
Spatial localization of genes determined by intranuclear DNA fragmentation with the fusion proteins lamin KRED and histone KRED und visible light.
PMID:23869190
Generation of transgenic mice with megabase-sized human yeast artificial chromosomes by yeast spheroplast-embryonic stem cell fusion.
PMID:23868074
Global DNA methylation in a population with aflatoxin B1 exposure.
PMID:23867725
Down's syndrome, neuroinflammation, and Alzheimer neuropathogenesis.
PMID:23866266
Are human endogenous retroviruses pathogenic? An approach to testing the hypothesis.
PMID:23864388
A versatile microsatellite instability reporter system in human cells.
PMID:23861444
Dominant form of congenital hyperinsulinism maps to HK1 region on 10q.
PMID:23859901
Evolutionary age of repetitive element subfamilies and sensitivity of DNA methylation to airborne pollutants.
PMID:23855992
The sequence signature of an Ig-fold.
PMID:23842991
Periodic distribution of a putative nucleosome positioning motif in human, nonhuman primates, and archaea: mutual information analysis.
PMID:23841049
Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples.
PMID:23840181
The Mighty Mouse: the impact of rodents on advances in biomedical research.
PMID:23829104
STAU1 binding 3' UTR IRAlus complements nuclear retention to protect cells from PKR-mediated translational shutdown.
PMID:23824540
CluGene: A Bioinformatics Framework for the Identification of Co-Localized, Co-Expressed and Co-Regulated Genes Aimed at the Investigation of Transcriptional Regulatory Networks from High-Throughput Expression Data.
PMID:23823315
Homoeologous chromosomes of Xenopus laevis are highly conserved after whole-genome duplication.
PMID:23820579
Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model.
PMID:23818630
Understanding the regulatory and transcriptional complexity of the genome through structure.
PMID:23817049
Comparative genomics as a tool to understand evolution and disease.
PMID:23817047
Jenner-predict server: prediction of protein vaccine candidates (PVCs) in bacteria based on host-pathogen interactions.
PMID:23815072
Copy number variation of transposable elements in Triticum-Aegilops genus suggests evolutionary and revolutionary dynamics following allopolyploidization.
PMID:23807536
Genomic analysis of ERVWE2 locus in patients with multiple sclerosis: absence of genetic association but potential role of human endogenous retrovirus type W elements in molecular mimicry with myelin antigen.
PMID:23805135
The intertwining of transposable elements and non-coding RNAs.
PMID:23803660
Enhancers.
PMID:23801531
RNA-seq in the tetraploid Xenopus laevis enables genome-wide insight in a classic developmental biology model organism.
PMID:23792920
The impact of natural selection on health and disease: uses of the population genetics approach in humans.
PMID:23789027
Epigenetic mechanisms in fetal origins of health and disease.
PMID:23787712
Crystal structures and RNA-binding properties of the RNA recognition motifs of heterogeneous nuclear ribonucleoprotein L: insights into its roles in alternative splicing regulation.
PMID:23782695
GAT: a simulation framework for testing the association of genomic intervals.
PMID:23782611
Evolution of the correlation between expression divergence and protein divergence in mammals.
PMID:23781097
Special considerations in prognostic research in cancer involving genetic polymorphisms.
PMID:23773794
Analysis of 8 X-chromosomal markers in the population of central Croatia.
PMID:23771754
On guard: coronin proteins in innate and adaptive immunity.
PMID:23765056
QualComp: a new lossy compressor for quality scores based on rate distortion theory.
PMID:23758828
Passive and active DNA methylation and the interplay with genetic variation in gene regulation.
PMID:23755361
A comparison of 100 human genes using an alu element-based instability model.
PMID:23755193
Storage conditions and stability of global DNA methylation in placental tissue.
PMID:23750648
The role of recombination in the origin and evolution of Alu subfamilies.
PMID:23750218
Statistical analysis of pentose phosphate pathway genes from eubacteria and eukarya reveals translational selection as a major force in shaping codon usage pattern.
PMID:23750079
Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition.
PMID:23749060
Cancer epigenetics: a brief review.
PMID:23744972
Overview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseases.
PMID:23743227
Integrated platform for genome-wide screening and construction of high-density genetic interaction maps in mammalian cells.
PMID:23739767
Next-generation sequencing in genetic hearing loss.
PMID:23738631
Transposable element invasions.
PMID:23734297
Studying recombination with high-throughput sequencing: an educational primer for use with "fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome".
PMID:23733850
Expansion of the pseudo-autosomal region and ongoing recombination suppression in the Silene latifolia sex chromosomes.
PMID:23733786
Genomics and genetics in the biology of adaptation to exercise.
PMID:23733655
LINE-1 and Alu retrotransposition exhibit clonal variation.
PMID:23732044
Improved coverage and accuracy with strand-conserving sequence enrichment.
PMID:23731654
Machine learning and genome annotation: a match meant to be?
PMID:23731483
Enzymatic production of 'monoclonal stoichiometric' single-stranded DNA oligonucleotides.
PMID:23727986
The epigenetic regulator PLZF represses L1 retrotransposition in germ and progenitor cells.
PMID:23727884
Survival analysis with incomplete genetic data.
PMID:23722305
High-throughput sequencing reveals principles of adeno-associated virus serotype 2 integration.
PMID:23720718
Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections.
PMID:23720713
The role of retrotransposons in gene family expansions: insights from the mouse Abp gene family.
PMID:23718880
Expression of a LINE-1 endonuclease variant in gastric cancer: its association with clinicopathological parameters.
PMID:23718141
Alu elements in primates are preferentially lost from areas of high GC content.
PMID:23717800
ZNF408 is mutated in familial exudative vitreoretinopathy and is crucial for the development of zebrafish retinal vasculature.
PMID:23716654
Posttranscriptional regulation by RNA-binding proteins during epithelial-to-mesenchymal transition.
PMID:23715860
REAPR: a universal tool for genome assembly evaluation.
PMID:23710727
Emerging tools for synthetic genome design.
PMID:23708771
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.
PMID:23708189
Retroviruses and amyotrophic lateral sclerosis.
PMID:23707220
HPV 5 and 8 E6 expression reduces ATM protein levels and attenuates LINE-1 retrotransposition.
PMID:23706308
PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data.
PMID:23704902
Identification of a novel PNMA-MS1 gene in marsupials suggests the LTR retrotransposon-derived PNMA genes evolved differently in marsupials and eutherians.
PMID:23704700
Expression of a large LINE-1-driven antisense RNA is linked to epigenetic silencing of the metastasis suppressor gene TFPI-2 in cancer.
PMID:23703216
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.
PMID:23698863
Footprint of APOBEC3 on the genome of human retroelements.
PMID:23698293
Comparative genomic and transcriptomic analysis of tandemly and segmentally duplicated genes in rice.
PMID:23696832
Human monogenic disease genes have frequently functionally redundant paralogs.
PMID:23696728
Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles.
PMID:23696454
Rapid multiplexed genotyping of simple tandem repeats using capture and high-throughput sequencing.
PMID:23696428
On the classification of long non-coding RNAs.
PMID:23696037
ABC transporters in multidrug resistance and pharmacokinetics, and strategies for drug development.
PMID:23688078
Structural and functional annotation of the porcine immunome.
PMID:23676093
A human anti-c-Met Fab fragment conjugated with doxorubicin as targeted chemotherapy for hepatocellular carcinoma.
PMID:23675455
The specificity and flexibility of l1 reverse transcription priming at imperfect T-tracts.
PMID:23675310
Genetic variation and its role in malignancy.
PMID:23675233
Overlapping of genes in the human genome.
PMID:23675016
Information theory, gene expression, and combinatorial regulation: a quantitative analysis.
PMID:23674094
GATA simple sequence repeats function as enhancer blocker boundaries.
PMID:23673629
Molecular evolution of peptidergic signaling systems in bilaterians.
PMID:23671109
eQTL Mapping Using RNA-seq Data.
PMID:23667399
Retrotransposons: a new and credible source of inherited and somatically acquired hepatocellular carcinoma mutations.
PMID:23665280
A gene expression restriction network mediated by sense and antisense Alu sequences located on protein-coding messenger RNAs.
PMID:23663499
Multiple suboptimal solutions for prediction rules in gene expression data.
PMID:23662163
Detection of serum Alu element hypomethylation for the diagnosis and prognosis of glioma.
PMID:23657981
Multiple sclerosis: autoimmunity and viruses.
PMID:23656710
Digital quantitation of potential therapeutic target RNAs.
PMID:23656494
Sixty years of genome biology.
PMID:23651518
DNA methylation: the future of crime scene investigation?
PMID:23649761
Identification of multiple binding sites for the THAP domain of the Galileo transposase in the long terminal inverted-repeats.
PMID:23648487
Reprogramming of the HepG2 genome by long interspersed nuclear element-1.
PMID:23648019
Long noncoding RNAs in biology and hematopoiesis.
PMID:23645840
Genomic dynamics of transposable elements in the western clawed frog (Silurana tropicalis).
PMID:23645600
Genomic resources for multiple species in the Drosophila ananassae species group.
PMID:23639891
Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: environmental factors.
PMID:23638344
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs.
PMID:23637635
Role of the human endogenous retrovirus HERV-K18 in autoimmune disease susceptibility: study in the Spanish population and meta-analysis.
PMID:23634223
Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.
PMID:23629695
Systematic biases in DNA copy number originate from isolation procedures.
PMID:23618369
Genetics of coronary artery disease and myocardial infarction--2013.
PMID:23616109
Genome-wide analysis of alternative splicing during dendritic cell response to a bacterial challenge.
PMID:23613991
Sequence and structure-specific elements of HERG mRNA determine channel synthesis and trafficking efficiency.
PMID:23608144
The challenge of increasing Pfam coverage of the human proteome.
PMID:23603847
Innovations in proteomic profiling of cancers: alternative splice variants as a new class of cancer biomarker candidates and bridging of proteomics with structural biology.
PMID:23603631
The human qualities needed to complete the global eradication of polio.
PMID:23599552
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations.
PMID:23599355
Are results of targeted gene sequencing ready to be used for clinical decision making for patients with acute myelogenous leukemia?
PMID:23595294
Computational solutions for omics data.
PMID:23594911
Cancer genome-sequencing study design.
PMID:23594910
Human-specific HERV-K insertion causes genomic variations in the human genome.
PMID:23593260
Revising a personal genome by comparing and combining data from two different sequencing platforms.
PMID:23593254
Identification of optimum sequencing depth especially for de novo genome assembly of small genomes using next generation sequencing data.
PMID:23593174
Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.
PMID:23590730
Existing and emerging technologies for tumor genomic profiling.
PMID:23589546
Mathematical modeling of complex biological systems: from parts lists to understanding systems behavior.
PMID:23584751
IMACULAT - an open access package for the quantitative analysis of chromosome localization in the nucleus.
PMID:23577217
The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice.
PMID:23576519
Searching microsatellites in DNA sequences: approaches used and tools developed.